macs →
2.0.9.1-1 →
armhf → 2013-06-27 00:01:33
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testbuildd.raspbian.org
╔══════════════════════════════════════════════════════════════════════════════╗
║ macs 2.0.9.1-1 (armhf) 26 Jun 2013 23:48 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: macs
Version: 2.0.9.1-1
Source Version: 2.0.9.1-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/macs-KzrE6e/macs-2.0.9.1' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/macs-KzrE6e' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-27065a74-1306-433b-b95f-787b514ce83a' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging Release.gpg [490 B]
Get:2 http://172.17.0.1 jessie-staging Release [10.8 kB]
Get:3 http://172.17.0.1 jessie-staging/main Sources [6652 kB]
Get:4 http://172.17.0.1 jessie-staging/main armhf Packages [7717 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 14.4 MB in 43s (334 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'macs' packaging is maintained in the 'Svn' version control system at:
svn://svn.debian.org/debian-med/trunk/packages/macs/trunk/
Need to get 82.7 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main macs 2.0.9.1-1 (dsc) [1418 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main macs 2.0.9.1-1 (tar) [78.5 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main macs 2.0.9.1-1 (diff) [2692 B]
Fetched 82.7 kB in 0s (127 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-FywVop/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 9 not upgraded.
Need to get 0 B/704 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11338 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cython (>= 0.15), python-dev (>= 2.7), help2man, python-numpy
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cython (>= 0.15), python-dev (>= 2.7), help2man, python-numpy
dpkg-deb: building package `sbuild-build-depends-macs-dummy' in `/«BUILDDIR»/resolver-VbsgBY/apt_archive/sbuild-build-depends-macs-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install macs build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cython debhelper file gettext gettext-base groff-base help2man
intltool-debian libasprintf0c2 libblas3 libcroco3 libexpat1 libexpat1-dev
libffi6 libgfortran3 libglib2.0-0 liblapack3 libmagic1 libpipeline1
libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib
libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
po-debconf python python-dev python-minimal python-numpy python-support
python2.7 python2.7-dev python2.7-minimal
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
libmail-box-perl python-doc python-tk python-numpy-doc python-numpy-dbg
python-nose gfortran python2.7-doc binfmt-support
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils cython debhelper file gettext gettext-base groff-base help2man
intltool-debian libasprintf0c2 libblas3 libcroco3 libexpat1 libexpat1-dev
libffi6 libgfortran3 libglib2.0-0 liblapack3 libmagic1 libpipeline1
libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib
libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
po-debconf python python-dev python-minimal python-numpy python-support
python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-macs-dummy
0 upgraded, 40 newly installed, 0 to remove and 9 not upgraded.
Need to get 54.4 MB/54.4 MB of archives.
After this operation, 103 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.4-1 [36.9 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main libssl1.0.0 armhf 1.0.1e-2+rpi1 [1049 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-3 [666 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.3-7 [867 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.2.1-1 [28.4 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libpython2.7-minimal armhf 2.7.5-5 [520 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main mime-support all 3.54 [36.4 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-3 [117 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libsqlite3-0 armhf 3.7.17-1 [436 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libpython2.7-stdlib armhf 2.7.5-5 [2413 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main libpython2.7 armhf 2.7.5-5 [1159 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.8.0+dfsg1-7+nmu1 [822 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main python2.7-minimal armhf 2.7.5-5 [1196 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.1-2build1 [1895 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libgfortran3 armhf 4.8.0-7+rpi1 [229 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libexpat1-dev armhf 2.1.0-3 [210 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libpython2.7-dev armhf 2.7.5-5 [30.6 MB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.2.1-1 [131 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main python2.7 armhf 2.7.5-5 [229 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main python-minimal all 2.7.3-5 [41.8 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main python all 2.7.3-5 [184 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main python-support all 1.0.15 [33.6 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main cython armhf 0.19+git51-g3078752-1 [1522 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.2.1-1 [1932 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20130605 [709 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main help2man armhf 1.43.2 [100 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libblas3 armhf 1.2.20110419-5 [201 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main liblapack3 armhf 3.4.2+dfsg-1 [3584 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main python2.7-dev armhf 2.7.5-5 [277 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main python-dev all 2.7.3-5 [908 B]
Get:39 http://172.17.0.1/private/ jessie-staging/main python-numpy armhf 1:1.7.1-2 [1926 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 54.4 MB in 34s (1564 kB/s)
Selecting previously unselected package libpipeline1:armhf.
(Reading database ... 11338 files and directories currently installed.)
Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.4-1_armhf.deb) ...
Selecting previously unselected package libssl1.0.0:armhf.
Unpacking libssl1.0.0:armhf (from .../libssl1.0.0_1.0.1e-2+rpi1_armhf.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.22.2-3_armhf.deb) ...
Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_armhf.deb) ...
Selecting previously unselected package man-db.
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Selecting previously unselected package libasprintf0c2:armhf.
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Selecting previously unselected package libmagic1:armhf.
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Selecting previously unselected package libpython2.7-minimal.
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Selecting previously unselected package mime-support.
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Selecting previously unselected package libexpat1:armhf.
Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-3_armhf.deb) ...
Selecting previously unselected package libffi6:armhf.
Unpacking libffi6:armhf (from .../libffi6_3.0.13-4_armhf.deb) ...
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Unpacking libsqlite3-0:armhf (from .../libsqlite3-0_3.7.17-1_armhf.deb) ...
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Unpacking libpython2.7-stdlib (from .../libpython2.7-stdlib_2.7.5-5_armhf.deb) ...
Selecting previously unselected package libpython2.7.
Unpacking libpython2.7 (from .../libpython2.7_2.7.5-5_armhf.deb) ...
Selecting previously unselected package libxml2:armhf.
Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-7+nmu1_armhf.deb) ...
Selecting previously unselected package python2.7-minimal.
Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.5-5_armhf.deb) ...
Selecting previously unselected package libglib2.0-0:armhf.
Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.36.1-2build1_armhf.deb) ...
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Unpacking libcroco3:armhf (from .../libcroco3_0.6.8-2_armhf.deb) ...
Selecting previously unselected package libgfortran3:armhf.
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Selecting previously unselected package libexpat1-dev:armhf.
Unpacking libexpat1-dev:armhf (from .../libexpat1-dev_2.1.0-3_armhf.deb) ...
Selecting previously unselected package libpython2.7-dev.
Unpacking libpython2.7-dev (from .../libpython2.7-dev_2.7.5-5_armhf.deb) ...
Selecting previously unselected package libunistring0:armhf.
Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../file_1%3a5.14-2_armhf.deb) ...
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Selecting previously unselected package python2.7.
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Selecting previously unselected package python-minimal.
Unpacking python-minimal (from .../python-minimal_2.7.3-5_all.deb) ...
Selecting previously unselected package python.
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Unpacking python-support (from .../python-support_1.0.15_all.deb) ...
Selecting previously unselected package cython.
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Selecting previously unselected package gettext.
Unpacking gettext (from .../gettext_0.18.2.1-1_armhf.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
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Unpacking help2man (from .../help2man_1.43.2_armhf.deb) ...
Selecting previously unselected package libblas3.
Unpacking libblas3 (from .../libblas3_1.2.20110419-5_armhf.deb) ...
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Selecting previously unselected package python2.7-dev.
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Unpacking python-dev (from .../python-dev_2.7.3-5_all.deb) ...
Selecting previously unselected package python-numpy.
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Selecting previously unselected package sbuild-build-depends-macs-dummy.
Unpacking sbuild-build-depends-macs-dummy (from .../sbuild-build-depends-macs-dummy.deb) ...
Setting up libpipeline1:armhf (1.2.4-1) ...
Setting up libssl1.0.0:armhf (1.0.1e-2+rpi1) ...
Setting up groff-base (1.22.2-3) ...
Setting up bsdmainutils (9.0.5) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.6.3-7) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.18.2.1-1) ...
Setting up libmagic1:armhf (1:5.14-2) ...
Setting up libpython2.7-minimal (2.7.5-5) ...
Setting up mime-support (3.54) ...
update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
Setting up libexpat1:armhf (2.1.0-3) ...
Setting up libffi6:armhf (3.0.13-4) ...
Setting up libsqlite3-0:armhf (3.7.17-1) ...
Setting up libpython2.7-stdlib (2.7.5-5) ...
Setting up libpython2.7 (2.7.5-5) ...
Setting up libxml2:armhf (2.8.0+dfsg1-7+nmu1) ...
Setting up python2.7-minimal (2.7.5-5) ...
Setting up libglib2.0-0:armhf (2.36.1-2build1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-2) ...
Setting up libgfortran3:armhf (4.8.0-7+rpi1) ...
Setting up libexpat1-dev:armhf (2.1.0-3) ...
Setting up libpython2.7-dev (2.7.5-5) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up file (1:5.14-2) ...
Setting up gettext-base (0.18.2.1-1) ...
Setting up python2.7 (2.7.5-5) ...
Setting up python-minimal (2.7.3-5) ...
Setting up python (2.7.3-5) ...
Setting up python-support (1.0.15) ...
Setting up cython (0.19+git51-g3078752-1) ...
Setting up gettext (0.18.2.1-1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20130605) ...
Setting up help2man (1.43.2) ...
Setting up libblas3 (1.2.20110419-5) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up liblapack3 (3.4.2+dfsg-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up python2.7-dev (2.7.5-5) ...
Setting up python-dev (2.7.3-5) ...
Setting up python-numpy (1:1.7.1-2) ...
Setting up sbuild-build-depends-macs-dummy (0.invalid.0) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
Processing triggers for python-support ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.9.4-imx4 armhf (armv7l)
Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2+rpi1 gcc-4.6_4.6.4-2+rpi1 libc6-dev_2.17-3 libstdc++6_4.8.0-7+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 linux-libc-dev_3.2.41-2+rpi1
Package versions: apt_0.9.7.8+rpi1 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.4 build-essential_11.6 bzip2_1.0.6-4 coreutils_8.13-3.5 cpio_2.11+dfsg-1 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2+rpi1 cython_0.19+git51-g3078752-1 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130605 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-5 g++_4:4.6.3-8 g++-4.6_4.6.4-2+rpi1 gcc_4:4.6.3-8 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-2+rpi1 gcc-4.6-base_4.6.4-2+rpi1 gcc-4.7-base_4.7.3-4+rpi1 gcc-4.8-base_4.8.0-7+rpi1 gettext_0.18.2.1-1 gettext-base_0.18.2.1-1 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-2 groff-base_1.22.2-3 gzip_1.5-1.1 help2man_1.43.2 hostname_3.12 initramfs-tools_0.112 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.52-1 libapt-pkg4.12_0.9.7.8+rpi1 libasprintf0c2_0.18.2.1-1 libattr1_1:2.4.47-1 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.4 libbz2-1.0_1.0.6-4 libc-bin_2.17-3 libc-dev-bin_2.17-3 libc6_2.17-3 libc6-dev_2.17-3 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdb5.1_5.1.29-5 libdbus-1-3_1.6.10-1 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libexpat1-dev_2.1.0-3 libffi6_3.0.13-4 libgc1c2_1:7.1-9.1 libgcc1_1:4.8.0-7+rpi1 libgdbm3_1.8.3-12 libgfortran3_4.8.0-7+rpi1 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.1.2+dfsg-1 libgomp1_4.8.0-7+rpi1 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 liblapack3_3.4.2+dfsg-1 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmount1_2.20.1-5.4 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncursesw5_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpipeline1_1.2.4-1 libprocps0_1:3.3.4-2 libpython2.7_2.7.5-5 libpython2.7-dev_2.7.5-5 libpython2.7-minimal_2.7.5-5 libpython2.7-stdlib_2.7.5-5 libreadline6_6.2+dfsg-0.1 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libslang2_2.2.4-15 libsqlite3-0_3.7.17-1 libss2_1.42.5-1.1 libssl1.0.0_1.0.1e-2+rpi1 libstdc++6_4.8.0-7+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130504-1 libudev0_175-7.2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.4 libxml2_2.8.0+dfsg1-7+nmu1 linux-libc-dev_3.2.41-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1 make_3.81-8.2 makedev_2.3.1-93 man-db_2.6.3-7 mawk_1.3.3-17 mime-support_3.54 mount_2.20.1-5.4 multiarch-support_2.17-3 ncurses-base_5.9+20130504-1 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21+rpi1 perl-base_5.14.2-21+rpi1 perl-modules_5.14.2-21+rpi1 plymouth_0.8.8-6 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 python_2.7.3-5 python-dev_2.7.3-5 python-minimal_2.7.3-5 python-numpy_1:1.7.1-2 python-support_1.0.15 python2.7_2.7.5-5 python2.7-dev_2.7.5-5 python2.7-minimal_2.7.5-5 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-macs-dummy_0.invalid.0 sed_4.2.2-1 sensible-utils_0.0.7 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-6 tzdata_2013c-2 udev_175-7.2 util-linux_2.20.1-5.4 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Dec 19 21:36:24 2012 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./macs_2.0.9.1-1.dsc
dpkg-source: info: extracting macs in macs-2.0.9.1
dpkg-source: info: unpacking macs_2.0.9.1.orig.tar.gz
dpkg-source: info: unpacking macs_2.0.9.1-1.debian.tar.gz
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=POSIX
LOGNAME=root
LS_OPTIONS=--color=auto
MAIL=/var/mail/root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-27065a74-1306-433b-b95f-787b514ce83a
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=192.168.1.2 37387 22
SSH_CONNECTION=192.168.1.2 37387 192.168.1.45 22
SSH_TTY=/dev/pts/0
TERM=xterm
USER=root
XDG_SESSION_COOKIE=106ef489ba27ee071ab233f6518d3bce-1371982035.270857-1615796378
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package macs
dpkg-buildpackage: source version 2.0.9.1-1
dpkg-source --before-build macs-2.0.9.1
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_auto_clean
running clean
'build/lib.linux-armv7l-2.7' does not exist -- can't clean it
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
find -type f -name '*.c' -exec rm -f '{}' ';'
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_clean
debian/rules build-arch
dh build-arch --with python2
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
running build
running build_py
creating build
creating build/lib.linux-armv7l-2.7
creating build/lib.linux-armv7l-2.7/MACS2
copying MACS2/PeakModel.py -> build/lib.linux-armv7l-2.7/MACS2
copying MACS2/__init__.py -> build/lib.linux-armv7l-2.7/MACS2
copying MACS2/OutputWriter.py -> build/lib.linux-armv7l-2.7/MACS2
copying MACS2/OptValidator.py -> build/lib.linux-armv7l-2.7/MACS2
copying MACS2/Constants.py -> build/lib.linux-armv7l-2.7/MACS2
creating build/lib.linux-armv7l-2.7/MACS2/IO
copying MACS2/IO/__init__.py -> build/lib.linux-armv7l-2.7/MACS2/IO
copying MACS2/IO/WiggleIO.py -> build/lib.linux-armv7l-2.7/MACS2/IO
copying MACS2/IO/bedGraphIO.py -> build/lib.linux-armv7l-2.7/MACS2/IO
copying MACS2/IO/BinKeeper.py -> build/lib.linux-armv7l-2.7/MACS2/IO
running build_ext
cythoning MACS2/cProb.pyx to MACS2/cProb.c
building 'MACS2.cProb' extension
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/MACS2
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/cProb.c -o build/temp.linux-armv7l-2.7/MACS2/cProb.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/cProb.o -lm -o build/lib.linux-armv7l-2.7/MACS2/cProb.so
cythoning MACS2/IO/cParser.pyx to MACS2/IO/cParser.c
building 'MACS2.IO.cParser' extension
creating build/temp.linux-armv7l-2.7/MACS2/IO
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/cParser.c -o build/temp.linux-armv7l-2.7/MACS2/IO/cParser.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/cParser.o -o build/lib.linux-armv7l-2.7/MACS2/IO/cParser.so
cythoning MACS2/cPileup.pyx to MACS2/cPileup.c
warning: MACS2/cPileup.pyx:134:12: Unreachable code
building 'MACS2.cPileup' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/cPileup.c -o build/temp.linux-armv7l-2.7/MACS2/cPileup.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/cPileup.o -o build/lib.linux-armv7l-2.7/MACS2/cPileup.so
cythoning MACS2/cPeakDetect.pyx to MACS2/cPeakDetect.c
building 'MACS2.cPeakDetect' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/cPeakDetect.c -o build/temp.linux-armv7l-2.7/MACS2/cPeakDetect.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/cPeakDetect.o -o build/lib.linux-armv7l-2.7/MACS2/cPeakDetect.so
cythoning MACS2/IO/cPeakIO.pyx to MACS2/IO/cPeakIO.c
building 'MACS2.IO.cPeakIO' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/cPeakIO.c -o build/temp.linux-armv7l-2.7/MACS2/IO/cPeakIO.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/cPeakIO.o -o build/lib.linux-armv7l-2.7/MACS2/IO/cPeakIO.so
cythoning MACS2/IO/cFixWidthTrack.pyx to MACS2/IO/cFixWidthTrack.c
building 'MACS2.IO.cFixWidthTrack' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/cFixWidthTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/cFixWidthTrack.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/cFixWidthTrack.o -o build/lib.linux-armv7l-2.7/MACS2/IO/cFixWidthTrack.so
cythoning MACS2/IO/cBedGraph.pyx to MACS2/IO/cBedGraph.c
building 'MACS2.IO.cBedGraph' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/cBedGraph.c -o build/temp.linux-armv7l-2.7/MACS2/IO/cBedGraph.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/cBedGraph.o -lm -o build/lib.linux-armv7l-2.7/MACS2/IO/cBedGraph.so
cythoning MACS2/IO/cScoreTrack.pyx to MACS2/IO/cScoreTrack.c
building 'MACS2.IO.cScoreTrack' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/cScoreTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/cScoreTrack.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/cScoreTrack.o -o build/lib.linux-armv7l-2.7/MACS2/IO/cScoreTrack.so
cythoning MACS2/IO/cCompositeScoreTrack.pyx to MACS2/IO/cCompositeScoreTrack.c
building 'MACS2.IO.cCompositeScoreTrack' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/cCompositeScoreTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/cCompositeScoreTrack.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/cCompositeScoreTrack.o -o build/lib.linux-armv7l-2.7/MACS2/IO/cCompositeScoreTrack.so
running build_scripts
creating build/scripts-2.7
copying and adjusting bin/macs2 -> build/scripts-2.7
copying and adjusting bin/macs2diff -> build/scripts-2.7
copying and adjusting bin/filterdup -> build/scripts-2.7
copying and adjusting bin/randsample -> build/scripts-2.7
copying and adjusting bin/bdgdiff -> build/scripts-2.7
copying and adjusting bin/bdgcmp -> build/scripts-2.7
copying and adjusting bin/bdgpeakcall -> build/scripts-2.7
copying and adjusting bin/bdgbroadcall -> build/scripts-2.7
changing mode of build/scripts-2.7/macs2 from 664 to 775
changing mode of build/scripts-2.7/macs2diff from 664 to 775
changing mode of build/scripts-2.7/filterdup from 664 to 775
changing mode of build/scripts-2.7/randsample from 664 to 775
changing mode of build/scripts-2.7/bdgdiff from 664 to 775
changing mode of build/scripts-2.7/bdgcmp from 664 to 775
changing mode of build/scripts-2.7/bdgpeakcall from 664 to 775
changing mode of build/scripts-2.7/bdgbroadcall from 664 to 775
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch --with python2
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_auto_install
running install
running build
running build_py
running build_ext
skipping 'MACS2/cProb.c' Cython extension (up-to-date)
skipping 'MACS2/IO/cParser.c' Cython extension (up-to-date)
skipping 'MACS2/cPileup.c' Cython extension (up-to-date)
skipping 'MACS2/cPeakDetect.c' Cython extension (up-to-date)
skipping 'MACS2/IO/cPeakIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/cFixWidthTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/cBedGraph.c' Cython extension (up-to-date)
skipping 'MACS2/IO/cScoreTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/cCompositeScoreTrack.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /«PKGBUILDDIR»/debian/macs/usr
creating /«PKGBUILDDIR»/debian/macs/usr/lib
creating /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7
creating /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages
creating /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying build/lib.linux-armv7l-2.7/MACS2/PeakModel.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying build/lib.linux-armv7l-2.7/MACS2/__init__.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying build/lib.linux-armv7l-2.7/MACS2/OutputWriter.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying build/lib.linux-armv7l-2.7/MACS2/OptValidator.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying build/lib.linux-armv7l-2.7/MACS2/Constants.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
creating /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying build/lib.linux-armv7l-2.7/MACS2/IO/__init__.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying build/lib.linux-armv7l-2.7/MACS2/IO/WiggleIO.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying build/lib.linux-armv7l-2.7/MACS2/IO/bedGraphIO.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying build/lib.linux-armv7l-2.7/MACS2/IO/BinKeeper.py -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying build/lib.linux-armv7l-2.7/MACS2/IO/cParser.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying build/lib.linux-armv7l-2.7/MACS2/IO/cPeakIO.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying build/lib.linux-armv7l-2.7/MACS2/IO/cFixWidthTrack.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying build/lib.linux-armv7l-2.7/MACS2/IO/cBedGraph.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying build/lib.linux-armv7l-2.7/MACS2/IO/cScoreTrack.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying build/lib.linux-armv7l-2.7/MACS2/IO/cCompositeScoreTrack.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying build/lib.linux-armv7l-2.7/MACS2/cProb.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying build/lib.linux-armv7l-2.7/MACS2/cPileup.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying build/lib.linux-armv7l-2.7/MACS2/cPeakDetect.so -> /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS2
running install_scripts
creating /«PKGBUILDDIR»/debian/macs/usr/bin
copying build/scripts-2.7/macs2 -> /«PKGBUILDDIR»/debian/macs/usr/bin
copying build/scripts-2.7/macs2diff -> /«PKGBUILDDIR»/debian/macs/usr/bin
copying build/scripts-2.7/filterdup -> /«PKGBUILDDIR»/debian/macs/usr/bin
copying build/scripts-2.7/randsample -> /«PKGBUILDDIR»/debian/macs/usr/bin
copying build/scripts-2.7/bdgdiff -> /«PKGBUILDDIR»/debian/macs/usr/bin
copying build/scripts-2.7/bdgcmp -> /«PKGBUILDDIR»/debian/macs/usr/bin
copying build/scripts-2.7/bdgpeakcall -> /«PKGBUILDDIR»/debian/macs/usr/bin
copying build/scripts-2.7/bdgbroadcall -> /«PKGBUILDDIR»/debian/macs/usr/bin
changing mode of /«PKGBUILDDIR»/debian/macs/usr/bin/macs2 to 775
changing mode of /«PKGBUILDDIR»/debian/macs/usr/bin/macs2diff to 775
changing mode of /«PKGBUILDDIR»/debian/macs/usr/bin/filterdup to 775
changing mode of /«PKGBUILDDIR»/debian/macs/usr/bin/randsample to 775
changing mode of /«PKGBUILDDIR»/debian/macs/usr/bin/bdgdiff to 775
changing mode of /«PKGBUILDDIR»/debian/macs/usr/bin/bdgcmp to 775
changing mode of /«PKGBUILDDIR»/debian/macs/usr/bin/bdgpeakcall to 775
changing mode of /«PKGBUILDDIR»/debian/macs/usr/bin/bdgbroadcall to 775
running install_egg_info
Writing /«PKGBUILDDIR»/debian/macs/usr/lib/python2.7/dist-packages/MACS-2.0.9.egg-info
# try to create man pages whereever possible
mkdir -p /«PKGBUILDDIR»/debian/macs/usr/share/man/man1/
export PYTHONPATH=/«PKGBUILDDIR»/build/`ls build | grep ^lib\. | head -n 1` ; \
export PATH=/«PKGBUILDDIR»/build/`ls build | grep ^scripts- | head -n 1`:${PATH} ; \
help2man --no-info --name='Fine-tuning script to call broad peaks from a single bedGraph track for scores' \
--version-string="2.0.9.1" \
bdgbroadcall > /«PKGBUILDDIR»/debian/macs/usr/share/man/man1//bdgbroadcall.1 ; \
help2man --no-info --name='Calculate scores using certain method by comparing a bedGraph file from treatment and a file from control representing local bias' \
--version-string="2.0.9.1" \
bdgcmp > /«PKGBUILDDIR»/debian/macs/usr/share/man/man1//bdgcmp.1 ; \
help2man --no-info --name='Naive call differential peaks from 4 bedGraph tracks for scores' \
--version-string="2.0.9.1" \
bdgdiff > /«PKGBUILDDIR»/debian/macs/usr/share/man/man1//bdgdiff.1 ; \
help2man --no-info --name='Naive call peaks from a single bedGraph track for scores' \
--version-string="2.0.9.1" \
bdgpeakcall > /«PKGBUILDDIR»/debian/macs/usr/share/man/man1//bdgpeakcall.1 ; \
help2man --no-info --name='Filter duplicate reads depending on sequencing depth' \
--version-string="2.0.9.1" \
filterdup > /«PKGBUILDDIR»/debian/macs/usr/share/man/man1//filterdup.1 ; \
help2man --no-info --name='Model-based Analysis for ChIP-Sequencing' \
--version-string="2.0.9.1" \
macs2 > /«PKGBUILDDIR»/debian/macs/usr/share/man/man1//macs2.1 ; \
help2man --no-info --name='Differential Analysis for ChIP-Sequencing' \
--version-string="2.0.9.1" \
macs2diff > /«PKGBUILDDIR»/debian/macs/usr/share/man/man1//macs2diff.1 ; \
help2man --no-info --name='Random sample certain number/percentage of tags' \
--version-string="2.0.9.1" \
randsample > /«PKGBUILDDIR»/debian/macs/usr/share/man/man1//randsample.1
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_python2 -a
dh_perl -a
dh_link -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/macs/usr/lib/python2.7/dist-packages/MACS2/cPileup.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/cPeakDetect.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/cScoreTrack.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/cParser.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/cFixWidthTrack.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/cBedGraph.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/cPeakIO.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/cCompositeScoreTrack.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/cProb.so were not linked against libpthread.so.0 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package macs: unused substitution variable ${python:Versions}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package `macs' in `../macs_2.0.9.1-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../macs_2.0.9.1-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: warning: the current version (2.0.9.1-1) is earlier than the previous one (2.0.9.1-1ubuntu3)
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build macs-2.0.9.1
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20130627-0001
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
macs_2.0.9.1-1_armhf.changes:
─────────────────────────────
Format: 1.8
Date: Wed, 19 Dec 2012 19:32:44 +0100
Source: macs
Binary: macs
Architecture: armhf
Version: 2.0.9.1-1
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Closes: 696331
Changes:
macs (2.0.9.1-1) unstable; urgency=low
.
* Initial upload to Debian (Closes: #696331)
* debian/control:
- Adaptations to Debian Med team maintenance
- X-Python-Version: >=2.7 because build fails
for Python 2.6
- Standards-Version: 3.9.4 (no changes needed)
- Priority: optional
* debian/watch: Removed useless comments
* debian/README.*: Removed unused dh-make templates
* debian/copyright: Added some missing information
* debian/rules:
- Removed useless dh-make comment
- use dh_python2
- use help2man to create manpages
* debhelper 9 (control+compat)
Checksums-Sha1:
6555cdc23b07d420502c783fc76f06ea9dbba3af 529828 macs_2.0.9.1-1_armhf.deb
Checksums-Sha256:
82bad3c2a7e6c4b6b2da74a8b7561071d88ffb87b61144442f30c8c45bea6cc2 529828 macs_2.0.9.1-1_armhf.deb
Files:
24d1d0a0b413a54df8b88f1b4c9ad683 529828 science optional macs_2.0.9.1-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
macs_2.0.9.1-1_armhf.deb
────────────────────────
new debian package, version 2.0.
size 529828 bytes: control archive=2164 bytes.
937 bytes, 18 lines control
2749 bytes, 39 lines md5sums
154 bytes, 9 lines * postinst #!/bin/sh
245 bytes, 14 lines * prerm #!/bin/sh
Package: macs
Version: 2.0.9.1-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1446
Depends: libc6 (>= 2.4), python (>= 2.7), python (<< 2.8), python-numpy
Section: science
Priority: optional
Homepage: https://github.com/taoliu/MACS/
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
drwxr-xr-x root/root 0 2013-06-27 00:01 ./
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/lib/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/IO/
-rw-r--r-- root/root 232484 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/IO/cParser.so
-rw-r--r-- root/root 162532 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/IO/cPeakIO.so
-rw-r--r-- root/root 115460 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/IO/cFixWidthTrack.so
-rw-r--r-- root/root 204584 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/IO/cBedGraph.so
-rw-r--r-- root/root 152680 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/IO/cScoreTrack.so
-rw-r--r-- root/root 182548 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/IO/cCompositeScoreTrack.so
-rw-r--r-- root/root 49476 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/cProb.so
-rw-r--r-- root/root 45072 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/cPileup.so
-rw-r--r-- root/root 164608 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/cPeakDetect.so
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/python2.7/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/python2.7/MACS2/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/python2.7/MACS2/IO/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/bin/
-rwxr-xr-x root/root 21268 2013-06-27 00:01 ./usr/bin/macs2
-rwxr-xr-x root/root 20686 2013-06-27 00:01 ./usr/bin/macs2diff
-rwxr-xr-x root/root 7198 2013-06-27 00:01 ./usr/bin/filterdup
-rwxr-xr-x root/root 6072 2013-06-27 00:01 ./usr/bin/randsample
-rwxr-xr-x root/root 5855 2013-06-27 00:01 ./usr/bin/bdgdiff
-rwxr-xr-x root/root 3701 2013-06-27 00:01 ./usr/bin/bdgcmp
-rwxr-xr-x root/root 3621 2013-06-27 00:01 ./usr/bin/bdgpeakcall
-rwxr-xr-x root/root 4630 2013-06-27 00:01 ./usr/bin/bdgbroadcall
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/share/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/share/man/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/share/man/man1/
-rw-r--r-- root/root 858 2013-06-27 00:01 ./usr/share/man/man1/bdgbroadcall.1.gz
-rw-r--r-- root/root 717 2013-06-27 00:01 ./usr/share/man/man1/bdgcmp.1.gz
-rw-r--r-- root/root 787 2013-06-27 00:01 ./usr/share/man/man1/bdgdiff.1.gz
-rw-r--r-- root/root 698 2013-06-27 00:01 ./usr/share/man/man1/bdgpeakcall.1.gz
-rw-r--r-- root/root 1259 2013-06-27 00:01 ./usr/share/man/man1/filterdup.1.gz
-rw-r--r-- root/root 2774 2013-06-27 00:01 ./usr/share/man/man1/macs2.1.gz
-rw-r--r-- root/root 2404 2013-06-27 00:01 ./usr/share/man/man1/macs2diff.1.gz
-rw-r--r-- root/root 1011 2013-06-27 00:01 ./usr/share/man/man1/randsample.1.gz
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/share/doc/macs/
-rw-r--r-- root/root 630 2012-12-11 10:41 ./usr/share/doc/macs/copyright
-rw-r--r-- root/root 9709 2011-11-02 19:40 ./usr/share/doc/macs/README.gz
-rw-r--r-- root/root 621 2012-12-19 20:52 ./usr/share/doc/macs/changelog.Debian.gz
-rw-r--r-- root/root 9553 2011-11-02 19:40 ./usr/share/doc/macs/changelog.gz
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/share/pyshared/
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/share/pyshared/MACS2/
-rw-r--r-- root/root 13173 2011-09-02 18:20 ./usr/share/pyshared/MACS2/PeakModel.py
-rw-r--r-- root/root 17 2011-09-02 18:20 ./usr/share/pyshared/MACS2/__init__.py
-rw-r--r-- root/root 10735 2011-09-02 18:20 ./usr/share/pyshared/MACS2/OutputWriter.py
-rw-r--r-- root/root 16488 2011-11-02 19:40 ./usr/share/pyshared/MACS2/OptValidator.py
-rw-r--r-- root/root 822 2011-11-02 19:40 ./usr/share/pyshared/MACS2/Constants.py
drwxr-xr-x root/root 0 2013-06-27 00:01 ./usr/share/pyshared/MACS2/IO/
-rw-r--r-- root/root 0 2011-09-02 18:20 ./usr/share/pyshared/MACS2/IO/__init__.py
-rw-r--r-- root/root 7668 2011-09-02 18:20 ./usr/share/pyshared/MACS2/IO/WiggleIO.py
-rw-r--r-- root/root 2477 2011-11-02 19:40 ./usr/share/pyshared/MACS2/IO/bedGraphIO.py
-rw-r--r-- root/root 11086 2011-09-02 18:20 ./usr/share/pyshared/MACS2/IO/BinKeeper.py
-rw-r--r-- root/root 664 2013-06-27 00:01 ./usr/share/pyshared/MACS-2.0.9.egg-info
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/IO/BinKeeper.py -> ../../../../../share/pyshared/MACS2/IO/BinKeeper.py
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/IO/bedGraphIO.py -> ../../../../../share/pyshared/MACS2/IO/bedGraphIO.py
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/IO/WiggleIO.py -> ../../../../../share/pyshared/MACS2/IO/WiggleIO.py
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/IO/__init__.py -> ../../../../../share/pyshared/MACS2/IO/__init__.py
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/Constants.py -> ../../../../share/pyshared/MACS2/Constants.py
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/OptValidator.py -> ../../../../share/pyshared/MACS2/OptValidator.py
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py -> ../../../../share/pyshared/MACS2/OutputWriter.py
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/__init__.py -> ../../../../share/pyshared/MACS2/__init__.py
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS2/PeakModel.py -> ../../../../share/pyshared/MACS2/PeakModel.py
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/python2.7/dist-packages/MACS-2.0.9.egg-info -> ../../../share/pyshared/MACS-2.0.9.egg-info
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/python2.7/MACS2/IO/cCompositeScoreTrack.so -> ../../../../python2.7/dist-packages/MACS2/IO/cCompositeScoreTrack.so
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/python2.7/MACS2/IO/cScoreTrack.so -> ../../../../python2.7/dist-packages/MACS2/IO/cScoreTrack.so
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/python2.7/MACS2/IO/cBedGraph.so -> ../../../../python2.7/dist-packages/MACS2/IO/cBedGraph.so
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/python2.7/MACS2/IO/cFixWidthTrack.so -> ../../../../python2.7/dist-packages/MACS2/IO/cFixWidthTrack.so
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/python2.7/MACS2/IO/cPeakIO.so -> ../../../../python2.7/dist-packages/MACS2/IO/cPeakIO.so
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/python2.7/MACS2/IO/cParser.so -> ../../../../python2.7/dist-packages/MACS2/IO/cParser.so
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/python2.7/MACS2/cPeakDetect.so -> ../../../python2.7/dist-packages/MACS2/cPeakDetect.so
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/python2.7/MACS2/cPileup.so -> ../../../python2.7/dist-packages/MACS2/cPileup.so
lrwxrwxrwx root/root 0 2013-06-27 00:01 ./usr/lib/pyshared/python2.7/MACS2/cProb.so -> ../../../python2.7/dist-packages/MACS2/cProb.so
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 18488
Build-Time: 468
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 242
Job: macs_2.0.9.1-1
Machine Architecture: armhf
Package: macs
Package-Time: 771
Source-Version: 2.0.9.1-1
Space: 18488
Status: successful
Version: 2.0.9.1-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20130627-0001
Build needed 00:12:51, 18488k disc space