libtfbs-perl →
0.7.1+ds-1+b1 →
armhf → 2021-11-15 18:17:32
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| libtfbs-perl 0.7.1+ds-1+b1 (armhf) Mon, 15 Nov 2021 18:03:27 +0000 |
+==============================================================================+
Package: libtfbs-perl
Version: 0.7.1+ds-1+b1
Source Version: 0.7.1+ds-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-e2479861-dee6-4ff4-88a4-c151fc72177b' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.5 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.5 MB]
Fetched 26.0 MB in 32s (812 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libtfbs-perl' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libtfbs-perl.git
Please use:
git clone https://salsa.debian.org/med-team/libtfbs-perl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 207 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main libtfbs-perl 0.7.1+ds-1 (dsc) [2203 B]
Get:2 http://172.17.0.1/private bookworm-staging/main libtfbs-perl 0.7.1+ds-1 (tar) [196 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main libtfbs-perl 0.7.1+ds-1 (diff) [8476 B]
Fetched 207 kB in 0s (670 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libtfbs-perl-18M474/libtfbs-perl-0.7.1+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libtfbs-perl-18M474' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-gXj321/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-gXj321/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-gXj321/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gXj321/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gXj321/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gXj321/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gXj321/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gXj321/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2842 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 856 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gXj321/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 856 B in 0s (22.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12500 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), perl, pdl (>= 1:2.016), bioperl, libwww-perl, libdbi-perl
Filtered Build-Depends: debhelper-compat (= 12), perl, pdl (>= 1:2.016), bioperl, libwww-perl, libdbi-perl
dpkg-deb: building package 'sbuild-build-depends-libtfbs-perl-dummy' in '/<<BUILDDIR>>/resolver-gXj321/apt_archive/sbuild-build-depends-libtfbs-perl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libtfbs-perl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gXj321/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gXj321/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gXj321/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gXj321/apt_archive ./ Sources [527 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gXj321/apt_archive ./ Packages [606 B]
Fetched 2466 B in 1s (3321 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libtfbs-perl build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bioperl bsdextrautils
ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file
fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl
libbrotli1 libbsd0 libcapture-tiny-perl libclass-data-inheritable-perl
libdata-stag-perl libdbi-perl libdebhelper-perl libdeflate0
libdevel-stacktrace-perl libelf1 libencode-locale-perl
libexception-class-perl libexpat1 libfile-listing-perl
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd3
libgfortran5 libgsl25 libgslcblas0 libhtml-parser-perl libhtml-tagset-perl
libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu67 libio-html-perl
libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo
liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1
libmd0 libncurses6 libnet-http-perl libnet-ssleay-perl libpipeline1
libpng16-16 libpod-parser-perl libsigsegv2 libsub-override-perl
libsub-uplevel-perl libterm-readkey-perl libtest-deep-perl
libtest-differences-perl libtest-exception-perl libtest-most-perl
libtest-warn-perl libtext-diff-perl libtiff5 libtimedate-perl libtool
libtry-tiny-perl libuchardet0 liburi-perl libwebp6 libwww-perl
libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxml2 libxpm4 m4 man-db openssl pdl perl-openssl-defaults po-debconf
sensible-utils ucf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libxml-sax-expatxs-perl libclone-perl
libmldbm-perl libnet-daemon-perl libsql-statement-perl libgd-tools
gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libdata-dump-perl
libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk
libbusiness-isbn-perl libauthen-ntlm-perl m4-doc apparmor less www-browser
doc-base libastro-fits-header-perl libdevel-repl-perl libextutils-f77-perl
libfile-map-perl libgl1-mesa-glx | libgl1 libinline-perl libinline-c-perl
libmodule-compile-perl libopengl-perl libpdl-fftw-perl
libpdl-graphics-plplot-perl libpgplot-perl netpbm | imagemagick proj-bin
libmail-box-perl
Recommended packages:
bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libgd-gd2-perl
libapache-dbi-perl libxml-simple-perl libyaml-perl libace-perl
liblist-moreutils-perl libxml-twig-perl libset-scalar-perl curl | wget
| lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl
libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl
libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl
libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl
libsort-naturally-perl libspreadsheet-parseexcel-perl
libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl
libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl
libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk
libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl
libxml-perl libarchive-cpio-perl libhtml-format-perl libgpm2 libltdl-dev
libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl
libterm-readline-gnu-perl | libterm-readline-perl-perl libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bioperl bsdextrautils
ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file
fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl
libbrotli1 libbsd0 libcapture-tiny-perl libclass-data-inheritable-perl
libdata-stag-perl libdbi-perl libdebhelper-perl libdeflate0
libdevel-stacktrace-perl libelf1 libencode-locale-perl
libexception-class-perl libexpat1 libfile-listing-perl
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd3
libgfortran5 libgsl25 libgslcblas0 libhtml-parser-perl libhtml-tagset-perl
libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu67 libio-html-perl
libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo
liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1
libmd0 libncurses6 libnet-http-perl libnet-ssleay-perl libpipeline1
libpng16-16 libpod-parser-perl libsigsegv2 libsub-override-perl
libsub-uplevel-perl libterm-readkey-perl libtest-deep-perl
libtest-differences-perl libtest-exception-perl libtest-most-perl
libtest-warn-perl libtext-diff-perl libtiff5 libtimedate-perl libtool
libtry-tiny-perl libuchardet0 liburi-perl libwebp6 libwww-perl
libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxml2 libxpm4 m4 man-db openssl pdl perl-openssl-defaults po-debconf
sbuild-build-depends-libtfbs-perl-dummy sensible-utils ucf
0 upgraded, 101 newly installed, 0 to remove and 19 not upgraded.
Need to get 33.5 MB of archives.
After this operation, 114 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gXj321/apt_archive ./ sbuild-build-depends-libtfbs-perl-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-4 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.4-1 [31.6 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libterm-readkey-perl armhf 2.38-1+b3 [26.6 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libpod-parser-perl all 1.63-2 [96.1 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-3 [80.1 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.0+dfsg-1 [386 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-2 [272 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libgd3 armhf 2.3.0-2 [116 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-10+rpi1 [234 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.6+dfsg-2 [79.5 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libgsl25 armhf 2.6+dfsg-2 [753 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf pdl armhf 1:2.061-1 [2971 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.5-1 [823 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libio-string-perl all 1.08-3.1 [11.8 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libdata-stag-perl all 0.14-2 [448 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libbio-perl-perl all 1.7.8-1 [2603 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libexception-class-perl all 1.45-1 [34.6 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libtest-deep-perl all 1.130-1 [49.3 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libtext-diff-perl all 1.45-1 [27.7 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libtest-differences-perl all 0.68-1 [19.8 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libsub-uplevel-perl all 0.2800-1.1 [16.5 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libtest-exception-perl all 0.43-1 [18.7 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libtest-warn-perl all 0.36-1 [16.2 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libtest-most-perl all 0.37-1 [24.9 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf bioperl all 1.7.8-1 [246 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf openssl armhf 1.1.1l-1 [815 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-2 [15.5 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libdbi-perl armhf 1.643-3+b1 [770 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libfile-listing-perl all 6.14-1 [12.4 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libhtml-tagset-perl all 3.20-4 [13.0 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf liburi-perl all 5.10-1 [91.0 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libhtml-parser-perl armhf 3.76-1 [102 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libhtml-tree-perl all 5.07-2 [213 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libhttp-message-perl all 6.34-1 [80.2 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf perl-openssl-defaults armhf 5 [7360 B]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libnet-ssleay-perl armhf 1.88-3+b1 [300 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libio-socket-ssl-perl all 2.072-1 [221 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libnet-http-perl all 6.21-1 [25.3 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libwww-perl all 6.58-1 [193 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
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Setting up libsub-uplevel-perl (0.2800-1.1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libdevel-stacktrace-perl (2.0400-1) ...
Setting up libtiff5:armhf (4.3.0-2) ...
Setting up libbio-perl-perl (1.7.8-1) ...
Setting up libterm-readkey-perl (2.38-1+b3) ...
Setting up openssl (1.1.1l-1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up liburi-perl (5.10-1) ...
Setting up libdbi-perl:armhf (1.643-3+b1) ...
Setting up libnet-ssleay-perl (1.88-3+b1) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-2) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up libfile-listing-perl (6.14-1) ...
Setting up libtool (2.4.6-15) ...
Setting up libtest-warn-perl (0.36-1) ...
Setting up libtest-differences-perl (0.68-1) ...
Setting up libnet-http-perl (6.21-1) ...
Setting up m4 (1.4.18-5) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libtest-exception-perl (0.43-1) ...
Setting up libfreetype6:armhf (2.11.0+dfsg-1) ...
Setting up ucf (3.0043) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.0-2) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up libhtml-parser-perl:armhf (3.76-1) ...
Setting up libx11-6:armhf (2:1.7.2-2) ...
Setting up libio-socket-ssl-perl (2.072-1) ...
Setting up libhttp-message-perl (6.34-1) ...
Setting up automake (1:1.16.5-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhttp-negotiate-perl (6.01-1) ...
Setting up libxpm4:armhf (1:3.5.12-1) ...
Setting up libhttp-cookies-perl (6.10-1) ...
Setting up libtest-most-perl (0.37-1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhtml-tree-perl (5.07-2) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up bioperl (1.7.8-1) ...
Setting up debhelper (13.5.2) ...
Setting up libgd3:armhf (2.3.0-2) ...
Setting up pdl (1:2.061-1) ...
Setting up libwww-perl (6.58-1) ...
Setting up sbuild-build-depends-libtfbs-perl-dummy (0.invalid.0) ...
Setting up liblwp-protocol-https-perl (6.10-1) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.9-2+rpi1
Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bioperl_1.7.8-1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 dash_0.5.11+git20210903+057cd650a4ed-1 debconf_1.5.78 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libalgorithm-diff-perl_1.201-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan6_11.2.0-10+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-10+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-5+rpi1 libbio-perl-perl_1.7.8-1 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcapture-tiny-perl_0.48-1 libcc1-0_11.2.0-10+rpi1 libclass-data-inheritable-perl_0.08-3 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libdata-stag-perl_0.14-2 libdb5.3_5.3.28+dfsg1-0.8 libdbi-perl_1.643-3+b1 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdeflate0_1.8-1 libdevel-stacktrace-perl_2.0400-1 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libencode-locale-perl_1.05-1.1 libexception-class-perl_1.45-1 libexpat1_2.4.1-3 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-listing-perl_6.14-1 libfile-stripnondeterminism-perl_1.12.0-2 libfontconfig1_2.13.1-4.2 libfreetype6_2.11.0+dfsg-1 libgcc-10-dev_10.3.0-11+rpi1 libgcc-s1_11.2.0-10+rpi1 libgcrypt20_1.9.4-3 libgd3_2.3.0-2 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran5_11.2.0-10+rpi1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10+rpi1 libgpg-error0_1.42-3 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhtml-parser-perl_3.76-1 libhtml-tagset-perl_3.20-4 libhtml-tree-perl_5.07-2 libhttp-cookies-perl_6.10-1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.34-1 libhttp-negotiate-perl_6.01-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-html-perl_1.004-2 libio-socket-ssl-perl_2.072-1 libio-string-perl_1.08-3.1 libisl23_0.24-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.6-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblwp-mediatypes-perl_6.04-1 liblwp-protocol-https-perl_6.10-1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.4-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-4 libncursesw6_6.2+20201114-4 libnet-http-perl_6.21-1 libnet-ssleay-perl_1.88-3+b1 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.4-1 libpng16-16_1.6.37-3 libpod-parser-perl_1.63-2 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 libsub-override-perl_0.09-2 libsub-uplevel-perl_0.2800-1.1 libsystemd0_249.5-1+rpi1 libtasn1-6_4.17.0-2 libterm-readkey-perl_2.38-1+b3 libtest-deep-perl_1.130-1 libtest-differences-perl_0.68-1 libtest-exception-perl_0.43-1 libtest-most-perl_0.37-1 libtest-warn-perl_0.36-1 libtext-charwidth-perl_0.04-10+b1 libtext-diff-perl_1.45-1 libtext-iconv-perl_1.7-7+b1 libtiff5_4.3.0-2 libtimedate-perl_2.3300-2 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtry-tiny-perl_0.30-1 libubsan1_11.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_249.5-1+rpi1 libunistring2_0.9.10-6 liburi-perl_5.10-1 libuuid1_2.37.2-4 libwebp6_0.6.1-2.1 libwww-perl_6.58-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxml2_2.9.12+dfsg-5 libxpm4_1:3.5.12-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.9-2+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 openssl_1.1.1l-1 passwd_1:4.8.1-1 patch_2.7.6-7 pdl_1:2.061-1 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 perl-openssl-defaults_5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libtfbs-perl-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.IhWxFwEC/trustedkeys.kbx': General error
gpgv: Signature made Sat Nov 13 11:05:07 2021 UTC
gpgv: using RSA key 8182DE417056408D614650D16750F10AE88D4AF1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libtfbs-perl_0.7.1+ds-1.dsc
dpkg-source: info: extracting libtfbs-perl in /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds
dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds.orig.tar.xz
dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying configure.patch
dpkg-source: info: applying spelling-errors.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.7.1+ds-1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-e2479861-dee6-4ff4-88a4-c151fc72177b
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libtfbs-perl
dpkg-buildpackage: info: source version 0.7.1+ds-1+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now"
-------------------------------------------------
WARNING
-------------------------------------------------
GD.pm does not seem to be installed.
GD is reqired to produce "sequence logos" from
information content matrices. If you need this
functionality, please visit
http://stein.cshl.org/WWW/software/GD/
for information on obtaining and installing GD.
-------------------------------------------------
Do you have write access to a MySQL database server? [n] Checking if your kit is complete...
Warning: the following files are missing in your kit:
README
Please inform the author.
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for TFBS
Writing MYMETA.yml and MYMETA.json
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
make[2]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/Ext'
Running Mkbootstrap for pwmsearch ()
"/usr/bin/perl" "/usr/share/perl/5.32.1/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.32/ExtUtils/typemap' pwmsearch.xs > pwmsearch.xsc
chmod 644 "pwmsearch.bs"
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644
cp lib/pwm_searchPFF.c ../blib/lib/pwm_searchPFF.c
Skip ../blib/lib/pwm_search.h (unchanged)
Skip ../blib/lib/TFBS/Ext/pwmsearch.pm (unchanged)
cp TFBS/DB/JASPAR7.pm blib/lib/TFBS/DB/JASPAR7.pm
Skip blib/lib/TFBS/PatternGen/MEME.pm (unchanged)
cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm
Skip blib/lib/TFBS/Site.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged)
cp TFBS/README.md blib/lib/TFBS/README.md
cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm
cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm
cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm
Skip blib/lib/TFBS/DB/JASPAR2.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Gibbs/Motif.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged)
cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm
Skip blib/lib/TFBS/PatternGenI.pm (unchanged)
Skip blib/lib/TFBS/DB.pm (unchanged)
cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm
Skip blib/lib/TFBS/PatternGen/SimplePFM.pm (unchanged)
cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm
cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm
cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm
Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged)
Skip blib/lib/TFBS/SiteSet.pm (unchanged)
Skip blib/lib/TFBS/Matrix/PWM.pm (unchanged)
Skip blib/lib/TFBS/PatternI.pm (unchanged)
Skip blib/lib/TFBS/SitePairSet.pm (unchanged)
cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm
cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm
Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Gibbs.pm (unchanged)
cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm
cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm
Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged)
cp TFBS/Matrix/ICM.pm blib/lib/TFBS/Matrix/ICM.pm
cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm
cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm
Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged)
Skip blib/lib/TFBS/PatternGen/Elph.pm (unchanged)
cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm
Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged)
Skip blib/lib/TFBS/DB/LocalTRANSFAC.pm (unchanged)
cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm
Please specify prototyping behavior for pwmsearch.xs (see perlxs manual)
mv pwmsearch.xsc pwmsearch.c
arm-linux-gnueabihf-gcc -c -I. -I./lib -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.2\" -DXS_VERSION=\"0.2\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE" pwmsearch.c
Skip blib/lib/TFBS/_Iterator.pm (unchanged)
Skip blib/lib/TFBS/Word/Consensus.pm (unchanged)
cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm
Skip blib/lib/TFBS/Word.pm (unchanged)
cp TFBS/_Iterator/_MatrixSetIterator.pm blib/lib/TFBS/_Iterator/_MatrixSetIterator.pm
In file included from pwmsearch.xs:4:
./lib/pwm_searchPFF.c: In function 'do_search':
./lib/pwm_searchPFF.c:55:7: warning: implicit declaration of function 'announce' [-Wimplicit-function-declaration]
55 | announce("+++\nEntering main.\n+++\n");
| ^~~~~~~~
./lib/pwm_searchPFF.c:74:9: warning: implicit declaration of function 'get_matrix' [-Wimplicit-function-declaration]
74 | if ( get_matrix(&args,pwm) )
| ^~~~~~~~~~
./lib/pwm_searchPFF.c:90:14: warning: implicit declaration of function 'loop_on_seqs' [-Wimplicit-function-declaration]
90 | else if ( loop_on_seqs(&args,pwm,fp,outfp) )
| ^~~~~~~~~~~~
./lib/pwm_searchPFF.c: At top level:
./lib/pwm_searchPFF.c:159:1: warning: return type defaults to 'int' [-Wimplicit-int]
159 | best_pull(pargs,pbase,pstrand,pscore)
| ^~~~~~~~~
./lib/pwm_searchPFF.c: In function 'do_seq':
./lib/pwm_searchPFF.c:229:18: warning: implicit declaration of function 'save_hit'; did you mean 'save_hptr'? [-Wimplicit-function-declaration]
229 | if ( save_hit(base,0,forward_score,hits,&nhit) )
| ^~~~~~~~
| save_hptr
./lib/pwm_searchPFF.c:239:20: warning: implicit declaration of function 'output' [-Wimplicit-function-declaration]
239 | else if ( output(pargs,seqid,base,seq,0,forward_score,outfp) )
| ^~~~~~
./lib/pwm_searchPFF.c: At top level:
./lib/pwm_searchPFF.c:526:1: warning: return type defaults to 'int' [-Wimplicit-int]
526 | get_sequence(fp,seq_id,sequence)
| ^~~~~~~~~~~~
rm -f ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so
arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong pwmsearch.o -o ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so \
-lm \
chmod 755 ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so
Manifying 1 pod document
make[2]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/Ext'
Manifying 35 pod documents
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
prove --blib t/01_Matrix.t t/02_Search.t t/03_DB_FlatFileDir.t t/05_DB_JASPAR.t t/06_SimplePFM.t t/07_AnnSpec.t t/07_Elph.t t/07_Gibbs.t t/07_MEME.t t/08_DB_LocalTRANSFAC.t t/09_Word_Consensus.t t/10_Tools_SetOperations.t Ext/t/*.t
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 197.
t/01_Matrix.t ............... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 197.
t/02_Search.t ............... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 197.
t/03_DB_FlatFileDir.t ....... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 197.
t/05_DB_JASPAR.t ............ ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 197.
t/06_SimplePFM.t ............ ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 197.
t/07_AnnSpec.t .............. ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 197.
t/07_Elph.t ................. ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 197.
t/07_Gibbs.t ................ ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 197.
t/07_MEME.t ................. ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 197.
t/08_DB_LocalTRANSFAC.t ..... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 197.
t/09_Word_Consensus.t ....... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 197.
t/10_Tools_SetOperations.t .. ok
Ext/t/pwmsearch.t ........... ok
All tests successful.
Files=13, Tests=45, 32 wallclock secs ( 0.39 usr 0.10 sys + 29.27 cusr 1.45 csys = 31.21 CPU)
Result: PASS
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install --destdir=debian/libtfbs-perl/ -a
make -j4 install DESTDIR=/<<BUILDDIR>>/libtfbs-perl-0.7.1\+ds/debian/libtfbs-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
make[2]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/Ext'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/Ext'
Manifying 35 pod documents
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/auto/TFBS/Ext/pwmsearch/pwmsearch.so
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/pwm_search.h
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/pwm_searchPFF.c
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGenI.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternI.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/SitePairSet.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/SiteSet.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Word.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/_Iterator.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Site.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/ConservationProfile.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/README.md
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/MatrixSet.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/SitePair.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/TFFM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR2.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/LocalTRANSFAC.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR7.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR5.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR6.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR4.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/FlatFileDir.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/TRANSFAC.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Ext/pwmsearch.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/PWM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/_Alignment.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/ICM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/Alignment.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/PFM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Elph.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Gibbs.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/MEME.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/SimplePFM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/AnnSpec.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/YMF.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/AnnSpec/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Elph/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Gibbs/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/MEME/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Motif/Matrix.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Motif/Word.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/YMF/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Tools/SetOperations.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Word/Consensus.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/_Iterator/_SiteSetIterator.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/_Iterator/_MatrixSetIterator.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Run/ConservationProfileGenerator.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::FlatFileDir.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Ext::pwmsearch.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::ICM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PFM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PWM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::MatrixSet.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::SimplePFM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternI.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePair.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePairSet.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SiteSet.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word::Consensus.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR2.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::LocalTRANSFAC.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::TRANSFAC.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR4.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Site.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR5.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR6.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR7.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::Alignment.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::TFFM.3pm
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_installexamples
mkdir -p debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext
cp -a Ext/t debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext
for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_installman -a
dh_lintian -a
debian/rules override_dh_perl
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_perl
dh_pdl
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_fixperms
find debian -name pwmsearch.bundle -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.1+ds'
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.1+ds-1+b1_armhf.deb'.
dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.1+ds-1+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libtfbs-perl_0.7.1+ds-1+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-11-15T18:17:26Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libtfbs-perl_0.7.1+ds-1+b1_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Sat, 13 Nov 2021 11:59:50 +0100
Source: libtfbs-perl (0.7.1+ds-1)
Binary: libtfbs-perl libtfbs-perl-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.7.1+ds-1+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
libtfbs-perl - scanning DNA sequence with a position weight matrix
Changes:
libtfbs-perl (0.7.1+ds-1+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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21650172aec0d716afd5e52c0d4f03de3b02fed4 233660 libtfbs-perl_0.7.1+ds-1+b1_armhf.deb
Checksums-Sha256:
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ad479d8713934a35cfb153c6ca6a513a7f9f48ba5eded2e197ac4a12e0304b8c 7415 libtfbs-perl_0.7.1+ds-1+b1_armhf.buildinfo
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Files:
9f8a6a30cf437f40ed3364610640a1ff 34836 debug optional libtfbs-perl-dbgsym_0.7.1+ds-1+b1_armhf.deb
2334eb16ec61a81f748f7fbb02063bcf 7415 perl optional libtfbs-perl_0.7.1+ds-1+b1_armhf.buildinfo
009291203121b2a815b9e70caec21069 233660 perl optional libtfbs-perl_0.7.1+ds-1+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libtfbs-perl-dbgsym_0.7.1+ds-1+b1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 34836 bytes: control archive=548 bytes.
414 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libtfbs-perl-dbgsym
Source: libtfbs-perl (0.7.1+ds-1)
Version: 0.7.1+ds-1+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 47
Depends: libtfbs-perl (= 0.7.1+ds-1+b1)
Section: debug
Priority: optional
Description: debug symbols for libtfbs-perl
Build-Ids: acf6ca079659cbe9764e4cb685d4654ee9ff5ed2
drwxr-xr-x root/root 0 2021-11-13 10:59 ./
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/debug/.build-id/ac/
-rw-r--r-- root/root 37488 2021-11-13 10:59 ./usr/lib/debug/.build-id/ac/f6ca079659cbe9764e4cb685d4654ee9ff5ed2.debug
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/share/
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-11-13 10:59 ./usr/share/doc/libtfbs-perl-dbgsym -> libtfbs-perl
libtfbs-perl_0.7.1+ds-1+b1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 233660 bytes: control archive=4040 bytes.
1418 bytes, 27 lines control
10186 bytes, 115 lines md5sums
Package: libtfbs-perl
Source: libtfbs-perl (0.7.1+ds-1)
Version: 0.7.1+ds-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 988
Depends: perl, perlapi-5.32.1, pdl (>= 1:2.061-1), pdlapi-18, libc6 (>= 2.7), bioperl, libwww-perl, libdbi-perl
Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl
Section: perl
Priority: optional
Homepage: http://tfbs.genereg.net
Description: scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.
.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136".
.
Note: the TFBS perl module is no longer under active development. All the
functionality can be found in the TFBSTools Bioconductor package; users are
highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
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drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/
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drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/
-rw-r--r-- root/root 4598 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/ConservationProfile.pm
-rw-r--r-- root/root 326 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB.pm
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/
-rw-r--r-- root/root 13827 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/FlatFileDir.pm
-rw-r--r-- root/root 58675 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR.pm
-rw-r--r-- root/root 25422 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR2.pm
-rw-r--r-- root/root 22306 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR4.pm
-rw-r--r-- root/root 34897 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR5.pm
-rw-r--r-- root/root 37977 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR6.pm
-rw-r--r-- root/root 58690 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/JASPAR7.pm
-rw-r--r-- root/root 7635 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/LocalTRANSFAC.pm
-rw-r--r-- root/root 7518 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/DB/TRANSFAC.pm
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Ext/
-rw-r--r-- root/root 3800 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Ext/pwmsearch.pm
-rw-r--r-- root/root 10889 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix.pm
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/
-rw-r--r-- root/root 7273 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/Alignment.pm
-rw-r--r-- root/root 32506 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/ICM.pm
-rw-r--r-- root/root 16092 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/PFM.pm
-rw-r--r-- root/root 15506 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/PWM.pm
-rw-r--r-- root/root 12028 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Matrix/_Alignment.pm
-rw-r--r-- root/root 20864 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/MatrixSet.pm
-rw-r--r-- root/root 4803 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen.pm
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/
-rw-r--r-- root/root 6478 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/AnnSpec.pm
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/AnnSpec/
-rw-r--r-- root/root 1225 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/AnnSpec/Motif.pm
-rw-r--r-- root/root 8335 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/PatternGen/Elph.pm
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-rw-r--r-- root/root 28 2017-03-07 12:21 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/README.md
drwxr-xr-x root/root 0 2021-11-13 10:59 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/TFBS/Run/
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-rw-r--r-- root/root 2353 2021-11-13 10:59 ./usr/share/man/man3/TFBS::Word::Consensus.3pm.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 4860
Build-Time: 109
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 671
Job: libtfbs-perl_0.7.1+ds-1
Machine Architecture: armhf
Package: libtfbs-perl
Package-Time: 839
Source-Version: 0.7.1+ds-1
Space: 4860
Status: successful
Version: 0.7.1+ds-1+b1
--------------------------------------------------------------------------------
Finished at 2021-11-15T18:17:26Z
Build needed 00:13:59, 4860k disc space