libtfbs-perl →
0.7.1+ds-2+b3 →
armhf → 2022-11-02 11:19:18
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| libtfbs-perl 0.7.1+ds-2+b3 (armhf) Wed, 02 Nov 2022 11:12:50 +0000 |
+==============================================================================+
Package: libtfbs-perl
Version: 0.7.1+ds-2+b3
Source Version: 0.7.1+ds-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-133e1236-0a92-4794-8034-e39f93c40593' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.2 MB]
Fetched 27.6 MB in 10s (2715 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libtfbs-perl' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libtfbs-perl.git
Please use:
git clone https://salsa.debian.org/med-team/libtfbs-perl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 207 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main libtfbs-perl 0.7.1+ds-2 (dsc) [2203 B]
Get:2 http://172.17.4.1/private bookworm-staging/main libtfbs-perl 0.7.1+ds-2 (tar) [196 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main libtfbs-perl 0.7.1+ds-2 (diff) [8504 B]
Fetched 207 kB in 0s (4251 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libtfbs-perl-ufgBPd/libtfbs-perl-0.7.1+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libtfbs-perl-ufgBPd' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-NUqjJE/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-NUqjJE/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-NUqjJE/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-NUqjJE/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-NUqjJE/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-NUqjJE/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-NUqjJE/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-NUqjJE/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (8828 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.34 netbase perl-modules-5.34 sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 32 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-NUqjJE/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (60.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14774 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), perl, pdl (>= 1:2.016), bioperl, libwww-perl, libdbi-perl
Filtered Build-Depends: debhelper-compat (= 12), perl, pdl (>= 1:2.016), bioperl, libwww-perl, libdbi-perl
dpkg-deb: building package 'sbuild-build-depends-libtfbs-perl-dummy' in '/<<BUILDDIR>>/resolver-NUqjJE/apt_archive/sbuild-build-depends-libtfbs-perl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libtfbs-perl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-NUqjJE/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-NUqjJE/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-NUqjJE/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-NUqjJE/apt_archive ./ Sources [527 B]
Get:5 copy:/<<BUILDDIR>>/resolver-NUqjJE/apt_archive ./ Packages [607 B]
Fetched 2467 B in 0s (10.3 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libtfbs-perl build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.34 perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bioperl bsdextrautils
ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file
fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
intltool-debian libabsl20210324 libalgorithm-diff-perl libaom3
libarchive-zip-perl libavif15 libbio-perl-perl libbrotli1 libbsd0
libcapture-tiny-perl libclass-data-inheritable-perl libcurl3-gnutls
libdata-stag-perl libdav1d6 libdbi-perl libde265-0 libdebhelper-perl
libdeflate0 libdevel-stacktrace-perl libelf1 libencode-locale-perl
libexception-class-perl libexpat1 libfile-listing-perl
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libgav1-1 libgd3 libgfortran5 libgsl27 libgslcblas0
libhdf4-0-alt libheif1 libhtml-parser-perl libhtml-tagset-perl
libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu71 libio-html-perl
libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo liblerc4
liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1
libmd0 libncurses6 libnet-http-perl libnet-ssleay-perl libnghttp2-14
libpipeline1 libpng16-16 libpod-parser-perl libproj25 libpsl5 librav1e0
libregexp-ipv6-perl librtmp1 libssh2-1 libsub-override-perl
libsub-uplevel-perl libsvtav1enc1 libterm-readkey-perl libtest-deep-perl
libtest-differences-perl libtest-exception-perl libtest-most-perl
libtest-warn-perl libtext-balanced-perl libtext-diff-perl libtiff5
libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwebp7
libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-199 libxau6
libxcb1 libxdmcp6 libxml2 libxpm4 libyuv0 m4 man-db openssl pdl
perl-openssl-defaults po-debconf proj-data ucf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libxml-sax-expatxs-perl libclone-perl
libmldbm-perl libnet-daemon-perl libsql-statement-perl libgd-tools
gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libhdf4-doc
libhdf4-alt-dev hdf4-tools libdata-dump-perl libcrypt-ssleay-perl proj-bin
libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl
libbusiness-isbn-perl libauthen-ntlm-perl m4-doc apparmor less www-browser
doc-base libastro-fits-header-perl libdevel-repl-perl libextutils-f77-perl
libfile-map-perl libgl1-mesa-glx | libgl1 libinline-perl libinline-c-perl
libmodule-compile-perl libopengl-perl libpgplot-perl netpbm | imagemagick
libmail-box-perl
Recommended packages:
bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libgd-gd2-perl
libapache-dbi-perl libxml-simple-perl libyaml-perl libace-perl
liblist-moreutils-perl libxml-twig-perl libset-scalar-perl curl | wget
| lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl
libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl
libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl
libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl
libsort-naturally-perl libspreadsheet-parseexcel-perl
libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl
libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl
libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk
libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl
libxml-perl libarchive-cpio-perl libhtml-format-perl libgpm2 publicsuffix
libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl
libmailtools-perl libterm-readline-gnu-perl | libterm-readline-perl-perl
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bioperl bsdextrautils
ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file
fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
intltool-debian libabsl20210324 libalgorithm-diff-perl libaom3
libarchive-zip-perl libavif15 libbio-perl-perl libbrotli1 libbsd0
libcapture-tiny-perl libclass-data-inheritable-perl libcurl3-gnutls
libdata-stag-perl libdav1d6 libdbi-perl libde265-0 libdebhelper-perl
libdeflate0 libdevel-stacktrace-perl libelf1 libencode-locale-perl
libexception-class-perl libexpat1 libfile-listing-perl
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libgav1-1 libgd3 libgfortran5 libgsl27 libgslcblas0
libhdf4-0-alt libheif1 libhtml-parser-perl libhtml-tagset-perl
libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu71 libio-html-perl
libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo liblerc4
liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1
libmd0 libncurses6 libnet-http-perl libnet-ssleay-perl libnghttp2-14
libpipeline1 libpng16-16 libpod-parser-perl libproj25 libpsl5 librav1e0
libregexp-ipv6-perl librtmp1 libssh2-1 libsub-override-perl
libsub-uplevel-perl libsvtav1enc1 libterm-readkey-perl libtest-deep-perl
libtest-differences-perl libtest-exception-perl libtest-most-perl
libtest-warn-perl libtext-balanced-perl libtext-diff-perl libtiff5
libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwebp7
libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-199 libxau6
libxcb1 libxdmcp6 libxml2 libxpm4 libyuv0 m4 man-db openssl pdl
perl-openssl-defaults po-debconf proj-data
sbuild-build-depends-libtfbs-perl-dummy ucf
0 upgraded, 122 newly installed, 0 to remove and 32 not upgraded.
Need to get 48.2 MB of archives.
After this operation, 173 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-NUqjJE/apt_archive ./ sbuild-build-depends-libtfbs-perl-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1.1 [78.2 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-3 [34.3 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.0-1 [1299 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.5-4 [1346 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libio-string-perl all 1.08-3.1 [11.8 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libdata-stag-perl all 0.14-3 [448 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libbio-perl-perl all 1.7.8-1 [2603 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libexception-class-perl all 1.45-1 [34.6 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libtest-deep-perl all 1.130-2 [49.4 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libtext-diff-perl all 1.45-1 [27.7 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libtest-differences-perl all 0.69-1 [18.9 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libtest-exception-perl all 0.43-2 [19.1 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libtest-warn-perl all 0.37-1 [16.5 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libtest-most-perl all 0.38-1 [25.1 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf bioperl all 1.7.8-1 [246 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.10.1 [79.9 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.10.1 [940 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libabsl20210324 armhf 0~20210324.2-4+rpi1 [331 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libaom3 armhf 3.5.0-1 [1302 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libdav1d6 armhf 1.0.0-2+rpi1 [205 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libgav1-1 armhf 0.18.0-1+rpi1 [272 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf librav1e0 armhf 0.5.1-5 [525 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libsvtav1enc1 armhf 1.2.1+dfsg-1 [878 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libyuv0 armhf 0.0~git20221018.8084f0b-1 [79.9 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libavif15 armhf 0.11.1-1 [84.1 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.85.0-1 [320 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libdbi-perl armhf 1.643-3+b3 [763 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libde265-0 armhf 1.0.9-1+rpi1 [186 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libfile-listing-perl all 6.15-1 [12.6 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.38-2 [273 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libx265-199 armhf 3.5-2 [548 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libheif1 armhf 1.13.0-1 [169 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-5 [277 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libgd3 armhf 2.3.3-7 [102 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-3+rpi1 [238 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.7.1+dfsg-3 [81.4 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libgsl27 armhf 2.7.1+dfsg-3 [758 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libhdf4-0-alt armhf 4.2.15-4 [240 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libhtml-tagset-perl all 3.20-6 [11.7 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.16-1 [90.3 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libhtml-parser-perl armhf 3.79-1+b1 [97.4 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libhtml-tree-perl all 5.07-2 [213 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.41-1 [81.1 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf perl-openssl-defaults armhf 7+b1 [7916 B]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libnet-ssleay-perl armhf 1.92-2+b2 [297 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libio-socket-ssl-perl all 2.075-1 [220 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libnet-http-perl all 6.22-1 [25.3 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libwww-perl all 6.67-1 [194 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libpod-parser-perl all 1.65-1 [96.3 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf proj-data all 9.1.0-1 [6222 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libproj25 armhf 9.1.0-1 [1055 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libterm-readkey-perl armhf 2.38-2+b1 [23.4 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libtext-balanced-perl all 2.06-1 [42.3 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf pdl armhf 1:2.081-1 [3893 kB]
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Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl'
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Setting up libpng16-16:armhf (1.6.38-2) ...
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Setting up libxml2:armhf (2.9.14+dfsg-1) ...
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Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libxdmcp6:armhf (1:1.1.2-3) ...
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Setting up gettext (0.21-9) ...
Setting up libfile-listing-perl (6.15-1) ...
Setting up libtool (2.4.7-4) ...
Setting up fontconfig-config (2.13.1-4.5) ...
Setting up libtest-warn-perl (0.37-1) ...
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Setting up libcurl3-gnutls:armhf (7.85.0-1) ...
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Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
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Setting up libgav1-1:armhf (0.18.0-1+rpi1) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up dwz (0.14+20220924-2) ...
Setting up groff-base (1.22.4-8) ...
Setting up libhtml-parser-perl:armhf (3.79-1+b1) ...
Setting up libx11-6:armhf (2:1.8.1-2) ...
Setting up libio-socket-ssl-perl (2.075-1) ...
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Setting up libavif15:armhf (0.11.1-1) ...
Setting up libproj25:armhf (9.1.0-1) ...
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Setting up po-debconf (1.0.21+nmu1) ...
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Setting up man-db (2.11.0-1) ...
Not building database; man-db/auto-update is not 'true'.
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Setting up debhelper (13.10.1) ...
Setting up libwww-perl (6.67-1) ...
Setting up liblwp-protocol-https-perl (6.10-1) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.13.1-4.5) ...
Setting up libgd3:armhf (2.3.3-7) ...
Setting up pdl (1:2.081-1) ...
Setting up sbuild-build-depends-libtfbs-perl-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bioperl_1.7.8-1 bsdextrautils_2.38.1-1.1 bsdutils_1:2.38.1-1.1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.10.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 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libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgsl27_2.7.1+dfsg-3 libgslcblas0_2.7.1+dfsg-3 libgssapi-krb5-2_1.20-1 libhdf4-0-alt_4.2.15-4 libheif1_1.13.0-1 libhogweed6_3.8.1-2 libhtml-parser-perl_3.79-1+b1 libhtml-tagset-perl_3.20-6 libhtml-tree-perl_5.07-2 libhttp-cookies-perl_6.10-1 libhttp-date-perl_6.05-2 libhttp-message-perl_6.41-1 libhttp-negotiate-perl_6.01-1 libicu71_71.1-3 libidn2-0_2.3.3-1 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.075-1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.1.2-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 libldap-2.5-0_2.5.13+dfsg-2+rpi1 liblerc4_4.0.0+ds-2 liblwp-mediatypes-perl_6.04-1 liblwp-protocol-https-perl_6.10-1 liblz4-1_1.9.4-1+rpi1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-1.1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnet-http-perl_6.22-1 libnet-ssleay-perl_1.92-2+b2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.6-3 libpng16-16_1.6.38-2 libpod-parser-perl_1.65-1 libproj25_9.1.0-1 libpsl5_0.21.0-1.2 librav1e0_0.5.1-5 libreadline8_8.2-1 libregexp-ipv6-perl_0.03-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-1.1 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-4 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libsub-override-perl_0.09-4 libsub-uplevel-perl_0.2800-3 libsvtav1enc1_1.2.1+dfsg-1 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libterm-readkey-perl_2.38-2+b1 libtest-deep-perl_1.130-2 libtest-differences-perl_0.69-1 libtest-exception-perl_0.43-2 libtest-most-perl_0.38-1 libtest-warn-perl_0.37-1 libtext-balanced-perl_2.06-1 libtext-diff-perl_1.45-1 libtiff5_4.4.0-5 libtimedate-perl_2.3300-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtry-tiny-perl_0.31-2 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 liburi-perl_5.16-1 libuuid1_2.38.1-1.1 libwebp7_1.2.2-2 libwww-perl_6.67-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libx265-199_3.5-2 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxml2_2.9.14+dfsg-1 libxpm4_1:3.5.12-1 libxxhash0_0.8.1-1 libyuv0_0.0~git20221018.8084f0b-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.0-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-1.1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.5-4 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 pdl_1:2.081-1 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 perl-openssl-defaults_7+b1 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 proj-data_9.1.0-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libtfbs-perl-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 ucf_3.0043 util-linux_2.38.1-1.1 util-linux-extra_2.38.1-1.1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.v8clHWdy/trustedkeys.kbx': General error
gpgv: Signature made Sun Jan 30 07:14:28 2022 UTC
gpgv: using RSA key 8182DE417056408D614650D16750F10AE88D4AF1
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./libtfbs-perl_0.7.1+ds-2.dsc
dpkg-source: info: extracting libtfbs-perl in /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds
dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds.orig.tar.xz
dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying configure.patch
dpkg-source: info: applying spelling-errors.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.7.1+ds-2+b3
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-133e1236-0a92-4794-8034-e39f93c40593
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libtfbs-perl
dpkg-buildpackage: info: source version 0.7.1+ds-2+b3
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now"
-------------------------------------------------
WARNING
-------------------------------------------------
GD.pm does not seem to be installed.
GD is reqired to produce "sequence logos" from
information content matrices. If you need this
functionality, please visit
http://stein.cshl.org/WWW/software/GD/
for information on obtaining and installing GD.
-------------------------------------------------
Do you have write access to a MySQL database server? [n] Checking if your kit is complete...
Warning: the following files are missing in your kit:
README
Please inform the author.
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for TFBS
Writing MYMETA.yml and MYMETA.json
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
make[2]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/Ext'
Running Mkbootstrap for pwmsearch ()
"/usr/bin/perl" "/usr/share/perl/5.36.0/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.36/ExtUtils/typemap' pwmsearch.xs > pwmsearch.xsc
chmod 644 "pwmsearch.bs"
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644
Skip ../blib/lib/pwm_search.h (unchanged)
cp lib/pwm_searchPFF.c ../blib/lib/pwm_searchPFF.c
Skip ../blib/lib/TFBS/Ext/pwmsearch.pm (unchanged)
Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Gibbs/Motif.pm (unchanged)
Skip blib/lib/TFBS/Matrix/PWM.pm (unchanged)
Skip blib/lib/TFBS/SitePairSet.pm (unchanged)
cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm
Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Elph.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/MEME.pm (unchanged)
Skip blib/lib/TFBS/DB.pm (unchanged)
cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm
cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm
cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm
Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged)
Skip blib/lib/TFBS/Site.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Gibbs.pm (unchanged)
cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm
cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm
cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm
cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm
cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm
cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm
Skip blib/lib/TFBS/SiteSet.pm (unchanged)
cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm
cp TFBS/README.md blib/lib/TFBS/README.md
Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged)
cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm
Skip blib/lib/TFBS/PatternI.pm (unchanged)
cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm
Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged)
Skip blib/lib/TFBS/DB/JASPAR2.pm (unchanged)
Skip blib/lib/TFBS/PatternGenI.pm (unchanged)
Skip blib/lib/TFBS/DB/LocalTRANSFAC.pm (unchanged)
cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm
Skip blib/lib/TFBS/PatternGen/SimplePFM.pm (unchanged)
cp TFBS/Matrix/ICM.pm blib/lib/TFBS/Matrix/ICM.pm
Skip blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged)
Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged)
cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm
cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm
cp TFBS/DB/JASPAR7.pm blib/lib/TFBS/DB/JASPAR7.pm
cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm
Please specify prototyping behavior for pwmsearch.xs (see perlxs manual)
mv pwmsearch.xsc pwmsearch.c
arm-linux-gnueabihf-gcc -c -I. -I./lib -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.2\" -DXS_VERSION=\"0.2\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" pwmsearch.c
Skip blib/lib/TFBS/Word/Consensus.pm (unchanged)
Skip blib/lib/TFBS/_Iterator.pm (unchanged)
cp TFBS/_Iterator/_MatrixSetIterator.pm blib/lib/TFBS/_Iterator/_MatrixSetIterator.pm
cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm
Skip blib/lib/TFBS/Word.pm (unchanged)
In file included from pwmsearch.xs:4:
./lib/pwm_searchPFF.c: In function 'do_search':
./lib/pwm_searchPFF.c:55:7: warning: implicit declaration of function 'announce' [-Wimplicit-function-declaration]
55 | announce("+++\nEntering main.\n+++\n");
| ^~~~~~~~
./lib/pwm_searchPFF.c:74:9: warning: implicit declaration of function 'get_matrix' [-Wimplicit-function-declaration]
74 | if ( get_matrix(&args,pwm) )
| ^~~~~~~~~~
./lib/pwm_searchPFF.c:90:14: warning: implicit declaration of function 'loop_on_seqs' [-Wimplicit-function-declaration]
90 | else if ( loop_on_seqs(&args,pwm,fp,outfp) )
| ^~~~~~~~~~~~
./lib/pwm_searchPFF.c: At top level:
./lib/pwm_searchPFF.c:159:1: warning: return type defaults to 'int' [-Wimplicit-int]
159 | best_pull(pargs,pbase,pstrand,pscore)
| ^~~~~~~~~
./lib/pwm_searchPFF.c: In function 'do_seq':
./lib/pwm_searchPFF.c:229:18: warning: implicit declaration of function 'save_hit'; did you mean 'save_hptr'? [-Wimplicit-function-declaration]
229 | if ( save_hit(base,0,forward_score,hits,&nhit) )
| ^~~~~~~~
| save_hptr
./lib/pwm_searchPFF.c:239:20: warning: implicit declaration of function 'output' [-Wimplicit-function-declaration]
239 | else if ( output(pargs,seqid,base,seq,0,forward_score,outfp) )
| ^~~~~~
./lib/pwm_searchPFF.c: At top level:
./lib/pwm_searchPFF.c:526:1: warning: return type defaults to 'int' [-Wimplicit-int]
526 | get_sequence(fp,seq_id,sequence)
| ^~~~~~~~~~~~
rm -f ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so
arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong pwmsearch.o -o ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so \
-lm \
chmod 755 ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so
Manifying 1 pod document
make[2]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/Ext'
Manifying 35 pod documents
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
prove --blib t/01_Matrix.t t/02_Search.t t/03_DB_FlatFileDir.t t/05_DB_JASPAR.t t/06_SimplePFM.t t/07_AnnSpec.t t/07_Elph.t t/07_Gibbs.t t/07_MEME.t t/08_DB_LocalTRANSFAC.t t/09_Word_Consensus.t t/10_Tools_SetOperations.t Ext/t/*.t
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152.
t/01_Matrix.t ............... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152.
t/02_Search.t ............... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152.
t/03_DB_FlatFileDir.t ....... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152.
t/05_DB_JASPAR.t ............ ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152.
t/06_SimplePFM.t ............ ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152.
t/07_AnnSpec.t .............. ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152.
t/07_Elph.t ................. ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152.
t/07_Gibbs.t ................ ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152.
t/07_MEME.t ................. ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152.
t/08_DB_LocalTRANSFAC.t ..... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152.
t/09_Word_Consensus.t ....... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152.
t/10_Tools_SetOperations.t .. ok
Ext/t/pwmsearch.t ........... ok
All tests successful.
Files=13, Tests=45, 9 wallclock secs ( 0.12 usr 0.02 sys + 7.92 cusr 1.10 csys = 9.16 CPU)
Result: PASS
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install --destdir=debian/libtfbs-perl/ -a
make -j4 install DESTDIR=/<<BUILDDIR>>/libtfbs-perl-0.7.1\+ds/debian/libtfbs-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
make[2]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/Ext'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/Ext'
Manifying 35 pod documents
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/TFBS/Ext/pwmsearch/pwmsearch.so
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/pwm_search.h
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/pwm_searchPFF.c
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGenI.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternI.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/SitePairSet.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/SiteSet.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/Word.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/_Iterator.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/Site.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/MatrixSet.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/ConservationProfile.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/TFFM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/Matrix.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/README.md
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/SitePair.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/JASPAR2.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/LocalTRANSFAC.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/FlatFileDir.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/JASPAR5.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/JASPAR.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/JASPAR4.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/TRANSFAC.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/JASPAR7.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/JASPAR6.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/Ext/pwmsearch.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/Matrix/PWM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/Matrix/_Alignment.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/Matrix/Alignment.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/Matrix/ICM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/Matrix/PFM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/Elph.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/Gibbs.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/MEME.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/SimplePFM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/AnnSpec.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/YMF.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/AnnSpec/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/Elph/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/Gibbs/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/MEME/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/Motif/Matrix.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/Motif/Word.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/PatternGen/YMF/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/Tools/SetOperations.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/Word/Consensus.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/_Iterator/_MatrixSetIterator.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/_Iterator/_SiteSetIterator.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/Run/ConservationProfileGenerator.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::FlatFileDir.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Ext::pwmsearch.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::ICM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PFM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PWM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::MatrixSet.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::SimplePFM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternI.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePair.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePairSet.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SiteSet.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word::Consensus.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR2.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::LocalTRANSFAC.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::TRANSFAC.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR4.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Site.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR5.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR6.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR7.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::Alignment.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::TFFM.3pm
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_installexamples
mkdir -p debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext
cp -a Ext/t debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext
for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_installman -a
dh_lintian -a
debian/rules override_dh_perl
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_perl
dh_pdl
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_fixperms
find debian -name pwmsearch.bundle -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.1+ds-2+b3_armhf.deb'.
dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.1+ds-2+b3_armhf.deb'.
dpkg-genbuildinfo --build=any -O../libtfbs-perl_0.7.1+ds-2+b3_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../libtfbs-perl_0.7.1+ds-2+b3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-11-02T11:19:15Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libtfbs-perl_0.7.1+ds-2+b3_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Sun, 30 Jan 2022 08:03:13 +0100
Source: libtfbs-perl (0.7.1+ds-2)
Binary: libtfbs-perl libtfbs-perl-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.7.1+ds-2+b3
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
libtfbs-perl - scanning DNA sequence with a position weight matrix
Changes:
libtfbs-perl (0.7.1+ds-2+b3) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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4c603cc9f32306cc75e1e7ceeefd6c3f7a0f8cf2 8430 libtfbs-perl_0.7.1+ds-2+b3_armhf.buildinfo
a26bcdd332b0ce2500ec1ff565c27a4b1892fd22 231308 libtfbs-perl_0.7.1+ds-2+b3_armhf.deb
Checksums-Sha256:
a4ac122c2493d06695db0cfd89240ee1a881988851f51b58fe1417946aec1a72 33952 libtfbs-perl-dbgsym_0.7.1+ds-2+b3_armhf.deb
9b11facbf535f44516590aa30d244cdf36873ac556d70c649f204fbb92136892 8430 libtfbs-perl_0.7.1+ds-2+b3_armhf.buildinfo
b0fc1a1717848ac964e9902621def6df4be6f365498e708b88dcd67d2e20945d 231308 libtfbs-perl_0.7.1+ds-2+b3_armhf.deb
Files:
189d704ae1728009c8e0f3de1da46c8d 33952 debug optional libtfbs-perl-dbgsym_0.7.1+ds-2+b3_armhf.deb
1d282bb0f3a798e8c06f5dad57e6c522 8430 perl optional libtfbs-perl_0.7.1+ds-2+b3_armhf.buildinfo
322e0b61d9a0a32521b0d94c488255c2 231308 perl optional libtfbs-perl_0.7.1+ds-2+b3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libtfbs-perl-dbgsym_0.7.1+ds-2+b3_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 33952 bytes: control archive=548 bytes.
414 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libtfbs-perl-dbgsym
Source: libtfbs-perl (0.7.1+ds-2)
Version: 0.7.1+ds-2+b3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 46
Depends: libtfbs-perl (= 0.7.1+ds-2+b3)
Section: debug
Priority: optional
Description: debug symbols for libtfbs-perl
Build-Ids: c6e72a61fd07508dad85d59a3edbc8455a0e2a14
drwxr-xr-x root/root 0 2022-01-30 07:03 ./
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/lib/
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/lib/debug/.build-id/c6/
-rw-r--r-- root/root 36656 2022-01-30 07:03 ./usr/lib/debug/.build-id/c6/e72a61fd07508dad85d59a3edbc8455a0e2a14.debug
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/share/
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-01-30 07:03 ./usr/share/doc/libtfbs-perl-dbgsym -> libtfbs-perl
libtfbs-perl_0.7.1+ds-2+b3_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 231308 bytes: control archive=4048 bytes.
1433 bytes, 27 lines control
10186 bytes, 115 lines md5sums
Package: libtfbs-perl
Source: libtfbs-perl (0.7.1+ds-2)
Version: 0.7.1+ds-2+b3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1038
Depends: perl (>= 5.36.0-4), perlapi-5.36.0, pdl (>= 1:2.081-1), pdlapi-20, libc6 (>= 2.7), bioperl, libwww-perl, libdbi-perl
Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl
Section: perl
Priority: optional
Homepage: http://tfbs.genereg.net
Description: scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.
.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136".
.
Note: the TFBS perl module is no longer under active development. All the
functionality can be found in the TFBSTools Bioconductor package; users are
highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
drwxr-xr-x root/root 0 2022-01-30 07:03 ./
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/lib/
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/
-rw-r--r-- root/root 4598 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/ConservationProfile.pm
-rw-r--r-- root/root 326 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB.pm
drwxr-xr-x root/root 0 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/
-rw-r--r-- root/root 13827 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/FlatFileDir.pm
-rw-r--r-- root/root 58675 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/JASPAR.pm
-rw-r--r-- root/root 25422 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/JASPAR2.pm
-rw-r--r-- root/root 22306 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/JASPAR4.pm
-rw-r--r-- root/root 34897 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/JASPAR5.pm
-rw-r--r-- root/root 37977 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/JASPAR6.pm
-rw-r--r-- root/root 58690 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/JASPAR7.pm
-rw-r--r-- root/root 7635 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/LocalTRANSFAC.pm
-rw-r--r-- root/root 7518 2022-01-30 07:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/TFBS/DB/TRANSFAC.pm
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 4900
Build-Time: 34
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 331
Job: libtfbs-perl_0.7.1+ds-2
Machine Architecture: armhf
Package: libtfbs-perl
Package-Time: 385
Source-Version: 0.7.1+ds-2
Space: 4900
Status: successful
Version: 0.7.1+ds-2+b3
--------------------------------------------------------------------------------
Finished at 2022-11-02T11:19:15Z
Build needed 00:06:25, 4900k disk space