macs →
2.1.0.20150731-1 →
armhf → 2015-10-15 05:34:09
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-02
╔══════════════════════════════════════════════════════════════════════════════╗
║ macs 2.1.0.20150731-1 (armhf) 15 Oct 2015 05:03 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: macs
Version: 2.1.0.20150731-1
Source Version: 2.1.0.20150731-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/macs-kYBjwW/macs-2.1.0.20150731' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/macs-kYBjwW' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-2f07105c-7775-4abb-b08e-cbc1024919d7' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8358 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.2 MB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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Checking available source versions...
Download source files with APT
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Building dependency tree...
Reading state information...
NOTICE: 'macs' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/macs.git
Need to get 1636 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main macs 2.1.0.20150731-1 (dsc) [2104 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main macs 2.1.0.20150731-1 (tar) [1626 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main macs 2.1.0.20150731-1 (diff) [7908 B]
Fetched 1636 kB in 0s (4276 kB/s)
Download complete and in download only mode
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-VgEf4F/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
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Ign file: ./ Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
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Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, python-all-dev, python-numpy, python-setuptools, help2man, cython
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, python-all-dev, python-numpy, python-setuptools, help2man, cython
dpkg-deb: building package 'sbuild-build-depends-macs-dummy' in '/«BUILDDIR»/resolver-95r8Dz/apt_archive/sbuild-build-depends-macs-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install macs build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cython debhelper dh-python dh-strip-nondeterminism file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libblas-common libblas3 libcroco3 libexpat1 libexpat1-dev libffi6
libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libicu55
liblapack3 libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.4-minimal
libpython3.4-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
mime-support po-debconf python python-all python-all-dev python-dev
python-minimal python-numpy python-pkg-resources python-setuptools python2.7
python2.7-dev python2.7-minimal python3 python3-minimal python3.4
python3.4-minimal
Suggested packages:
wamerican wordlist whois vacation cython-doc dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff less www-browser libmail-box-perl
python-doc python-tk gfortran python-nose python-numpy-dbg python-numpy-doc
python-setuptools-doc python2.7-doc binfmt-support python3-doc python3-tk
python3-venv python3.4-venv python3.4-doc
Recommended packages:
curl wget lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils cython debhelper dh-python dh-strip-nondeterminism file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libblas-common libblas3 libcroco3 libexpat1 libexpat1-dev libffi6
libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libicu55
liblapack3 libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.4-minimal
libpython3.4-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
mime-support po-debconf python python-all python-all-dev python-dev
python-minimal python-numpy python-pkg-resources python-setuptools python2.7
python2.7-dev python2.7-minimal python3 python3-minimal python3.4
python3.4-minimal sbuild-build-depends-macs-dummy
0 upgraded, 59 newly installed, 0 to remove and 0 not upgraded.
Need to get 59.0 MB/59.0 MB of archives.
After this operation, 160 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.4-1 [974 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libpython2.7-minimal armhf 2.7.10-4 [379 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main python2.7-minimal armhf 2.7.10-4 [1092 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main python-minimal armhf 2.7.9-1 [40.1 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main mime-support all 3.59 [36.4 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.2.1-3 [18.5 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libsqlite3-0 armhf 3.8.11.1-1 [391 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2d-1 [882 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libpython2.7-stdlib armhf 2.7.10-4 [1736 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main python2.7 armhf 2.7.10-4 [258 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libpython-stdlib armhf 2.7.9-1 [19.6 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main python armhf 2.7.9-1 [151 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.46.0-2 [2376 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main libicu55 armhf 55.1-5 [7378 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.2+zdfsg1-4 [797 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libmpdec2 armhf 2.4.1-1 [65.8 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libpython3.4-minimal armhf 3.4.3-9 [491 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main python3.4-minimal armhf 3.4.3-9 [1264 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main python3-minimal armhf 3.4.3-6 [34.8 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libpython3.4-stdlib armhf 3.4.3-9 [2052 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main python3.4 armhf 3.4.3-9 [223 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libpython3-stdlib armhf 3.4.3-6 [18.3 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main dh-python all 2.20150826 [71.5 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main python3 armhf 3.4.3-6 [21.3 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.25-2 [250 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.25-2 [61.2 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.6-1 [119 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libpython2.7 armhf 2.7.10-4 [907 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main cython armhf 0.23.2+git16-ga8fbae1-1 [1444 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.6-1 [1393 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main libarchive-zip-perl all 1.53-1 [97.3 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main libfile-stripnondeterminism-perl all 0.012-1 [10.6 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main dh-strip-nondeterminism all 0.012-1 [7282 B]
Get:42 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20151005 [817 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main help2man armhf 1.47.2 [154 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
Get:45 http://172.17.0.1/private/ stretch-staging/main libgfortran3 armhf 5.2.1-21+rpi1 [154 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main libblas3 armhf 1.2.20110419-10 [120 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libexpat1-dev armhf 2.1.0-7 [114 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main libpython2.7-dev armhf 2.7.10-4 [27.2 MB]
Get:50 http://172.17.0.1/private/ stretch-staging/main libpython-dev armhf 2.7.9-1 [19.6 kB]
Get:51 http://172.17.0.1/private/ stretch-staging/main libpython-all-dev armhf 2.7.9-1 [1012 B]
Get:52 http://172.17.0.1/private/ stretch-staging/main python-all armhf 2.7.9-1 [994 B]
Get:53 http://172.17.0.1/private/ stretch-staging/main python2.7-dev armhf 2.7.10-4 [279 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main python-dev armhf 2.7.9-1 [1188 B]
Get:55 http://172.17.0.1/private/ stretch-staging/main python-all-dev armhf 2.7.9-1 [1024 B]
Get:56 http://172.17.0.1/private/ stretch-staging/main python-numpy armhf 1:1.9.2-5 [1511 kB]
Get:57 http://172.17.0.1/private/ stretch-staging/main python-pkg-resources all 18.3.1-2 [99.4 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main python-setuptools all 18.3.1-2 [201 kB]
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Processing triggers for libc-bin (2.19-22) ...
Setting up groff-base (1.22.3-1) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-1) ...
Setting up man-db (2.7.4-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up mime-support (3.59) ...
Setting up libffi6:armhf (3.2.1-3) ...
Setting up libsqlite3-0:armhf (3.8.11.1-1) ...
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Setting up python2.7 (2.7.10-4) ...
Setting up libpython-stdlib:armhf (2.7.9-1) ...
Setting up python (2.7.9-1) ...
Setting up libglib2.0-0:armhf (2.46.0-2) ...
No schema files found: doing nothing.
Setting up libicu55:armhf (55.1-5) ...
Setting up libxml2:armhf (2.9.2+zdfsg1-4) ...
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libmpdec2:armhf (2.4.1-1) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libpython3.4-stdlib:armhf (3.4.3-9) ...
Setting up python3.4 (3.4.3-9) ...
Setting up libpython3-stdlib:armhf (3.4.3-6) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.6-1) ...
Setting up libpython2.7:armhf (2.7.10-4) ...
Setting up cython (0.23.2+git16-ga8fbae1-1) ...
Setting up gettext (0.19.6-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.18) ...
Setting up libarchive-zip-perl (1.53-1) ...
Setting up libfile-stripnondeterminism-perl (0.012-1) ...
Setting up help2man (1.47.2) ...
Setting up libblas-common (1.2.20110419-10) ...
Setting up libgfortran3:armhf (5.2.1-21+rpi1) ...
Setting up libblas3 (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libexpat1-dev:armhf (2.1.0-7) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libpython2.7-dev:armhf (2.7.10-4) ...
Setting up libpython-dev:armhf (2.7.9-1) ...
Setting up libpython-all-dev:armhf (2.7.9-1) ...
Setting up python-all (2.7.9-1) ...
Setting up python2.7-dev (2.7.10-4) ...
Setting up python-dev (2.7.9-1) ...
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Setting up python-numpy (1:1.9.2-5) ...
Setting up python-pkg-resources (18.3.1-2) ...
Setting up python-setuptools (18.3.1-2) ...
Setting up dh-python (2.20150826) ...
Setting up python3 (3.4.3-6) ...
Setting up debhelper (9.20151005) ...
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Setting up dh-strip-nondeterminism (0.012-1) ...
Processing triggers for libc-bin (2.19-22) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-3 dpkg-dev_1.18.3 g++-4.9_4.9.3-4 g++-5_5.2.1-21+rpi1 gcc-4.9_4.9.3-4 gcc-5_5.2.1-21+rpi1 libc6-dev_2.19-22 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-21+rpi1 libstdc++6_5.2.1-21+rpi1 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.10.2 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.1-3 bsdmainutils_9.0.6 bsdutils_1:2.27-3 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi2 cpp-4.9_4.9.3-4 cpp-5_5.2.1-21+rpi1 cython_0.23.2+git16-ga8fbae1-1 dash_0.5.7-4 debconf_1.5.57 debfoster_2.7-2 debhelper_9.20151005 debianutils_4.5.1 dh-python_2.20150826 dh-strip-nondeterminism_0.012-1 diffutils_1:3.3-2 dmsetup_2:1.02.104-1 dpkg_1.18.3 dpkg-dev_1.18.3 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-9 g++_4:5.2.1-4+rpi2 g++-4.9_4.9.3-4 g++-5_5.2.1-21+rpi1 gcc_4:5.2.1-4+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-1 gcc-4.9_4.9.3-4 gcc-4.9-base_4.9.3-4 gcc-5_5.2.1-21+rpi1 gcc-5-base_5.2.1-21+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gnupg_1.4.19-5 gpgv_1.4.19-5 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4 help2man_1.47.2 hostname_3.16 init_1.23 init-system-helpers_1.23 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.10-2 libapt-pkg4.12_1.0.9.10 libapt-pkg4.16_1.0.10.2 libarchive-zip-perl_1.53-1 libasan1_4.9.3-4 libasan2_5.2.1-21+rpi1 libatomic1_5.2.1-21+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4 libaudit1_1:2.4.4-4 libblas-common_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.27-3 libbz2-1.0_1.0.6-8 libc-bin_2.19-22 libc-dev-bin_2.19-22 libc6_2.19-22 libc6-dev_2.19-22 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.2.1-21+rpi1 libcloog-isl4_0.18.3-1 libcomerr2_1.42.13-1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-11 libdbus-1-3_1.10.0-3 libdebconfclient0_0.195 libdevmapper1.02.1_2:1.02.104-1 libdpkg-perl_1.18.3 libdrm2_2.4.64-1 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27-3 libffi6_3.2.1-3 libfile-stripnondeterminism-perl_0.012-1 libgc1c2_1:7.4.2-7 libgcc-4.9-dev_4.9.3-4 libgcc-5-dev_5.2.1-21+rpi1 libgcc1_1:5.2.1-21+rpi1 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgfortran3_5.2.1-21+rpi1 libglib2.0-0_2.46.0-2 libgmp10_2:6.0.0+dfsg-7+rpi1 libgomp1_5.2.1-21+rpi1 libgpg-error0_1.20-1 libicu55_55.1-5 libisl13_0.14-2 libklibc_2.0.4-2+rpi1 libkmod2_21-1 liblapack3_3.5.0-4 liblocale-gettext-perl_1.07-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27-3 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-1 libncurses5_6.0+20150810-1 libncursesw5_6.0+20150810-1 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-7.2 libpipeline1_1.4.1-1 libpng12-0_1.2.50-2+b2 libprocps3_2:3.3.9-9 libprocps4_2:3.3.10-2 libpython-all-dev_2.7.9-1 libpython-dev_2.7.9-1 libpython-stdlib_2.7.9-1 libpython2.7_2.7.10-4 libpython2.7-dev_2.7.10-4 libpython2.7-minimal_2.7.10-4 libpython2.7-stdlib_2.7.10-4 libpython3-stdlib_3.4.3-6 libpython3.4-minimal_3.4.3-9 libpython3.4-stdlib_3.4.3-9 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2+b1 libsmartcols1_2.27-3 libsqlite3-0_3.8.11.1-1 libss2_1.42.13-1 libssl1.0.0_1.0.2d-1 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-21+rpi1 libstdc++6_5.2.1-21+rpi1 libsystemd0_226-4 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20150810-1 libubsan0_5.2.1-21+rpi1 libudev1_226-4 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27-3 libxml2_2.9.2+zdfsg1-4 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.4-1 mawk_1.3.3-17 mime-support_3.59 mount_2.27-3 multiarch-support_2.19-22 nano_2.4.2-1 ncurses-base_6.0+20150810-1 ncurses-bin_6.0+20150810-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 po-debconf_1.0.18 procps_2:3.3.10-2 python_2.7.9-1 python-all_2.7.9-1 python-all-dev_2.7.9-1 python-dev_2.7.9-1 python-minimal_2.7.9-1 python-numpy_1:1.9.2-5 python-pkg-resources_18.3.1-2 python-setuptools_18.3.1-2 python2.7_2.7.10-4 python2.7-dev_2.7.10-4 python2.7-minimal_2.7.10-4 python3_3.4.3-6 python3-minimal_3.4.3-6 python3.4_3.4.3-9 python3.4-minimal_3.4.3-9 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-macs-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_226-4 systemd-sysv_226-4 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-1 tzdata_2015g-1 udev_226-4 util-linux_2.27-3 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon Oct 5 06:22:04 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./macs_2.1.0.20150731-1.dsc
dpkg-source: info: extracting macs in macs-2.1.0.20150731
dpkg-source: info: unpacking macs_2.1.0.20150731.orig.tar.gz
dpkg-source: info: unpacking macs_2.1.0.20150731-1.debian.tar.xz
dpkg-source: info: applying spelling
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-2f07105c-7775-4abb-b08e-cbc1024919d7
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package macs
dpkg-buildpackage: source version 2.1.0.20150731-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build macs-2.1.0.20150731
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2 --buildsystem=pybuild
dh_testdir -O--buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_auto_clean
I: pybuild base:170: python2.7 setup.py clean
running clean
removing '/«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python2 --buildsystem=pybuild
dh_testdir -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:170: python2.7 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/«PKGBUILDDIR»'
for pyx in `find MACS2/ -name "*.pyx" | grep -v khash`; do \
rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
cp setup.py setup.py.orig
cp setup_w_cython.py setup.py
dh_auto_build
I: pybuild base:170: /usr/bin/python setup.py build
running build
running build_py
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/Constants.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/OptValidator.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/OutputWriter.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgbroadcall_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgcmp_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgdiff_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgopt_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgpeakcall_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/callpeak_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/cmbreps_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/diffpeak_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/filterdup_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/pileup_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/predictd_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/randsample_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/refinepeak_cmd.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/BinKeeper.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/test_processing.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/test_threading.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/data
copying MACS2/data/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/data
copying MACS2/data/g0.01.dat -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/data
copying MACS2/data/g0.05.dat -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/data
running build_ext
cythoning MACS2/Prob.pyx to MACS2/Prob.c
building 'MACS2.Prob' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/MACS2
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Prob.c -o build/temp.linux-armv7l-2.7/MACS2/Prob.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Prob.o -lm -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/Prob.so
cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c
building 'MACS2.IO.Parser' extension
creating build/temp.linux-armv7l-2.7/MACS2/IO
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/Parser.c -o build/temp.linux-armv7l-2.7/MACS2/IO/Parser.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/Parser.o -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/Parser.so
cythoning MACS2/Pileup.pyx to MACS2/Pileup.c
building 'MACS2.Pileup' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Pileup.c -o build/temp.linux-armv7l-2.7/MACS2/Pileup.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/cPosValCalculation.c -o build/temp.linux-armv7l-2.7/MACS2/cPosValCalculation.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Pileup.o build/temp.linux-armv7l-2.7/MACS2/cPosValCalculation.o -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/Pileup.so
cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c
building 'MACS2.PeakModel' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/PeakModel.c -o build/temp.linux-armv7l-2.7/MACS2/PeakModel.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/PeakModel.o -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/PeakModel.so
cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c
building 'MACS2.PeakDetect' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/PeakDetect.c -o build/temp.linux-armv7l-2.7/MACS2/PeakDetect.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/PeakDetect.o -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/PeakDetect.so
cythoning MACS2/Signal.pyx to MACS2/Signal.c
building 'MACS2.Signal' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Signal.c -o build/temp.linux-armv7l-2.7/MACS2/Signal.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Signal.o -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/Signal.so
cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c
building 'MACS2.IO.PeakIO' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/PeakIO.c -o build/temp.linux-armv7l-2.7/MACS2/IO/PeakIO.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/PeakIO.o -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PeakIO.so
cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c
building 'MACS2.IO.BedGraphIO' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-armv7l-2.7/MACS2/IO/BedGraphIO.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/BedGraphIO.o -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraphIO.so
cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c
building 'MACS2.IO.FixWidthTrack' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/FixWidthTrack.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/FixWidthTrack.o -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/FixWidthTrack.so
cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c
building 'MACS2.IO.PairedEndTrack' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/PairedEndTrack.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/PairedEndTrack.o -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PairedEndTrack.so
cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c
building 'MACS2.IO.BedGraph' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/BedGraph.c -o build/temp.linux-armv7l-2.7/MACS2/IO/BedGraph.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/BedGraph.o -lm -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraph.so
cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c
building 'MACS2.IO.ScoreTrack' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/ScoreTrack.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/ScoreTrack.o -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/ScoreTrack.so
cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c
building 'MACS2.IO.CallPeakUnit' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-armv7l-2.7/MACS2/IO/CallPeakUnit.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/CallPeakUnit.o -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/CallPeakUnit.so
cythoning MACS2/hashtable.pyx to MACS2/hashtable.c
building 'MACS2.hashtable' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/hashtable.c -o build/temp.linux-armv7l-2.7/MACS2/hashtable.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/hashtable.o -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/hashtable.so
cythoning MACS2/Statistics.pyx to MACS2/Statistics.c
building 'MACS2.Statistics' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Statistics.c -o build/temp.linux-armv7l-2.7/MACS2/Statistics.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/cStatistics.c -o build/temp.linux-armv7l-2.7/MACS2/cStatistics.o -w -Ofast
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Statistics.o build/temp.linux-armv7l-2.7/MACS2/cStatistics.o -lm -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/Statistics.so
running build_scripts
creating build/scripts-2.7
copying and adjusting bin/macs2 -> build/scripts-2.7
changing mode of build/scripts-2.7/macs2 from 664 to 775
PYTHONPATH=./.pybuild/pythonX.Y_2.7/build/ help2man \
--no-discard-stderr --no-info \
--name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python bin/macs2" > debian/macs2.1
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \
"[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \
> debian/macs2_${subcommand}-man-include; done
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \
PYTHONPATH=./.pybuild/pythonX.Y_2.7/build/ help2man \
--no-discard-stderr --no-info --version-string="2.1.0.20150731" \
--include debian/macs2_${subcommand}-man-include \
"python bin/macs2 ${subcommand}" > \
debian/macs2_${subcommand}.1; done
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:170: cd /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build; python2.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
fakeroot debian/rules binary-arch
dh binary-arch --with python2 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:170: /usr/bin/python setup.py install --root /«PKGBUILDDIR»/debian/macs
running install
running build
running build_py
running build_ext
skipping 'MACS2/Prob.c' Cython extension (up-to-date)
skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date)
skipping 'MACS2/Pileup.c' Cython extension (up-to-date)
skipping 'MACS2/PeakModel.c' Cython extension (up-to-date)
skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date)
skipping 'MACS2/Signal.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date)
skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date)
skipping 'MACS2/hashtable.c' Cython extension (up-to-date)
skipping 'MACS2/Statistics.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /«PKGBUILDDIR»/debian/macs/usr
creating /«PKGBUILDDIR»/debian/macs/usr/lib
creating /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7
creating /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages
creating /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/Constants.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/OptValidator.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/OutputWriter.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/__init__.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/bdgbroadcall_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/bdgcmp_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/bdgdiff_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/bdgopt_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/bdgpeakcall_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/callpeak_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/cmbreps_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/diffpeak_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/filterdup_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/pileup_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/predictd_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/randsample_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/refinepeak_cmd.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
creating /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BinKeeper.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/__init__.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_processing.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_threading.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/Parser.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PeakIO.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraphIO.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/FixWidthTrack.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PairedEndTrack.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraph.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/ScoreTrack.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/CallPeakUnit.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/__init__.pyc -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_processing.pyc -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_threading.pyc -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
creating /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/data/__init__.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/data/g0.01.dat -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/data/g0.05.dat -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/Prob.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/Pileup.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/PeakModel.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/PeakDetect.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/Signal.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/hashtable.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/Statistics.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/__init__.pyc -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/MACS2/Constants.pyc -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/OptValidator.py to OptValidator.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py to OutputWriter.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/BinKeeper.py to BinKeeper.pyc
byte-compiling /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data/__init__.py to __init__.pyc
running install_egg_info
running egg_info
creating MACS2.egg-info
writing requirements to MACS2.egg-info/requires.txt
writing MACS2.egg-info/PKG-INFO
writing top-level names to MACS2.egg-info/top_level.txt
writing dependency_links to MACS2.egg-info/dependency_links.txt
writing manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'MANIFEST'
no previously-included directories found matching 'test'
writing manifest file 'MACS2.egg-info/SOURCES.txt'
Copying MACS2.egg-info to /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2-2.1.0.20150731.egg-info
running install_scripts
creating /«PKGBUILDDIR»/debian/macs/usr/bin
copying build/scripts-2.7/macs2 -> /«PKGBUILDDIR»/debian/macs/usr/bin
changing mode of /«PKGBUILDDIR»/debian/macs/usr/bin/macs2 to 775
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:316: renaming PeakDetect.so to PeakDetect.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming PeakModel.so to PeakModel.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming Pileup.so to Pileup.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming Prob.so to Prob.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming Signal.so to Signal.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming Statistics.so to Statistics.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming hashtable.so to hashtable.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming BedGraph.so to BedGraph.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming BedGraphIO.so to BedGraphIO.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming CallPeakUnit.so to CallPeakUnit.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming FixWidthTrack.so to FixWidthTrack.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming PairedEndTrack.so to PairedEndTrack.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming Parser.so to Parser.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming PeakIO.so to PeakIO.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming ScoreTrack.so to ScoreTrack.arm-linux-gnueabihf.so
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package macs: unused substitution variable ${python:Versions}
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'macs' in '../macs_2.1.0.20150731-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../macs_2.1.0.20150731-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build macs-2.1.0.20150731
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20151015-0532
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
macs_2.1.0.20150731-1_armhf.changes:
────────────────────────────────────
Format: 1.8
Date: Sat, 03 Oct 2015 10:37:31 -0700
Source: macs
Binary: macs
Architecture: armhf
Version: 2.1.0.20150731-1
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <crusoe@ucdavis.edu>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (2.1.0.20150731-1) unstable; urgency=low
.
* debian/watch: now released via PyPI.
* debian/rules:
- 2.1.0 uses a single binary with subcommands, manpages have been updated
- use pybuild
* debian/control:
- `cme fix dpkg-control` reformating
- added myself to uploaders
- upgrades to standards-version 3.9.6,dropped deprecated DM-Upload-Allowed
- now managed via git; VCS URLs updated
* debian/upstream/metadata: added paper
* debian/upstream/signing-key.asc: upstream now signs their releases
* debian/copyright:
- upstream is now BSD-3-clause
- MACS2/khash.h is Expat licensed
* debian/lintian-overrides: silence warning about line breaks
* debian/manpages: install manual pages using dh_installman
* debian/patches/{series,spelling}: fix two spelling errors from upstream
* debian/docs: README is now README.rst
Checksums-Sha1:
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Checksums-Sha256:
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Files:
f381d585d3da9862c9022787930065b8 921446 science optional macs_2.1.0.20150731-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
macs_2.1.0.20150731-1_armhf.deb
───────────────────────────────
new debian package, version 2.0.
size 921446 bytes: control archive=2974 bytes.
979 bytes, 18 lines control
5484 bytes, 62 lines md5sums
152 bytes, 9 lines * postinst #!/bin/sh
243 bytes, 14 lines * prerm #!/bin/sh
Package: macs
Version: 2.1.0.20150731-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3488
Depends: cython, python (<< 2.8), python (>= 2.7~), python-numpy, python:any (>= 2.7.5-5~), libc6 (>= 2.15)
Section: science
Priority: optional
Homepage: http://github.com/taoliu/MACS/
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
drwxr-xr-x root/root 0 2015-10-15 05:32 ./
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/bin/
-rwxr-xr-x root/root 58712 2015-10-15 05:31 ./usr/bin/macs2
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/lib/
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/lib/python2.7/
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2-2.1.0.20150731.egg-info/
-rw-r--r-- root/root 673 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2-2.1.0.20150731.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2-2.1.0.20150731.egg-info/dependency_links.txt
-rw-r--r-- root/root 24 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2-2.1.0.20150731.egg-info/requires.txt
-rw-r--r-- root/root 6 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2-2.1.0.20150731.egg-info/top_level.txt
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/
-rw-r--r-- root/root 901 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/Constants.py
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/IO/
-rw-r--r-- root/root 322912 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/IO/BedGraph.arm-linux-gnueabihf.so
-rw-r--r-- root/root 49624 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/IO/BedGraphIO.arm-linux-gnueabihf.so
-rw-r--r-- root/root 11086 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/IO/BinKeeper.py
-rw-r--r-- root/root 395328 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/IO/CallPeakUnit.arm-linux-gnueabihf.so
-rw-r--r-- root/root 306828 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/IO/FixWidthTrack.arm-linux-gnueabihf.so
-rw-r--r-- root/root 172932 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/IO/PairedEndTrack.arm-linux-gnueabihf.so
-rw-r--r-- root/root 291884 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/IO/Parser.arm-linux-gnueabihf.so
-rw-r--r-- root/root 359916 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/IO/PeakIO.arm-linux-gnueabihf.so
-rw-r--r-- root/root 495192 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/IO/ScoreTrack.arm-linux-gnueabihf.so
-rw-r--r-- root/root 0 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/IO/__init__.py
-rw-r--r-- root/root 1017 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/IO/test_processing.py
-rw-r--r-- root/root 944 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/IO/test_threading.py
-rw-r--r-- root/root 26830 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/OptValidator.py
-rw-r--r-- root/root 10994 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py
-rw-r--r-- root/root 99172 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/PeakDetect.arm-linux-gnueabihf.so
-rw-r--r-- root/root 173504 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/PeakModel.arm-linux-gnueabihf.so
-rw-r--r-- root/root 178900 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/Pileup.arm-linux-gnueabihf.so
-rw-r--r-- root/root 87612 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/Prob.arm-linux-gnueabihf.so
-rw-r--r-- root/root 131308 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/Signal.arm-linux-gnueabihf.so
-rw-r--r-- root/root 61276 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/Statistics.arm-linux-gnueabihf.so
-rw-r--r-- root/root 24 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/__init__.py
-rw-r--r-- root/root 2566 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/bdgbroadcall_cmd.py
-rw-r--r-- root/root 3408 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/bdgcmp_cmd.py
-rw-r--r-- root/root 4496 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/bdgdiff_cmd.py
-rw-r--r-- root/root 2291 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/bdgopt_cmd.py
-rw-r--r-- root/root 2830 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/bdgpeakcall_cmd.py
-rw-r--r-- root/root 19532 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/callpeak_cmd.py
-rw-r--r-- root/root 1708 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/cmbreps_cmd.py
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/data/
-rw-r--r-- root/root 1026 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/data/__init__.py
-rw-r--r-- root/root 40804 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/data/g0.01.dat
-rw-r--r-- root/root 40804 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/data/g0.05.dat
-rw-r--r-- root/root 9993 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/diffpeak_cmd.py
-rw-r--r-- root/root 3880 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/filterdup_cmd.py
-rw-r--r-- root/root 86904 2015-10-15 05:32 ./usr/lib/python2.7/dist-packages/MACS2/hashtable.arm-linux-gnueabihf.so
-rw-r--r-- root/root 3012 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/pileup_cmd.py
-rw-r--r-- root/root 3295 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/predictd_cmd.py
-rw-r--r-- root/root 3035 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/randsample_cmd.py
-rw-r--r-- root/root 6920 2015-10-03 17:35 ./usr/lib/python2.7/dist-packages/MACS2/refinepeak_cmd.py
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/share/
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/share/doc/macs/
-rw-r--r-- root/root 8585 2015-10-03 17:35 ./usr/share/doc/macs/README.rst.gz
-rw-r--r-- root/root 1051 2015-10-05 06:19 ./usr/share/doc/macs/changelog.Debian.gz
-rw-r--r-- root/root 14286 2015-10-03 17:35 ./usr/share/doc/macs/changelog.gz
-rw-r--r-- root/root 3364 2015-10-05 06:19 ./usr/share/doc/macs/copyright
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/share/lintian/
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 107 2015-10-05 06:19 ./usr/share/lintian/overrides/macs
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/share/man/
drwxr-xr-x root/root 0 2015-10-15 05:32 ./usr/share/man/man1/
-rw-r--r-- root/root 1058 2015-10-15 05:32 ./usr/share/man/man1/macs2.1.gz
-rw-r--r-- root/root 878 2015-10-15 05:32 ./usr/share/man/man1/macs2_bdgbroadcall.1.gz
-rw-r--r-- root/root 1386 2015-10-15 05:32 ./usr/share/man/man1/macs2_bdgcmp.1.gz
-rw-r--r-- root/root 1203 2015-10-15 05:32 ./usr/share/man/man1/macs2_bdgdiff.1.gz
-rw-r--r-- root/root 860 2015-10-15 05:32 ./usr/share/man/man1/macs2_bdgopt.1.gz
-rw-r--r-- root/root 928 2015-10-15 05:32 ./usr/share/man/man1/macs2_bdgpeakcall.1.gz
-rw-r--r-- root/root 4350 2015-10-15 05:32 ./usr/share/man/man1/macs2_callpeak.1.gz
-rw-r--r-- root/root 784 2015-10-15 05:32 ./usr/share/man/man1/macs2_cmbreps.1.gz
-rw-r--r-- root/root 1616 2015-10-15 05:32 ./usr/share/man/man1/macs2_filterdup.1.gz
-rw-r--r-- root/root 1396 2015-10-15 05:32 ./usr/share/man/man1/macs2_pileup.1.gz
-rw-r--r-- root/root 1320 2015-10-15 05:32 ./usr/share/man/man1/macs2_predictd.1.gz
-rw-r--r-- root/root 1232 2015-10-15 05:32 ./usr/share/man/man1/macs2_randsample.1.gz
-rw-r--r-- root/root 1063 2015-10-15 05:32 ./usr/share/man/man1/macs2_refinepeak.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 51168
Build-Time: 1252
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 426
Job: macs_2.1.0.20150731-1
Machine Architecture: armhf
Package: macs
Package-Time: 1736
Source-Version: 2.1.0.20150731-1
Space: 51168
Status: successful
Version: 2.1.0.20150731-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20151015-0532
Build needed 00:28:56, 51168k disc space