libtfbs-perl →
0.7.1-3+b2 →
armhf → 2020-11-21 13:02:40
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| libtfbs-perl 0.7.1-3+b2 (armhf) Sat, 21 Nov 2020 12:57:17 +0000 |
+==============================================================================+
Package: libtfbs-perl
Version: 0.7.1-3+b2
Source Version: 0.7.1-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-1583b88f-ab61-4d41-b13e-460f08fbbc25' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.8 MB in 9s (2873 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libtfbs-perl' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libtfbs-perl.git
Please use:
git clone https://salsa.debian.org/med-team/libtfbs-perl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 397 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main libtfbs-perl 0.7.1-3 (dsc) [2207 B]
Get:2 http://172.17.0.1/private bullseye-staging/main libtfbs-perl 0.7.1-3 (tar) [388 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main libtfbs-perl 0.7.1-3 (diff) [6268 B]
Fetched 397 kB in 0s (1371 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libtfbs-perl-DtHy1f/libtfbs-perl-0.7.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libtfbs-perl-DtHy1f' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-BgGaGQ/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-BgGaGQ/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (9533 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 9 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (66.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12594 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), perl, pdl (>= 1:2.016), bioperl, libwww-perl, libdbi-perl
Filtered Build-Depends: debhelper-compat (= 12), perl, pdl (>= 1:2.016), bioperl, libwww-perl, libdbi-perl
dpkg-deb: building package 'sbuild-build-depends-libtfbs-perl-dummy' in '/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive/sbuild-build-depends-libtfbs-perl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libtfbs-perl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive ./ Sources [527 B]
Get:5 copy:/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive ./ Packages [609 B]
Fetched 2469 B in 0s (11.1 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libtfbs-perl build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bioperl ca-certificates debhelper
dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core gettext gettext-base groff-base intltool-debian
libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libbrotli1
libbsd0 libcapture-tiny-perl libclass-data-inheritable-perl libcroco3
libdata-stag-perl libdbi-perl libdebhelper-perl libdevel-stacktrace-perl
libelf1 libencode-locale-perl libexception-class-perl libexpat1
libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libgd3 libgfortran5 libglib2.0-0 libgsl25 libgslcblas0
libhdf4-0-alt libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
libhttp-negotiate-perl libicu67 libio-html-perl libio-socket-ssl-perl
libio-string-perl libjbig0 libjpeg62-turbo liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic-mgc libmagic1 libncurses6
libnet-http-perl libnet-ssleay-perl libpipeline1 libpng16-16
libpod-parser-perl libsigsegv2 libssl1.1 libsub-override-perl
libsub-uplevel-perl libterm-readkey-perl libtest-deep-perl
libtest-differences-perl libtest-exception-perl libtest-most-perl
libtest-warn-perl libtext-diff-perl libtiff5 libtimedate-perl libtool
libtry-tiny-perl libuchardet0 liburi-perl libwebp6 libwww-perl
libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxml2 libxpm4 m4 man-db openssl pdl perl-openssl-defaults po-debconf ucf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libxml-sax-expatxs-perl libclone-perl
libmldbm-perl libnet-daemon-perl libsql-statement-perl libgd-tools
gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libhdf4-doc
libhdf4-alt-dev hdf4-tools libdata-dump-perl libcrypt-ssleay-perl
libtool-doc gfortran | fortran95-compiler gcj-jdk libauthen-ntlm-perl m4-doc
apparmor less www-browser doc-base libastro-fits-header-perl
libdevel-repl-perl libextutils-f77-perl libfile-map-perl libgl1-mesa-glx
| libgl1 libinline-perl libinline-c-perl libmodule-compile-perl
libopengl-perl libpdl-fftw-perl libpdl-graphics-plplot-perl libpgplot-perl
netpbm | imagemagick proj-bin libmail-box-perl
Recommended packages:
bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libgd-gd2-perl
libapache-dbi-perl libxml-simple-perl libyaml-perl libace-perl
liblist-moreutils-perl libxml-twig-perl libset-scalar-perl curl | wget
| lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl
libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl
libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl
libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl
libsort-naturally-perl libspreadsheet-parseexcel-perl
libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl
libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl
libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk
libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl
libxml-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libhtml-format-perl libgpm2 libltdl-dev libdata-dump-perl
libhtml-form-perl libhttp-daemon-perl libmailtools-perl
libterm-readline-gnu-perl | libterm-readline-perl-perl libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bioperl ca-certificates debhelper
dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core gettext gettext-base groff-base intltool-debian
libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libbrotli1
libbsd0 libcapture-tiny-perl libclass-data-inheritable-perl libcroco3
libdata-stag-perl libdbi-perl libdebhelper-perl libdevel-stacktrace-perl
libelf1 libencode-locale-perl libexception-class-perl libexpat1
libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libgd3 libgfortran5 libglib2.0-0 libgsl25 libgslcblas0
libhdf4-0-alt libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
libhttp-negotiate-perl libicu67 libio-html-perl libio-socket-ssl-perl
libio-string-perl libjbig0 libjpeg62-turbo liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic-mgc libmagic1 libncurses6
libnet-http-perl libnet-ssleay-perl libpipeline1 libpng16-16
libpod-parser-perl libsigsegv2 libssl1.1 libsub-override-perl
libsub-uplevel-perl libterm-readkey-perl libtest-deep-perl
libtest-differences-perl libtest-exception-perl libtest-most-perl
libtest-warn-perl libtext-diff-perl libtiff5 libtimedate-perl libtool
libtry-tiny-perl libuchardet0 liburi-perl libwebp6 libwww-perl
libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxml2 libxpm4 m4 man-db openssl pdl perl-openssl-defaults po-debconf
sbuild-build-depends-libtfbs-perl-dummy ucf
0 upgraded, 101 newly installed, 0 to remove and 9 not upgraded.
Need to get 36.1 MB of archives.
After this operation, 122 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-BgGaGQ/apt_archive ./ sbuild-build-depends-libtfbs-perl-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libterm-readkey-perl armhf 2.38-1+b3 [26.6 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpod-parser-perl all 1.63-2 [96.1 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-4 [345 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.12-1 [311 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.12-1 [700 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libgd3 armhf 2.3.0-2 [116 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-16+rpi1 [232 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libgslcblas0 armhf 2.6+dfsg-2 [79.5 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libgsl25 armhf 2.6+dfsg-2 [753 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libhdf4-0-alt armhf 4.2.15-3 [239 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20200918-1 [79.5 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf pdl armhf 1:2.021-2+b1 [3340 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libio-string-perl all 1.08-3 [12.3 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libdata-stag-perl all 0.14-2 [448 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libbio-perl-perl all 1.7.7-2 [2607 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libexception-class-perl all 1.44-1 [32.3 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libtest-deep-perl all 1.130-1 [49.3 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libalgorithm-diff-perl all 1.200-1 [43.1 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libtext-diff-perl all 1.45-1 [27.7 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libtest-differences-perl all 0.67-1 [18.7 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libsub-uplevel-perl all 0.2800-1 [16.3 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libtest-exception-perl all 0.43-1 [18.7 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libtest-warn-perl all 0.36-1 [16.2 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libtest-most-perl all 0.37-1 [24.9 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf bioperl all 1.7.7-2 [246 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1h-1 [1271 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1h-1 [812 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20200601 [158 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.2-1 [1176 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.2 [578 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libdbi-perl armhf 1.643-3+b1 [770 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libencode-locale-perl all 1.05-1 [13.7 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libtimedate-perl all 2.3300-1 [39.2 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libfile-listing-perl all 6.11-1 [11.2 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libhtml-tagset-perl all 3.20-4 [13.0 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf liburi-perl all 5.05-1 [90.3 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libhtml-parser-perl armhf 3.75-1+b1 [102 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libhtml-tree-perl all 5.07-2 [213 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libio-html-perl all 1.001-1 [17.6 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libhttp-message-perl all 6.26-1 [79.4 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libhttp-cookies-perl all 6.08-1 [19.3 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf perl-openssl-defaults armhf 5 [7360 B]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libnet-ssleay-perl armhf 1.88-3+b1 [300 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libio-socket-ssl-perl all 2.068-1 [215 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libnet-http-perl all 6.19-1 [24.8 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libwww-perl all 6.49-1 [192 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf liblwp-protocol-https-perl all 6.09-1 [12.0 kB]
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Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libio-html-perl (1.001-1) ...
Setting up libpod-parser-perl (1.63-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up ucf (3.0043) ...
Setting up libgfortran5:armhf (10.2.0-16+rpi1) ...
Setting up libhdf4-0-alt (4.2.15-3) ...
Setting up libcapture-tiny-perl (0.48-1) ...
Setting up libtimedate-perl (2.3300-1) ...
Setting up libdata-stag-perl (0.14-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-uplevel-perl (0.2800-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libdevel-stacktrace-perl (2.0400-1) ...
Setting up libtiff5:armhf (4.1.0+git191117-2) ...
Setting up libbio-perl-perl (1.7.7-2) ...
Setting up libterm-readkey-perl (2.38-1+b3) ...
Setting up openssl (1.1.1h-1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libelf1:armhf (0.182-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.2) ...
Setting up liburi-perl (5.05-1) ...
Setting up libdbi-perl:armhf (1.643-3+b1) ...
Setting up libnet-ssleay-perl (1.88-3+b1) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libxcb1:armhf (1.14-2) ...
Setting up libfile-listing-perl (6.11-1) ...
Setting up libtool (2.4.6-14) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up libtest-warn-perl (0.36-1) ...
Setting up libtest-differences-perl (0.67-1) ...
Setting up libnet-http-perl (6.19-1) ...
Setting up m4 (1.4.18-4) ...
Setting up libexception-class-perl (1.44-1) ...
Setting up ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
126 added, 0 removed; done.
Setting up libtest-exception-perl (0.43-1) ...
Setting up libfreetype6:armhf (2.10.2+dfsg-4) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up libhtml-parser-perl (3.75-1+b1) ...
Setting up libx11-6:armhf (2:1.6.12-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up libio-socket-ssl-perl (2.068-1) ...
Setting up libhttp-message-perl (6.26-1) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhttp-negotiate-perl (6.01-1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libxpm4:armhf (1:3.5.12-1) ...
Setting up libhttp-cookies-perl (6.08-1) ...
Setting up libtest-most-perl (0.37-1) ...
Setting up libhtml-tree-perl (5.07-2) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libgd3:armhf (2.3.0-2) ...
Setting up bioperl (1.7.7-2) ...
Setting up po-debconf (1.0.21) ...
Setting up pdl (1:2.021-2+b1) ...
Setting up libwww-perl (6.49-1) ...
Setting up dh-autoreconf (19) ...
Setting up liblwp-protocol-https-perl (6.09-1) ...
Setting up debhelper (13.2.1) ...
Setting up sbuild-build-depends-libtfbs-perl-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-4+rpi1) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-16+rpi1 gcc-10_10.2.0-16+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.11 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc2-1 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bioperl_1.7.7-2 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-16+rpi1 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0+git20201010-2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-16+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-16+rpi1 gcc-10-base_10.2.0-16+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 libacl1_2.2.53-8 libalgorithm-diff-perl_1.200-1 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan6_10.2.0-16+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-16+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-2+rpi1 libbio-perl-perl_1.7.7-2 libblkid1_2.36-3 libboost-iostreams1.71.0_1.71.0-7 libbrotli1_1.0.9-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcapture-tiny-perl_0.48-1 libcc1-0_10.2.0-16+rpi1 libclass-data-inheritable-perl_0.08-3 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcwidget4_0.5.18-5 libdata-stag-perl_0.14-2 libdb5.3_5.3.28+dfsg1-0.6 libdbi-perl_1.643-3+b1 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdevel-stacktrace-perl_2.0400-1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-1 libencode-locale-perl_1.05-1 libexception-class-perl_1.44-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libfdisk1_2.36-3 libffi7_3.3-5 libfile-listing-perl_6.11-1 libfile-stripnondeterminism-perl_1.9.0-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.2+dfsg-4 libgcc-10-dev_10.2.0-16+rpi1 libgcc-s1_10.2.0-16+rpi1 libgcrypt20_1.8.7-2 libgd3_2.3.0-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-16+rpi1 libglib2.0-0_2.66.2-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-16+rpi1 libgpg-error0_1.38-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libhdf4-0-alt_4.2.15-3 libhogweed6_3.6-2 libhtml-parser-perl_3.75-1+b1 libhtml-tagset-perl_3.20-4 libhtml-tree-perl_5.07-2 libhttp-cookies-perl_6.08-1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.26-1 libhttp-negotiate-perl_6.01-1 libicu67_67.1-4 libidn2-0_2.3.0-3 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.068-1 libio-string-perl_1.08-3 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.5-1.1 libksba8_1.4.0-2 libldap-2.4-2_2.4.56+dfsg-1 libldap-common_2.4.56+dfsg-1 liblwp-mediatypes-perl_6.04-1 liblwp-protocol-https-perl_6.09-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnet-http-perl_6.19-1 libnet-ssleay-perl_1.88-3+b1 libnettle8_3.6-2 libnpth0_1.6-3 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libpod-parser-perl_1.63-2 libreadline8_8.1~rc2-2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 libsub-override-perl_0.09-2 libsub-uplevel-perl_0.2800-1 libsystemd0_246.6-2+rpi1 libtasn1-6_4.16.0-2 libterm-readkey-perl_2.38-1+b3 libtest-deep-perl_1.130-1 libtest-differences-perl_0.67-1 libtest-exception-perl_0.43-1 libtest-most-perl_0.37-1 libtest-warn-perl_0.36-1 libtext-diff-perl_1.45-1 libtiff5_4.1.0+git191117-2 libtimedate-perl_2.3300-1 libtinfo6_6.2+20200918-1 libtool_2.4.6-14 libtry-tiny-perl_0.30-1 libubsan1_10.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-2+rpi1 libunistring2_0.9.10-4 liburi-perl_5.05-1 libuuid1_2.36-3 libwebp6_0.6.1-2 libwww-perl_6.49-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libxapian30_1.4.17-1 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxml2_2.9.10+dfsg-6.2 libxpm4_1:3.5.12-1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.2 openssl_1.1.1h-1 passwd_1:4.8.1-1 patch_2.7.6-6 pdl_1:2.021-2+b1 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 perl-openssl-defaults_5 pinentry-curses_1.1.0-4 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libtfbs-perl-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 ucf_3.0043 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.7TmPYOka/trustedkeys.kbx': General error
gpgv: Signature made Thu Sep 19 15:40:03 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libtfbs-perl_0.7.1-3.dsc
dpkg-source: info: extracting libtfbs-perl in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libtfbs-perl_0.7.1.orig.tar.gz
dpkg-source: info: unpacking libtfbs-perl_0.7.1-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying spelling-errors.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.7.1-3+b2
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-1583b88f-ab61-4d41-b13e-460f08fbbc25
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libtfbs-perl
dpkg-buildpackage: info: source version 0.7.1-3+b2
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm --force Makefile Makefile.old
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "n" | perl Makefile.PL INSTALLDIRS=vendor
-------------------------------------------------
WARNING
-------------------------------------------------
GD.pm does not seem to be installed.
GD is reqired to produce "sequence logos" from
information content matrices. If you need this
functionality, please visit
http://stein.cshl.org/WWW/software/GD/
for information on obtaining and installing GD.
-------------------------------------------------
Do you have write access to a MySQL database server? [n] Checking if your kit is complete...
Warning: the following files are missing in your kit:
README
Please inform the author.
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for TFBS
Writing MYMETA.yml and MYMETA.json
/usr/bin/make OPTIMIZE="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security" LD_RUN_PATH="" OTHERLDFLAGS="-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm
Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged)
cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm
cp TFBS/DB/JASPAR7.pm blib/lib/TFBS/DB/JASPAR7.pm
cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm
cp TFBS/Matrix/ICM.pm blib/lib/TFBS/Matrix/ICM.pm
cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm
cp TFBS/README.md blib/lib/TFBS/README.md
Skip blib/lib/TFBS/PatternGen/Gibbs.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/MEME.pm (unchanged)
Skip blib/lib/TFBS/SitePairSet.pm (unchanged)
Skip blib/lib/TFBS/Matrix/PWM.pm (unchanged)
cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm
Skip blib/lib/TFBS/Site.pm (unchanged)
cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm
Skip blib/lib/TFBS/PatternI.pm (unchanged)
cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm
cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm
Skip blib/lib/TFBS/PatternGenI.pm (unchanged)
Skip blib/lib/TFBS/DB/JASPAR2.pm (unchanged)
cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm
Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged)
Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged)
Skip blib/lib/TFBS/SiteSet.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm (unchanged)
Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged)
Skip blib/lib/TFBS/DB.pm (unchanged)
Skip blib/lib/TFBS/DB/LocalTRANSFAC.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Gibbs/Motif.pm (unchanged)
cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm
cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm
Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/SimplePFM.pm (unchanged)
cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm
cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm
cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm
Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged)
cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm
cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm
Skip blib/lib/TFBS/PatternGen/Elph.pm (unchanged)
cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm
Skip blib/lib/TFBS/_Iterator.pm (unchanged)
cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm
Skip blib/lib/TFBS/Word/Consensus.pm (unchanged)
Skip blib/lib/TFBS/Word.pm (unchanged)
cp TFBS/_Iterator/_MatrixSetIterator.pm blib/lib/TFBS/_Iterator/_MatrixSetIterator.pm
make[3]: Entering directory '/<<PKGBUILDDIR>>/Ext'
cp lib/pwm_searchPFF.c ../blib/lib/pwm_searchPFF.c
Skip ../blib/lib/pwm_search.h (unchanged)
Skip ../blib/lib/TFBS/Ext/pwmsearch.pm (unchanged)
Running Mkbootstrap for pwmsearch ()
chmod 644 "pwmsearch.bs"
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644
"/usr/bin/perl" "/usr/share/perl/5.32.0/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.32/ExtUtils/typemap' pwmsearch.xs > pwmsearch.xsc
Please specify prototyping behavior for pwmsearch.xs (see perlxs manual)
mv pwmsearch.xsc pwmsearch.c
arm-linux-gnueabihf-gcc -c -I. -I./lib -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DVERSION=\"0.2\" -DXS_VERSION=\"0.2\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE" pwmsearch.c
In file included from pwmsearch.xs:4:
./lib/pwm_searchPFF.c: In function 'do_search':
./lib/pwm_searchPFF.c:55:7: warning: implicit declaration of function 'announce' [-Wimplicit-function-declaration]
55 | announce("+++\nEntering main.\n+++\n");
| ^~~~~~~~
./lib/pwm_searchPFF.c:74:9: warning: implicit declaration of function 'get_matrix' [-Wimplicit-function-declaration]
74 | if ( get_matrix(&args,pwm) )
| ^~~~~~~~~~
./lib/pwm_searchPFF.c:90:14: warning: implicit declaration of function 'loop_on_seqs' [-Wimplicit-function-declaration]
90 | else if ( loop_on_seqs(&args,pwm,fp,outfp) )
| ^~~~~~~~~~~~
./lib/pwm_searchPFF.c: At top level:
./lib/pwm_searchPFF.c:159:1: warning: return type defaults to 'int' [-Wimplicit-int]
159 | best_pull(pargs,pbase,pstrand,pscore)
| ^~~~~~~~~
./lib/pwm_searchPFF.c: In function 'do_seq':
./lib/pwm_searchPFF.c:229:18: warning: implicit declaration of function 'save_hit'; did you mean 'save_hptr'? [-Wimplicit-function-declaration]
229 | if ( save_hit(base,0,forward_score,hits,&nhit) )
| ^~~~~~~~
| save_hptr
./lib/pwm_searchPFF.c:239:20: warning: implicit declaration of function 'output' [-Wimplicit-function-declaration]
239 | else if ( output(pargs,seqid,base,seq,0,forward_score,outfp) )
| ^~~~~~
./lib/pwm_searchPFF.c: At top level:
./lib/pwm_searchPFF.c:526:1: warning: return type defaults to 'int' [-Wimplicit-int]
526 | get_sequence(fp,seq_id,sequence)
| ^~~~~~~~~~~~
rm -f ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so
arm-linux-gnueabihf-gcc -shared -L/usr/local/lib -fstack-protector-strong pwmsearch.o -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so \
-lm \
chmod 755 ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so
Manifying 1 pod document
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Ext'
Manifying 35 pod documents
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/Ext'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Ext'
Manifying 35 pod documents
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
prove --blib t/01_Matrix.t t/02_Search.t t/03_DB_FlatFileDir.t t/05_DB_JASPAR.t t/06_SimplePFM.t t/07_AnnSpec.t t/07_Elph.t t/07_Gibbs.t t/07_MEME.t t/08_DB_LocalTRANSFAC.t t/09_Word_Consensus.t t/10_Tools_SetOperations.t Ext/t/*.t
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/01_Matrix.t ............... ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/02_Search.t ............... ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/03_DB_FlatFileDir.t ....... ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/05_DB_JASPAR.t ............ ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/06_SimplePFM.t ............ ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/07_AnnSpec.t .............. ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/07_Elph.t ................. ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/07_Gibbs.t ................ ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/07_MEME.t ................. ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/08_DB_LocalTRANSFAC.t ..... ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/09_Word_Consensus.t ....... ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/10_Tools_SetOperations.t .. ok
Ext/t/pwmsearch.t ........... ok
All tests successful.
Files=13, Tests=45, 10 wallclock secs ( 0.12 usr 0.04 sys + 8.36 cusr 1.00 csys = 9.52 CPU)
Result: PASS
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/libtfbs-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/Ext'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Ext'
Manifying 35 pod documents
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/auto/TFBS/Ext/pwmsearch/pwmsearch.so
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/pwm_search.h
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/pwm_searchPFF.c
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGenI.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternI.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Site.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/SitePairSet.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/SiteSet.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Word.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/_Iterator.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/SitePair.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/README.md
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/TFFM.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/MatrixSet.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/ConservationProfile.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR2.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/LocalTRANSFAC.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR7.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR6.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR4.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/TRANSFAC.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR5.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/FlatFileDir.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Ext/pwmsearch.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/PWM.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/_Alignment.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/Alignment.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/ICM.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/PFM.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Elph.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Gibbs.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/MEME.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/SimplePFM.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/YMF.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/AnnSpec.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/AnnSpec/Motif.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Elph/Motif.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Gibbs/Motif.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/MEME/Motif.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Motif/Matrix.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Motif/Word.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/YMF/Motif.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Tools/SetOperations.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Word/Consensus.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/_Iterator/_SiteSetIterator.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/_Iterator/_MatrixSetIterator.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Run/ConservationProfileGenerator.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::FlatFileDir.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR2.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR4.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::LocalTRANSFAC.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::TRANSFAC.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Ext::pwmsearch.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::ICM.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PFM.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PWM.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::MatrixSet.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec::Motif.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph::Motif.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs::Motif.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME::Motif.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::SimplePFM.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF::Motif.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternI.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Site.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePair.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePairSet.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::SiteSet.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word::Consensus.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR5.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR6.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR7.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::Alignment.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::TFFM.3pm
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installexamples
mkdir -p debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext
cp -a Ext/t debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext
for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installman -a
debian/rules override_dh_perl
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_perl
dh_pdl
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian -name pwmsearch.bundle -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.1-3+b2_armhf.deb'.
dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.1-3+b2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../libtfbs-perl_0.7.1-3+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-11-21T13:02:37Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libtfbs-perl_0.7.1-3+b2_armhf.changes:
--------------------------------------
Format: 1.8
Date: Thu, 19 Sep 2019 17:34:02 +0200
Source: libtfbs-perl (0.7.1-3)
Binary: libtfbs-perl libtfbs-perl-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.7.1-3+b2
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
libtfbs-perl - scanning DNA sequence with a position weight matrix
Changes:
libtfbs-perl (0.7.1-3+b2) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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a14cebdcc9abbfd719d4cac8642af4f96728009e 7101 libtfbs-perl_0.7.1-3+b2_armhf.buildinfo
322384e7105fd9b05898b6cfc002da86b0a1561a 232788 libtfbs-perl_0.7.1-3+b2_armhf.deb
Checksums-Sha256:
7f34c0c5a55a6c6c14e95ce13c021d41a1cba9aeaaacb6e74030f779ece86dc0 33300 libtfbs-perl-dbgsym_0.7.1-3+b2_armhf.deb
a0d3e11b32797ee98e1549871e45e3a5797434cfe5d92421757f8e75225edce7 7101 libtfbs-perl_0.7.1-3+b2_armhf.buildinfo
8f186c702538ef260d493e90d5e074d096484c3f1e71e33fa582d8ad25c074c2 232788 libtfbs-perl_0.7.1-3+b2_armhf.deb
Files:
eb2cbebab867d753adbc5533dcb1595c 33300 debug optional libtfbs-perl-dbgsym_0.7.1-3+b2_armhf.deb
acfcc3aae0935e647050217f326b4220 7101 perl optional libtfbs-perl_0.7.1-3+b2_armhf.buildinfo
5fa7c877715fc7d0ef471f359f5ea258 232788 perl optional libtfbs-perl_0.7.1-3+b2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libtfbs-perl-dbgsym_0.7.1-3+b2_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 33300 bytes: control archive=548 bytes.
405 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libtfbs-perl-dbgsym
Source: libtfbs-perl (0.7.1-3)
Version: 0.7.1-3+b2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 46
Depends: libtfbs-perl (= 0.7.1-3+b2)
Section: debug
Priority: optional
Description: debug symbols for libtfbs-perl
Build-Ids: b864c3dd5cf9280edefa17b0f949fcb54e6a647d
drwxr-xr-x root/root 0 2019-09-19 15:34 ./
drwxr-xr-x root/root 0 2019-09-19 15:34 ./usr/
drwxr-xr-x root/root 0 2019-09-19 15:34 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-19 15:34 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-09-19 15:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-09-19 15:34 ./usr/lib/debug/.build-id/b8/
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lrwxrwxrwx root/root 0 2019-09-19 15:34 ./usr/share/doc/libtfbs-perl-dbgsym -> libtfbs-perl
libtfbs-perl_0.7.1-3+b2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 232788 bytes: control archive=4012 bytes.
1429 bytes, 27 lines control
10111 bytes, 114 lines md5sums
Package: libtfbs-perl
Source: libtfbs-perl (0.7.1-3)
Version: 0.7.1-3+b2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 985
Depends: perl (>= 5.32.0-5), perlapi-5.32.0, pdl (>= 1:2.021-2+b1), pdlapi-12, libc6 (>= 2.7), bioperl, libwww-perl, libdbi-perl
Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl
Section: perl
Priority: optional
Homepage: http://tfbs.genereg.net
Description: scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.
.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136".
.
Note: the TFBS perl module is no longer under active development. All the
functionality can be found in the TFBSTools Bioconductor package; users are
highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 4380
Build-Time: 32
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 273
Job: libtfbs-perl_0.7.1-3
Machine Architecture: armhf
Package: libtfbs-perl
Package-Time: 320
Source-Version: 0.7.1-3
Space: 4380
Status: successful
Version: 0.7.1-3+b2
--------------------------------------------------------------------------------
Finished at 2020-11-21T13:02:37Z
Build needed 00:05:20, 4380k disk space