libtfbs-perl →
0.7.0+dfsg-3 →
armhf → 2016-07-22 05:27:15
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-03
+==============================================================================+
| libtfbs-perl 0.7.0+dfsg-3 (armhf) 22 Jul 2016 05:15 |
+==============================================================================+
Package: libtfbs-perl
Version: 0.7.0+dfsg-3
Source Version: 0.7.0+dfsg-3
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/libtfbs-perl-hFN_cW/libtfbs-perl-0.7.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libtfbs-perl-hFN_cW' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-c73b36f6-29ff-4fe2-b66c-8dbdebb1e10d' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9182 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.1 MB]
Fetched 20.3 MB in 22s (907 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libtfbs-perl' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/libtfbs-perl.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/libtfbs-perl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 182 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main libtfbs-perl 0.7.0+dfsg-3 (dsc) [2201 B]
Get:2 http://172.17.0.1/private stretch-staging/main libtfbs-perl 0.7.0+dfsg-3 (tar) [173 kB]
Get:3 http://172.17.0.1/private stretch-staging/main libtfbs-perl 0.7.0+dfsg-3 (diff) [7040 B]
Fetched 182 kB in 0s (2008 kB/s)
Download complete and in download only mode
Check architectures
-------------------
Check dependencies
------------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-X6zzbx/apt_archive/sbuild-build-depends-core-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-X6zzbx/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-X6zzbx/apt_archive ./ InRelease
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Get:4 file:/<<BUILDDIR>>/resolver-X6zzbx/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-X6zzbx/apt_archive ./ Packages [526 B]
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Reading package lists...
+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 31 not upgraded.
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Get:1 file:/<<BUILDDIR>>/resolver-X6zzbx/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
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W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: debhelper (>= 9), perl, pdl (>= 1:2.016), bioperl, libwww-perl, libdbi-perl
Filtered Build-Depends: debhelper (>= 9), perl, pdl (>= 1:2.016), bioperl, libwww-perl, libdbi-perl
dpkg-deb: building package 'sbuild-build-depends-libtfbs-perl-dummy' in '/<<BUILDDIR>>/resolver-YVCOdE/apt_archive/sbuild-build-depends-libtfbs-perl-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-YVCOdE/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-YVCOdE/apt_archive ./ InRelease
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Get:2 file:/<<BUILDDIR>>/resolver-YVCOdE/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-YVCOdE/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-YVCOdE/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-YVCOdE/apt_archive ./ Sources [245 B]
Get:5 file:/<<BUILDDIR>>/resolver-YVCOdE/apt_archive ./ Packages [558 B]
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W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-YVCOdE/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install libtfbs-perl build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bioperl bsdmainutils
ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism file
fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbio-perl-perl libbsd0 libcroco3
libdata-stag-perl libdbi-perl libencode-locale-perl libexpat1 libffi6
libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libgd3 libgfortran3 libglib2.0-0 libgsl2 libhdf4-0-alt
libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
libhttp-negotiate-perl libicu55 libio-html-perl libio-socket-ssl-perl
libio-string-perl libjbig0 libjpeg62-turbo liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl
libpipeline1 libpng16-16 libproj9 libsigsegv2 libssl1.0.2
libterm-readkey-perl libtiff5 libtimedate-perl libtool libunistring0
liburi-perl libwebp5 libwww-perl libwww-robotrules-perl libx11-6 libx11-data
libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 m4 man-db openssl pdl po-debconf
proj-data ucf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libxml-sax-expatxs-perl libclone-perl libmldbm-perl libnet-daemon-perl
libsql-statement-perl libgd-tools gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info
| gsl-ref-html libhdf4-doc libhdf4-alt-dev hdf4-tools libdata-dump-perl
libcrypt-ssleay-perl proj-bin libtool-doc gfortran | fortran95-compiler
gcj-jdk libauthen-ntlm-perl less www-browser doc-base
libastro-fits-header-perl libdevel-repl-perl libextutils-f77-perl
libfile-map-perl libgl1-mesa-glx | libgl1 libinline-perl libinline-c-perl
libmodule-compile-perl libopengl-perl libpdl-fftw-perl
libpdl-graphics-plplot-perl libpgplot-perl netpbm | imagemagick
libmail-box-perl
Recommended packages:
bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libgd-gd2-perl
libapache-dbi-perl libxml-simple-perl libyaml-perl libace-perl
liblist-moreutils-perl libxml-twig-perl libset-scalar-perl curl | wget
| lynx-cur bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl
libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl
libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl
libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl
libsort-naturally-perl libspreadsheet-parseexcel-perl
libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl
libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl
libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk
libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl
libxml-perl libglib2.0-data shared-mime-info xdg-user-dirs
libhtml-format-perl libltdl-dev libhtml-form-perl libhttp-daemon-perl
libmailtools-perl xml-core libterm-readline-gnu-perl
| libterm-readline-perl-perl libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bioperl bsdmainutils
ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism file
fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbio-perl-perl libbsd0 libcroco3
libdata-stag-perl libdbi-perl libencode-locale-perl libexpat1 libffi6
libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libgd3 libgfortran3 libglib2.0-0 libgsl2 libhdf4-0-alt
libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
libhttp-negotiate-perl libicu55 libio-html-perl libio-socket-ssl-perl
libio-string-perl libjbig0 libjpeg62-turbo liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl
libpipeline1 libpng16-16 libproj9 libsigsegv2 libssl1.0.2
libterm-readkey-perl libtiff5 libtimedate-perl libtool libunistring0
liburi-perl libwebp5 libwww-perl libwww-robotrules-perl libx11-6 libx11-data
libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 m4 man-db openssl pdl po-debconf
proj-data sbuild-build-depends-libtfbs-perl-dummy ucf
0 upgraded, 82 newly installed, 0 to remove and 31 not upgraded.
Need to get 32.7 MB/40.9 MB of archives.
After this operation, 137 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-YVCOdE/apt_archive ./ sbuild-build-depends-libtfbs-perl-dummy 0.invalid.0 [796 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libxdmcp6 armhf 1:1.1.2-1.1 [24.9 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libxcb1 armhf 1.11.1-1 [40.9 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libx11-data all 2:1.6.3-1 [128 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libterm-readkey-perl armhf 2.33-1+b1 [29.4 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libpng16-16 armhf 1.6.23-1 [260 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libfreetype6 armhf 2.6.3-3+b1 [385 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf fonts-dejavu-core all 2.36-1 [1068 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf fontconfig-config all 2.11.0-6.4 [271 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libfontconfig1 armhf 2.11.0-6.4 [313 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.5.0-1 [109 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libtiff5 armhf 4.0.6-2 [203 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libwebp5 armhf 0.4.4-1.1 [175 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libxpm4 armhf 1:3.5.11-1+b1 [42.4 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libgd3 armhf 2.2.1-1 [117 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.1.1-1+rpi1 [166 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libgsl2 armhf 2.1+dfsg-2 [697 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libhdf4-0-alt armhf 4.2.12-1 [235 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf proj-data all 4.9.2-3 [4058 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libproj9 armhf 4.9.2-3 [139 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf pdl armhf 1:2.016-4 [3466 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2h-1 [889 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-2 [269 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-2 [62.4 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libio-string-perl all 1.08-3 [12.3 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libdata-stag-perl all 0.14-2 [448 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libbio-perl-perl all 1.6.924-5 [4746 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf bioperl all 1.6.924-5 [418 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf openssl armhf 1.0.2h-1 [667 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf ca-certificates all 20160104 [200 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.48.1-2 [2546 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.019-1 [12.2 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.019-1 [7352 B]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160709 [799 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libdbi-perl armhf 1.636-1 [761 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libencode-locale-perl all 1.05-1 [13.7 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libhttp-date-perl all 6.02-1 [10.7 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libfile-listing-perl all 6.04-1 [10.3 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libhtml-tagset-perl all 3.20-2 [13.5 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf liburi-perl all 1.71-1 [88.6 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libhtml-parser-perl armhf 3.72-2 [101 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libhtml-tree-perl all 5.03-2 [210 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libio-html-perl all 1.001-1 [17.6 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf liblwp-mediatypes-perl all 6.02-1 [22.1 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libhttp-message-perl all 6.11-1 [75.9 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libhttp-cookies-perl all 6.01-1 [17.4 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libhttp-negotiate-perl all 6.00-2 [13.6 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libnet-ssleay-perl armhf 1.74-1 [264 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libio-socket-ssl-perl all 2.029-1 [191 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libnet-http-perl all 6.09-1 [25.1 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libwww-robotrules-perl all 6.01-1 [14.3 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libwww-perl all 6.15-1 [195 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf liblwp-protocol-https-perl all 6.06-2 [9582 B]
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Processing triggers for libc-bin (2.23-1+rpi1) ...
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Setting up libpng16-16:armhf (1.6.23-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up libsigsegv2:armhf (2.10-5) ...
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Setting up libgfortran3:armhf (6.1.1-1+rpi1) ...
Setting up groff-base (1.22.3-8) ...
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Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up libgsl2:armhf (2.1+dfsg-2) ...
Setting up m4 (1.4.17-5) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up ucf (3.0036) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1.2) ...
Setting up libterm-readkey-perl (2.33-1+b1) ...
Setting up libfreetype6:armhf (2.6.3-3+b1) ...
Setting up libmagic1:armhf (1:5.28-2) ...
Setting up libssl1.0.2:armhf (1.0.2h-1) ...
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Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up liburi-perl (1.71-1) ...
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Setting up openssl (1.0.2h-1) ...
Setting up libio-string-perl (1.08-3) ...
Setting up libnet-http-perl (6.09-1) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libxdmcp6:armhf (1:1.1.2-1.1) ...
Setting up libhdf4-0-alt (4.2.12-1) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up ca-certificates (20160104) ...
Setting up libwebp5:armhf (0.4.4-1.1) ...
Setting up libwww-robotrules-perl (6.01-1) ...
Setting up libdbi-perl (1.636-1) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libdata-stag-perl (0.14-2) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up autopoint (0.19.8.1-1) ...
Setting up proj-data (4.9.2-3) ...
Setting up libfile-stripnondeterminism-perl (0.019-1) ...
Setting up fontconfig-config (2.11.0-6.4) ...
Setting up libhttp-date-perl (6.02-1) ...
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Setting up libnet-ssleay-perl (1.74-1) ...
Setting up libglib2.0-0:armhf (2.48.1-2) ...
No schema files found: doing nothing.
Setting up autoconf (2.69-10) ...
Setting up file (1:5.28-2) ...
Setting up libio-socket-ssl-perl (2.029-1) ...
Setting up libhtml-tree-perl (5.03-2) ...
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up libproj9 (4.9.2-3) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up bioperl (1.6.924-5) ...
Setting up libfile-listing-perl (6.04-1) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libhttp-message-perl (6.11-1) ...
Setting up libxcb1:armhf (1.11.1-1) ...
Setting up libhttp-negotiate-perl (6.00-2) ...
Setting up libtool (2.4.6-0.1) ...
Setting up libfontconfig1:armhf (2.11.0-6.4) ...
Setting up libhttp-cookies-perl (6.01-1) ...
Setting up gettext (0.19.8.1-1) ...
Setting up libx11-6:armhf (2:1.6.3-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libxpm4:armhf (1:3.5.11-1+b1) ...
Setting up po-debconf (1.0.19) ...
Setting up libgd3:armhf (2.2.1-1) ...
Setting up pdl (1:2.016-4) ...
Setting up dh-autoreconf (12) ...
Setting up liblwp-protocol-https-perl (6.06-2) ...
Setting up libwww-perl (6.15-1) ...
Setting up debhelper (9.20160709) ...
Setting up sbuild-build-depends-libtfbs-perl-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.019-1) ...
Processing triggers for libc-bin (2.23-1+rpi1) ...
Processing triggers for ca-certificates (20160104) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.7 g++-5_5.4.0-4 gcc-5_5.4.0-4 libc6-dev_2.23-1+rpi1 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.3~pre2 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-15 binutils_2.26.1-1 bioperl_1.6.924-5 bsdmainutils_9.0.10 bsdutils_1:2.28-5 build-essential_11.7 bzip2_1.0.6-8 ca-certificates_20160104 console-setup_1.146 console-setup-linux_1.146 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-3 cpp-5_5.4.0-4 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160709 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.019-1 diffutils_1:3.3-3 dmsetup_2:1.02.127-1 dpkg_1.18.7 dpkg-dev_1.18.7 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1 file_1:5.28-2 findutils_4.6.0+git+20160517-5 fontconfig-config_2.11.0-6.4 fonts-dejavu-core_2.36-1 fuse2fs_1.43.1-1 g++_4:5.3.1-3 g++-5_5.4.0-4 gcc_4:5.3.1-3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5_5.4.0-4 gcc-5-base_5.4.0-4 gcc-6-base_6.1.1-1+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 ifupdown_0.8.13 init_1.36 init-system-helpers_1.36 initscripts_2.88dsf-59.7 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 iproute2_4.3.0-1 kbd_2.0.3-2 keyboard-configuration_1.146 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10.95-4 libapt-pkg5.0_1.3~pre2 libarchive-zip-perl_1.57-1 libasan2_5.4.0-4 libatm1_1:2.5.1-1.6 libatomic1_6.1.1-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.5.2-1+rpi1 libaudit1_1:2.5.2-1+rpi1 libbio-perl-perl_1.6.924-5 libblkid1_2.28-5 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-1+rpi1 libc-dev-bin_2.23-1+rpi1 libc6_2.23-1+rpi1 libc6-dev_2.23-1+rpi1 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-1+rpi1 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdata-stag-perl_0.14-2 libdb5.3_5.3.28-11 libdbi-perl_1.636-1 libdbus-1-3_1.10.8-1 libdebconfclient0_0.213 libdevmapper1.02.1_2:1.02.127-1 libdpkg-perl_1.18.7 libdrm2_2.4.68-1 libencode-locale-perl_1.05-1 libexpat1_2.2.0-1 libfakeroot_1.21-1 libfdisk1_2.28-5 libffi6_3.2.1-4 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_0.019-1 libfontconfig1_2.11.0-6.4 libfreetype6_2.6.3-3+b1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-5-dev_5.4.0-4 libgcc1_1:6.1.1-1+rpi1 libgcrypt20_1.7.1-2 libgd3_2.2.1-1 libgdbm3_1.8.3-14 libgfortran3_6.1.1-1+rpi1 libglib2.0-0_2.48.1-2 libgmp10_2:6.1.1+dfsg-1 libgomp1_6.1.1-1+rpi1 libgpg-error0_1.23-1 libgsl2_2.1+dfsg-2 libhdf4-0-alt_4.2.12-1 libhtml-parser-perl_3.72-2 libhtml-tagset-perl_3.20-2 libhtml-tree-perl_5.03-2 libhttp-cookies-perl_6.01-1 libhttp-date-perl_6.02-1 libhttp-message-perl_6.11-1 libhttp-negotiate-perl_6.00-2 libicu55_55.1-7 libidn11_1.32-3.1 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.029-1 libio-string-perl_1.08-3 libisl15_0.17.1-1 libjbig0_2.1-3.1 libjpeg62-turbo_1:1.5.0-1 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 liblocale-gettext-perl_1.07-3 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.06-2 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.28-2 libmount1_2.28-5 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160319-2 libncursesw5_6.0+20160319-2 libnet-http-perl_6.09-1 libnet-ssleay-perl_1.74-1 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-2 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-6 libpng16-16_1.6.23-1 libprocps5_2:3.3.11-3 libproj9_4.9.2-3 libreadline6_6.3-8+b3 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28-5 libss2_1.43.1-1 libssl1.0.2_1.0.2h-1 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 libsystemd0_230-5 libterm-readkey-perl_2.33-1+b1 libtiff5_4.0.6-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-2 libtool_2.4.6-0.1 libubsan0_6.1.1-1+rpi1 libudev1_230-5 libunistring0_0.9.6+really0.9.3-0.1 liburi-perl_1.71-1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5 libwebp5_0.4.4-1.1 libwww-perl_6.15-1 libwww-robotrules-perl_6.01-1 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb1_1.11.1-1 libxdmcp6_1:1.1.2-1.1 libxml2_2.9.3+dfsg1-1.2 libxpm4_1:3.5.11-1+b1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160629+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.06-1 mawk_1.3.3-17 mount_2.28-5 multiarch-support_2.23-1+rpi1 ncurses-base_6.0+20160319-2 ncurses-bin_6.0+20160319-2 netbase_5.3 openssl_1.0.2h-1 passwd_1:4.2-3.1 patch_2.7.5-1 pdl_1:2.016-4 perl_5.22.2-2 perl-base_5.22.2-2 perl-modules-5.22_5.22.2-2 po-debconf_1.0.19 procps_2:3.3.11-3 proj-data_4.9.2-3 psmisc_22.21-2.1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libtfbs-perl-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_230-5 systemd-sysv_230-5 sysv-rc_2.88dsf-59.7 sysvinit-utils_2.88dsf-59.7 tar_1.29-1+rpi1 tzdata_2016f-1 ucf_3.0036 udev_230-5 util-linux_2.28-5 xkb-data_2.17-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun Jul 17 07:34:41 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./libtfbs-perl_0.7.0+dfsg-3.dsc
dpkg-source: info: extracting libtfbs-perl in libtfbs-perl-0.7.0+dfsg
dpkg-source: info: unpacking libtfbs-perl_0.7.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking libtfbs-perl_0.7.0+dfsg-3.debian.tar.xz
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying spelling-errors.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-c73b36f6-29ff-4fe2-b66c-8dbdebb1e10d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libtfbs-perl
dpkg-buildpackage: info: source version 0.7.0+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build libtfbs-perl-0.7.0+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_update_autotools_config -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
echo "n" | perl Makefile.PL INSTALLDIRS=vendor
-------------------------------------------------
WARNING
-------------------------------------------------
GD.pm does not seem to be installed.
GD is reqired to produce "sequence logos" from
information content matrices. If you need this
functionality, please visit
http://stein.cshl.org/WWW/software/GD/
for information on obtaining and installing GD.
-------------------------------------------------
Do you have write access to a MySQL database server? [n] Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for TFBS::Ext::pwmsearch
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for TFBS
Writing MYMETA.yml and MYMETA.json
/usr/bin/make OPTIMIZE="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" LD_RUN_PATH="" OTHERLDFLAGS="-Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
cp TFBS/PatternGen/MEME/Motif.pm blib/lib/TFBS/PatternGen/MEME/Motif.pm
cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm
cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm
cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm
cp TFBS/Matrix/ICM.pm blib/lib/TFBS/Matrix/ICM.pm
cp TFBS/Matrix/_Alignment.pm blib/lib/TFBS/Matrix/_Alignment.pm
cp TFBS/PatternGenI.pm blib/lib/TFBS/PatternGenI.pm
cp TFBS/SiteSet.pm blib/lib/TFBS/SiteSet.pm
cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm
cp TFBS/PatternGen/AnnSpec/Motif.pm blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm
cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm
cp TFBS/DB.pm blib/lib/TFBS/DB.pm
cp TFBS/PatternI.pm blib/lib/TFBS/PatternI.pm
cp TFBS/DB/LocalTRANSFAC.pm blib/lib/TFBS/DB/LocalTRANSFAC.pm
cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm
cp TFBS/PatternGen/SimplePFM.pm blib/lib/TFBS/PatternGen/SimplePFM.pm
cp TFBS/SitePairSet.pm blib/lib/TFBS/SitePairSet.pm
cp TFBS/Word.pm blib/lib/TFBS/Word.pm
cp TFBS/Tools/SetOperations.pm blib/lib/TFBS/Tools/SetOperations.pm
cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm
cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm
cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm
cp TFBS/Matrix/PWM.pm blib/lib/TFBS/Matrix/PWM.pm
cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm
cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm
cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm
cp TFBS/PatternGen/Elph.pm blib/lib/TFBS/PatternGen/Elph.pm
cp TFBS/PatternGen/Motif/Matrix.pm blib/lib/TFBS/PatternGen/Motif/Matrix.pm
cp TFBS/DB/JASPAR2.pm blib/lib/TFBS/DB/JASPAR2.pm
cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm
cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm
cp TFBS/PatternGen/Gibbs/Motif.pm blib/lib/TFBS/PatternGen/Gibbs/Motif.pm
cp TFBS/PatternGen/Gibbs.pm blib/lib/TFBS/PatternGen/Gibbs.pm
cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm
cp TFBS/PatternGen/MEME.pm blib/lib/TFBS/PatternGen/MEME.pm
cp TFBS/PatternGen/Elph/Motif.pm blib/lib/TFBS/PatternGen/Elph/Motif.pm
cp TFBS/_Iterator.pm blib/lib/TFBS/_Iterator.pm
cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm
cp TFBS/README.md blib/lib/TFBS/README.md
cp TFBS/PatternGen/YMF/Motif.pm blib/lib/TFBS/PatternGen/YMF/Motif.pm
cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm
cp TFBS/Site.pm blib/lib/TFBS/Site.pm
cp TFBS/Word/Consensus.pm blib/lib/TFBS/Word/Consensus.pm
cp TFBS/PatternGen/Motif/Word.pm blib/lib/TFBS/PatternGen/Motif/Word.pm
cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm
cp TFBS/_Iterator/_MatrixSetIterator.pm blib/lib/TFBS/_Iterator/_MatrixSetIterator.pm
make[3]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/Ext'
cp lib/pwm_search.h ../blib/lib/pwm_search.h
cp lib/pwm_searchPFF.c ../blib/lib/pwm_searchPFF.c
cp pwmsearch.pm ../blib/lib/TFBS/Ext/pwmsearch.pm
Running Mkbootstrap for TFBS::Ext::pwmsearch ()
chmod 644 "pwmsearch.bs"
"/usr/bin/perl" "/usr/share/perl/5.22.2/ExtUtils/xsubpp" -typemap "/usr/share/perl/5.22/ExtUtils/typemap" pwmsearch.xs > pwmsearch.xsc && mv pwmsearch.xsc pwmsearch.c
Please specify prototyping behavior for pwmsearch.xs (see perlxs manual)
arm-linux-gnueabihf-gcc -c -I. -I./lib -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.2\" -DXS_VERSION=\"0.2\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.22/CORE" pwmsearch.c
In file included from pwmsearch.xs:4:0:
./lib/pwm_searchPFF.c: In function 'do_search':
./lib/pwm_searchPFF.c:55:7: warning: implicit declaration of function 'announce' [-Wimplicit-function-declaration]
announce("+++\nEntering main.\n+++\n");
^
./lib/pwm_searchPFF.c:74:9: warning: implicit declaration of function 'get_matrix' [-Wimplicit-function-declaration]
if ( get_matrix(&args,pwm) )
^
./lib/pwm_searchPFF.c:90:14: warning: implicit declaration of function 'loop_on_seqs' [-Wimplicit-function-declaration]
else if ( loop_on_seqs(&args,pwm,fp,outfp) )
^
./lib/pwm_searchPFF.c: At top level:
./lib/pwm_searchPFF.c:159:1: warning: return type defaults to 'int' [-Wimplicit-int]
best_pull(pargs,pbase,pstrand,pscore)
^
./lib/pwm_searchPFF.c: In function 'do_seq':
./lib/pwm_searchPFF.c:229:18: warning: implicit declaration of function 'save_hit' [-Wimplicit-function-declaration]
if ( save_hit(base,0,forward_score,hits,&nhit) )
^
./lib/pwm_searchPFF.c:239:20: warning: implicit declaration of function 'output' [-Wimplicit-function-declaration]
else if ( output(pargs,seqid,base,seq,0,forward_score,outfp) )
^
./lib/pwm_searchPFF.c: At top level:
./lib/pwm_searchPFF.c:526:1: warning: return type defaults to 'int' [-Wimplicit-int]
get_sequence(fp,seq_id,sequence)
^
rm -f ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so
arm-linux-gnueabihf-gcc -shared -L/usr/local/lib -fstack-protector-strong pwmsearch.o -Wl,-z,relro -Wl,-z,now -o ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so \
-lm \
chmod 755 ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644
Manifying 1 pod document
make[3]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/Ext'
Manifying 34 pod documents
make[2]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
dh_auto_build -a
make -j1
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
make[2]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/Ext'
Running Mkbootstrap for TFBS::Ext::pwmsearch ()
chmod 644 "pwmsearch.bs"
Manifying 1 pod document
make[2]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/Ext'
Manifying 34 pod documents
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
prove --blib t/01_Matrix.t t/02_Search.t t/03_DB_FlatFileDir.t t/05_DB_JASPAR.t t/06_SimplePFM.t t/07_AnnSpec.t t/07_Elph.t t/07_Gibbs.t t/07_MEME.t t/08_DB_LocalTRANSFAC.t t/09_Word_Consensus.t t/10_Tools_SetOperations.t Ext/t/*.t
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/01_Matrix.t ............... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/02_Search.t ............... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/03_DB_FlatFileDir.t ....... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/05_DB_JASPAR.t ............ ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/06_SimplePFM.t ............ ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/07_AnnSpec.t .............. ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/07_Elph.t ................. ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/07_Gibbs.t ................ ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/07_MEME.t ................. ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/08_DB_LocalTRANSFAC.t ..... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/09_Word_Consensus.t ....... ok
Possible precedence issue with control flow operator at /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/blib/lib/TFBS/Matrix/_Alignment.pm line 152, <DATA> line 207.
t/10_Tools_SetOperations.t .. ok
Ext/t/pwmsearch.t ........... ok
All tests successful.
Files=13, Tests=45, 30 wallclock secs ( 0.37 usr 0.09 sys + 28.54 cusr 1.12 csys = 30.12 CPU)
Result: PASS
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<BUILDDIR>>/libtfbs-perl-0.7.0\+dfsg/debian/libtfbs-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
make[2]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/Ext'
Manifying 1 pod document
make[2]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/Ext'
Manifying 34 pod documents
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/auto/TFBS/Ext/pwmsearch/pwmsearch.so
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/pwm_search.h
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/pwm_searchPFF.c
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/Matrix.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGenI.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/SiteSet.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/DB.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternI.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/SitePairSet.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/Word.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/SitePair.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/ConservationProfile.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/TFFM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/_Iterator.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/MatrixSet.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/README.md
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/Site.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/AnnSpec.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/SimplePFM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/YMF.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/Elph.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/Gibbs.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/MEME.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/MEME/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/AnnSpec/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/Motif/Matrix.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/Motif/Word.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/Gibbs/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/Elph/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/PatternGen/YMF/Motif.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/DB/TRANSFAC.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/DB/JASPAR6.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/DB/LocalTRANSFAC.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/DB/JASPAR.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/DB/JASPAR5.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/DB/JASPAR2.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/DB/FlatFileDir.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/DB/JASPAR4.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/Matrix/ICM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/Matrix/_Alignment.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/Matrix/Alignment.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/Matrix/PWM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/Matrix/PFM.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/Tools/SetOperations.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/Run/ConservationProfileGenerator.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/Word/Consensus.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/_Iterator/_SiteSetIterator.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/_Iterator/_MatrixSetIterator.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/Ext/pwmsearch.pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::Ext::pwmsearch.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::FlatFileDir.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR2.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR4.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR5.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR6.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::LocalTRANSFAC.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::TRANSFAC.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::Alignment.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::ICM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PFM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PWM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::MatrixSet.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::SimplePFM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF::Motif.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternI.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::Site.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePair.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePairSet.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::SiteSet.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::TFFM.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word.3pm
Installing /<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word::Consensus.3pm
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
dh_installexamples
mkdir -p debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext
cp -a Ext/t debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
dh_installman -a
debian/rules override_dh_perl
make[1]: Entering directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
dh_perl
dh_pdl
make[1]: Leaving directory '/<<BUILDDIR>>/libtfbs-perl-0.7.0+dfsg'
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libtfbs-perl/usr/lib/arm-linux-gnueabihf/perl5/5.22/auto/TFBS/Ext/pwmsearch/pwmsearch.so was not linked against libm.so.6 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.0+dfsg-3_armhf.deb'.
dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.0+dfsg-3_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libtfbs-perl_0.7.0+dfsg-3_armhf.changes
dpkg-genchanges: warning: package libtfbs-perl-dbgsym listed in files list but not in control info
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build libtfbs-perl-0.7.0+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160722-0526
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libtfbs-perl_0.7.0+dfsg-3_armhf.changes:
----------------------------------------
Format: 1.8
Date: Sat, 16 Jul 2016 08:00:43 +0300
Source: libtfbs-perl
Binary: libtfbs-perl
Architecture: armhf
Version: 0.7.0+dfsg-3
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Tatiana Malygina <merlettaia@gmail.com>
Description:
libtfbs-perl - scanning DNA sequence with a position weight matrix
Changes:
libtfbs-perl (0.7.0+dfsg-3) unstable; urgency=medium
.
* Team upload.
* add tests (except smoke tests - since debian/tests/run-unit-tests does the
same thing as they do) from autopkgtest-pkg-perl to debian/tests/control.
For more details see this page (and link to default-tests-control file):
https://pkg-perl.alioth.debian.org/autopkgtest.html#implementation
Checksums-Sha1:
8050330dba333d4f6b0acb768fb58bbb9fd27df3 31226 libtfbs-perl-dbgsym_0.7.0+dfsg-3_armhf.deb
24c881212b3fdbca920c241c35f5cbb8a636a303 228154 libtfbs-perl_0.7.0+dfsg-3_armhf.deb
Checksums-Sha256:
bf0b6a6928d749f8d7cea83d7ccf6df518671c12e480afed2d064b1babfb8755 31226 libtfbs-perl-dbgsym_0.7.0+dfsg-3_armhf.deb
6596b036a60cc6154c4a80529e9ebb2c8e9fb3acb774b91a8d6a2e83582100c7 228154 libtfbs-perl_0.7.0+dfsg-3_armhf.deb
Files:
7112688bc3a0ddfaf1c2ad3372de1528 31226 debug extra libtfbs-perl-dbgsym_0.7.0+dfsg-3_armhf.deb
df2a3488c41244ef400eb0881a23485b 228154 perl optional libtfbs-perl_0.7.0+dfsg-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libtfbs-perl-dbgsym_0.7.0+dfsg-3_armhf.deb
------------------------------------------
new debian package, version 2.0.
size 31226 bytes: control archive=490 bytes.
430 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libtfbs-perl-dbgsym
Source: libtfbs-perl
Version: 0.7.0+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 44
Depends: libtfbs-perl (= 0.7.0+dfsg-3)
Section: debug
Priority: extra
Homepage: http://tfbs.genereg.net
Description: Debug symbols for libtfbs-perl
Auto-Built-Package: debug-symbols
Build-Ids: a8f1f7109cff0282c3bf8a8683d1abc5738b9bf5
drwxr-xr-x root/root 0 2016-07-22 05:26 ./
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/lib/debug/.build-id/a8/
-rw-r--r-- root/root 34284 2016-07-22 05:26 ./usr/lib/debug/.build-id/a8/f1f7109cff0282c3bf8a8683d1abc5738b9bf5.debug
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/share/
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-07-22 05:26 ./usr/share/doc/libtfbs-perl-dbgsym -> libtfbs-perl
libtfbs-perl_0.7.0+dfsg-3_armhf.deb
-----------------------------------
new debian package, version 2.0.
size 228154 bytes: control archive=4065 bytes.
1164 bytes, 22 lines control
9758 bytes, 110 lines md5sums
Package: libtfbs-perl
Version: 0.7.0+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 714
Depends: perl (>= 5.22.2-2), perlapi-5.22.2, pdl (>= 1:2.016-4), pdlapi-12, libc6 (>= 2.4), bioperl, libwww-perl, libdbi-perl
Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl
Section: perl
Priority: optional
Homepage: http://tfbs.genereg.net
Description: scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.
.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136".
drwxr-xr-x root/root 0 2016-07-22 05:26 ./
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/
drwxr-xr-x root/root 0 2016-07-22 05:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/
-rw-r--r-- root/root 4598 2015-10-29 19:42 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/ConservationProfile.pm
-rw-r--r-- root/root 326 2015-10-29 19:42 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/TFBS/DB.pm
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 4028
Build-Time: 85
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 518
Job: libtfbs-perl_0.7.0+dfsg-3
Machine Architecture: armhf
Package: libtfbs-perl
Package-Time: 645
Source-Version: 0.7.0+dfsg-3
Space: 4028
Status: successful
Version: 0.7.0+dfsg-3
--------------------------------------------------------------------------------
Finished at 20160722-0526
Build needed 00:10:45, 4028k disc space