libtfbs-perl →
0.7.1-1 →
armhf → 2017-10-26 06:12:08
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| libtfbs-perl 0.7.1-1 (armhf) Thu, 26 Oct 2017 05:59:45 +0000 |
+==============================================================================+
Package: libtfbs-perl
Version: 0.7.1-1
Source Version: 0.7.1-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-ba29805e-f16e-4f60-8b71-84498ce074a6' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.1 MB]
Fetched 22.4 MB in 25s (888 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libtfbs-perl' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/libtfbs-perl.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/libtfbs-perl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 396 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main libtfbs-perl 0.7.1-1 (dsc) [2181 B]
Get:2 http://172.17.0.1/private buster-staging/main libtfbs-perl 0.7.1-1 (tar) [388 kB]
Get:3 http://172.17.0.1/private buster-staging/main libtfbs-perl 0.7.1-1 (diff) [5912 B]
Fetched 396 kB in 0s (3682 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libtfbs-perl-Qdgg3e/libtfbs-perl-0.7.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libtfbs-perl-Qdgg3e' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-83sPfF/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-83sPfF/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-83sPfF/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-83sPfF/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-83sPfF/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-83sPfF/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-83sPfF/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-83sPfF/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (3230 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libreadline5 libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 71 not upgraded.
Need to get 776 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-83sPfF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 776 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15082 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), perl, pdl (>= 1:2.016), bioperl, libwww-perl, libdbi-perl
Filtered Build-Depends: debhelper (>= 10), perl, pdl (>= 1:2.016), bioperl, libwww-perl, libdbi-perl
dpkg-deb: building package 'sbuild-build-depends-libtfbs-perl-dummy' in '/<<BUILDDIR>>/resolver-83sPfF/apt_archive/sbuild-build-depends-libtfbs-perl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libtfbs-perl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-83sPfF/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-83sPfF/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-83sPfF/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-83sPfF/apt_archive ./ Sources [517 B]
Get:5 copy:/<<BUILDDIR>>/resolver-83sPfF/apt_archive ./ Packages [602 B]
Fetched 2452 B in 0s (3817 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libtfbs-perl build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libreadline5 libsasl2-modules
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bioperl bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file fontconfig-config
fonts-dejavu-core gcc-6-base gettext gettext-base groff-base intltool-debian
libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libbsd0
libcapture-tiny-perl libclass-data-inheritable-perl libcroco3
libdata-stag-perl libdbi-perl libdevel-stacktrace-perl libencode-locale-perl
libexception-class-perl libexpat1 libfile-listing-perl
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd3
libgfortran3 libglib2.0-0 libgsl23 libgslcblas0 libhdf4-0-alt
libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
libhttp-negotiate-perl libicu57 libio-html-perl libio-socket-ssl-perl
libio-string-perl libjbig0 libjpeg62-turbo liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic-mgc libmagic1 libnet-http-perl
libnet-ssleay-perl libpipeline1 libproj12 libsigsegv2 libsub-uplevel-perl
libterm-readkey-perl libtest-deep-perl libtest-differences-perl
libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl
libtiff5 libtimedate-perl libtool libtry-tiny-perl liburi-perl libwebp6
libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxml2 libxpm4 m4 man-db netbase pdl perl-openssl-defaults
po-debconf proj-data ucf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libxml-sax-expatxs-perl libclone-perl libmldbm-perl libnet-daemon-perl
libsql-statement-perl libgd-tools gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info
| gsl-ref-html libhdf4-doc libhdf4-alt-dev hdf4-tools libdata-dump-perl
libcrypt-ssleay-perl proj-bin libtool-doc gfortran | fortran95-compiler
gcj-jdk libauthen-ntlm-perl m4-doc less www-browser doc-base
libastro-fits-header-perl libdevel-repl-perl libextutils-f77-perl
libfile-map-perl libgl1-mesa-glx | libgl1 libinline-perl libinline-c-perl
libmodule-compile-perl libopengl-perl libpdl-fftw-perl
libpdl-graphics-plplot-perl libpgplot-perl netpbm | imagemagick
libmail-box-perl
Recommended packages:
bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libgd-gd2-perl
libapache-dbi-perl libxml-simple-perl libyaml-perl libace-perl
liblist-moreutils-perl libxml-twig-perl libset-scalar-perl curl | wget
| lynx-cur libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl
libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl
libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl
libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl
libsort-naturally-perl libspreadsheet-parseexcel-perl
libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl
libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl
libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk
libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl
libxml-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libhtml-format-perl libltdl-dev libdata-dump-perl
libhtml-form-perl libhttp-daemon-perl libmailtools-perl
libterm-readline-gnu-perl | libterm-readline-perl-perl libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bioperl bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file fontconfig-config
fonts-dejavu-core gcc-6-base gettext gettext-base groff-base intltool-debian
libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libbsd0
libcapture-tiny-perl libclass-data-inheritable-perl libcroco3
libdata-stag-perl libdbi-perl libdevel-stacktrace-perl libencode-locale-perl
libexception-class-perl libexpat1 libfile-listing-perl
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd3
libgfortran3 libglib2.0-0 libgsl23 libgslcblas0 libhdf4-0-alt
libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
libhttp-negotiate-perl libicu57 libio-html-perl libio-socket-ssl-perl
libio-string-perl libjbig0 libjpeg62-turbo liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic-mgc libmagic1 libnet-http-perl
libnet-ssleay-perl libpipeline1 libproj12 libsigsegv2 libsub-uplevel-perl
libterm-readkey-perl libtest-deep-perl libtest-differences-perl
libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl
libtiff5 libtimedate-perl libtool libtry-tiny-perl liburi-perl libwebp6
libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxml2 libxpm4 m4 man-db netbase pdl perl-openssl-defaults
po-debconf proj-data sbuild-build-depends-libtfbs-perl-dummy ucf
0 upgraded, 94 newly installed, 0 to remove and 71 not upgraded.
Need to get 39.7 MB of archives.
After this operation, 133 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-83sPfF/apt_archive ./ sbuild-build-depends-libtfbs-perl-dummy 0.invalid.0 [808 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-2 [95.8 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libterm-readkey-perl armhf 2.37-1+b1 [26.6 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-1 [67.1 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.8-0.2 [393 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.12.3-0.2 [304 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.12.3-0.2 [349 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2 [110 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.8-5 [218 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libwebp6 armhf 0.6.0-3 [217 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.4-3 [290 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.4-3 [683 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libgd3 armhf 2.2.5-3 [115 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf gcc-6-base armhf 6.4.0-6 [181 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libgfortran3 armhf 6.4.0-6 [166 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libgslcblas0 armhf 2.4+dfsg-6 [75.1 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libgsl23 armhf 2.4+dfsg-6 [681 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libhdf4-0-alt armhf 4.2.13-1 [236 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf proj-data all 4.9.3-2 [4044 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libproj12 armhf 4.9.3-2 [156 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf pdl armhf 1:2.018-1+rpi1+b1 [3475 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf netbase all 5.4 [19.1 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-5 [609 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libio-string-perl all 1.08-3 [12.3 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libdata-stag-perl all 0.14-2 [448 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libbio-perl-perl all 1.7.1-3 [4591 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libclass-data-inheritable-perl all 0.08-2 [9296 B]
Get:50 http://172.17.0.1/private buster-staging/main armhf libdevel-stacktrace-perl all 2.0200-1 [27.3 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libexception-class-perl all 1.43-1 [32.0 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libtest-deep-perl all 1.127-1 [48.5 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libcapture-tiny-perl all 0.46-1 [25.7 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libalgorithm-diff-perl all 1.19.03-1 [48.7 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libtext-diff-perl all 1.44-1 [27.4 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libtest-differences-perl all 0.64-1 [18.0 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libsub-uplevel-perl all 0.2800-1 [16.3 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libtest-exception-perl all 0.43-1 [18.7 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libtest-warn-perl all 0.32-1 [15.1 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libtest-most-perl all 0.35-1 [24.5 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf bioperl all 1.7.1-3 [421 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.039-1 [18.2 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.039-1 [11.6 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.1-1 [2653 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.9.2 [979 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libdbi-perl armhf 1.637-1 [760 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libencode-locale-perl all 1.05-1 [13.7 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libhttp-date-perl all 6.02-1 [10.7 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libfile-listing-perl all 6.04-1 [10.3 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libhtml-tagset-perl all 3.20-3 [12.7 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf liburi-perl all 1.72-2 [88.8 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libhtml-parser-perl armhf 3.72-3+b1 [101 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libhtml-tree-perl all 5.03-2 [210 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libio-html-perl all 1.001-1 [17.6 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf liblwp-mediatypes-perl all 6.02-1 [22.1 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libhttp-message-perl all 6.13-1 [71.6 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libhttp-cookies-perl all 6.01-1 [17.4 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libhttp-negotiate-perl all 6.00-2 [13.6 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf perl-openssl-defaults armhf 3 [6782 B]
Get:88 http://172.17.0.1/private buster-staging/main armhf libnet-ssleay-perl armhf 1.80-1+b1 [270 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libio-socket-ssl-perl all 2.051-1 [201 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libnet-http-perl all 6.16-1 [24.2 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libtry-tiny-perl all 0.28-1 [22.7 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libwww-robotrules-perl all 6.01-1 [14.3 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libwww-perl all 6.27-1 [186 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf liblwp-protocol-https-perl all 6.07-2 [9242 B]
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Setting up po-debconf (1.0.20) ...
Setting up libhttp-cookies-perl (6.01-1) ...
Setting up libx11-6:armhf (2:1.6.4-3) ...
Setting up libxpm4:armhf (1:3.5.12-1) ...
Setting up libtest-most-perl (0.35-1) ...
Setting up libgd3:armhf (2.2.5-3) ...
Setting up pdl (1:2.018-1+rpi1+b1) ...
Setting up bioperl (1.7.1-3) ...
Setting up dh-autoreconf (14) ...
Setting up dh-strip-nondeterminism (0.039-1) ...
Setting up libwww-perl (6.27-1) ...
Setting up debhelper (10.9.2) ...
Setting up liblwp-protocol-https-perl (6.07-2) ...
Setting up sbuild-build-depends-libtfbs-perl-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-14) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.29.1-3+rpi1 dpkg-dev_1.18.24 g++-7_7.2.0-5 gcc-7_7.2.0-5 libc6-dev_2.24-14 libstdc++-7-dev_7.2.0-5 libstdc++6_7.2.0-5 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch
Package versions: adduser_3.116 apt_1.5 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-3+rpi1 binutils-arm-linux-gnueabihf_2.29.1-3+rpi1 binutils-common_2.29.1-3+rpi1 bioperl_1.7.1-3 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-5 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-5 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.9.2 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.039-1 diffutils_1:3.6-1 dirmngr_2.2.1-1 dmsetup_2:1.02.142-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.6-1 e2fsprogs_1.43.6-1 fakeroot_1.22-1 fdisk_2.29.2-5 file_1:5.32-1 findutils_4.6.0+git+20170729-2 fontconfig-config_2.12.3-0.2 fonts-dejavu-core_2.37-1 g++_4:7.2.0-1d1 g++-7_7.2.0-5 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-6-base_6.4.0-6 gcc-7_7.2.0-5 gcc-7-base_7.2.0-5 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.2.1-1 gnupg-agent_2.2.1-1 gnupg-l10n_2.2.1-1 gnupg-utils_2.2.1-1 gpg_2.2.1-1 gpg-agent_2.2.1-1 gpg-wks-client_2.2.1-1 gpg-wks-server_2.2.1-1 gpgconf_2.2.1-1 gpgsm_2.2.1-1 gpgv_2.2.1-1 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libalgorithm-diff-perl_1.19.03-1 libapparmor1_2.11.0-11 libapt-pkg5.0_1.5 libarchive-zip-perl_1.59-1 libasan4_7.2.0-5 libassuan0_2.4.3-3 libatomic1_7.2.0-5 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libbinutils_2.29.1-3+rpi1 libbio-perl-perl_1.7.1-3 libblkid1_2.29.2-5 libbsd0_0.8.6-2 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dev_2.24-14 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcapture-tiny-perl_0.46-1 libcc1-0_7.2.0-5 libcilkrts5_7.2.0-5 libclass-data-inheritable-perl_0.08-2 libcomerr2_1.43.6-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.5-1 libdata-stag-perl_0.14-2 libdb5.3_5.3.28-13.1 libdbi-perl_1.637-1 libdbus-1-3_1.11.16+really1.10.22-1 libdebconfclient0_0.230 libdevel-stacktrace-perl_2.0200-1 libdevmapper1.02.1_2:1.02.142-1 libdpkg-perl_1.18.24 libdrm-common_2.4.82-1+rpi1 libdrm2_2.4.82-1+rpi1 libencode-locale-perl_1.05-1 libexception-class-perl_1.43-1 libexpat1_2.2.3-1 libfakeroot_1.22-1 libfdisk1_2.29.2-5 libffi6_3.2.1-6 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_0.039-1 libfontconfig1_2.12.3-0.2 libfreetype6_2.8-0.2 libgcc-7-dev_7.2.0-5 libgcc1_1:7.2.0-5 libgcrypt20_1.7.9-1 libgd3_2.2.5-3 libgdbm3_1.8.3-14 libgfortran3_6.4.0-6 libglib2.0-0_2.54.1-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.15-2 libgomp1_7.2.0-5 libgpg-error0_1.27-3 libgsl23_2.4+dfsg-6 libgslcblas0_2.4+dfsg-6 libhdf4-0-alt_4.2.13-1 libhogweed4_3.3-2 libhtml-parser-perl_3.72-3+b1 libhtml-tagset-perl_3.20-3 libhtml-tree-perl_5.03-2 libhttp-cookies-perl_6.01-1 libhttp-date-perl_6.02-1 libhttp-message-perl_6.13-1 libhttp-negotiate-perl_6.00-2 libicu57_57.1-8 libidn11_1.33-2 libidn2-0_2.0.2-5 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.051-1 libio-string-perl_1.08-3 libip4tc0_1.6.1-2 libisl15_0.18-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.07-2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.29.2-5 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libncurses5_6.0+20170902-1 libncursesw5_6.0+20170902-1 libnet-http-perl_6.16-1 libnet-ssleay-perl_1.80-1+b1 libnettle6_3.3-2 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.24_5.24.1-7 libperl5.26_5.26.0-8 libpipeline1_1.4.2-1 libplymouth4_0.9.3-1 libpng16-16_1.6.32-3 libprocps6_2:3.3.12-3 libproj12_4.9.3-2 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libsmartcols1_2.29.2-5 libsqlite3-0_3.20.1-1 libss2_1.43.6-1 libssl1.1_1.1.0f-5 libstdc++-7-dev_7.2.0-5 libstdc++6_7.2.0-5 libsub-uplevel-perl_0.2800-1 libsystemd0_234-3 libtasn1-6_4.12-2.1 libterm-readkey-perl_2.37-1+b1 libtest-deep-perl_1.127-1 libtest-differences-perl_0.64-1 libtest-exception-perl_0.43-1 libtest-most-perl_0.35-1 libtest-warn-perl_0.32-1 libtext-diff-perl_1.44-1 libtiff5_4.0.8-5 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170902-1 libtool_2.4.6-2 libtry-tiny-perl_0.28-1 libubsan0_7.2.0-5 libudev1_234-3 libunistring2_0.9.7-2 liburi-perl_1.72-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-5 libwebp6_0.6.0-3 libwww-perl_6.27-1 libwww-robotrules-perl_6.01-1 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1+b2 libxcb1_1.12-1 libxdmcp6_1:1.1.2-3 libxml2_2.9.4+dfsg1-5 libxpm4_1:3.5.12-1 linux-base_4.5 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch login_1:4.4-4.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.29.2-5 mountall_2.54 multiarch-support_2.24-14 ncurses-base_6.0+20170902-1 ncurses-bin_6.0+20170902-1 netbase_5.4 openssl_1.1.0f-5 passwd_1:4.4-4.1 patch_2.7.5-1 pdl_1:2.018-1+rpi1+b1 perl_5.26.0-8 perl-base_5.26.0-8 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-8 perl-openssl-defaults_3 pinentry-curses_1.0.0-2 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 proj-data_4.9.3-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libtfbs-perl-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-3 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2017b-2 ucf_3.0036 udev_234-3 util-linux_2.29.2-5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Oct 21 02:45:47 2017 UTC
gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libtfbs-perl_0.7.1-1.dsc
dpkg-source: info: extracting libtfbs-perl in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libtfbs-perl_0.7.1.orig.tar.gz
dpkg-source: info: unpacking libtfbs-perl_0.7.1-1.debian.tar.xz
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying spelling-errors.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-ba29805e-f16e-4f60-8b71-84498ce074a6
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libtfbs-perl
dpkg-buildpackage: info: source version 0.7.1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build libtfbs-perl-0.7.1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm --force Makefile Makefile.old
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "n" | perl Makefile.PL INSTALLDIRS=vendor
-------------------------------------------------
WARNING
-------------------------------------------------
GD.pm does not seem to be installed.
GD is reqired to produce "sequence logos" from
information content matrices. If you need this
functionality, please visit
http://stein.cshl.org/WWW/software/GD/
for information on obtaining and installing GD.
-------------------------------------------------
Do you have write access to a MySQL database server? [n] Checking if your kit is complete...
Warning: the following files are missing in your kit:
README
Please inform the author.
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for TFBS
Writing MYMETA.yml and MYMETA.json
/usr/bin/make OPTIMIZE="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" LD_RUN_PATH="" OTHERLDFLAGS="-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm
Skip blib/lib/TFBS/Matrix/PWM.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Gibbs/Motif.pm (unchanged)
cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm
cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm
cp TFBS/README.md blib/lib/TFBS/README.md
cp TFBS/DB/JASPAR7.pm blib/lib/TFBS/DB/JASPAR7.pm
cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm
cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm
cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm
Skip blib/lib/TFBS/DB/LocalTRANSFAC.pm (unchanged)
cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm
Skip blib/lib/TFBS/PatternGen/Elph.pm (unchanged)
cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm
cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm
Skip blib/lib/TFBS/DB.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/SimplePFM.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm (unchanged)
cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm
Skip blib/lib/TFBS/Site.pm (unchanged)
cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm
Skip blib/lib/TFBS/PatternI.pm (unchanged)
Skip blib/lib/TFBS/DB/JASPAR2.pm (unchanged)
cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm
Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged)
cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm
Skip blib/lib/TFBS/PatternGenI.pm (unchanged)
Skip blib/lib/TFBS/SitePairSet.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Gibbs.pm (unchanged)
cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm
Skip blib/lib/TFBS/PatternGen/MEME.pm (unchanged)
cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm
Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged)
cp TFBS/Matrix/ICM.pm blib/lib/TFBS/Matrix/ICM.pm
Skip blib/lib/TFBS/SiteSet.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged)
cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm
Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged)
cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm
Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged)
cp TFBS/_Iterator/_MatrixSetIterator.pm blib/lib/TFBS/_Iterator/_MatrixSetIterator.pm
Skip blib/lib/TFBS/_Iterator.pm (unchanged)
cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm
Skip blib/lib/TFBS/Word/Consensus.pm (unchanged)
Skip blib/lib/TFBS/Word.pm (unchanged)
make[3]: Entering directory '/<<PKGBUILDDIR>>/Ext'
cp lib/pwm_searchPFF.c ../blib/lib/pwm_searchPFF.c
Skip ../blib/lib/pwm_search.h (unchanged)
Skip ../blib/lib/TFBS/Ext/pwmsearch.pm (unchanged)
Running Mkbootstrap for pwmsearch ()
chmod 644 "pwmsearch.bs"
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644
"/usr/bin/perl" "/usr/share/perl/5.26.0/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.26/ExtUtils/typemap' pwmsearch.xs > pwmsearch.xsc
Please specify prototyping behavior for pwmsearch.xs (see perlxs manual)
mv pwmsearch.xsc pwmsearch.c
arm-linux-gnueabihf-gcc -c -I. -I./lib -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.2\" -DXS_VERSION=\"0.2\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.26/CORE" pwmsearch.c
In file included from pwmsearch.xs:4:0:
./lib/pwm_searchPFF.c: In function 'do_search':
./lib/pwm_searchPFF.c:55:7: warning: implicit declaration of function 'announce' [-Wimplicit-function-declaration]
announce("+++\nEntering main.\n+++\n");
^~~~~~~~
./lib/pwm_searchPFF.c:74:9: warning: implicit declaration of function 'get_matrix'; did you mean 'getchar'? [-Wimplicit-function-declaration]
if ( get_matrix(&args,pwm) )
^~~~~~~~~~
getchar
./lib/pwm_searchPFF.c:90:14: warning: implicit declaration of function 'loop_on_seqs' [-Wimplicit-function-declaration]
else if ( loop_on_seqs(&args,pwm,fp,outfp) )
^~~~~~~~~~~~
./lib/pwm_searchPFF.c: At top level:
./lib/pwm_searchPFF.c:159:1: warning: return type defaults to 'int' [-Wimplicit-int]
best_pull(pargs,pbase,pstrand,pscore)
^~~~~~~~~
./lib/pwm_searchPFF.c: In function 'do_seq':
./lib/pwm_searchPFF.c:229:18: warning: implicit declaration of function 'save_hit'; did you mean 'save_hptr'? [-Wimplicit-function-declaration]
if ( save_hit(base,0,forward_score,hits,&nhit) )
^~~~~~~~
save_hptr
./lib/pwm_searchPFF.c:239:20: warning: implicit declaration of function 'output'; did you mean 'getpt'? [-Wimplicit-function-declaration]
else if ( output(pargs,seqid,base,seq,0,forward_score,outfp) )
^~~~~~
getpt
./lib/pwm_searchPFF.c: At top level:
./lib/pwm_searchPFF.c:526:1: warning: return type defaults to 'int' [-Wimplicit-int]
get_sequence(fp,seq_id,sequence)
^~~~~~~~~~~~
rm -f ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so
arm-linux-gnueabihf-gcc -shared -L/usr/local/lib -fstack-protector-strong pwmsearch.o -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so \
-lm \
chmod 755 ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so
Manifying 1 pod document
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Ext'
Manifying 35 pod documents
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/Ext'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Ext'
Manifying 35 pod documents
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
prove --blib t/01_Matrix.t t/02_Search.t t/03_DB_FlatFileDir.t t/05_DB_JASPAR.t t/06_SimplePFM.t t/07_AnnSpec.t t/07_Elph.t t/07_Gibbs.t t/07_MEME.t t/08_DB_LocalTRANSFAC.t t/09_Word_Consensus.t t/10_Tools_SetOperations.t Ext/t/*.t
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/01_Matrix.t ............... ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/02_Search.t ............... ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/03_DB_FlatFileDir.t ....... ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/05_DB_JASPAR.t ............ ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/06_SimplePFM.t ............ ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/07_AnnSpec.t .............. ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/07_Elph.t ................. ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/07_Gibbs.t ................ ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/07_MEME.t ................. ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/08_DB_LocalTRANSFAC.t ..... ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/09_Word_Consensus.t ....... ok
Possible precedence issue with control flow operator at /<<PKGBUILDDIR>>/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/10_Tools_SetOperations.t .. ok
Ext/t/pwmsearch.t ........... ok
All tests successful.
Files=13, Tests=45, 31 wallclock secs ( 0.39 usr 0.04 sys + 28.82 cusr 2.15 csys = 31.40 CPU)
Result: PASS
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/libtfbs-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/Ext'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Ext'
Manifying 35 pod documents
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/auto/TFBS/Ext/pwmsearch/pwmsearch.so
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/pwm_search.h
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/pwm_searchPFF.c
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGenI.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternI.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/Site.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/SitePairSet.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/SiteSet.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/Word.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/_Iterator.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/ConservationProfile.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/README.md
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/SitePair.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/MatrixSet.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/Matrix.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/TFFM.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/JASPAR2.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/LocalTRANSFAC.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/JASPAR.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/JASPAR7.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/JASPAR6.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/TRANSFAC.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/JASPAR5.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/JASPAR4.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/FlatFileDir.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/Ext/pwmsearch.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/Matrix/PWM.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/Matrix/_Alignment.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/Matrix/Alignment.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/Matrix/PFM.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/Matrix/ICM.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/Elph.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/Gibbs.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/MEME.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/SimplePFM.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/YMF.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/AnnSpec.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/AnnSpec/Motif.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/Elph/Motif.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/Gibbs/Motif.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/MEME/Motif.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/Motif/Matrix.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/Motif/Word.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/PatternGen/YMF/Motif.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/Tools/SetOperations.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/Word/Consensus.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/_Iterator/_MatrixSetIterator.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/_Iterator/_SiteSetIterator.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/Run/ConservationProfileGenerator.pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::FlatFileDir.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR2.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR4.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::LocalTRANSFAC.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::TRANSFAC.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Ext::pwmsearch.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::ICM.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PFM.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PWM.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::MatrixSet.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec::Motif.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph::Motif.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs::Motif.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME::Motif.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::SimplePFM.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF::Motif.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternI.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Site.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePair.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePairSet.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::SiteSet.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word::Consensus.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR5.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR6.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR7.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::Alignment.3pm
Installing /<<PKGBUILDDIR>>/debian/libtfbs-perl/usr/share/man/man3/TFBS::TFFM.3pm
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installexamples
mkdir -p debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext
cp -a Ext/t debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installman -a
debian/rules override_dh_perl
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_perl
dh_pdl
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.26/auto/TFBS/Ext/pwmsearch/pwmsearch.so was not linked against libm.so.6 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.1-1_armhf.deb'.
dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.1-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libtfbs-perl_0.7.1-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build libtfbs-perl-0.7.1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-10-26T06:11:03Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libtfbs-perl_0.7.1-1_armhf.changes:
-----------------------------------
Format: 1.8
Date: Sat, 21 Oct 2017 11:41:55 +0900
Source: libtfbs-perl
Binary: libtfbs-perl
Architecture: armhf
Version: 0.7.1-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description:
libtfbs-perl - scanning DNA sequence with a position weight matrix
Changes:
libtfbs-perl (0.7.1-1) unstable; urgency=medium
.
* New upstream version 0.7.1
* d/copyright, d/watch: Stop repacking upstream sources.
* d/control:
- Add upstream's notice of deprecation to the package's description.
- Remove cruft Makefiles at build time.
- Conforms to Policy version 4.1.1.
Checksums-Sha1:
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020686ca00937e1a4b8f01683ad143c420a90b82 6429 libtfbs-perl_0.7.1-1_armhf.buildinfo
0d6b8b1b7b486edb0b819f9f803a7a974e302533 241248 libtfbs-perl_0.7.1-1_armhf.deb
Checksums-Sha256:
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364767fd43528b5b00166cde4169e6f187e414e8ce621f14ae811c147ab7fb9d 6429 libtfbs-perl_0.7.1-1_armhf.buildinfo
59ca59eb20cf8100bf10e00e76428f132bb0e32b5e8fd8a90f48632c62eca99f 241248 libtfbs-perl_0.7.1-1_armhf.deb
Files:
62cb1f04730a5cdcf3a29ab8347a75c2 34146 debug optional libtfbs-perl-dbgsym_0.7.1-1_armhf.deb
9946616d9f35d67a077e43850a4b6c05 6429 perl optional libtfbs-perl_0.7.1-1_armhf.buildinfo
0c2db3023e4285ce3a3e6a0e55c09590 241248 perl optional libtfbs-perl_0.7.1-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libtfbs-perl-dbgsym_0.7.1-1_armhf.deb
-------------------------------------
new debian package, version 2.0.
size 34146 bytes: control archive=457 bytes.
389 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libtfbs-perl-dbgsym
Source: libtfbs-perl
Version: 0.7.1-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 47
Depends: libtfbs-perl (= 0.7.1-1)
Section: debug
Priority: optional
Description: debug symbols for libtfbs-perl
Build-Ids: b4d9ab94922a80a02a321d48897c36034a4942f2
drwxr-xr-x root/root 0 2017-10-21 02:41 ./
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/lib/
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/lib/debug/.build-id/b4/
-rw-r--r-- root/root 37052 2017-10-21 02:41 ./usr/lib/debug/.build-id/b4/d9ab94922a80a02a321d48897c36034a4942f2.debug
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/share/
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-10-21 02:41 ./usr/share/doc/libtfbs-perl-dbgsym -> libtfbs-perl
libtfbs-perl_0.7.1-1_armhf.deb
------------------------------
new debian package, version 2.0.
size 241248 bytes: control archive=4268 bytes.
1400 bytes, 26 lines control
10042 bytes, 113 lines md5sums
Package: libtfbs-perl
Version: 0.7.1-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 827
Depends: perl (>= 5.26.0-8), perlapi-5.26.0, pdl (>= 1:2.018-1+rpi1+b1), pdlapi-12, libc6 (>= 2.4), bioperl, libwww-perl, libdbi-perl
Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl
Section: perl
Priority: optional
Homepage: http://tfbs.genereg.net
Description: scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.
.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136".
.
Note: the TFBS perl module is no longer under active development. All the
functionality can be found in the TFBSTools Bioconductor package; users are
highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
drwxr-xr-x root/root 0 2017-10-21 02:41 ./
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/lib/
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/lib/arm-linux-gnueabihf/perl5/5.26/
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/
-rw-r--r-- root/root 4598 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/ConservationProfile.pm
-rw-r--r-- root/root 326 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB.pm
drwxr-xr-x root/root 0 2017-10-21 02:41 ./usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/
-rw-r--r-- root/root 13827 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/FlatFileDir.pm
-rw-r--r-- root/root 58674 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/JASPAR.pm
-rw-r--r-- root/root 25420 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.26/TFBS/DB/JASPAR2.pm
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 4236
Build-Time: 88
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 535
Job: libtfbs-perl_0.7.1-1
Machine Architecture: armhf
Package: libtfbs-perl
Package-Time: 678
Source-Version: 0.7.1-1
Space: 4236
Status: successful
Version: 0.7.1-1
--------------------------------------------------------------------------------
Finished at 2017-10-26T06:11:03Z
Build needed 00:11:18, 4236k disc space