libssw →
1.1-11 →
armhf → 2020-08-15 05:42:18
sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on test2019
+==============================================================================+
| libssw 1.1-11 (armhf) Sat, 15 Aug 2020 05:10:21 +0000 |
+==============================================================================+
Package: libssw
Version: 1.1-11
Source Version: 1.1-11
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-597b56e1-fe33-4823-b93a-71fff8546ef8' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.8 MB in 32s (783 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libssw' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libssw.git
Please use:
git clone https://salsa.debian.org/med-team/libssw.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 12.4 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main libssw 1.1-11 (dsc) [2394 B]
Get:2 http://172.17.0.1/private bullseye-staging/main libssw 1.1-11 (tar) [12.3 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main libssw 1.1-11 (diff) [54.0 kB]
Fetched 12.4 MB in 6s (2080 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libssw-1lvcCS/libssw-1.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libssw-1lvcCS' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-3n8Mem/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-3n8Mem/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-3n8Mem/gpg/trustdb.gpg: trustdb created
gpg: key E70254B6505CF8F7: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key E70254B6505CF8F7: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key E70254B6505CF8F7: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2573 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-3n8Mem/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (29.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13865 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), debhelper-compat (= 13), default-jdk-headless, javahelper, help2man, zlib1g-dev, libsimde-dev, maven-repo-helper
Filtered Build-Depends: debhelper (>= 12~), debhelper-compat (= 13), default-jdk-headless, javahelper, help2man, zlib1g-dev, libsimde-dev, maven-repo-helper
dpkg-deb: building package 'sbuild-build-depends-libssw-dummy' in '/<<BUILDDIR>>/resolver-3n8Mem/apt_archive/sbuild-build-depends-libssw-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libssw-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ Sources [565 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ Packages [634 B]
Fetched 2532 B in 1s (2926 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-3n8Mem/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install libssw build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates
ca-certificates-java dctrl-tools debhelper default-jdk-headless
default-jre-headless devscripts dh-autoreconf dh-strip-nondeterminism dwz
file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
help2man intltool-debian java-common javahelper libarchive-zip-perl
libasound2 libasound2-data libavahi-client3 libavahi-common-data
libavahi-common3 libb-hooks-op-check-perl libbrotli1 libbsd0
libclass-method-modifiers-perl libcroco3 libcups2 libdbus-1-3
libdebhelper-perl libdevel-callchecker-perl libdynaloader-functions-perl
libelf1 libencode-locale-perl libexpat1 libfile-homedir-perl
libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl
libfontconfig1 libfreetype6 libglib2.0-0 libgssapi-krb5-2
libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
libhttp-negotiate-perl libicu67 libimport-into-perl libio-html-perl
libio-pty-perl libio-socket-ssl-perl libipc-run-perl libjpeg62-turbo
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2
liblocale-gettext-perl liblwp-mediatypes-perl liblwp-protocol-https-perl
libmagic-mgc libmagic1 libmodule-runtime-perl libmoo-perl libnet-http-perl
libnet-ssleay-perl libnspr4 libnss3 libparams-classify-perl libpcsclite1
libpipeline1 libpng16-16 libpython3-stdlib libpython3.8-minimal
libpython3.8-stdlib librole-tiny-perl libsigsegv2 libsimde-dev libssl1.1
libstrictures-perl libsub-override-perl libsub-quote-perl libtimedate-perl
libtinfo5 libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl
libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxext6 libxi6 libxml2 libxrender1 libxtst6 m4 man-db maven-repo-helper
mime-support netbase openjdk-11-jdk-headless openjdk-11-jre-headless openssl
patchutils perl-openssl-defaults po-debconf python3 python3-minimal
python3.8 python3.8-minimal ucf wdiff x11-common zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make default-jre
adequate autopkgtest bls-standalone bsd-mailx | mailx check-all-the-things
cvs-buildpackage devscripts-el diffoscope disorderfs dose-extra duck
faketime gnuplot how-can-i-help libauthen-sasl-perl libdbd-pg-perl
libfile-desktopentry-perl libnet-smtps-perl libterm-size-perl
libyaml-syck-perl mozilla-devscripts mutt piuparts postgresql-client quilt
ratt reprotest ssh-client svn-buildpackage w3m gettext-doc libasprintf-dev
libgettextpo-dev groff libasound2-plugins alsa-utils cups-common krb5-doc
krb5-user libdata-dump-perl liblcms2-utils libcrypt-ssleay-perl
libscalar-number-perl pcscd libbareword-filehandles-perl libindirect-perl
libmultidimensional-perl libtool-doc gfortran | fortran95-compiler gcj-jdk
libauthen-ntlm-perl m4-doc apparmor less www-browser maven-debian-helper
openjdk-11-demo openjdk-11-source libnss-mdns fonts-dejavu-extra
fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei
| fonts-wqy-zenhei fonts-indic libmail-box-perl python3-doc python3-tk
python3-venv python3.8-venv python3.8-doc binfmt-support wdiff-doc
Recommended packages:
at dput | dupload libdistro-info-perl libgit-wrapper-perl
libgitlab-api-v4-perl liblist-compare-perl libstring-shellquote-perl
licensecheck lintian pristine-tar python3-apt python3-debian python3-magic
python3-requests python3-unidiff python3-xdg strace unzip wget | curl
debian-keyring equivs libsoap-lite-perl curl | wget | lynx alsa-ucm-conf
alsa-topology-conf dbus libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs libhtml-format-perl libclone-perl
krb5-locales libclass-xsaccessor-perl libnamespace-clean-perl
libsub-name-perl libltdl-dev libdata-dump-perl libhtml-form-perl
libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates
ca-certificates-java dctrl-tools debhelper default-jdk-headless
default-jre-headless devscripts dh-autoreconf dh-strip-nondeterminism dwz
file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
help2man intltool-debian java-common javahelper libarchive-zip-perl
libasound2 libasound2-data libavahi-client3 libavahi-common-data
libavahi-common3 libb-hooks-op-check-perl libbrotli1 libbsd0
libclass-method-modifiers-perl libcroco3 libcups2 libdbus-1-3
libdebhelper-perl libdevel-callchecker-perl libdynaloader-functions-perl
libelf1 libencode-locale-perl libexpat1 libfile-homedir-perl
libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl
libfontconfig1 libfreetype6 libglib2.0-0 libgssapi-krb5-2
libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
libhttp-negotiate-perl libicu67 libimport-into-perl libio-html-perl
libio-pty-perl libio-socket-ssl-perl libipc-run-perl libjpeg62-turbo
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2
liblocale-gettext-perl liblwp-mediatypes-perl liblwp-protocol-https-perl
libmagic-mgc libmagic1 libmodule-runtime-perl libmoo-perl libnet-http-perl
libnet-ssleay-perl libnspr4 libnss3 libparams-classify-perl libpcsclite1
libpipeline1 libpng16-16 libpython3-stdlib libpython3.8-minimal
libpython3.8-stdlib librole-tiny-perl libsigsegv2 libsimde-dev libssl1.1
libstrictures-perl libsub-override-perl libsub-quote-perl libtimedate-perl
libtinfo5 libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl
libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxext6 libxi6 libxml2 libxrender1 libxtst6 m4 man-db maven-repo-helper
mime-support netbase openjdk-11-jdk-headless openjdk-11-jre-headless openssl
patchutils perl-openssl-defaults po-debconf python3 python3-minimal
python3.8 python3.8-minimal sbuild-build-depends-libssw-dummy ucf wdiff
x11-common zlib1g-dev
0 upgraded, 133 newly installed, 0 to remove and 0 not upgraded.
Need to get 253 MB/254 MB of archives.
After this operation, 464 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3n8Mem/apt_archive ./ sbuild-build-depends-libssw-dummy 0.invalid.0 [924 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf liblocale-gettext-perl armhf 1.07-4 [18.1 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.5-2 [752 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.5-2 [1628 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.5-2 [1677 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.5-2 [420 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf netbase all 6.1 [19.9 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-3 [801 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1g-1 [811 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20200601 [158 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf java-common all 0.72 [14.5 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common-data armhf 0.8-3+b2 [127 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common3 armhf 0.8-3+b2 [55.3 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libdbus-1-3 armhf 1.12.20-1+b3 [192 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libavahi-client3 armhf 0.8-3+b2 [58.0 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-10+b3 [62.0 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-10+b3 [112 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-10+b3 [318 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-10+b3 [135 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libcups2 armhf 2.3.3-2 [309 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-7 [258 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-3 [347 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libnspr4 armhf 2:4.27-1 [90.7 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libnss3 armhf 2:3.55-1 [1095 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libasound2-data all 1.2.2-2.3 [37.9 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libasound2 armhf 1.2.2-2.3 [295 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libpcsclite1 armhf 1.9.0-1 [56.7 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.10-3 [311 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.10-3 [704 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libxi6 armhf 2:1.7.10-1 [77.9 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libxtst6 armhf 2:1.2.3-1 [26.3 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf openjdk-11-jre-headless armhf 11.0.8+10-1 [33.1 MB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf default-jre-headless armhf 2:1.11-72+b4 [11.2 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates-java all 20190909 [15.7 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2 [187 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.180-1 [162 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.4-1 [1159 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-3 [8287 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2 [1007 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf openjdk-11-jdk-headless armhf 11.0.8+10-1 [184 MB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf default-jdk-headless armhf 2:1.11-72+b4 [1100 B]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libfile-homedir-perl all 1.004-1 [42.7 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libio-pty-perl armhf 1:1.12-1 [35.5 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libipc-run-perl all 20200505.0-1 [102 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libclass-method-modifiers-perl all 2.13-1 [19.2 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b3 [11.0 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libdynaloader-functions-perl all 0.003-1 [12.6 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b1 [15.7 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libparams-classify-perl armhf 0.015-1+b2 [24.4 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libimport-into-perl all 1.002005-1 [11.6 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf librole-tiny-perl all 2.001004-1 [20.8 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libstrictures-perl all 2.000006-1 [18.6 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libsub-quote-perl all 2.006006-1 [21.0 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libmoo-perl all 2.004000-1 [59.4 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libencode-locale-perl all 1.05-1 [13.7 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libtimedate-perl all 2.3300-1 [39.2 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libfile-listing-perl all 6.04-1 [10.3 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libhtml-tagset-perl all 3.20-4 [13.0 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf liburi-perl all 1.76-2 [90.2 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libhtml-parser-perl armhf 3.72-5 [101 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libhtml-tree-perl all 5.07-2 [213 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libio-html-perl all 1.001-1 [17.6 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libhttp-message-perl all 6.25-1 [79.2 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libhttp-cookies-perl all 6.08-1 [19.3 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf perl-openssl-defaults armhf 5 [7360 B]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libnet-ssleay-perl armhf 1.88-3 [301 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libio-socket-ssl-perl all 2.067-1 [212 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libnet-http-perl all 6.19-1 [24.8 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf liblwp-protocol-https-perl all 6.09-1 [12.0 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libwww-perl all 6.46-1 [192 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf patchutils armhf 0.4.2-1 [68.7 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf wdiff armhf 1.2.2-2 [120 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf devscripts armhf 2.20.4 [1060 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.16 [181 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf javahelper all 0.75 [96.9 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libsimde-dev all 0.5.0-1 [149 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf maven-repo-helper all 1.9.4 [142 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libsimde-dev (0.5.0-1) ...
Setting up liblcms2-2:armhf (2.9-4) ...
Setting up libfile-which-perl (1.23-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up libkeyutils1:armhf (1.6.1-2) ...
Setting up mime-support (3.64) ...
Setting up java-common (0.72) ...
Setting up libicu67:armhf (67.1-3) ...
Setting up libdynaloader-functions-perl (0.003-1) ...
Setting up libclass-method-modifiers-perl (2.13-1) ...
Setting up libio-pty-perl (1:1.12-1) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.64.4-1) ...
No schema files found: doing nothing.
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Setting up libdebhelper-perl (13.2) ...
Setting up libbrotli1:armhf (1.0.7-7) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up x11-common (1:7.7+20) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libtry-tiny-perl (0.30-1) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up perl-openssl-defaults:armhf (5) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up libencode-locale-perl (1.05-1) ...
Setting up file (1:5.38-5) ...
Setting up libkrb5support0:armhf (1.17-10+b3) ...
Setting up libasound2-data (1.2.2-2.3) ...
Setting up patchutils (0.4.2-1) ...
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Setting up libjpeg62-turbo:armhf (1:2.0.5-1.1) ...
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Setting up libnspr4:armhf (2:4.27-1) ...
Setting up libavahi-common-data:armhf (0.8-3+b2) ...
Setting up libdbus-1-3:armhf (1.12.20-1+b3) ...
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Setting up libpng16-16:armhf (1.6.37-2) ...
Setting up libio-html-perl (1.001-1) ...
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Setting up fonts-dejavu-core (2.37-2) ...
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Setting up libpcsclite1:armhf (1.9.0-1) ...
Setting up ucf (3.0043) ...
Setting up libk5crypto3:armhf (1.17-10+b3) ...
Setting up libtimedate-perl (2.3300-1) ...
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Setting up netbase (6.1) ...
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Setting up libkrb5-3:armhf (1.17-10+b3) ...
Setting up libpython3.8-stdlib:armhf (3.8.5-2) ...
Setting up python3.8 (3.8.5-2) ...
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Setting up openssl (1.1.1g-1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
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Setting up libelf1:armhf (0.180-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-5+b1) ...
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Setting up dctrl-tools (2.24-3) ...
Setting up libpython3-stdlib:armhf (3.8.2-3) ...
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Setting up wdiff (1.2.2-2) ...
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Setting up libxdmcp6:armhf (1:1.1.2-3) ...
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Setting up libtool (2.4.6-14) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up libavahi-common3:armhf (0.8-3+b2) ...
Setting up libnet-http-perl (6.19-1) ...
Setting up m4 (1.4.18-4) ...
Setting up python3 (3.8.2-3) ...
Setting up libnss3:armhf (2:3.55-1) ...
Setting up libdevel-callchecker-perl (0.008-1+b1) ...
Setting up help2man (1.47.16) ...
Setting up ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
126 added, 0 removed; done.
Setting up libfreetype6:armhf (2.10.2+dfsg-3) ...
Setting up libgssapi-krb5-2:armhf (1.17-10+b3) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up libhtml-parser-perl (3.72-5) ...
Setting up libx11-6:armhf (2:1.6.10-3) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up libavahi-client3:armhf (0.8-3+b2) ...
Setting up libio-socket-ssl-perl (2.067-1) ...
Setting up libhttp-message-perl (6.25-1) ...
Setting up automake (1:1.16.2-3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhttp-negotiate-perl (6.01-1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libhttp-cookies-perl (6.08-1) ...
Setting up libhtml-tree-perl (5.07-2) ...
Setting up libparams-classify-perl (0.015-1+b2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libcups2:armhf (2.3.3-2) ...
Setting up libxi6:armhf (2:1.7.10-1) ...
Setting up libimport-into-perl (1.002005-1) ...
Setting up libxtst6:armhf (2:1.2.3-1) ...
Setting up libmoo-perl (2.004000-1) ...
Setting up po-debconf (1.0.21) ...
Setting up liblwp-protocol-https-perl (6.09-1) ...
Setting up default-jre-headless (2:1.11-72+b4) ...
Setting up libwww-perl (6.46-1) ...
Setting up openjdk-11-jre-headless:armhf (11.0.8+10-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up debhelper (13.2) ...
Setting up maven-repo-helper (1.9.4) ...
Setting up openjdk-11-jdk-headless:armhf (11.0.8+10-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up dh-autoreconf (19) ...
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Setting up devscripts (2.20.4) ...
Setting up javahelper (0.75) ...
Setting up ca-certificates-java (20190909) ...
head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Certigna.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:EC-ACC.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GTS_Root_R1.pem
Adding debian:GTS_Root_R2.pem
Adding debian:GTS_Root_R3.pem
Adding debian:GTS_Root_R4.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:LuxTrust_Global_Root_2.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem. Message:
/etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem (No such file or directory)
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:emSign_Root_CA_-_G1.pem
done.
Setting up sbuild-build-depends-libssw-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-3+rpi1) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
done.
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ armhf (armv7l)
Toolchain package versions: binutils_2.35-1+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.1.0-6+rpi1 gcc-10_10.1.0-6+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.1.0-6+rpi1 libstdc++6_10.1.0-6+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-1+b1 aptitude-common_0.8.13-1 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-1+rpi1 binutils-arm-linux-gnueabihf_2.35-1+rpi1 binutils-common_2.35-1+rpi1 bsdextrautils_2.36-2 bsdutils_1:2.36-2 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 ca-certificates-java_20190909 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.1.0-6+rpi1 dash_0.5.10.2-7 dctrl-tools_2.24-3 debconf_1.5.74 debhelper_13.2 debianutils_4.9.1 default-jdk-headless_2:1.11-72+b4 default-jre-headless_2:1.11-72+b4 devscripts_2.20.4 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-2 file_1:5.38-5 findutils_4.7.0-1 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.1.0-1+rpi1 g++-10_10.1.0-6+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.1.0-6+rpi1 gcc-10-base_10.1.0-6+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.16 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 java-common_0.72 javahelper_0.75 libacl1_2.2.53-8 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan6_10.1.0-6+rpi1 libasound2_1.2.2-2.3 libasound2-data_1.2.2-2.3 libassuan0_2.5.3-7.1 libatomic1_10.1.0-6+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libavahi-client3_0.8-3+b2 libavahi-common-data_0.8-3+b2 libavahi-common3_0.8-3+b2 libb-hooks-op-check-perl_0.22-1+b3 libbinutils_2.35-1+rpi1 libblkid1_2.36-2 libboost-iostreams1.71.0_1.71.0-6+b1 libbrotli1_1.0.7-7 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-3+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.42-2 libcap2-bin_1:2.42-2 libcc1-0_10.1.0-6+rpi1 libclass-method-modifiers-perl_2.13-1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.35-1+rpi1 libctf0_2.35-1+rpi1 libcups2_2.3.3-2 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdbus-1-3_1.12.20-1+b3 libdebconfclient0_0.253 libdebhelper-perl_13.2 libdevel-callchecker-perl_0.008-1+b1 libdpkg-perl_1.20.5+rpi1 libdynaloader-functions-perl_0.003-1 libelf1_0.180-1 libencode-locale-perl_1.05-1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-2 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.2+dfsg-3 libgcc-10-dev_10.1.0-6+rpi1 libgcc-s1_10.1.0-6+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.1.0-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10+b3 libhogweed6_3.6-2 libhtml-parser-perl_3.72-5 libhtml-tagset-perl_3.20-4 libhtml-tree-perl_5.07-2 libhttp-cookies-perl_6.08-1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.25-1 libhttp-negotiate-perl_6.01-1 libicu67_67.1-3 libidn2-0_2.3.0-1 libimport-into-perl_1.002005-1 libio-html-perl_1.001-1 libio-pty-perl_1:1.12-1 libio-socket-ssl-perl_2.067-1 libipc-run-perl_20200505.0-1 libisl22_0.22.1-1 libjpeg62-turbo_1:2.0.5-1.1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 liblcms2-2_2.9-4 libldap-2.4-2_2.4.50+dfsg-1+b1 libldap-common_2.4.50+dfsg-1 liblocale-gettext-perl_1.07-4 liblwp-mediatypes-perl_6.04-1 liblwp-protocol-https-perl_6.09-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmodule-runtime-perl_0.016-1 libmoo-perl_2.004000-1 libmount1_2.36-2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnet-http-perl_6.19-1 libnet-ssleay-perl_1.88-3 libnettle8_3.6-2 libnpth0_1.6-2 libnspr4_2:4.27-1 libnss3_2:3.55-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.42-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libparams-classify-perl_0.015-1+b2 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libpcsclite1_1.9.0-1 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libpng16-16_1.6.37-2 libpython3-stdlib_3.8.2-3 libpython3.8-minimal_3.8.5-2 libpython3.8-stdlib_3.8.5-2 libreadline8_8.0-4 librole-tiny-perl_2.001004-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsimde-dev_0.5.0-1 libsmartcols1_2.36-2 libsqlite3-0_3.32.3-1 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.1.0-6+rpi1 libstdc++6_10.1.0-6+rpi1 libstrictures-perl_2.000006-1 libsub-override-perl_0.09-2 libsub-quote-perl_2.006006-1 libsystemd0_245.6-2+rpi1+b1 libtasn1-6_4.16.0-2 libtimedate-perl_2.3300-1 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libtry-tiny-perl_0.30-1 libubsan1_10.1.0-6+rpi1 libuchardet0_0.0.7-1 libudev1_245.6-2+rpi1+b1 libunistring2_0.9.10-4 liburi-perl_1.76-2 libuuid1_2.36-2 libwww-perl_6.46-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.6.10-3 libx11-data_2:1.6.10-3 libxapian30_1.4.15-1 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxi6_2:1.7.10-1 libxml2_2.9.10+dfsg-5+b1 libxrender1_1:0.9.10-1 libxtst6_2:1.2.3-1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 maven-repo-helper_1.9.4 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.36-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 openjdk-11-jdk-headless_11.0.8+10-1 openjdk-11-jre-headless_11.0.8+10-1 openssl_1.1.1g-1 passwd_1:4.8.1-1 patch_2.7.6-6 patchutils_0.4.2-1 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 perl-openssl-defaults_5 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python3_3.8.2-3 python3-minimal_3.8.2-3 python3.8_3.8.5-2 python3.8-minimal_3.8.5-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libssw-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 util-linux_2.36-2 wdiff_1.2.2-2 x11-common_1:7.7+20 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.sdXr6APf/trustedkeys.kbx': General error
gpgv: Signature made Thu Aug 13 11:48:12 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libssw_1.1-11.dsc
dpkg-source: info: extracting libssw in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libssw_1.1.orig.tar.gz
dpkg-source: info: unpacking libssw_1.1-11.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying build_all_libs.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying rename_tool.patch
dpkg-source: info: applying simde.patch
dpkg-source: info: applying malloc
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=d540cc9aba1e46398de3fa2f71b5e534
JOURNAL_STREAM=8:18935
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=116
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-597b56e1-fe33-4823-b93a-71fff8546ef8
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_ID=c148561
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libssw
dpkg-buildpackage: info: source version 1.1-11
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with javahelper --with jh_maven_repo_helper
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f debian/libssw*install debian/libssw*links debian/ssw-align.1
dh_auto_clean --sourcedirectory src
cd src && make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f ssw.o ssw_cpp.o ssw-align libssw.so.0 example_c example_cpp libsswjni.so *.jar ssw/Aligner.class ssw/Alignment.class *~ libssw.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
jh_clean
mh_clean
dh_clean
debian/rules binary-arch
dh binary-arch --with javahelper --with jh_maven_repo_helper
dh_update_autotools_config -a
dh_autoreconf -a
jh_linkjars -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build --sourcedirectory src -- default java
cd src && make -j4 "INSTALL=install --strip-program=true" default java
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -shared -rdynamic -Wl,-soname,libssw.so.0 -o libssw.so.0 ssw.c ssw.h ssw_cpp.h ssw_cpp.cpp -Wl,-z,relro -Wl,-z,now
cc -c -o ssw.o ssw.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
g++ -c -o ssw_cpp.o ssw_cpp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
javac -target 1.6 -source 1.6 ssw/Aligner.java
warning: [options] bootstrap class path not set in conjunction with -source 6
warning: [options] source value 6 is obsolete and will be removed in a future release
warning: [options] target value 1.6 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
4 warnings
javac -target 1.6 -source 1.6 ssw/Alignment.java
warning: [options] bootstrap class path not set in conjunction with -source 6
warning: [options] source value 6 is obsolete and will be removed in a future release
warning: [options] target value 1.6 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I"/include" -I"/include/linux" -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -fPIC -shared -rdynamic -o libsswjni.so sswjni.c ssw.c -Wl,-z,relro -Wl,-z,now
4 warnings
jar cvf ssw.jar ssw/Aligner.class ssw/Alignment.class
added manifest
adding: ssw/Aligner.class(in = 2486) (out= 1521)(deflated 38%)
adding: ssw/Alignment.class(in = 1029) (out= 596)(deflated 42%)
ar rcs libssw.a ssw.o ssw_cpp.o
cc -o example_c ssw.o example.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -lm -lz -Wl,-z,relro -Wl,-z,now
g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -lm -lz -Wl,-z,relro -Wl,-z,now
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -o ssw-align main.c kseq.h -L. -lssw -lm -lz -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
LD_PRELOAD="$LD_PRELOAD /<<PKGBUILDDIR>>/src/libssw.so" src/ssw-align -c demo/ref.fa demo/1k.fa
ERROR: ld.so: object '/<<PKGBUILDDIR>>/src/libssw.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
target_name: chr1
query_name: chr1
optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001
Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60
Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120
Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180
Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240
Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300
Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360
Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420
Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480
Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540
Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600
Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660
Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720
Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780
Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840
Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900
Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960
Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001
|||||||||||||||||||||||||||||||||||||||||
Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001
target_name: chr2
query_name: chr1
optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971
Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488
||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| |||
Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56
Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543
|||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**|
Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104
Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599
||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| ||
Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156
Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655
||**||| | ||| || |||| *||| ||*| *|||| |*||*||| ||
Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200
Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707
|||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |*
Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254
Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752
||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*|
Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312
Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806
||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*|
Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363
Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846
| *||*||||||| ||**| | |||||||| |*||| |||
Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417
Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898
||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**|||
Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475
Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949
| |*|| || |*||**| *| || |||**|||*|*|| |||***|*|**
Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526
Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004
*|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *|
Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581
Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063
||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**||
Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627
Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123
*|**|||*|***|||||| |**|*| || || || | ||*||*|*||
Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668
Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173
||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| ||||
Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723
Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221
|| || || |||| || || || |||*|||| |||| |*|| || ||| ||
Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774
Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278
|| || |*|*|*||*||||| | ||*|| || |||*|*|| | || ||
Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816
Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335
|**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||*
Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870
Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392
|*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| ||
Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913
Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450
*|| | ||*||| ||*|*||||||||| || *|||| | *|| *|||
Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954
Target: 4438451 GACACTTCTTTATTATTCAC 4438470
*||||| |*|||*|||||
Query: 955 --TACTTC-TAATTTTTCAC 971
target_name: chr3
query_name: chr1
optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998
Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026
|| |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |*
Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53
Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070
*|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |*
Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111
Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126
|||| ||*||| |*|||**||*| || |||*||**||||| |||| ||
Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157
Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180
|**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| |
Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207
Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233
*||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*||
Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263
Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280
| *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| |
Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318
Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334
*|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***|
Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370
Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386
*||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| |||||
Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426
Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446
||| |*||***||||||**||| || |||| ||*|*| | |*||||*| |
Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469
Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505
***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****||||
Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517
Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547
| |||| | |||| || *| || |||| |||| |*||*|||| *|*
Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571
Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596
*|**||| *||| |||**|*|| ||||*| *|||| |*|*||| |||||
Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625
Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636
||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| ||
Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683
Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690
|||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*||
Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735
Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748
*||*|*|||||| |||| |*| | ||| || |||||**| || *|
Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774
Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803
|*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*|||
Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827
Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861
|||| |*|*|**|*| || |||| ||| || || *|*| || |||| |
Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867
Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914
||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*|
Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916
Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971
|||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*|
Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964
Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002
*|||| |*|||||*||| || |*|||*||*||
Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998
target_name: chr4
query_name: chr1
optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001
Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050
|||||**|| ||*||*|| || | *|*| || ||||||| || || || |
Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50
Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104
||| || |||***||| |||| |||| |||| || ||| ||
Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89
Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159
|| |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| |
Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138
Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219
|| |||| ||||||| || |*|||||*||||*|*||
Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170
Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264
||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*|
Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226
Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312
||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**||
Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284
Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365
| | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*|
Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335
Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419
||*| *||*|||| |||||**|| ||||*|||*|**||||
Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378
Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471
*||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*|
Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434
Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525
| | |**|||| *||*||||||*|*||***||||| |***|||| ||||
Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484
Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575
*|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*||||
Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536
Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620
| *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*|||
Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591
Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669
|| *|||| | || |**|**|| ||*|**| |*||| ||||||*|**|
Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643
Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728
||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| ||||
Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691
Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776
|||||| ||***|| || ||| | *||||*||| |*||**||||**|| ||
Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747
Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836
|||*|*||||*|| |*|*|||| |||*||| ***|||||||| || ||
Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790
Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878
|||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*|
Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848
Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935
|||| || ||*|*|||*|| |*|||||| |||| |**|||||||*|||
Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894
Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993
|| | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*|
Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939
Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048
||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| |
Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986
Target: 48049 GAA---AT--AAAGTA 48059
||| || ||| ||
Query: 987 GAATGGATCCAAA-TA 1001
target_name: chr5
query_name: chr1
optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974
Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863
|||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*|||
Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64
Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911
||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| |
Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120
Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955
*|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| *
Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179
Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013
|| |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|*
Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226
Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063
| |*||**|*||||| *||||| *||||| || ||| |**||||| || *||||
Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282
Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109
*|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| ||||
Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335
Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147
|||*||| ||*|| | |||| ||| *||| *||||| |**|||
Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393
Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197
||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*|
Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448
Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229
| |||||| ||||*|| | || | ||| |*||*||| ||
Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507
Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270
|||****| |||| |*|*|***|||*| ||*|*| ||| ||
Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562
Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329
*||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*|
Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615
Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383
*||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*|||
Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673
Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421
| | || |||| ||||| |*|| |||| ||||*||| |||| ||
Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730
Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473
|| ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*|
Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778
Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531
||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 764.933960 seconds
|| ||*|*||||*||
Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830
Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591
||*|*||||**||||*| || |*|| |||||**||*|| | |||
Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869
Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650
*||| || |||*| || *||**||| || ||| ||*|| | ||| |
Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906
Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706
|||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *||
Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957
Target: 9707 TGTTGATTGTTTC-CTTT 9723
|**|*||| |||| ||||
Query: 958 TTCTAATT-TTTCACTTT 974
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
sed 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' debian/libssw0.install.in > debian/libssw0.install
sed 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' debian/libssw-dev.install.in > debian/libssw-dev.install
sed -e 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' \
-e 's/@DEB_JAVA_PKG_VERSION@/1.1/g' debian/libssw-dev.links.in > debian/libssw-dev.links
sed 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' debian/libssw-java.install.in > debian/libssw-java.install
sed -e 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' \
-e 's/@DEB_JAVA_PKG_VERSION@/1.1/g' debian/libssw-java.links.in > debian/libssw-java.links
mv src/ssw.jar src/ssw-1.1.jar
dh_auto_install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
jh_installjavadoc -a
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
LD_LIBRARY_PATH=`pwd`/src help2man --version-string=' ' --help-option=' ' \
-I debian/extra-man-info.txt \
-N -n 'fast Smith-Waterman aligner' \
--no-discard-stderr src/ssw-align \
| fgrep -v ERROR > debian/ssw-align.1
dh_installman
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
jh_installlibs -a
jh_classpath -a
jh_manifest -a
jh_exec -a
jh_depends -a
mh_installpoms -a
mh_linkjars --skip-clean-poms -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ssw-align/usr/bin/ssw-align was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libssw0' in '../libssw0_1.1-11_armhf.deb'.
dpkg-deb: building package 'libssw-dev' in '../libssw-dev_1.1-11_armhf.deb'.
dpkg-deb: building package 'libssw-java-dbgsym' in '../libssw-java-dbgsym_1.1-11_armhf.deb'.
dpkg-deb: building package 'ssw-align-dbgsym' in '../ssw-align-dbgsym_1.1-11_armhf.deb'.
dpkg-deb: building package 'ssw-align' in '../ssw-align_1.1-11_armhf.deb'.
dpkg-deb: building package 'libssw0-dbgsym' in '../libssw0-dbgsym_1.1-11_armhf.deb'.
dpkg-deb: building package 'libssw-java' in '../libssw-java_1.1-11_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian 2019 test autobuilder <root@raspbian.org> >../libssw_1.1-11_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-08-15T05:41:40Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libssw_1.1-11_armhf.changes:
----------------------------
Format: 1.8
Date: Thu, 13 Aug 2020 13:42:07 +0200
Source: libssw
Binary: libssw-dev libssw-java libssw-java-dbgsym libssw0 libssw0-dbgsym ssw-align ssw-align-dbgsym
Architecture: armhf
Version: 1.1-11
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian 2019 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libssw-dev - Development headers and static libraries for libssw
libssw-java - Java bindings for libssw
libssw0 - fast SIMD parallelized implementation of the Smith-Waterman algor
ssw-align - Smith-Waterman aligner based on libssw
Changes:
libssw (1.1-11) unstable; urgency=medium
.
* Team upload
* Make sure library will be build before it is used for linking
* debhelper-compat 13 (routine-update)
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Files:
005713c20141bffd65dfdeaaf8b728b0 23772 libdevel optional libssw-dev_1.1-11_armhf.deb
040db6d88c2f7629788c80d822376527 46684 debug optional libssw-java-dbgsym_1.1-11_armhf.deb
b2e5671a855219909f0b8ee0f6287825 18748 java optional libssw-java_1.1-11_armhf.deb
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7a80d13033bb085d9e1a95be490722ae 20448 libs optional libssw0_1.1-11_armhf.deb
7cb09391526191883fb27fc0f0e461c5 9865 science optional libssw_1.1-11_armhf.buildinfo
7f25a4089de71f7b3e47e970d22583a2 58040 debug optional ssw-align-dbgsym_1.1-11_armhf.deb
b1168de38a804de82fd1f9dc4c18bc7a 21996 science optional ssw-align_1.1-11_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: libssw
Binary: libssw-dev libssw-java libssw-java-dbgsym libssw0 libssw0-dbgsym ssw-align ssw-align-dbgsym
Architecture: armhf
Version: 1.1-11
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 15 Aug 2020 05:41:37 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
adduser (= 3.118),
autoconf (= 2.69-11.1),
automake (= 1:1.16.2-3),
autopoint (= 0.19.8.1-10),
autotools-dev (= 20180224.1),
base-files (= 11+rpi1),
base-passwd (= 3.5.47),
bash (= 5.0-7),
binutils (= 2.35-1+rpi1),
binutils-arm-linux-gnueabihf (= 2.35-1+rpi1),
binutils-common (= 2.35-1+rpi1),
bsdextrautils (= 2.36-2),
bsdutils (= 1:2.36-2),
build-essential (= 12.8),
bzip2 (= 1.0.8-4),
ca-certificates (= 20200601),
ca-certificates-java (= 20190909),
coreutils (= 8.30-3),
cpp (= 4:10.1.0-1+rpi1),
cpp-10 (= 10.1.0-6+rpi1),
dash (= 0.5.10.2-7),
dctrl-tools (= 2.24-3),
debconf (= 1.5.74),
debhelper (= 13.2),
debianutils (= 4.9.1),
default-jdk-headless (= 2:1.11-72+b4),
default-jre-headless (= 2:1.11-72+b4),
devscripts (= 2.20.4),
dh-autoreconf (= 19),
dh-strip-nondeterminism (= 1.9.0-1),
diffutils (= 1:3.7-3),
dirmngr (= 2.2.20-1),
dpkg (= 1.20.5+rpi1),
dpkg-dev (= 1.20.5+rpi1),
dwz (= 0.13-5),
fakeroot (= 1.24-1),
file (= 1:5.38-5),
findutils (= 4.7.0-1),
fontconfig-config (= 2.13.1-4.2),
fonts-dejavu-core (= 2.37-2),
g++ (= 4:10.1.0-1+rpi1),
g++-10 (= 10.1.0-6+rpi1),
gcc (= 4:10.1.0-1+rpi1),
gcc-10 (= 10.1.0-6+rpi1),
gcc-10-base (= 10.1.0-6+rpi1),
gettext (= 0.19.8.1-10),
gettext-base (= 0.19.8.1-10),
gnupg (= 2.2.20-1),
gnupg-l10n (= 2.2.20-1),
gnupg-utils (= 2.2.20-1),
gpg (= 2.2.20-1),
gpg-agent (= 2.2.20-1),
gpg-wks-client (= 2.2.20-1),
gpg-wks-server (= 2.2.20-1),
gpgconf (= 2.2.20-1),
gpgsm (= 2.2.20-1),
gpgv (= 2.2.20-1),
grep (= 3.4-1),
groff-base (= 1.22.4-5),
gzip (= 1.10-2),
help2man (= 1.47.16),
hostname (= 3.23),
init-system-helpers (= 1.58),
intltool-debian (= 0.35.0+20060710.5),
java-common (= 0.72),
javahelper (= 0.75),
libacl1 (= 2.2.53-8),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 10.1.0-6+rpi1),
libasound2 (= 1.2.2-2.3),
libasound2-data (= 1.2.2-2.3),
libassuan0 (= 2.5.3-7.1),
libatomic1 (= 10.1.0-6+rpi1),
libattr1 (= 1:2.4.48-5),
libaudit-common (= 1:2.8.5-3),
libaudit1 (= 1:2.8.5-3),
libavahi-client3 (= 0.8-3+b2),
libavahi-common-data (= 0.8-3+b2),
libavahi-common3 (= 0.8-3+b2),
libb-hooks-op-check-perl (= 0.22-1+b3),
libbinutils (= 2.35-1+rpi1),
libblkid1 (= 2.36-2),
libbrotli1 (= 1.0.7-7),
libbsd0 (= 0.10.0-1),
libbz2-1.0 (= 1.0.8-4),
libc-bin (= 2.31-3+rpi1),
libc-dev-bin (= 2.31-3+rpi1),
libc6 (= 2.31-3+rpi1),
libc6-dev (= 2.31-3+rpi1),
libcap-ng0 (= 0.7.9-2.2),
libcc1-0 (= 10.1.0-6+rpi1),
libclass-method-modifiers-perl (= 2.13-1),
libcom-err2 (= 1.45.6-1),
libcroco3 (= 0.6.13-1),
libcrypt-dev (= 1:4.4.16-1),
libcrypt1 (= 1:4.4.16-1),
libctf-nobfd0 (= 2.35-1+rpi1),
libctf0 (= 2.35-1+rpi1),
libcups2 (= 2.3.3-2),
libdb5.3 (= 5.3.28+dfsg1-0.6),
libdbus-1-3 (= 1.12.20-1+b3),
libdebconfclient0 (= 0.253),
libdebhelper-perl (= 13.2),
libdevel-callchecker-perl (= 0.008-1+b1),
libdpkg-perl (= 1.20.5+rpi1),
libdynaloader-functions-perl (= 0.003-1),
libelf1 (= 0.180-1),
libencode-locale-perl (= 1.05-1),
libexpat1 (= 2.2.9-1),
libfakeroot (= 1.24-1),
libffi7 (= 3.3-4),
libfile-homedir-perl (= 1.004-1),
libfile-listing-perl (= 6.04-1),
libfile-stripnondeterminism-perl (= 1.9.0-1),
libfile-which-perl (= 1.23-1),
libfontconfig1 (= 2.13.1-4.2),
libfreetype6 (= 2.10.2+dfsg-3),
libgcc-10-dev (= 10.1.0-6+rpi1),
libgcc-s1 (= 10.1.0-6+rpi1),
libgcrypt20 (= 1.8.6-2),
libgdbm-compat4 (= 1.18.1-5),
libgdbm6 (= 1.18.1-5),
libglib2.0-0 (= 2.64.4-1),
libgmp10 (= 2:6.2.0+dfsg-6),
libgnutls30 (= 3.6.14-2+b1),
libgomp1 (= 10.1.0-6+rpi1),
libgpg-error0 (= 1.38-2),
libgssapi-krb5-2 (= 1.17-10+b3),
libhogweed6 (= 3.6-2),
libhtml-parser-perl (= 3.72-5),
libhtml-tagset-perl (= 3.20-4),
libhtml-tree-perl (= 5.07-2),
libhttp-cookies-perl (= 6.08-1),
libhttp-date-perl (= 6.05-1),
libhttp-message-perl (= 6.25-1),
libhttp-negotiate-perl (= 6.01-1),
libicu67 (= 67.1-3),
libidn2-0 (= 2.3.0-1),
libimport-into-perl (= 1.002005-1),
libio-html-perl (= 1.001-1),
libio-pty-perl (= 1:1.12-1),
libio-socket-ssl-perl (= 2.067-1),
libipc-run-perl (= 20200505.0-1),
libisl22 (= 0.22.1-1),
libjpeg62-turbo (= 1:2.0.5-1.1),
libk5crypto3 (= 1.17-10+b3),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.17-10+b3),
libkrb5support0 (= 1.17-10+b3),
libksba8 (= 1.4.0-2),
liblcms2-2 (= 2.9-4),
libldap-2.4-2 (= 2.4.50+dfsg-1+b1),
libldap-common (= 2.4.50+dfsg-1),
liblocale-gettext-perl (= 1.07-4),
liblwp-mediatypes-perl (= 6.04-1),
liblwp-protocol-https-perl (= 6.09-1),
liblz4-1 (= 1.9.2-2),
liblzma5 (= 5.2.4-1),
libmagic-mgc (= 1:5.38-5),
libmagic1 (= 1:5.38-5),
libmodule-runtime-perl (= 0.016-1),
libmoo-perl (= 2.004000-1),
libmount1 (= 2.36-2),
libmpc3 (= 1.1.0-1),
libmpfr6 (= 4.0.2-1),
libncursesw6 (= 6.2-1),
libnet-http-perl (= 6.19-1),
libnet-ssleay-perl (= 1.88-3),
libnettle8 (= 3.6-2),
libnpth0 (= 1.6-2),
libnspr4 (= 2:4.27-1),
libnss3 (= 2:3.55-1),
libp11-kit0 (= 0.23.20-1),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libparams-classify-perl (= 0.015-1+b2),
libpcre2-8-0 (= 10.34-7),
libpcre3 (= 2:8.39-13),
libpcsclite1 (= 1.9.0-1),
libperl5.30 (= 5.30.3-4),
libpipeline1 (= 1.5.2-2),
libpng16-16 (= 1.6.37-2),
libpython3-stdlib (= 3.8.2-3),
libpython3.8-minimal (= 3.8.5-2),
libpython3.8-stdlib (= 3.8.5-2),
libreadline8 (= 8.0-4),
librole-tiny-perl (= 2.001004-1),
libsasl2-2 (= 2.1.27+dfsg-2),
libsasl2-modules-db (= 2.1.27+dfsg-2),
libseccomp2 (= 2.4.3-1+rpi1),
libselinux1 (= 3.1-2),
libsemanage-common (= 3.1-1),
libsemanage1 (= 3.1-1),
libsepol1 (= 3.1-1),
libsigsegv2 (= 2.12-2),
libsimde-dev (= 0.5.0-1),
libsmartcols1 (= 2.36-2),
libsqlite3-0 (= 3.32.3-1),
libssl1.1 (= 1.1.1g-1),
libstdc++-10-dev (= 10.1.0-6+rpi1),
libstdc++6 (= 10.1.0-6+rpi1),
libstrictures-perl (= 2.000006-1),
libsub-override-perl (= 0.09-2),
libsub-quote-perl (= 2.006006-1),
libsystemd0 (= 245.6-2+rpi1+b1),
libtasn1-6 (= 4.16.0-2),
libtimedate-perl (= 2.3300-1),
libtinfo5 (= 6.2-1),
libtinfo6 (= 6.2-1),
libtool (= 2.4.6-14),
libtry-tiny-perl (= 0.30-1),
libubsan1 (= 10.1.0-6+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 245.6-2+rpi1+b1),
libunistring2 (= 0.9.10-4),
liburi-perl (= 1.76-2),
libuuid1 (= 2.36-2),
libwww-perl (= 6.46-1),
libwww-robotrules-perl (= 6.02-1),
libx11-6 (= 2:1.6.10-3),
libx11-data (= 2:1.6.10-3),
libxau6 (= 1:1.0.8-1+b2),
libxcb1 (= 1.14-2),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.3-1+b2),
libxi6 (= 2:1.7.10-1),
libxml2 (= 2.9.10+dfsg-5+b1),
libxrender1 (= 1:0.9.10-1),
libxtst6 (= 2:1.2.3-1),
libzstd1 (= 1.4.5+dfsg-4+rpi1),
linux-libc-dev (= 5.7.10-1+rpi1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-4),
make (= 4.3-4),
man-db (= 2.9.3-2),
maven-repo-helper (= 1.9.4),
mawk (= 1.3.4.20200120-2),
mime-support (= 3.64),
ncurses-base (= 6.2-1),
ncurses-bin (= 6.2-1),
netbase (= 6.1),
openjdk-11-jdk-headless (= 11.0.8+10-1),
openjdk-11-jre-headless (= 11.0.8+10-1),
openssl (= 1.1.1g-1),
passwd (= 1:4.8.1-1),
patch (= 2.7.6-6),
patchutils (= 0.4.2-1),
perl (= 5.30.3-4),
perl-base (= 5.30.3-4),
perl-modules-5.30 (= 5.30.3-4),
perl-openssl-defaults (= 5),
pinentry-curses (= 1.1.0-4),
po-debconf (= 1.0.21),
python3 (= 3.8.2-3),
python3-minimal (= 3.8.2-3),
python3.8 (= 3.8.5-2),
python3.8-minimal (= 3.8.5-2),
readline-common (= 8.0-4),
sed (= 4.7-1),
sensible-utils (= 0.0.12+nmu1),
sysvinit-utils (= 2.96-3),
tar (= 1.30+dfsg-7),
ucf (= 3.0043),
util-linux (= 2.36-2),
wdiff (= 1.2.2-2),
x11-common (= 1:7.7+20),
xz-utils (= 5.2.4-1),
zlib1g (= 1:1.2.11.dfsg-2),
zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="POSIX"
SOURCE_DATE_EPOCH="1597318927"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libssw-dev_1.1-11_armhf.deb
---------------------------
new Debian package, version 2.0.
size 23772 bytes: control archive=832 bytes.
667 bytes, 17 lines control
327 bytes, 5 lines md5sums
Package: libssw-dev
Source: libssw
Version: 1.1-11
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 76
Depends: libssw0 (= 1.1-11)
Provides: libssw-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Description: Development headers and static libraries for libssw
This package provides development headers and static libraries for libssw,
a fast implementation of the Smith-Waterman algorithm using
Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
algorithm at the instruction level.
drwxr-xr-x root/root 0 2020-08-13 11:42 ./
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/include/
-rw-r--r-- root/root 8517 2020-08-13 11:42 ./usr/include/ssw.h
-rw-r--r-- root/root 8041 2016-08-19 19:30 ./usr/include/ssw_cpp.h
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 45972 2020-08-13 11:42 ./usr/lib/arm-linux-gnueabihf/libssw.a
lrwxrwxrwx root/root 0 2020-08-13 11:42 ./usr/lib/arm-linux-gnueabihf/libssw.so -> libssw.so.0
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/doc/libssw-dev/
-rw-r--r-- root/root 1540 2020-08-13 11:42 ./usr/share/doc/libssw-dev/changelog.Debian.gz
-rw-r--r-- root/root 1619 2020-08-13 11:42 ./usr/share/doc/libssw-dev/copyright
libssw-java-dbgsym_1.1-11_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 46684 bytes: control archive=532 bytes.
378 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libssw-java-dbgsym
Source: libssw
Version: 1.1-11
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 58
Depends: libssw-java (= 1.1-11)
Section: debug
Priority: optional
Description: debug symbols for libssw-java
Build-Ids: 54570555a31cc39572bf1c63448a77a562d76f80
drwxr-xr-x root/root 0 2020-08-13 11:42 ./
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/debug/.build-id/54/
-rw-r--r-- root/root 48616 2020-08-13 11:42 ./usr/lib/debug/.build-id/54/570555a31cc39572bf1c63448a77a562d76f80.debug
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-08-13 11:42 ./usr/share/doc/libssw-java-dbgsym -> libssw-java
libssw-java_1.1-11_armhf.deb
----------------------------
new Debian package, version 2.0.
size 18748 bytes: control archive=844 bytes.
578 bytes, 15 lines control
434 bytes, 6 lines md5sums
Package: libssw-java
Source: libssw
Version: 1.1-11
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 56
Depends: libc6 (>= 2.4)
Section: java
Priority: optional
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Description: Java bindings for libssw
This package provides JNI based Java bindings for libssw, a fast
implementation of the Smith-Waterman algorithm using Single-Instruction
Multiple-Data (SIMD) instructions to parallelize the algorithm at the
instruction level.
drwxr-xr-x root/root 0 2020-08-13 11:42 ./
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/jni/
-rw-r--r-- root/root 29956 2020-08-13 11:42 ./usr/lib/jni/libsswjni.so
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/doc/libssw-java/
-rw-r--r-- root/root 1540 2020-08-13 11:42 ./usr/share/doc/libssw-java/changelog.Debian.gz
-rw-r--r-- root/root 1619 2020-08-13 11:42 ./usr/share/doc/libssw-java/copyright
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/java/
-rw-r--r-- root/root 2684 2020-08-13 11:42 ./usr/share/java/ssw-1.1.jar
lrwxrwxrwx root/root 0 2020-08-13 11:42 ./usr/share/java/ssw.jar -> ssw-1.1.jar
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/maven-repo/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/maven-repo/ssw/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/maven-repo/ssw/ssw/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/maven-repo/ssw/ssw/1.0/
lrwxrwxrwx root/root 0 2020-08-13 11:42 ./usr/share/maven-repo/ssw/ssw/1.0/ssw-1.0.jar -> ../../../../java/ssw.jar
-rw-r--r-- root/root 535 2020-08-13 11:42 ./usr/share/maven-repo/ssw/ssw/1.0/ssw-1.0.pom
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/maven-repo/ssw/ssw/debian/
lrwxrwxrwx root/root 0 2020-08-13 11:42 ./usr/share/maven-repo/ssw/ssw/debian/ssw-debian.jar -> ../../../../java/ssw.jar
-rw-r--r-- root/root 538 2020-08-13 11:42 ./usr/share/maven-repo/ssw/ssw/debian/ssw-debian.pom
libssw0-dbgsym_1.1-11_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 99960 bytes: control archive=544 bytes.
384 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libssw0-dbgsym
Source: libssw
Version: 1.1-11
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 113
Depends: libssw0 (= 1.1-11)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libssw0
Build-Ids: 21bf48fcc38e403f360f5e7423bcabdf2c9178c6
drwxr-xr-x root/root 0 2020-08-13 11:42 ./
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/debug/.build-id/21/
-rw-r--r-- root/root 104544 2020-08-13 11:42 ./usr/lib/debug/.build-id/21/bf48fcc38e403f360f5e7423bcabdf2c9178c6.debug
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-08-13 11:42 ./usr/share/doc/libssw0-dbgsym -> libssw0
libssw0_1.1-11_armhf.deb
------------------------
new Debian package, version 2.0.
size 20448 bytes: control archive=1568 bytes.
1098 bytes, 21 lines control
286 bytes, 4 lines md5sums
26 bytes, 1 lines shlibs
1754 bytes, 33 lines symbols
65 bytes, 2 lines triggers
Package: libssw0
Source: libssw
Version: 1.1-11
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 59
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2), zlib1g
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Description: fast SIMD parallelized implementation of the Smith-Waterman algorithm
SSW is a fast implementation of the Smith-Waterman algorithm, which uses the
Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
algorithm at the instruction level. SSW library provides an API that can be
flexibly used by programs written in C, C++ and other languages. The library
can do protein and genome alignment directly.
Current version of this implementation is ~50 times faster than an ordinary
Smith-Waterman. It can return the Smith-Waterman score, alignment location
and traceback path (cigar) of the optimal alignment accurately; and return
the sub-optimal alignment score and location heuristically.
drwxr-xr-x root/root 0 2020-08-13 11:42 ./
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 42344 2020-08-13 11:42 ./usr/lib/arm-linux-gnueabihf/libssw.so.0
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/doc/libssw0/
-rw-r--r-- root/root 260 2020-08-13 11:42 ./usr/share/doc/libssw0/README.Debian
-rw-r--r-- root/root 1540 2020-08-13 11:42 ./usr/share/doc/libssw0/changelog.Debian.gz
-rw-r--r-- root/root 1619 2020-08-13 11:42 ./usr/share/doc/libssw0/copyright
ssw-align-dbgsym_1.1-11_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 58040 bytes: control archive=540 bytes.
372 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: ssw-align-dbgsym
Source: libssw
Version: 1.1-11
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 70
Depends: ssw-align (= 1.1-11)
Section: debug
Priority: optional
Description: debug symbols for ssw-align
Build-Ids: 3ad3ab9d8951288e3e45fdfc2b5a8e959b38ad39
drwxr-xr-x root/root 0 2020-08-13 11:42 ./
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/lib/debug/.build-id/3a/
-rw-r--r-- root/root 61260 2020-08-13 11:42 ./usr/lib/debug/.build-id/3a/d3ab9d8951288e3e45fdfc2b5a8e959b38ad39.debug
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-08-13 11:42 ./usr/share/doc/ssw-align-dbgsym -> ssw-align
ssw-align_1.1-11_armhf.deb
--------------------------
new Debian package, version 2.0.
size 21996 bytes: control archive=888 bytes.
806 bytes, 17 lines control
266 bytes, 4 lines md5sums
Package: ssw-align
Source: libssw
Version: 1.1-11
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 58
Depends: libc6 (>= 2.29), zlib1g (>= 1:1.1.4), libssw0 (= 1.1-11)
Section: science
Priority: optional
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Description: Smith-Waterman aligner based on libssw
This package provides a command-line aligner based on the libssw library,
a fast SIMD accelerated implementation of the Smith-Waterman algorithm.
The input files can be in FASTA or FASTQ format. Both target and query files
can contain multiple sequences. Each sequence in the query file will be
aligned with all sequences in the target file. Output is provided in SAM or
BLAST-like text format.
drwxr-xr-x root/root 0 2020-08-13 11:42 ./
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/bin/
-rwxr-xr-x root/root 42452 2020-08-13 11:42 ./usr/bin/ssw-align
lrwxrwxrwx root/root 0 2020-08-13 11:42 ./usr/bin/ssw_test -> ssw-align
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/doc/ssw-align/
-rw-r--r-- root/root 1540 2020-08-13 11:42 ./usr/share/doc/ssw-align/changelog.Debian.gz
-rw-r--r-- root/root 1619 2020-08-13 11:42 ./usr/share/doc/ssw-align/copyright
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/man/
drwxr-xr-x root/root 0 2020-08-13 11:42 ./usr/share/man/man1/
-rw-r--r-- root/root 935 2020-08-13 11:42 ./usr/share/man/man1/ssw-align.1.gz
lrwxrwxrwx root/root 0 2020-08-13 11:42 ./usr/share/man/man1/ssw_test.1.gz -> ssw-align.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 31648
Build-Time: 884
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 917
Job: libssw_1.1-11
Machine Architecture: armhf
Package: libssw
Package-Time: 1879
Source-Version: 1.1-11
Space: 31648
Status: successful
Version: 1.1-11
--------------------------------------------------------------------------------
Finished at 2020-08-15T05:41:40Z
Build needed 00:31:19, 31648k disk space