libssw →
1.1-14 →
armhf → 2023-09-26 09:40:23
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| libssw 1.1-14 (armhf) Tue, 26 Sep 2023 07:31:32 +0000 |
+==============================================================================+
Package: libssw
Version: 1.1-14
Source Version: 1.1-14
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-787c0b02-ac21-4153-844c-9acd85cd4620' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.6 MB]
Fetched 28.8 MB in 31s (920 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libssw' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libssw.git
Please use:
git clone https://salsa.debian.org/med-team/libssw.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 12.4 MB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main libssw 1.1-14 (dsc) [2369 B]
Get:2 http://172.17.4.1/private trixie-staging/main libssw 1.1-14 (tar) [12.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main libssw 1.1-14 (diff) [54.2 kB]
Fetched 12.4 MB in 2s (5096 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libssw-f7AvUc/libssw-1.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libssw-f7AvUc' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Qc73om/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Qc73om/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Qc73om/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Qc73om/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Qc73om/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Qc73om/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Qc73om/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Qc73om/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2595 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 16 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Qc73om/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (23.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11775 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), debhelper-compat (= 13), default-jdk-headless, javahelper, help2man, zlib1g-dev, libsimde-dev, maven-repo-helper
Filtered Build-Depends: debhelper (>= 12~), debhelper-compat (= 13), default-jdk-headless, javahelper, help2man, zlib1g-dev, libsimde-dev, maven-repo-helper
dpkg-deb: building package 'sbuild-build-depends-libssw-dummy' in '/<<BUILDDIR>>/resolver-Qc73om/apt_archive/sbuild-build-depends-libssw-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libssw-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Qc73om/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Qc73om/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Qc73om/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Qc73om/apt_archive ./ Sources [565 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Qc73om/apt_archive ./ Packages [634 B]
Fetched 2532 B in 1s (3420 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libssw build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binfmt-support bsdextrautils
ca-certificates ca-certificates-java dctrl-tools debhelper
default-jdk-headless default-jre-headless devscripts dh-autoreconf
dh-strip-nondeterminism dwz fastjar file fontconfig-config fonts-dejavu-core
fonts-dejavu-mono gettext gettext-base groff-base help2man intltool-debian
jarwrapper java-common javahelper libarchive-zip-perl libasound2
libasound2-data libavahi-client3 libavahi-common-data libavahi-common3
libb-hooks-op-check-perl libbrotli1 libclass-method-modifiers-perl
libclass-xsaccessor-perl libclone-perl libcups2 libdbus-1-3
libdebhelper-perl libdevel-callchecker-perl libdynaloader-functions-perl
libelf1 libencode-locale-perl libexpat1 libfile-dirlist-perl
libfile-homedir-perl libfile-listing-perl libfile-stripnondeterminism-perl
libfile-touch-perl libfile-which-perl libfontconfig1 libfreetype6
libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl
libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu72 libimport-into-perl
libio-html-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl
libjpeg62-turbo liblcms2-2 liblocale-gettext-perl liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic-mgc libmagic1 libmodule-runtime-perl
libmoo-perl libnet-http-perl libnet-ssleay-perl libnspr4 libnss3
libparams-classify-perl libpcsclite1 libpipeline1 libpng16-16
libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib
librole-tiny-perl libsimde-dev libssl3 libsub-override-perl
libsub-quote-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0
liburi-perl libwww-perl libwww-robotrules-perl libxml2 m4 man-db
maven-repo-helper media-types openjdk-17-jdk-headless
openjdk-17-jre-headless openssl patchutils perl-openssl-defaults po-debconf
python3 python3-minimal python3.11 python3.11-minimal wdiff zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make default-jre
adequate at autopkgtest bls-standalone bsd-mailx | mailx
check-all-the-things cvs-buildpackage diffoscope disorderfs dose-extra duck
elpa-devscripts faketime gnuplot how-can-i-help libauthen-sasl-perl
libdbd-pg-perl libfile-desktopentry-perl libterm-size-perl libyaml-syck-perl
mmdebstrap mozilla-devscripts mutt piuparts postgresql-client pristine-lfs
quilt ratt reprotest ssh-client svn-buildpackage w3m gettext-doc
libasprintf-dev libgettextpo-dev groff libasound2-plugins alsa-utils
cups-common low-memory-monitor libdata-dump-perl liblcms2-utils
libcrypt-ssleay-perl libscalar-number-perl pcscd libtool-doc gfortran
| fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl
libregexp-ipv6-perl libauthen-ntlm-perl m4-doc apparmor less www-browser
maven-debian-helper openjdk-17-demo openjdk-17-source libnss-mdns
fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho
fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic libmail-box-perl
python3-doc python3-tk python3-venv python3.11-venv python3.11-doc wdiff-doc
Recommended packages:
dput | dupload libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl
libjson-perl liblist-compare-perl libstring-shellquote-perl licensecheck
lintian python3-apt python3-debian python3-magic python3-requests
python3-unidiff python3-xdg strace unzip wget | curl debian-keyring equivs
libsoap-lite-perl pristine-tar curl | wget | lynx alsa-ucm-conf
alsa-topology-conf dbus libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs libhtml-format-perl
libio-compress-brotli-perl libnamespace-clean-perl libxstring-perl
libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl
libmailtools-perl libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev binfmt-support bsdextrautils
ca-certificates ca-certificates-java dctrl-tools debhelper
default-jdk-headless default-jre-headless devscripts dh-autoreconf
dh-strip-nondeterminism dwz fastjar file fontconfig-config fonts-dejavu-core
fonts-dejavu-mono gettext gettext-base groff-base help2man intltool-debian
jarwrapper java-common javahelper libarchive-zip-perl libasound2
libasound2-data libavahi-client3 libavahi-common-data libavahi-common3
libb-hooks-op-check-perl libbrotli1 libclass-method-modifiers-perl
libclass-xsaccessor-perl libclone-perl libcups2 libdbus-1-3
libdebhelper-perl libdevel-callchecker-perl libdynaloader-functions-perl
libelf1 libencode-locale-perl libexpat1 libfile-dirlist-perl
libfile-homedir-perl libfile-listing-perl libfile-stripnondeterminism-perl
libfile-touch-perl libfile-which-perl libfontconfig1 libfreetype6
libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl
libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu72 libimport-into-perl
libio-html-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl
libjpeg62-turbo liblcms2-2 liblocale-gettext-perl liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic-mgc libmagic1 libmodule-runtime-perl
libmoo-perl libnet-http-perl libnet-ssleay-perl libnspr4 libnss3
libparams-classify-perl libpcsclite1 libpipeline1 libpng16-16
libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib
librole-tiny-perl libsimde-dev libsub-override-perl libsub-quote-perl
libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl
libwww-perl libwww-robotrules-perl libxml2 m4 man-db maven-repo-helper
media-types openjdk-17-jdk-headless openjdk-17-jre-headless openssl
patchutils perl-openssl-defaults po-debconf python3 python3-minimal
python3.11 python3.11-minimal sbuild-build-depends-libssw-dummy wdiff
zlib1g-dev
The following packages will be upgraded:
libssl3
1 upgraded, 121 newly installed, 0 to remove and 15 not upgraded.
Need to get 152 MB of archives.
After this operation, 387 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Qc73om/apt_archive ./ sbuild-build-depends-libssw-dummy 0.invalid.0 [920 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf liblocale-gettext-perl armhf 1.07-6 [14.8 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf binfmt-support armhf 2.2.2-2 [52.3 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libssl3 armhf 3.0.11-1 [1620 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.5-3 [800 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.5-3 [1676 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.4-5 [26.2 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.5-3 [1675 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.5-3 [582 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.4-5 [9200 B]
Get:14 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.4-5 [26.2 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-2 [1033 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-1 [80.5 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-3 [1342 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.11-1 [1367 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-12 [156 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf ca-certificates-java all 20230710 [11.8 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.6 [81.9 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-12 [1201 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.6 [952 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf java-common all 0.74 [6388 B]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libavahi-common-data armhf 0.8-11 [110 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libavahi-common3 armhf 0.8-11 [39.0 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libdbus-1-3 armhf 1.14.10-1 [177 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libavahi-client3 armhf 0.8-11 [41.6 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libcups2 armhf 2.4.2-6 [205 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf liblcms2-2 armhf 2.14-2 [124 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-1 [258 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libnspr4 armhf 2:4.35-1.1 [85.2 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libnss3 armhf 2:3.92-1 [1105 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libasound2-data all 1.2.9-2 [20.5 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libasound2 armhf 1.2.9-2 [304 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.74.6-1 [1203 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libpcsclite1 armhf 2.0.0-1 [47.2 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf openjdk-17-jre-headless armhf 17.0.8+7-1~deb12u1+rpi1 [40.7 MB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf default-jre-headless armhf 2:1.17-74 [2932 B]
Get:72 http://172.17.4.1/private trixie-staging/main armhf openjdk-17-jdk-headless armhf 17.0.8+7-1~deb12u1+rpi1 [71.9 MB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf default-jdk-headless armhf 2:1.17-74 [1108 B]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libfile-dirlist-perl all 0.05-3 [7600 B]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libfile-homedir-perl all 1.006-2 [42.4 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libfile-touch-perl all 0.12-2 [8816 B]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libio-pty-perl armhf 1:1.17-1 [34.7 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libipc-run-perl all 20220807.0-1 [104 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libclass-xsaccessor-perl armhf 1.19-4+b1 [35.5 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libimport-into-perl all 1.002005-2 [11.3 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libsub-quote-perl all 2.006008-1 [21.8 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libmoo-perl all 2.005005-1 [58.0 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libfile-listing-perl all 6.15-1 [12.6 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libhtml-tagset-perl all 3.20-6 [11.7 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libhtml-parser-perl armhf 3.81-1 [97.2 kB]
Ign:97 http://172.17.4.1/private trixie-staging/main armhf libhtml-parser-perl armhf 3.81-1
Get:98 http://172.17.4.1/private trixie-staging/main armhf libhtml-tree-perl all 5.07-3 [211 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.44-2 [81.8 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf perl-openssl-defaults armhf 7+b1 [7916 B]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libnet-ssleay-perl armhf 1.92-2+b2 [297 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libio-socket-ssl-perl all 2.083-1 [218 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libnet-http-perl all 6.23-1 [23.9 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf liblwp-protocol-https-perl all 6.11-1 [10.5 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libwww-perl all 6.72-1 [187 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf patchutils armhf 0.4.2-1 [68.7 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf wdiff armhf 1.2.2-6 [118 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf devscripts all 2.23.6 [1066 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf fastjar armhf 2:0.98-7 [42.7 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf help2man armhf 1.49.3 [198 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf jarwrapper all 0.79 [10.1 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf javahelper all 0.79 [84.6 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libsimde-dev all 0.7.6-1 [384 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf maven-repo-helper all 1.11 [142 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libhtml-parser-perl armhf 3.81-1 [97.2 kB]
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Unpacking libhttp-date-perl (6.05-2) ...
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Unpacking liburi-perl (5.21-1) ...
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Unpacking libhtml-parser-perl:armhf (3.81-1) ...
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Unpacking libclone-perl:armhf (0.46-1) ...
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Unpacking liblwp-mediatypes-perl (6.04-2) ...
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Unpacking libhttp-message-perl (6.44-2) ...
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Unpacking libhttp-cookies-perl (6.10-1) ...
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Selecting previously unselected package libnet-ssleay-perl:armhf.
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Unpacking libnet-ssleay-perl:armhf (1.92-2+b2) ...
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Unpacking libio-socket-ssl-perl (2.083-1) ...
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Unpacking libnet-http-perl (6.23-1) ...
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Unpacking libwww-robotrules-perl (6.02-1) ...
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Unpacking patchutils (0.4.2-1) ...
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Unpacking wdiff (1.2.2-6) ...
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Unpacking devscripts (2.23.6) ...
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Unpacking fastjar (2:0.98-7) ...
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Unpacking help2man (1.49.3) ...
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Unpacking sbuild-build-depends-libssw-dummy (0.invalid.0) ...
Setting up media-types (10.1.0) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up fastjar (2:0.98-7) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libsimde-dev (0.7.6-1) ...
Setting up liblcms2-2:armhf (2.14-2) ...
Setting up wdiff (1.2.2-6) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up bsdextrautils (2.39.2-1) ...
Setting up java-common (0.74) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libclass-method-modifiers-perl (2.15-1) ...
Setting up libio-pty-perl (1:1.17-1) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libclone-perl:armhf (0.46-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.74.6-1) ...
No schema files found: doing nothing.
Setting up libhtml-tagset-perl (3.20-6) ...
Setting up libpython3.11-stdlib:armhf (3.11.5-3) ...
Setting up libdebhelper-perl (13.11.6) ...
Setting up libbrotli1:armhf (1.0.9-2+b3) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up perl-openssl-defaults:armhf (7+b1) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-4) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up file (1:5.45-2) ...
Setting up libasound2-data (1.2.9-2) ...
Setting up patchutils (0.4.2-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
Setting up libnspr4:armhf (2:4.35-1.1) ...
Setting up libavahi-common-data:armhf (0.8-11) ...
Setting up libdbus-1-3:armhf (1.14.10-1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16:armhf (1.6.40-1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up autopoint (0.21-13) ...
Setting up binfmt-support (2.2.2-2) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libipc-run-perl (20220807.0-1) ...
Setting up libpcsclite1:armhf (2.0.0-1) ...
Setting up autoconf (2.71-3) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-3) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libasound2:armhf (1.2.9-2) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libsub-quote-perl (2.006008-1) ...
Setting up libclass-xsaccessor-perl (1.19-4+b1) ...
Setting up libfile-dirlist-perl (0.05-3) ...
Setting up libfile-homedir-perl (1.006-2) ...
Setting up openssl (3.0.11-1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up liburi-perl (5.21-1) ...
Setting up liblocale-gettext-perl (1.07-6) ...
Setting up libfile-touch-perl (0.12-2) ...
Setting up dctrl-tools (2.24-3) ...
Setting up libpython3-stdlib:armhf (3.11.4-5) ...
Setting up libnet-ssleay-perl:armhf (1.92-2+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up python3.11 (3.11.5-3) ...
Setting up libhttp-date-perl (6.05-2) ...
Setting up gettext (0.21-12) ...
Setting up libfile-listing-perl (6.15-1) ...
Setting up jarwrapper (0.79) ...
Setting up libtool (2.4.7-7) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libavahi-common3:armhf (0.8-11) ...
Setting up libnet-http-perl (6.23-1) ...
Setting up python3 (3.11.4-5) ...
Setting up libnss3:armhf (2:3.92-1) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up help2man (1.49.3) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-2) ...
Setting up libhtml-parser-perl:armhf (3.81-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up ca-certificates-java (20230710) ...
No JRE found. Skipping Java certificates setup.
Setting up libavahi-client3:armhf (0.8-11) ...
Setting up libio-socket-ssl-perl (2.083-1) ...
Setting up libhttp-message-perl (6.44-2) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up libhttp-cookies-perl (6.10-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up man-db (2.11.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libcups2:armhf (2.4.2-6) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up debhelper (13.11.6) ...
Setting up liblwp-protocol-https-perl (6.11-1) ...
Setting up libwww-perl (6.72-1) ...
Setting up devscripts (2.23.6) ...
Setting up javahelper (0.79) ...
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up openjdk-17-jre-headless:armhf (17.0.8+7-1~deb12u1+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Processing triggers for ca-certificates-java (20230710) ...
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
Adding debian:ANF_Secure_Server_Root_CA.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Certainly_Root_E1.pem
Adding debian:Certainly_Root_R1.pem
Adding debian:Certigna.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:Certum_EC-384_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Certum_Trusted_Root_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem
Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GLOBALTRUST_2020.pem
Adding debian:GTS_Root_R1.pem
Adding debian:GTS_Root_R2.pem
Adding debian:GTS_Root_R3.pem
Adding debian:GTS_Root_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:GlobalSign_Root_E46.pem
Adding debian:GlobalSign_Root_R46.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:HiPKI_Root_CA_-_G1.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:ISRG_Root_X2.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
Adding debian:NAVER_Global_Root_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_ECC_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_RootCA3.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Telia_Root_CA_v2.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:Trustwave_Global_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
Adding debian:TunTrust_Root_CA.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:certSIGN_Root_CA_G2.pem
Adding debian:e-Szigno_Root_CA_2017.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:emSign_Root_CA_-_G1.pem
Adding debian:vTrus_ECC_Root_CA.pem
Adding debian:vTrus_Root_CA.pem
done.
Setting up default-jre-headless (2:1.17-74) ...
Setting up maven-repo-helper (1.11) ...
Setting up openjdk-17-jdk-headless:armhf (17.0.8+7-1~deb12u1+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jdk-headless (2:1.17-74) ...
Setting up sbuild-build-depends-libssw-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
Processing triggers for ca-certificates-java (20230710) ...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi2 dpkg-dev_1.21.22+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-9+rpi1+deb12u1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.1.38-1+rpi1
Package versions: adduser_3.137 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binfmt-support_2.2.2-2 binutils_2.40-2+rpi2 binutils-arm-linux-gnueabihf_2.40-2+rpi2 binutils-common_2.40-2+rpi2 bsdextrautils_2.39.2-1 bsdutils_1:2.39.2-1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20230311 ca-certificates-java_20230710 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.6 debianutils_5.13 default-jdk-headless_2:1.17-74 default-jre-headless_2:1.17-74 devscripts_2.23.6 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.22+rpi1 dpkg-dev_1.21.22+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 fastjar_2:0.98-7 file_1:5.45-2 findutils_4.9.0-4 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:12.2.0-3+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-3+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-12 gettext-base_0.21-12 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.23.0-2 gzip_1.12-1 help2man_1.49.3 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 jarwrapper_0.79 java-common_0.74 javahelper_0.79 krb5-locales_1.20.1-3 libacl1_2.3.1-3 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libasound2_1.2.9-2 libasound2-data_1.2.9-2 libassuan0_2.5.6-1 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libavahi-client3_0.8-11 libavahi-common-data_0.8-11 libavahi-common3_0.8-11 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.40-2+rpi2 libblkid1_2.39.2-1 libbrotli1_1.0.9-2+b3 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-9+rpi1+deb12u1 libc-dev-bin_2.36-9+rpi1+deb12u1 libc6_2.36-9+rpi1+deb12u1 libc6-dev_2.36-9+rpi1+deb12u1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_12.2.0-14+rpi1 libclass-method-modifiers-perl_2.15-1 libclass-xsaccessor-perl_1.19-4+b1 libclone-perl_0.46-1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.40-2+rpi2 libctf0_2.40-2+rpi2 libcups2_2.4.2-6 libdb5.3_5.3.28+dfsg2-2 libdbus-1-3_1.14.10-1 libdebconfclient0_0.270 libdebhelper-perl_13.11.6 libdevel-callchecker-perl_0.008-2 libdpkg-perl_1.21.22+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-dirlist-perl_0.05-3 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-listing-perl_6.15-1 libfile-stripnondeterminism-perl_1.13.1-1 libfile-touch-perl_0.12-2 libfile-which-perl_1.27-2 libfontconfig1_2.14.2-6 libfreetype6_2.13.2+dfsg-1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.2-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libglib2.0-0_2.74.6-1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.47-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-3 libharfbuzz0b_8.0.1-1 libhogweed6_3.9.1-2 libhtml-parser-perl_3.81-1 libhtml-tagset-perl_3.20-6 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.10-1 libhttp-date-perl_6.05-2 libhttp-message-perl_6.44-2 libhttp-negotiate-perl_6.01-2 libicu72_72.1-3 libidn2-0_2.3.4-1 libimport-into-perl_1.002005-2 libio-html-perl_1.004-3 libio-pty-perl_1:1.17-1 libio-socket-ssl-perl_2.083-1 libipc-run-perl_20220807.0-1 libisl23_0.26-3 libjansson4_2.14-2 libjpeg62-turbo_1:2.1.5-2 libk5crypto3_1.20.1-3 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-3 libkrb5support0_1.20.1-3 libksba8_1.6.3-2 liblcms2-2_2.14-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblocale-gettext-perl_1.07-6 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.11-1 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmodule-runtime-perl_0.016-2 libmoo-perl_2.005005-1 libmount1_2.39.2-1 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4+20230625-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.92-2+b2 libnettle8_3.9.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnspr4_2:4.35-1.1 libnss3_2:3.92-1 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.0-4 libpam-cap_1:2.66-4 libpam-modules_1.5.2-7 libpam-modules-bin_1.5.2-7 libpam-runtime_1.5.2-7 libpam0g_1.5.2-7 libparams-classify-perl_0.015-2+b1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libpcsclite1_2.0.0-1 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpng16-16_1.6.40-1 libpython3-stdlib_3.11.4-5 libpython3.11-minimal_3.11.5-3 libpython3.11-stdlib_3.11.5-3 libreadline8_8.2-1.3 librole-tiny-perl_2.002004-1 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.4-1+b2 libsepol1_3.1-1 libsepol2_3.5-1 libsimde-dev_0.7.6-1 libsmartcols1_2.39.2-1 libsqlite3-0_3.43.1-1 libss2_1.47.0-2 libssl1.1_1.1.1o-1 libssl3_3.0.11-1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-override-perl_0.09-4 libsub-quote-perl_2.006008-1 libsystemd0_252.12-1~deb12u1+rpi1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtimedate-perl_2.3300-2 libtinfo6_6.4+20230625-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.12-1~deb12u1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 liburi-perl_5.21-1 libuuid1_2.39.2-1 libwww-perl_6.72-1 libwww-robotrules-perl_6.02-1 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.1-1 libzstd1_1.5.5+dfsg2-1 linux-libc-dev_6.1.38-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.11.2-3 maven-repo-helper_1.11 mawk_1.3.4.20230808-1 media-types_10.1.0 mount_2.39.2-1 nano_7.2-1 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 netbase_6.4 openjdk-17-jdk-headless_17.0.8+7-1~deb12u1+rpi1 openjdk-17-jre-headless_17.0.8+7-1~deb12u1+rpi1 openssl_3.0.11-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 patchutils_0.4.2-1 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-9 perl-openssl-defaults_7+b1 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python3_3.11.4-5 python3-minimal_3.11.4-5 python3.11_3.11.5-3 python3.11-minimal_3.11.5-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libssw-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.07-1 tar_1.34+dfsg-1.2 tzdata_2023c-10 usrmerge_37 util-linux_2.39.2-1 util-linux-extra_2.39.2-1 wdiff_1.2.2-6 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Sun Aug 13 18:52:04 2023 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libssw_1.1-14.dsc: no acceptable signature found
dpkg-source: info: extracting libssw in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libssw_1.1.orig.tar.gz
dpkg-source: info: unpacking libssw_1.1-14.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying build_all_libs.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying rename_tool.patch
dpkg-source: info: applying simde.patch
dpkg-source: info: applying malloc
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-787c0b02-ac21-4153-844c-9acd85cd4620
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libssw
dpkg-buildpackage: info: source version 1.1-14
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with javahelper --with jh_maven_repo_helper
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f debian/libssw*install debian/libssw*links debian/ssw-align.1
dh_auto_clean --sourcedirectory src
cd src && make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f ssw.o ssw_cpp.o ssw-align libssw.so.0 example_c example_cpp libsswjni.so *.jar ssw/Aligner.class ssw/Alignment.class *~ libssw.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
jh_clean
dh_clean
debian/rules binary-arch
dh binary-arch --with javahelper --with jh_maven_repo_helper
dh_update_autotools_config -a
dh_autoreconf -a
jh_linkjars -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build --sourcedirectory src -- default java
cd src && make -j4 "INSTALL=install --strip-program=true" default java
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -shared -rdynamic -Wl,-soname,libssw.so.0 -o libssw.so.0 ssw.c ssw.h ssw_cpp.h ssw_cpp.cpp -Wl,-z,relro -Wl,-z,now
cc -c -o ssw.o ssw.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
g++ -c -o ssw_cpp.o ssw_cpp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
javac ssw/Aligner.java
javac ssw/Alignment.java
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I"/include" -I"/include/linux" -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -fPIC -shared -rdynamic -o libsswjni.so sswjni.c ssw.c -Wl,-z,relro -Wl,-z,now
jar cvf ssw.jar ssw/Aligner.class ssw/Alignment.class
added manifest
adding: ssw/Aligner.class(in = 2486) (out= 1525)(deflated 38%)
adding: ssw/Alignment.class(in = 1029) (out= 602)(deflated 41%)
ar rcs libssw.a ssw.o ssw_cpp.o
cc -o example_c ssw.o example.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -lm -lz -Wl,-z,relro -Wl,-z,now
g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -lm -lz -Wl,-z,relro -Wl,-z,now
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -o ssw-align main.c kseq.h -L. -lssw -lm -lz -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
LD_PRELOAD="$LD_PRELOAD /<<PKGBUILDDIR>>/src/libssw.so" src/ssw-align -c demo/ref.fa demo/1k.fa
ERROR: ld.so: object '/<<PKGBUILDDIR>>/src/libssw.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
target_name: chr1
query_name: chr1
optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001
Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60
Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120
Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180
Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240
Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300
Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360
Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420
Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480
Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540
Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600
Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660
Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720
Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780
Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840
Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900
Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960
Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001
|||||||||||||||||||||||||||||||||||||||||
Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001
target_name: chr2
query_name: chr1
optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971
Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488
||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| |||
Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56
Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543
|||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**|
Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104
Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599
||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| ||
Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156
Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655
||**||| | ||| || |||| *||| ||*| *|||| |*||*||| ||
Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200
Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707
|||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |*
Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254
Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752
||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*|
Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312
Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806
||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*|
Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363
Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846
| *||*||||||| ||**| | |||||||| |*||| |||
Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417
Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898
||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**|||
Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475
Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949
| |*|| || |*||**| *| || |||**|||*|*|| |||***|*|**
Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526
Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004
*|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *|
Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581
Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063
||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**||
Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627
Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123
*|**|||*|***|||||| |**|*| || || || | ||*||*|*||
Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668
Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173
||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| ||||
Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723
Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221
|| || || |||| || || || |||*|||| |||| |*|| || ||| ||
Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774
Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278
|| || |*|*|*||*||||| | ||*|| || |||*|*|| | || ||
Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816
Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335
|**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||*
Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870
Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392
|*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| ||
Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913
Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450
*|| | ||*||| ||*|*||||||||| || *|||| | *|| *|||
Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954
Target: 4438451 GACACTTCTTTATTATTCAC 4438470
*||||| |*|||*|||||
Query: 955 --TACTTC-TAATTTTTCAC 971
target_name: chr3
query_name: chr1
optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998
Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026
|| |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |*
Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53
Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070
*|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |*
Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111
Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126
|||| ||*||| |*|||**||*| || |||*||**||||| |||| ||
Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157
Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180
|**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| |
Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207
Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233
*||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*||
Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263
Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280
| *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| |
Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318
Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334
*|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***|
Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370
Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386
*||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| |||||
Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426
Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446
||| |*||***||||||**||| || |||| ||*|*| | |*||||*| |
Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469
Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505
***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****||||
Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517
Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547
| |||| | |||| || *| || |||| |||| |*||*|||| *|*
Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571
Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596
*|**||| *||| |||**|*|| ||||*| *|||| |*|*||| |||||
Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625
Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636
||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| ||
Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683
Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690
|||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*||
Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735
Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748
*||*|*|||||| |||| |*| | ||| || |||||**| || *|
Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774
Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803
|*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*|||
Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827
Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861
|||| |*|*|**|*| || |||| ||| || || *|*| || |||| |
Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867
Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914
||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*|
Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916
Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971
|||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*|
Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964
Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002
*|||| |*|||||*||| || |*|||*||*||
Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998
target_name: chr4
query_name: chr1
optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001
Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050
|||||**|| ||*||*|| || | *|*| || ||||||| || || || |
Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50
Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104
||| || |||***||| |||| |||| |||| || ||| ||
Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89
Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159
|| |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| |
Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138
Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219
|| |||| ||||||| || |*|||||*||||*|*||
Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170
Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264
||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*|
Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226
Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312
||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**||
Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284
Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365
| | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*|
Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335
Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419
||*| *||*|||| |||||**|| ||||*|||*|**||||
Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378
Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471
*||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*|
Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434
Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525
| | |**|||| *||*||||||*|*||***||||| |***|||| ||||
Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484
Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575
*|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*||||
Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536
Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620
| *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*|||
Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591
Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669
|| *|||| | || |**|**|| ||*|**| |*||| ||||||*|**|
Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643
Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728
||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| ||||
Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691
Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776
|||||| ||***|| || ||| | *||||*||| |*||**||||**|| ||
Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747
Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836
|||*|*||||*|| |*|*|||| |||*||| ***|||||||| || ||
Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790
Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878
|||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*|
Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848
Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935
|||| || ||*|*|||*|| |*|||||| |||| |**|||||||*|||
Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894
Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993
|| | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*|
Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939
Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048
||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| |
Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986
Target: 48049 GAA---AT--AAAGTA 48059
||| || ||| ||
Query: 987 GAATGGATCCAAA-TA 1001
target_name: chr5
query_name: chr1
optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974
Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863
|||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*|||
Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64
Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911
||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| |
Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120
Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955
*|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| *
Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179
Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013
|| |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|*
Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226
Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063
| |*||**|*||||| *||||| *||||| || ||| |**||||| || *||||
Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282
Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109
*|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| ||||
Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335
Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147
|||*||| ||*|| | |||| ||| *||| *||||| |**|||
Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393
Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197
||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*|
Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448
Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229
| |||||| ||||*|| | || | ||| |*||*||| ||
Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507
Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270
|||****| |||| |*|*|***|||*| ||*|*| ||| ||
Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562
Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329
*||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*|
Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615
Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383
*||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*|||
Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673
Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421
| | || |||| ||||| |*|| |||| ||||*||| |||| ||
Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730
Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473
|| ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*|
Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778
Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531
||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 1518.114380 seconds
|| ||*|*||||*||
Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830
Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591
||*|*||||**||||*| || |*|| |||||**||*|| | |||
Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869
Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650
*||| || |||*| || *||**||| || ||| ||*|| | ||| |
Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906
Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706
|||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *||
Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957
Target: 9707 TGTTGATTGTTTC-CTTT 9723
|**|*||| |||| ||||
Query: 958 TTCTAATT-TTTCACTTT 974
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
sed 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' debian/libssw0.install.in > debian/libssw0.install
sed 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' debian/libssw-dev.install.in > debian/libssw-dev.install
sed -e 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' \
-e 's/@DEB_JAVA_PKG_VERSION@/1.1/g' debian/libssw-dev.links.in > debian/libssw-dev.links
sed 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' debian/libssw-java.install.in > debian/libssw-java.install
sed -e 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' \
-e 's/@DEB_JAVA_PKG_VERSION@/1.1/g' debian/libssw-java.links.in > debian/libssw-java.links
mv src/ssw.jar src/ssw-1.1.jar
dh_auto_install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
jh_installjavadoc -a
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
LD_LIBRARY_PATH=`pwd`/src help2man --version-string=' ' --help-option=' ' \
-I debian/extra-man-info.txt \
-N -n 'fast Smith-Waterman aligner' \
--no-discard-stderr src/ssw-align \
| fgrep -v ERROR > debian/ssw-align.1
dh_installman
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
jh_installlibs -a
jh_classpath -a
jh_manifest -a
jh_exec -a
jh_depends -a
mh_installpoms -a
mh_linkjars --skip-clean-poms -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below
dpkg-gensymbols: warning: debian/libssw0/DEBIAN/symbols doesn't match completely debian/libssw0.symbols
--- debian/libssw0.symbols (libssw0_1.1-14_armhf)
+++ dpkg-gensymbolsp79QA9 2023-09-26 09:39:47.788461822 +0000
@@ -22,6 +22,9 @@
_ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentE@Base 1.1
_ZNK20StripedSmithWaterman7Aligner5AlignEPKcS2_RKiRKNS_6FilterEPNS_9AlignmentE@Base 1.1
_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1
+ _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev@Base 1.1-14
+ _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev@Base 1.1-14
+ _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev@Base 1.1-14
align_destroy@Base 1.1
init_destroy@Base 1.1
mark_mismatch@Base 1.1
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ssw-align/usr/bin/ssw-align was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libssw-dev' in '../libssw-dev_1.1-14_armhf.deb'.
dpkg-deb: building package 'ssw-align-dbgsym' in '../ssw-align-dbgsym_1.1-14_armhf.deb'.
dpkg-deb: building package 'libssw-java-dbgsym' in '../libssw-java-dbgsym_1.1-14_armhf.deb'.
dpkg-deb: building package 'libssw0' in '../libssw0_1.1-14_armhf.deb'.
dpkg-deb: building package 'libssw0-dbgsym' in '../libssw0-dbgsym_1.1-14_armhf.deb'.
dpkg-deb: building package 'libssw-java' in '../libssw-java_1.1-14_armhf.deb'.
dpkg-deb: building package 'ssw-align' in '../ssw-align_1.1-14_armhf.deb'.
dpkg-genbuildinfo --build=any -O../libssw_1.1-14_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../libssw_1.1-14_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-09-26T09:40:08Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libssw_1.1-14_armhf.changes:
----------------------------
Format: 1.8
Date: Sun, 13 Aug 2023 20:51:28 +0200
Source: libssw
Binary: libssw-dev libssw-java libssw-java-dbgsym libssw0 libssw0-dbgsym ssw-align ssw-align-dbgsym
Architecture: armhf
Version: 1.1-14
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
libssw-dev - Development headers and static libraries for libssw
libssw-java - Java bindings for libssw
libssw0 - fast SIMD parallelized implementation of the Smith-Waterman algor
ssw-align - Smith-Waterman aligner based on libssw
Closes: 1037742 1042114
Changes:
libssw (1.1-14) unstable; urgency=medium
.
* d/libssw0.symbols: update for gcc-13.
Closes: #1037742, #1042114
* Standards-Version: 4.6.2 (routine-update)
Checksums-Sha1:
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e2ddf767c9bb9225d8cc783912486b181a81af23 17356 libssw-java_1.1-14_armhf.deb
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e45ba0da0d8a5692ac185146ac2c1aaa602cd49c 19284 libssw0_1.1-14_armhf.deb
75d2626f290dbc0e521363805069538c9c260c8e 10303 libssw_1.1-14_armhf.buildinfo
59b6870a812fcef6d54d3cd14bc5de0da33efbf4 56376 ssw-align-dbgsym_1.1-14_armhf.deb
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68eede7d5453f2c36e64d1c0cab88fac6c5a23fee19e8b06c9c9f9fd29710a6b 44712 libssw-java-dbgsym_1.1-14_armhf.deb
5b214ec4fd5e2d2c84b4de7ce48d141f45ee2f10384ad8aa97663d8ff3e1cb3b 17356 libssw-java_1.1-14_armhf.deb
9fc576a304ffadde1ef680e95fa565e019b9cab30acd0f4aef6b30b8feef9b7d 101640 libssw0-dbgsym_1.1-14_armhf.deb
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Files:
9077d5ed145cf96e9e9c0596cebb9902 22332 libdevel optional libssw-dev_1.1-14_armhf.deb
ce03edf5e258cde8f7bf9d9ec34e301d 44712 debug optional libssw-java-dbgsym_1.1-14_armhf.deb
61db8bcda9364eb2da585f764e8d7f4a 17356 java optional libssw-java_1.1-14_armhf.deb
d27038a2bd25fdf57adb2c533053edb5 101640 debug optional libssw0-dbgsym_1.1-14_armhf.deb
91f141c570e609465cfb0627a57008e9 19284 libs optional libssw0_1.1-14_armhf.deb
771f9f9ea175a786051449a2f71d6940 10303 science optional libssw_1.1-14_armhf.buildinfo
0ba24ba2e7be65c47978ca6f39323614 56376 debug optional ssw-align-dbgsym_1.1-14_armhf.deb
baeba0101840d27dc24f0c6bddd43f87 20676 science optional ssw-align_1.1-14_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libssw-dev_1.1-14_armhf.deb
---------------------------
new Debian package, version 2.0.
size 22332 bytes: control archive=832 bytes.
667 bytes, 17 lines control
327 bytes, 5 lines md5sums
Package: libssw-dev
Source: libssw
Version: 1.1-14
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 72
Depends: libssw0 (= 1.1-14)
Provides: libssw-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Description: Development headers and static libraries for libssw
This package provides development headers and static libraries for libssw,
a fast implementation of the Smith-Waterman algorithm using
Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
algorithm at the instruction level.
drwxr-xr-x root/root 0 2023-08-13 18:51 ./
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/include/
-rw-r--r-- root/root 8517 2023-08-13 18:51 ./usr/include/ssw.h
-rw-r--r-- root/root 8041 2016-08-19 19:30 ./usr/include/ssw_cpp.h
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 41696 2023-08-13 18:51 ./usr/lib/arm-linux-gnueabihf/libssw.a
lrwxrwxrwx root/root 0 2023-08-13 18:51 ./usr/lib/arm-linux-gnueabihf/libssw.so -> libssw.so.0
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/doc/libssw-dev/
-rw-r--r-- root/root 1384 2023-08-13 18:51 ./usr/share/doc/libssw-dev/changelog.Debian.gz
-rw-r--r-- root/root 1619 2023-08-13 18:51 ./usr/share/doc/libssw-dev/copyright
libssw-java-dbgsym_1.1-14_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 44712 bytes: control archive=536 bytes.
378 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libssw-java-dbgsym
Source: libssw
Version: 1.1-14
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 56
Depends: libssw-java (= 1.1-14)
Section: debug
Priority: optional
Description: debug symbols for libssw-java
Build-Ids: 12ba15c18eaf1a85032ceb3c783b387aba813989
drwxr-xr-x root/root 0 2023-08-13 18:51 ./
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/debug/.build-id/12/
-rw-r--r-- root/root 46476 2023-08-13 18:51 ./usr/lib/debug/.build-id/12/ba15c18eaf1a85032ceb3c783b387aba813989.debug
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-08-13 18:51 ./usr/share/doc/libssw-java-dbgsym -> libssw-java
libssw-java_1.1-14_armhf.deb
----------------------------
new Debian package, version 2.0.
size 17356 bytes: control archive=840 bytes.
578 bytes, 15 lines control
434 bytes, 6 lines md5sums
Package: libssw-java
Source: libssw
Version: 1.1-14
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 52
Depends: libc6 (>= 2.4)
Section: java
Priority: optional
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Description: Java bindings for libssw
This package provides JNI based Java bindings for libssw, a fast
implementation of the Smith-Waterman algorithm using Single-Instruction
Multiple-Data (SIMD) instructions to parallelize the algorithm at the
instruction level.
drwxr-xr-x root/root 0 2023-08-13 18:51 ./
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/jni/
-rw-r--r-- root/root 25860 2023-08-13 18:51 ./usr/lib/jni/libsswjni.so
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/doc/libssw-java/
-rw-r--r-- root/root 1384 2023-08-13 18:51 ./usr/share/doc/libssw-java/changelog.Debian.gz
-rw-r--r-- root/root 1619 2023-08-13 18:51 ./usr/share/doc/libssw-java/copyright
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/java/
-rw-r--r-- root/root 2696 2023-08-13 18:51 ./usr/share/java/ssw-1.1.jar
lrwxrwxrwx root/root 0 2023-08-13 18:51 ./usr/share/java/ssw.jar -> ssw-1.1.jar
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/maven-repo/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/maven-repo/ssw/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/maven-repo/ssw/ssw/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/maven-repo/ssw/ssw/1.0/
lrwxrwxrwx root/root 0 2023-08-13 18:51 ./usr/share/maven-repo/ssw/ssw/1.0/ssw-1.0.jar -> ../../../../java/ssw.jar
-rw-r--r-- root/root 535 2023-08-13 18:51 ./usr/share/maven-repo/ssw/ssw/1.0/ssw-1.0.pom
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/maven-repo/ssw/ssw/debian/
lrwxrwxrwx root/root 0 2023-08-13 18:51 ./usr/share/maven-repo/ssw/ssw/debian/ssw-debian.jar -> ../../../../java/ssw.jar
-rw-r--r-- root/root 538 2023-08-13 18:51 ./usr/share/maven-repo/ssw/ssw/debian/ssw-debian.pom
libssw0-dbgsym_1.1-14_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 101640 bytes: control archive=544 bytes.
384 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libssw0-dbgsym
Source: libssw
Version: 1.1-14
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 114
Depends: libssw0 (= 1.1-14)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libssw0
Build-Ids: 638333d62fd05b9a37804804f11b3665e3f67527
drwxr-xr-x root/root 0 2023-08-13 18:51 ./
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/debug/.build-id/63/
-rw-r--r-- root/root 105972 2023-08-13 18:51 ./usr/lib/debug/.build-id/63/8333d62fd05b9a37804804f11b3665e3f67527.debug
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-08-13 18:51 ./usr/share/doc/libssw0-dbgsym -> libssw0
libssw0_1.1-14_armhf.deb
------------------------
new Debian package, version 2.0.
size 19284 bytes: control archive=1572 bytes.
1097 bytes, 21 lines control
286 bytes, 4 lines md5sums
26 bytes, 1 lines shlibs
1763 bytes, 33 lines symbols
68 bytes, 2 lines triggers
Package: libssw0
Source: libssw
Version: 1.1-14
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 55
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 11), zlib1g
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Description: fast SIMD parallelized implementation of the Smith-Waterman algorithm
SSW is a fast implementation of the Smith-Waterman algorithm, which uses the
Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
algorithm at the instruction level. SSW library provides an API that can be
flexibly used by programs written in C, C++ and other languages. The library
can do protein and genome alignment directly.
Current version of this implementation is ~50 times faster than an ordinary
Smith-Waterman. It can return the Smith-Waterman score, alignment location
and traceback path (cigar) of the optimal alignment accurately; and return
the sub-optimal alignment score and location heuristically.
drwxr-xr-x root/root 0 2023-08-13 18:51 ./
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 38248 2023-08-13 18:51 ./usr/lib/arm-linux-gnueabihf/libssw.so.0
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/doc/libssw0/
-rw-r--r-- root/root 260 2023-02-12 10:40 ./usr/share/doc/libssw0/README.Debian
-rw-r--r-- root/root 1381 2023-08-13 18:51 ./usr/share/doc/libssw0/changelog.Debian.gz
-rw-r--r-- root/root 1619 2023-08-13 18:51 ./usr/share/doc/libssw0/copyright
ssw-align-dbgsym_1.1-14_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 56376 bytes: control archive=540 bytes.
372 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: ssw-align-dbgsym
Source: libssw
Version: 1.1-14
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 68
Depends: ssw-align (= 1.1-14)
Section: debug
Priority: optional
Description: debug symbols for ssw-align
Build-Ids: 571b84c4abb07576a76a788f27398083dd9af801
drwxr-xr-x root/root 0 2023-08-13 18:51 ./
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/lib/debug/.build-id/57/
-rw-r--r-- root/root 59292 2023-08-13 18:51 ./usr/lib/debug/.build-id/57/1b84c4abb07576a76a788f27398083dd9af801.debug
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-08-13 18:51 ./usr/share/doc/ssw-align-dbgsym -> ssw-align
ssw-align_1.1-14_armhf.deb
--------------------------
new Debian package, version 2.0.
size 20676 bytes: control archive=888 bytes.
806 bytes, 17 lines control
266 bytes, 4 lines md5sums
Package: ssw-align
Source: libssw
Version: 1.1-14
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 54
Depends: libc6 (>= 2.34), zlib1g (>= 1:1.1.4), libssw0 (= 1.1-14)
Section: science
Priority: optional
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Description: Smith-Waterman aligner based on libssw
This package provides a command-line aligner based on the libssw library,
a fast SIMD accelerated implementation of the Smith-Waterman algorithm.
The input files can be in FASTA or FASTQ format. Both target and query files
can contain multiple sequences. Each sequence in the query file will be
aligned with all sequences in the target file. Output is provided in SAM or
BLAST-like text format.
drwxr-xr-x root/root 0 2023-08-13 18:51 ./
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/bin/
-rwxr-xr-x root/root 38356 2023-08-13 18:51 ./usr/bin/ssw-align
lrwxrwxrwx root/root 0 2023-08-13 18:51 ./usr/bin/ssw_test -> ssw-align
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/doc/ssw-align/
-rw-r--r-- root/root 1385 2023-08-13 18:51 ./usr/share/doc/ssw-align/changelog.Debian.gz
-rw-r--r-- root/root 1619 2023-08-13 18:51 ./usr/share/doc/ssw-align/copyright
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/man/
drwxr-xr-x root/root 0 2023-08-13 18:51 ./usr/share/man/man1/
-rw-r--r-- root/root 933 2023-08-13 18:51 ./usr/share/man/man1/ssw-align.1.gz
lrwxrwxrwx root/root 0 2023-08-13 18:51 ./usr/share/man/man1/ssw_test.1.gz -> ssw-align.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 31356
Build-Time: 1727
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 5816
Job: libssw_1.1-14
Machine Architecture: armhf
Package: libssw
Package-Time: 7716
Source-Version: 1.1-14
Space: 31356
Status: successful
Version: 1.1-14
--------------------------------------------------------------------------------
Finished at 2023-09-26T09:40:08Z
Build needed 02:08:36, 31356k disc space