macs →
2.1.0.20151222-1 →
armhf → 2016-02-10 00:22:04
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on testwandboard
+==============================================================================+
| macs 2.1.0.20151222-1 (armhf) 09 Feb 2016 23:50 |
+==============================================================================+
Package: macs
Version: 2.1.0.20151222-1
Source Version: 2.1.0.20151222-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/macs-s_a5RE/macs-2.1.0.20151222' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macs-s_a5RE' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-5101584d-54ce-4868-9556-73da387f6314' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8676 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.7 MB]
Fetched 19.4 MB in 1min 15s (258 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
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Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'macs' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/macs.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/macs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1636 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main macs 2.1.0.20151222-1 (dsc) [2111 B]
Get:2 http://172.17.0.1/private stretch-staging/main macs 2.1.0.20151222-1 (tar) [1625 kB]
Get:3 http://172.17.0.1/private stretch-staging/main macs 2.1.0.20151222-1 (diff) [8980 B]
Fetched 1636 kB in 5s (300 kB/s)
Download complete and in download only mode
Check architectures
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Check dependencies
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-0r6034/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-0r6034/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-0r6034/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-0r6034/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-0r6034/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-0r6034/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-0r6034/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-0r6034/apt_archive ./ Sources [194 B]
Get:5 file:/<<BUILDDIR>>/resolver-0r6034/apt_archive ./ Packages [507 B]
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+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
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Get:1 file:/<<BUILDDIR>>/resolver-0r6034/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
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Merged Build-Depends: debhelper (>= 9), dh-python, python-all-dev, python-numpy, python-setuptools, help2man, cython
Filtered Build-Depends: debhelper (>= 9), dh-python, python-all-dev, python-numpy, python-setuptools, help2man, cython
dpkg-deb: building package 'sbuild-build-depends-macs-dummy' in '/<<BUILDDIR>>/resolver-YkKJ7Q/apt_archive/sbuild-build-depends-macs-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-YkKJ7Q/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-YkKJ7Q/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-YkKJ7Q/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-YkKJ7Q/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-YkKJ7Q/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-YkKJ7Q/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-YkKJ7Q/apt_archive ./ Sources [226 B]
Get:5 file:/<<BUILDDIR>>/resolver-YkKJ7Q/apt_archive ./ Packages [542 B]
Reading package lists...
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Reading package lists...
+------------------------------------------------------------------------------+
| Install macs build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autotools-dev bsdmainutils cython debhelper dh-python
dh-strip-nondeterminism file gettext gettext-base groff-base help2man
intltool-debian libarchive-zip-perl libblas-common libblas3 libcroco3
libexpat1 libexpat1-dev libffi6 libfile-stripnondeterminism-perl
libgfortran3 libglib2.0-0 libicu55 liblapack3 liblocale-gettext-perl
libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal
libpython3.5-stdlib libsqlite3-0 libssl1.0.2 libtimedate-perl libunistring0
libxml2 man-db mime-support po-debconf python python-all python-all-dev
python-dev python-minimal python-numpy python-pkg-resources
python-setuptools python2.7 python2.7-dev python2.7-minimal python3
python3-minimal python3.5 python3.5-minimal
Suggested packages:
wamerican | wordlist whois vacation cython-doc dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff less www-browser libmail-box-perl
python-doc python-tk gfortran python-nose python-numpy-dbg python-numpy-doc
python-setuptools-doc python2.7-doc binfmt-support python3-doc python3-tk
python3-venv python3.5-venv python3.5-doc
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autotools-dev bsdmainutils cython debhelper dh-python
dh-strip-nondeterminism file gettext gettext-base groff-base help2man
intltool-debian libarchive-zip-perl libblas-common libblas3 libcroco3
libexpat1 libexpat1-dev libffi6 libfile-stripnondeterminism-perl
libgfortran3 libglib2.0-0 libicu55 liblapack3 liblocale-gettext-perl
libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal
libpython3.5-stdlib libsqlite3-0 libssl1.0.2 libtimedate-perl libunistring0
libxml2 man-db mime-support po-debconf python python-all python-all-dev
python-dev python-minimal python-numpy python-pkg-resources
python-setuptools python2.7 python2.7-dev python2.7-minimal python3
python3-minimal python3.5 python3.5-minimal sbuild-build-depends-macs-dummy
0 upgraded, 62 newly installed, 0 to remove and 1 not upgraded.
Need to get 59.6 MB/59.6 MB of archives.
After this operation, 162 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-YkKJ7Q/apt_archive ./ sbuild-build-depends-macs-dummy 0.invalid.0 [800 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf liblocale-gettext-perl armhf 1.07-1+b1 [18.0 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.11-3 [380 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.11-3 [1093 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-1 [40.0 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.59 [36.4 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.10.2-1 [408 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2f-2 [883 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.11-3 [1836 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.11-3 [266 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-1 [19.5 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-1 [150 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libmpdec2 armhf 2.4.1-1 [65.8 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-minimal armhf 3.5.1-5 [553 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf python3.5-minimal armhf 3.5.1-5 [1333 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf python3-minimal armhf 3.5.1-1 [35.1 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-stdlib armhf 3.5.1-5 [2063 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf python3.5 armhf 3.5.1-5 [194 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libpython3-stdlib armhf 3.5.1-1 [18.5 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf dh-python all 2.20151103 [76.9 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf python3 armhf 3.5.1-1 [21.5 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libpython2.7 armhf 2.7.11-3 [908 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf cython armhf 0.23.2+git16-ga8fbae1-1+rpi1 [1448 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.015-1 [11.0 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.015-1 [6810 B]
Get:46 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160115 [827 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf help2man armhf 1.47.3 [154 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.0-2 [13.5 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 5.3.1-7+rpi1 [154 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.0-2 [110 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.1.0-7 [114 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.0-2 [1382 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-dev armhf 2.7.11-3 [27.1 MB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libpython-dev armhf 2.7.11-1 [19.6 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libpython-all-dev armhf 2.7.11-1 [958 B]
Get:56 http://172.17.0.1/private stretch-staging/main armhf python-all armhf 2.7.11-1 [940 B]
Get:57 http://172.17.0.1/private stretch-staging/main armhf python2.7-dev armhf 2.7.11-3 [279 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf python-dev armhf 2.7.11-1 [1138 B]
Get:59 http://172.17.0.1/private stretch-staging/main armhf python-all-dev armhf 2.7.11-1 [962 B]
Get:60 http://172.17.0.1/private stretch-staging/main armhf python-numpy armhf 1:1.10.4-2 [1551 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 18.8-1 [100 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf python-setuptools all 18.8-1 [202 kB]
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Unpacking sbuild-build-depends-macs-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.21-7) ...
Setting up liblocale-gettext-perl (1.07-1+b1) ...
Setting up groff-base (1.22.3-7) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up mime-support (3.59) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libsqlite3-0:armhf (3.10.2-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.11-3) ...
Setting up python2.7 (2.7.11-3) ...
Setting up libpython-stdlib:armhf (2.7.11-1) ...
Setting up python (2.7.11-1) ...
Setting up libmpdec2:armhf (2.4.1-1) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libpython3.5-stdlib:armhf (3.5.1-5) ...
Setting up python3.5 (3.5.1-5) ...
Setting up libpython3-stdlib:armhf (3.5.1-1) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.7-2) ...
Setting up libpython2.7:armhf (2.7.11-3) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up autotools-dev (20150820.1) ...
Setting up cython (0.23.2+git16-ga8fbae1-1+rpi1) ...
Setting up libglib2.0-0:armhf (2.46.2-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.56-2) ...
Setting up libfile-stripnondeterminism-perl (0.015-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up help2man (1.47.3) ...
Setting up libblas-common (3.6.0-2) ...
Setting up libgfortran3:armhf (5.3.1-7+rpi1) ...
Setting up libblas3 (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libexpat1-dev:armhf (2.1.0-7) ...
Setting up liblapack3 (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libpython2.7-dev:armhf (2.7.11-3) ...
Setting up libpython-dev:armhf (2.7.11-1) ...
Setting up libpython-all-dev:armhf (2.7.11-1) ...
Setting up python-all (2.7.11-1) ...
Setting up python2.7-dev (2.7.11-3) ...
Setting up python-dev (2.7.11-1) ...
Setting up python-all-dev (2.7.11-1) ...
Setting up python-numpy (1:1.10.4-2) ...
Setting up python-pkg-resources (18.8-1) ...
Setting up python-setuptools (18.8-1) ...
Setting up dh-python (2.20151103) ...
Setting up python3 (3.5.1-1) ...
Setting up debhelper (9.20160115) ...
Setting up sbuild-build-depends-macs-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.015-1) ...
Processing triggers for libc-bin (2.21-7) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.3.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-2 dpkg-dev_1.18.4 g++-5_5.3.1-7+rpi1 gcc-5_5.3.1-7+rpi1 libc6-dev_2.21-7 libstdc++-5-dev_5.3.1-7+rpi1 libstdc++6_5.3.1-7+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.2.1 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-2 bsdmainutils_9.0.6 bsdutils_1:2.27.1-3 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.24-1 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-7+rpi1 cython_0.23.2+git16-ga8fbae1-1+rpi1 dash_0.5.8-2.1 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20160115 debianutils_4.7 dh-python_2.20151103 dh-strip-nondeterminism_0.015-1 diffutils_1:3.3-3 dmsetup_2:1.02.115-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-7+rpi1 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-7+rpi1 gcc-5-base_5.3.1-7+rpi1 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 help2man_1.47.3 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5.1 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-7+rpi1 kmod_22-1 libacl1_2.2.52-2 libapparmor1_2.10-3 libapt-pkg5.0_1.2.1 libarchive-zip-perl_1.56-2 libasan2_5.3.1-7+rpi1 libatomic1_5.3.1-7+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblas-common_3.6.0-2 libblas3_3.6.0-2 libblkid1_2.27.1-3 libbz2-1.0_1.0.6-8 libc-bin_2.21-7 libc-dev-bin_2.21-7 libc6_2.21-7 libc6-dev_2.21-7 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-7+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.201 libdevmapper1.02.1_2:1.02.115-1 libdpkg-perl_1.18.4 libdrm2_2.4.66-2 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.015-1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-7+rpi1 libgcc1_1:5.3.1-7+rpi1 libgcrypt20_1.6.4-5 libgdbm3_1.8.3-13.1 libgfortran3_5.3.1-7+rpi1 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.3.1-7+rpi1 libgpg-error0_1.21-1 libicu55_55.1-7 libisl15_0.16.1-1 libklibc_2.0.4-7+rpi1 libkmod2_22-1 liblapack3_3.6.0-2 liblocale-gettext-perl_1.07-1+b1 liblz4-1_0.0~r131-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-3 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-1 libperl5.22_5.22.1-5 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-1 libprocps5_2:3.3.11-3 libpython-all-dev_2.7.11-1 libpython-dev_2.7.11-1 libpython-stdlib_2.7.11-1 libpython2.7_2.7.11-3 libpython2.7-dev_2.7.11-3 libpython2.7-minimal_2.7.11-3 libpython2.7-stdlib_2.7.11-3 libpython3-stdlib_3.5.1-1 libpython3.5-minimal_3.5.1-5 libpython3.5-stdlib_3.5.1-5 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsmartcols1_2.27.1-3 libsqlite3-0_3.10.2-1 libss2_1.42.13-1 libssl1.0.2_1.0.2f-2 libstdc++-5-dev_5.3.1-7+rpi1 libstdc++6_5.3.1-7+rpi1 libsystemd0_228-4+b1 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-7+rpi1 libudev1_228-4+b1 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-3 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 make_4.1-5 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-0.1 mawk_1.3.3-17 mime-support_3.59 mount_2.27.1-3 multiarch-support_2.21-7 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-5 perl-base_5.22.1-5 perl-modules-5.22_5.22.1-5 plymouth_0.9.2-3 po-debconf_1.0.19 procps_2:3.3.11-3 python_2.7.11-1 python-all_2.7.11-1 python-all-dev_2.7.11-1 python-dev_2.7.11-1 python-minimal_2.7.11-1 python-numpy_1:1.10.4-2 python-pkg-resources_18.8-1 python-setuptools_18.8-1 python2.7_2.7.11-3 python2.7-dev_2.7.11-3 python2.7-minimal_2.7.11-3 python3_3.5.1-1 python3-minimal_3.5.1-1 python3.5_3.5.1-5 python3.5-minimal_3.5.1-5 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-macs-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-4+b1 systemd-sysv_228-4+b1 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2016a-1 udev_228-4+b1 util-linux_2.27.1-3 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Feb 3 16:31:41 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./macs_2.1.0.20151222-1.dsc
dpkg-source: info: extracting macs in macs-2.1.0.20151222
dpkg-source: info: unpacking macs_2.1.0.20151222.orig.tar.gz
dpkg-source: info: unpacking macs_2.1.0.20151222-1.debian.tar.xz
dpkg-source: info: applying spelling
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-5101584d-54ce-4868-9556-73da387f6314
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: source package macs
dpkg-buildpackage: source version 2.1.0.20151222-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build macs-2.1.0.20151222
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2 --buildsystem=pybuild
dh_testdir -O--buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:184: python2.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python2 --buildsystem=pybuild
dh_testdir -a -O--buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for pyx in `find MACS2/ -name "*.pyx" | grep -v khash`; do \
rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
cp setup.py setup.py.orig
cp setup_w_cython.py setup.py
dh_auto_build
I: pybuild base:184: /usr/bin/python setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/Constants.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/BinKeeper.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/test_processing.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/test_threading.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data
copying MACS2/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data
copying MACS2/data/g0.01.dat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data
copying MACS2/data/g0.05.dat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data
running build_ext
cythoning MACS2/Prob.pyx to MACS2/Prob.c
building 'MACS2.Prob' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/MACS2
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Prob.c -o build/temp.linux-armv7l-2.7/MACS2/Prob.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Prob.o -lm -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Prob.so
cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c
building 'MACS2.IO.Parser' extension
creating build/temp.linux-armv7l-2.7/MACS2/IO
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/Parser.c -o build/temp.linux-armv7l-2.7/MACS2/IO/Parser.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/Parser.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/Parser.so
cythoning MACS2/Pileup.pyx to MACS2/Pileup.c
building 'MACS2.Pileup' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Pileup.c -o build/temp.linux-armv7l-2.7/MACS2/Pileup.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/cPosValCalculation.c -o build/temp.linux-armv7l-2.7/MACS2/cPosValCalculation.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Pileup.o build/temp.linux-armv7l-2.7/MACS2/cPosValCalculation.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Pileup.so
cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c
building 'MACS2.PeakModel' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/PeakModel.c -o build/temp.linux-armv7l-2.7/MACS2/PeakModel.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/PeakModel.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/PeakModel.so
cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c
building 'MACS2.PeakDetect' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/PeakDetect.c -o build/temp.linux-armv7l-2.7/MACS2/PeakDetect.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/PeakDetect.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/PeakDetect.so
cythoning MACS2/Signal.pyx to MACS2/Signal.c
building 'MACS2.Signal' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Signal.c -o build/temp.linux-armv7l-2.7/MACS2/Signal.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Signal.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Signal.so
cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c
building 'MACS2.IO.PeakIO' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/PeakIO.c -o build/temp.linux-armv7l-2.7/MACS2/IO/PeakIO.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/PeakIO.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PeakIO.so
cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c
building 'MACS2.IO.BedGraphIO' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-armv7l-2.7/MACS2/IO/BedGraphIO.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/BedGraphIO.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraphIO.so
cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c
building 'MACS2.IO.FixWidthTrack' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/FixWidthTrack.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/FixWidthTrack.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/FixWidthTrack.so
cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c
building 'MACS2.IO.PairedEndTrack' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/PairedEndTrack.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/PairedEndTrack.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PairedEndTrack.so
cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c
building 'MACS2.IO.BedGraph' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/BedGraph.c -o build/temp.linux-armv7l-2.7/MACS2/IO/BedGraph.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/BedGraph.o -lm -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraph.so
cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c
building 'MACS2.IO.ScoreTrack' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/ScoreTrack.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/ScoreTrack.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/ScoreTrack.so
cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c
building 'MACS2.IO.CallPeakUnit' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-armv7l-2.7/MACS2/IO/CallPeakUnit.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/CallPeakUnit.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/CallPeakUnit.so
cythoning MACS2/hashtable.pyx to MACS2/hashtable.c
building 'MACS2.hashtable' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/hashtable.c -o build/temp.linux-armv7l-2.7/MACS2/hashtable.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/hashtable.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/hashtable.so
cythoning MACS2/Statistics.pyx to MACS2/Statistics.c
building 'MACS2.Statistics' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Statistics.c -o build/temp.linux-armv7l-2.7/MACS2/Statistics.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/cStatistics.c -o build/temp.linux-armv7l-2.7/MACS2/cStatistics.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Statistics.o build/temp.linux-armv7l-2.7/MACS2/cStatistics.o -lm -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Statistics.so
running build_scripts
creating build/scripts-2.7
copying and adjusting bin/macs2 -> build/scripts-2.7
changing mode of build/scripts-2.7/macs2 from 664 to 775
PYTHONPATH=./.pybuild/pythonX.Y_2.7/build/ help2man \
--no-discard-stderr --no-info \
--name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python bin/macs2" > debian/macs2.1
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \
"[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \
> debian/macs2_${subcommand}-man-include; done
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \
PYTHONPATH=./.pybuild/pythonX.Y_2.7/build/ help2man \
--no-discard-stderr --no-info --version-string="2.1.0.20151222" \
--include debian/macs2_${subcommand}-man-include \
"python bin/macs2 ${subcommand}" > \
debian/macs2_${subcommand}.1; done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:184: cd /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build; python2.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
fakeroot debian/rules binary-arch
dh binary-arch --with python2 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py install --root /<<PKGBUILDDIR>>/debian/macs
running install
running build
running build_py
running build_ext
skipping 'MACS2/Prob.c' Cython extension (up-to-date)
skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date)
skipping 'MACS2/Pileup.c' Cython extension (up-to-date)
skipping 'MACS2/PeakModel.c' Cython extension (up-to-date)
skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date)
skipping 'MACS2/Signal.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date)
skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date)
skipping 'MACS2/hashtable.c' Cython extension (up-to-date)
skipping 'MACS2/Statistics.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/macs/usr
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Constants.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BinKeeper.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_processing.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_threading.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/Parser.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PeakIO.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraphIO.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/FixWidthTrack.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PairedEndTrack.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraph.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/ScoreTrack.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/CallPeakUnit.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/__init__.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_processing.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_threading.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data/g0.01.dat -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data/g0.05.dat -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Prob.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Pileup.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/PeakModel.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/PeakDetect.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Signal.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/hashtable.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Statistics.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/__init__.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Constants.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/OptValidator.py to OptValidator.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py to OutputWriter.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/BinKeeper.py to BinKeeper.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data/__init__.py to __init__.pyc
running install_egg_info
running egg_info
writing requirements to MACS2.egg-info/requires.txt
writing MACS2.egg-info/PKG-INFO
writing top-level names to MACS2.egg-info/top_level.txt
writing dependency_links to MACS2.egg-info/dependency_links.txt
reading manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'MANIFEST'
no previously-included directories found matching 'test'
writing manifest file 'MACS2.egg-info/SOURCES.txt'
Copying MACS2.egg-info to /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2-2.1.0.20151222.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/macs/usr/bin
copying build/scripts-2.7/macs2 -> /<<PKGBUILDDIR>>/debian/macs/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/macs/usr/bin/macs2 to 775
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:328: renaming PeakDetect.so to PeakDetect.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming PeakModel.so to PeakModel.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Pileup.so to Pileup.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Prob.so to Prob.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Signal.so to Signal.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Statistics.so to Statistics.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming hashtable.so to hashtable.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming BedGraph.so to BedGraph.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming BedGraphIO.so to BedGraphIO.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming CallPeakUnit.so to CallPeakUnit.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming FixWidthTrack.so to FixWidthTrack.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming PairedEndTrack.so to PairedEndTrack.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Parser.so to Parser.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming PeakIO.so to PeakIO.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming ScoreTrack.so to ScoreTrack.arm-linux-gnueabihf.so
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package macs: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package macs: unused substitution variable ${python:Versions}
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.1.0.20151222-1_armhf.deb'.
dpkg-deb: building package 'macs' in '../macs_2.1.0.20151222-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../macs_2.1.0.20151222-1_armhf.changes
dpkg-genchanges: warning: package macs-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build macs-2.1.0.20151222
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160210-0021
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
macs_2.1.0.20151222-1_armhf.changes:
------------------------------------
Format: 1.8
Date: Mon, 01 Feb 2016 09:49:01 -0800
Source: macs
Binary: macs
Architecture: armhf
Version: 2.1.0.20151222-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <crusoe@ucdavis.edu>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (2.1.0.20151222-1) unstable; urgency=medium
.
* New upstream release
* A couple more spelling fixes & updated VCS URLs.
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Checksums-Sha256:
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Files:
2ef8c6891b203cb37b959f688bb17481 3057678 debug extra macs-dbgsym_2.1.0.20151222-1_armhf.deb
102363057661a4e09e5423c833666cd9 923160 science optional macs_2.1.0.20151222-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
macs-dbgsym_2.1.0.20151222-1_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 3057678 bytes: control archive=1253 bytes.
989 bytes, 13 lines control
1590 bytes, 15 lines md5sums
Package: macs-dbgsym
Source: macs
Version: 2.1.0.20151222-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3357
Depends: macs (= 2.1.0.20151222-1)
Section: debug
Priority: extra
Homepage: http://github.com/taoliu/MACS/
Description: Debug symbols for macs
Auto-Built-Package: debug-symbols
Build-Ids: 0e09dab0110da38f11b21485405d06e7e23b2ac3 11c71866be6e86f0c2574ed34d09a427854179d5 17bc997bc88d6b5c05c33b9387b3fa78b77820e9 439b852581e1368b71c0a74538282f5a137cd13c 4f165788b6def28c5711c6c92eed8b54fe7e9d10 5082f913b9a427a1056b06bc467bde3e63bf1f1b 5fce6d5afc1c37508b3b118bb989253b336b11a6 75ad4b2c9d07a83283c2deeabcab80d5cac8e699 8094f4874196409676eef220b4e5079baafda069 8daffc35fe8388365b88418c427d6324781d0cca b1fc8109d2707062e5db2a2da9c08c6398e3c3c6 d51baebb7e2e922716f0a480f5c5fa2db23f59f8 e9ce0cfd5c0d9f0d547dd5c023a9ee14addb228a ed01e0a52a951ec6bbf6c74f54547fc35cd04955 eef57ccfa383441487324f827678bbe667c8f291
drwxr-xr-x root/root 0 2016-02-10 00:21 ./
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drwxr-xr-x root/root 0 2016-02-10 00:21 ./usr/lib/debug/
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-rw-r--r-- root/root 102840 2016-02-10 00:21 ./usr/lib/debug/.build-id/0e/09dab0110da38f11b21485405d06e7e23b2ac3.debug
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-rw-r--r-- root/root 200580 2016-02-10 00:21 ./usr/lib/debug/.build-id/17/bc997bc88d6b5c05c33b9387b3fa78b77820e9.debug
drwxr-xr-x root/root 0 2016-02-10 00:21 ./usr/lib/debug/.build-id/43/
-rw-r--r-- root/root 104848 2016-02-10 00:21 ./usr/lib/debug/.build-id/43/9b852581e1368b71c0a74538282f5a137cd13c.debug
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-rw-r--r-- root/root 328656 2016-02-10 00:21 ./usr/lib/debug/.build-id/4f/165788b6def28c5711c6c92eed8b54fe7e9d10.debug
drwxr-xr-x root/root 0 2016-02-10 00:21 ./usr/lib/debug/.build-id/50/
-rw-r--r-- root/root 341384 2016-02-10 00:21 ./usr/lib/debug/.build-id/50/82f913b9a427a1056b06bc467bde3e63bf1f1b.debug
drwxr-xr-x root/root 0 2016-02-10 00:21 ./usr/lib/debug/.build-id/5f/
-rw-r--r-- root/root 109036 2016-02-10 00:21 ./usr/lib/debug/.build-id/5f/ce6d5afc1c37508b3b118bb989253b336b11a6.debug
drwxr-xr-x root/root 0 2016-02-10 00:21 ./usr/lib/debug/.build-id/75/
-rw-r--r-- root/root 70332 2016-02-10 00:21 ./usr/lib/debug/.build-id/75/ad4b2c9d07a83283c2deeabcab80d5cac8e699.debug
drwxr-xr-x root/root 0 2016-02-10 00:21 ./usr/lib/debug/.build-id/80/
-rw-r--r-- root/root 200916 2016-02-10 00:21 ./usr/lib/debug/.build-id/80/94f4874196409676eef220b4e5079baafda069.debug
drwxr-xr-x root/root 0 2016-02-10 00:21 ./usr/lib/debug/.build-id/8d/
-rw-r--r-- root/root 143536 2016-02-10 00:21 ./usr/lib/debug/.build-id/8d/affc35fe8388365b88418c427d6324781d0cca.debug
drwxr-xr-x root/root 0 2016-02-10 00:21 ./usr/lib/debug/.build-id/b1/
-rw-r--r-- root/root 401228 2016-02-10 00:21 ./usr/lib/debug/.build-id/b1/fc8109d2707062e5db2a2da9c08c6398e3c3c6.debug
drwxr-xr-x root/root 0 2016-02-10 00:21 ./usr/lib/debug/.build-id/d5/
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macs_2.1.0.20151222-1_armhf.deb
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new debian package, version 2.0.
size 923160 bytes: control archive=2931 bytes.
979 bytes, 18 lines control
5484 bytes, 62 lines md5sums
152 bytes, 9 lines * postinst #!/bin/sh
243 bytes, 14 lines * prerm #!/bin/sh
Package: macs
Version: 2.1.0.20151222-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3488
Depends: cython, python (<< 2.8), python (>= 2.7~), python-numpy, python:any (>= 2.7.5-5~), libc6 (>= 2.15)
Section: science
Priority: optional
Homepage: http://github.com/taoliu/MACS/
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
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-rw-r--r-- root/root 901 2015-12-22 21:21 ./usr/lib/python2.7/dist-packages/MACS2/Constants.py
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-rw-r--r-- root/root 26830 2015-05-19 17:42 ./usr/lib/python2.7/dist-packages/MACS2/OptValidator.py
-rw-r--r-- root/root 10994 2013-12-16 21:59 ./usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py
-rw-r--r-- root/root 99276 2016-02-10 00:21 ./usr/lib/python2.7/dist-packages/MACS2/PeakDetect.arm-linux-gnueabihf.so
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-rw-r--r-- root/root 131412 2016-02-10 00:21 ./usr/lib/python2.7/dist-packages/MACS2/Signal.arm-linux-gnueabihf.so
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-rw-r--r-- root/root 24 2013-12-16 21:59 ./usr/lib/python2.7/dist-packages/MACS2/__init__.py
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-rw-r--r-- root/root 3364 2016-02-03 16:29 ./usr/share/doc/macs/copyright
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| Summary |
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Build Architecture: armhf
Build-Space: 55860
Build-Time: 1250
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 555
Job: macs_2.1.0.20151222-1
Machine Architecture: armhf
Package: macs
Package-Time: 1906
Source-Version: 2.1.0.20151222-1
Space: 55860
Status: successful
Version: 2.1.0.20151222-1
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Finished at 20160210-0021
Build needed 00:31:46, 55860k disc space