libseqlib →
1.2.0+dfsg-6 →
armhf → 2021-09-06 05:33:25
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| libseqlib 1.2.0+dfsg-6 (armhf) Mon, 06 Sep 2021 05:22:05 +0000 |
+==============================================================================+
Package: libseqlib
Version: 1.2.0+dfsg-6
Source Version: 1.2.0+dfsg-6
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-0a4bad2f-2b99-43c1-bccc-79e73241f421' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.3 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libseqlib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libseqlib.git
Please use:
git clone https://salsa.debian.org/med-team/libseqlib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 167 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main libseqlib 1.2.0+dfsg-6 (dsc) [2246 B]
Get:2 http://172.17.0.1/private bookworm-staging/main libseqlib 1.2.0+dfsg-6 (tar) [149 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main libseqlib 1.2.0+dfsg-6 (diff) [15.3 kB]
Fetched 167 kB in 0s (1369 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libseqlib-FJjXdz/libseqlib-1.2.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libseqlib-FJjXdz' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-JwVe1r/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-JwVe1r/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-JwVe1r/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JwVe1r/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JwVe1r/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JwVe1r/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JwVe1r/apt_archive ./ Sources [349 B]
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W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 64 not upgraded.
Need to get 852 B of archives.
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Get:1 copy:/<<BUILDDIR>>/resolver-JwVe1r/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev, libbz2-dev
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev, libbz2-dev
dpkg-deb: building package 'sbuild-build-depends-libseqlib-dummy' in '/<<BUILDDIR>>/resolver-JwVe1r/apt_archive/sbuild-build-depends-libseqlib-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libseqlib-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JwVe1r/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JwVe1r/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JwVe1r/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JwVe1r/apt_archive ./ Sources [599 B]
Get:5 copy:/<<BUILDDIR>>/resolver-JwVe1r/apt_archive ./ Packages [677 B]
Fetched 2609 B in 1s (3624 B/s)
Reading package lists...
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Reading package lists...
Install libseqlib build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbrotli1 libbwa-dev
libbz2-dev libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl
libdeflate-dev libdeflate0 libelf1 libexpat1
libfile-stripnondeterminism-perl libfml-dev libfml0 libglib2.0-0 libhts-dev
libhts3 libhtscodecs2 libicu67 libjsoncpp-dev libjsoncpp24 liblzma-dev
libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5
libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librtmp1
libsigsegv2 libssh2-1 libssw-dev libssw0 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db media-types pkg-config pkg-kde-tools
po-debconf python3 python3-minimal python3.9 python3.9-minimal
sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff samtools libcurl4-doc libgnutls28-dev
libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev liblzma-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser cdbs libmail-box-perl python3-doc python3-tk python3-venv
python3.9-venv python3.9-doc binfmt-support
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs publicsuffix libltdl-dev
libwww-perl libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbrotli1 libbwa-dev
libbz2-dev libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl
libdeflate-dev libdeflate0 libelf1 libexpat1
libfile-stripnondeterminism-perl libfml-dev libfml0 libglib2.0-0 libhts-dev
libhts3 libhtscodecs2 libicu67 libjsoncpp-dev libjsoncpp24 liblzma-dev
libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5
libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librtmp1
libsigsegv2 libssh2-1 libssw-dev libssw0 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db media-types pkg-config pkg-kde-tools
po-debconf python3 python3-minimal python3.9 python3.9-minimal
sbuild-build-depends-libseqlib-dummy sensible-utils zlib1g-dev
0 upgraded, 68 newly installed, 0 to remove and 64 not upgraded.
Need to get 30.2 MB of archives.
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Get:1 copy:/<<BUILDDIR>>/resolver-JwVe1r/apt_archive ./ sbuild-build-depends-libseqlib-dummy 0.invalid.0 [960 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.2-1+rpi1 [791 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.2.10-2 [73.4 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.2-1+rpi1 [1625 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
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Get:12 http://172.17.0.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.2-1+rpi1 [1616 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf python3.9 armhf 3.9.2-1+rpi1 [466 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
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Get:17 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
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Get:26 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.3-2 [814 kB]
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Get:31 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
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Get:34 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
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Get:37 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [580 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.1 [1056 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libbwa-dev armhf 0.7.17-6 [137 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.9.0-3 [151 kB]
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Get:55 http://172.17.0.1/private bookworm-staging/main armhf libfml0 armhf 0.1+git20190320.b499514-1+rpi1 [68.7 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
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Get:58 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.68.4-1 [1197 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.1.1-2 [49.7 kB]
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Get:61 http://172.17.0.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
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Get:63 http://172.17.0.1/private bookworm-staging/main armhf libjsoncpp24 armhf 1.9.4-4 [67.0 kB]
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Get:65 http://172.17.0.1/private bookworm-staging/main armhf libssw0 armhf 1.1-13 [21.0 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libssw-dev armhf 1.1-13 [24.0 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf pkg-kde-tools all 0.15.32 [96.7 kB]
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Setting up bsdextrautils (2.37.2-1) ...
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Setting up libfml0:armhf (0.1+git20190320.b499514-1+rpi1) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up pkg-config (0.29.2-1) ...
Setting up d-shlibs (0.99) ...
Setting up libbwa-dev (0.7.17-6) ...
Setting up libjsoncpp24:armhf (1.9.4-4) ...
Setting up liblzma-dev:armhf (5.2.5-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up sensible-utils (0.0.17) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
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Setting up libelf1:armhf (0.185-2) ...
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Setting up libpython3.9-stdlib:armhf (3.9.2-1+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.2-3) ...
Setting up libbz2-dev:armhf (1.0.8-4) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up libjsoncpp-dev:armhf (1.9.4-4) ...
Setting up gettext (0.21-4) ...
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Setting up libssw-dev:armhf (1.1-13) ...
Setting up libtool (2.4.6-15) ...
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Setting up libcurl4-gnutls-dev:armhf (7.74.0-1.3) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.69-14) ...
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Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up python3.9 (3.9.2-1+rpi1) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhts3:armhf (1.13+ds-2) ...
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Setting up libhts-dev:armhf (1.13+ds-2) ...
Setting up python3 (3.9.2-3) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
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Setting up debhelper (13.5.1) ...
Setting up sbuild-build-depends-libseqlib-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-13+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-13+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1+rpi1 base-passwd_3.5.51 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 d-shlibs_0.99 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.77 debhelper_13.5.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2+rpi1 libblkid1_2.36.1-8 libbrotli1_1.0.9-2+b1 libbwa-dev_0.7.17-6 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-13+rpi1 libc-dev-bin_2.31-13+rpi1 libc6_2.31-13+rpi1 libc6-dev_2.31-13+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.46.2-2 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2+rpi1 libctf0_2.35.2-2+rpi1 libcurl3-gnutls_7.74.0-1.3 libcurl4-gnutls-dev_7.74.0-1.3 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.1 libdeflate-dev_1.7-2 libdeflate0_1.7-2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.2.10-2 libext2fs2_1.46.2-2 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libfml-dev_0.1+git20190320.b499514-1+rpi1 libfml0_0.1+git20190320.b499514-1+rpi1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libglib2.0-0_2.68.4-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-6 libhogweed6_3.7.3-1 libhts-dev_1.13+ds-2 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-2 libicu67_67.1-7 libidn2-0_2.3.0-5 libisl23_0.23-1 libjsoncpp-dev_1.9.4-4 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libksba8_1.5.0-3 libldap-2.4-2_2.4.57+dfsg-3 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4+deb11u1 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.2-3 libpython3.9-minimal_3.9.2-1+rpi1 libpython3.9-stdlib_3.9.2-1+rpi1 libreadline8_8.1-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-8 libsqlite3-0_3.34.1-3 libss2_1.46.2-2 libssh2-1_1.9.0-3 libssl1.1_1.1.1k-1 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.3-6+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.3-6+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-8 libxml2_2.9.10+dfsg-6.7 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.2-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mount_2.36.1-8 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4+deb11u1 perl-base_5.32.1-4+deb11u1 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 pkg-kde-tools_0.15.32 po-debconf_1.0.21+nmu1 python3_3.9.2-3 python3-minimal_3.9.2-3 python3.9_3.9.2-1+rpi1 python3.9-minimal_3.9.2-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libseqlib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.17 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.36.1-8 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.T6Uuo3v4/trustedkeys.kbx': General error
gpgv: Signature made Tue Aug 31 19:59:22 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libseqlib_1.2.0+dfsg-6.dsc
dpkg-source: info: extracting libseqlib in /<<BUILDDIR>>/libseqlib-1.2.0+dfsg
dpkg-source: info: unpacking libseqlib_1.2.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking libseqlib_1.2.0+dfsg-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libs.patch
dpkg-source: info: applying adapt_to_debian_fermi-lite.patch
dpkg-source: info: applying fix_fermi-lite_usage.patch
dpkg-source: info: applying fix_htslib_usage.patch
dpkg-source: info: applying fml_include_path.patch
dpkg-source: info: applying dynamic_lib.patch
dpkg-source: info: applying use_debian_packaged_jsoncpp.patch
dpkg-source: info: applying use_debian_packaged_ssw.patch
dpkg-source: info: applying pkg-config.patch
Check disc space
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Sufficient free space for build
User Environment
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APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-0a4bad2f-2b99-43c1-bccc-79e73241f421
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libseqlib
dpkg-buildpackage: info: source version 1.2.0+dfsg-6
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with pkgkde_symbolshelper
dh_clean
debian/rules binary-arch
dh binary-arch --with pkgkde_symbolshelper
dh_update_autotools_config -a
dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac,
libtoolize: and rerunning libtoolize and aclocal.
libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT'
configure.ac:17: installing './compile'
configure.ac:19: installing './config.guess'
configure.ac:19: installing './config.sub'
configure.ac:4: installing './install-sh'
configure.ac:4: installing './missing'
src/Makefile.am: installing './depcomp'
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
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configure: creating ./config.status
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config.status: creating src/seqtools/Makefile
config.status: creating libseqlib.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
make all-recursive
make[2]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
Making all in src
make[3]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg/src'
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FastqReader.lo `test -f 'FastqReader.cpp' || echo './'`FastqReader.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BFC.lo `test -f 'BFC.cpp' || echo './'`BFC.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-ReadFilter.lo `test -f 'ReadFilter.cpp' || echo './'`ReadFilter.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-SeqPlot.lo `test -f 'SeqPlot.cpp' || echo './'`SeqPlot.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-FastqReader.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -fPIC -DPIC -o .libs/libseqlib_la-SeqPlot.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -fPIC -DPIC -o .libs/libseqlib_la-ReadFilter.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -fPIC -DPIC -o .libs/libseqlib_la-BFC.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -o libseqlib_la-FastqReader.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -o libseqlib_la-BFC.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-GenomicRegion.lo `test -f 'GenomicRegion.cpp' || echo './'`GenomicRegion.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -fPIC -DPIC -o .libs/libseqlib_la-GenomicRegion.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-RefGenome.lo `test -f 'RefGenome.cpp' || echo './'`RefGenome.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -fPIC -DPIC -o .libs/libseqlib_la-RefGenome.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -o libseqlib_la-SeqPlot.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -o libseqlib_la-RefGenome.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamWriter.lo `test -f 'BamWriter.cpp' || echo './'`BamWriter.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamWriter.o
In file included from /usr/include/c++/10/vector:72,
from ../SeqLib/ReadFilter.h:7,
from ReadFilter.cpp:1:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SeqLib::Filter::AbstractRule&}; _Tp = SeqLib::Filter::AbstractRule; _Alloc = std::allocator<SeqLib::Filter::AbstractRule>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SeqLib::Filter::AbstractRule>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../SeqLib/ReadFilter.h:7,
from ReadFilter.cpp:1:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void SeqLib::Filter::ReadFilter::AddRule(const SeqLib::Filter::AbstractRule&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function 'void SeqLib::Filter::ReadFilterCollection::CheckHasIncluder()':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -o libseqlib_la-BamWriter.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamReader.lo `test -f 'BamReader.cpp' || echo './'`BamReader.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamReader.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BWAWrapper.lo `test -f 'BWAWrapper.cpp' || echo './'`BWAWrapper.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -fPIC -DPIC -o .libs/libseqlib_la-BWAWrapper.o
In file included from /usr/include/c++/10/vector:72,
from ../SeqLib/BWAWrapper.h:5,
from BWAWrapper.cpp:9:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const mem_aln_t&}; _Tp = mem_aln_t; _Alloc = std::allocator<mem_aln_t>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<mem_aln_t>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from ../SeqLib/BWAWrapper.h:7,
from BWAWrapper.cpp:9:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]':
/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]':
/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
1819 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]':
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from ../SeqLib/BWAWrapper.h:7,
from BWAWrapper.cpp:9:
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >; _Distance = int; _Tp = mem_aln_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from ../SeqLib/BWAWrapper.h:7,
from BWAWrapper.cpp:9:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]':
/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
1662 | __heap_select(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]':
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1925 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
1937 | std::__heap_select(__first, __middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In constructor 'SeqLib::Filter::ReadFilterCollection::ReadFilterCollection(const string&, const SeqLib::BamHeader&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../SeqLib/BWAWrapper.h:5,
from BWAWrapper.cpp:9:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void SeqLib::BWAWrapper::AlignSequence(const string&, const string&, SeqLib::BamRecordVector&, bool, double, int) const':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from ../SeqLib/BWAWrapper.h:7,
from BWAWrapper.cpp:9:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -o libseqlib_la-BWAWrapper.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -o libseqlib_la-ReadFilter.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -o libseqlib_la-BamReader.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -o libseqlib_la-GenomicRegion.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamRecord.lo `test -f 'BamRecord.cpp' || echo './'`BamRecord.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamRecord.o
In file included from /usr/include/c++/10/vector:72,
from ../SeqLib/BamRecord.h:6,
from BamRecord.cpp:1:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'std::vector<double> SeqLib::BamRecord::GetSmartDoubleTag(const string&) const':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -o libseqlib_la-BamRecord.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FermiAssembler.lo `test -f 'FermiAssembler.cpp' || echo './'`FermiAssembler.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -fPIC -DPIC -o .libs/libseqlib_la-FermiAssembler.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -o libseqlib_la-FermiAssembler.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamHeader.lo `test -f 'BamHeader.cpp' || echo './'`BamHeader.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamHeader.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -o libseqlib_la-BamHeader.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 2:0 -lfml `/usr/bin/pkg-config --libs htslib` `/usr/bin/pkg-config --libs jsoncpp` -lssw -Wl,-z,relro -Wl,-z,now -o libseqlib.la -rpath /usr/lib/arm-linux-gnueabihf libseqlib_la-FastqReader.lo libseqlib_la-BFC.lo libseqlib_la-ReadFilter.lo libseqlib_la-SeqPlot.lo libseqlib_la-GenomicRegion.lo libseqlib_la-RefGenome.lo libseqlib_la-BamWriter.lo libseqlib_la-BamReader.lo libseqlib_la-BWAWrapper.lo libseqlib_la-BamRecord.lo libseqlib_la-FermiAssembler.lo libseqlib_la-BamHeader.lo -lbz2 -llzma -lz -pthread
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/10/crtbeginS.o .libs/libseqlib_la-FastqReader.o .libs/libseqlib_la-BFC.o .libs/libseqlib_la-ReadFilter.o .libs/libseqlib_la-SeqPlot.o .libs/libseqlib_la-GenomicRegion.o .libs/libseqlib_la-RefGenome.o .libs/libseqlib_la-BamWriter.o .libs/libseqlib_la-BamReader.o .libs/libseqlib_la-BWAWrapper.o .libs/libseqlib_la-BamRecord.o .libs/libseqlib_la-FermiAssembler.o .libs/libseqlib_la-BamHeader.o -lfml -lhts -ljsoncpp -lssw -lbz2 -llzma -lz -L/usr/lib/gcc/arm-linux-gnueabihf/10 -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/10/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/crtn.o -g -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -pthread -Wl,-soname -Wl,libseqlib.so.2 -o .libs/libseqlib.so.2.0.0
libtool: link: (cd ".libs" && rm -f "libseqlib.so.2" && ln -s "libseqlib.so.2.0.0" "libseqlib.so.2")
libtool: link: (cd ".libs" && rm -f "libseqlib.so" && ln -s "libseqlib.so.2.0.0" "libseqlib.so")
libtool: link: ar cr .libs/libseqlib.a libseqlib_la-FastqReader.o libseqlib_la-BFC.o libseqlib_la-ReadFilter.o libseqlib_la-SeqPlot.o libseqlib_la-GenomicRegion.o libseqlib_la-RefGenome.o libseqlib_la-BamWriter.o libseqlib_la-BamReader.o libseqlib_la-BWAWrapper.o libseqlib_la-BamRecord.o libseqlib_la-FermiAssembler.o libseqlib_la-BamHeader.o
libtool: link: ranlib .libs/libseqlib.a
libtool: link: ( cd ".libs" && rm -f "libseqlib.la" && ln -s "../libseqlib.la" "libseqlib.la" )
make[3]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg/src'
make[3]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
dh_auto_test -a
make -j4 check VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
Making check in src
make[2]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg/src'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<BUILDDIR>>/libseqlib-1.2.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
echo "mkdir -p lib && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a lib"
mkdir -p lib && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a lib
make[1]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
dh_install
# Trick to get also headers moved by d-shlibmove
cp -a SeqLib debian # note: also GenomicRegionCollection.cpp is really needed by freebayes
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/SeqLib usr/include \
--override s/libfml0-dev/libfml-dev/ \
--override s/libssw0-dev/libssw-dev/ \
src/.libs/libseqlib.so
Library package automatic movement utility
--> libfml-dev package exists.
--> libhts-dev package exists.
--> libjsoncpp-dev package exists.
--> libssw-dev package exists.
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libseqlib2/usr/lib/arm-linux-gnueabihf
mv src/.libs/libseqlib.a debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf
mv src/.libs/libseqlib.so debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/libseqlib-1.2.0+dfsg/src/.libs/libseqlib.so.2 debian/libseqlib2/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/libseqlib-1.2.0+dfsg/src/.libs/libseqlib.so.2.0.0 debian/libseqlib2/usr/lib/arm-linux-gnueabihf
PKGDEV=libseqlib-dev
PKGSHL=libseqlib2
install -d -m 755 debian/libseqlib-dev/usr/include
mv debian/SeqLib debian/libseqlib-dev/usr/include
mkdir -p /<<BUILDDIR>>/libseqlib-1.2.0+dfsg/debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv libseqlib.pc /<<BUILDDIR>>/libseqlib-1.2.0+dfsg/debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
make[1]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below
dpkg-gensymbols: warning: debian/libseqlib2/DEBIAN/symbols doesn't match completely debian/libseqlib2.symbols
--- debian/libseqlib2.symbols (libseqlib2_1.2.0+dfsg-6_armhf)
+++ dpkg-gensymbolsaUzKgB 2021-09-06 05:32:55.220007486 +0000
@@ -15,7 +15,7 @@
_ZN12aho_corasick13interval_treeINS_7ahoemitIcEEE4nodeD2Ev@Base 1.2.0
_ZN6SeqLib10BWAWrapper10SetGapOpenEi@Base 1.2.0
_ZN6SeqLib10BWAWrapper11SetZDropoffEi@Base 1.2.0
- (optional)_ZN6SeqLib10BWAWrapper11seqlib_add1EPK6kseq_tP8bntseq_tPhPlPiS8_PP9bntamb1_t@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZN6SeqLib10BWAWrapper11seqlib_add1EPK6kseq_tP8bntseq_tPhPlPiS8_PP9bntamb1_t@Base 1.2.0
(optional)_ZN6SeqLib10BWAWrapper11seqlib_add1EPK6kseq_tP8bntseq_tPhPxPiS8_PP9bntamb1_t@Base 1.2.0
_ZN6SeqLib10BWAWrapper12SetBandwidthEi@Base 1.2.0
_ZN6SeqLib10BWAWrapper14ConstructIndexERKSt6vectorINS_17UnalignedSequenceESaIS2_EE@Base 1.2.0
@@ -24,7 +24,7 @@
_ZN6SeqLib10BWAWrapper16SetReseedTriggerEf@Base 1.2.0
_ZN6SeqLib10BWAWrapper18SetMismatchPenaltyEi@Base 1.2.0
(optional)_ZN6SeqLib10BWAWrapper18seqlib_add_to_annsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_P9bntann1_tj@Base 1.2.0
- (optional)_ZN6SeqLib10BWAWrapper18seqlib_add_to_annsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_P9bntann1_tm@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZN6SeqLib10BWAWrapper18seqlib_add_to_annsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_P9bntann1_tm@Base 1.2.0
_ZN6SeqLib10BWAWrapper18seqlib_bwt_pac2bwtEPKhi@Base 1.2.0
_ZN6SeqLib10BWAWrapper24Set3primeClippingPenaltyEi@Base 1.2.0
_ZN6SeqLib10BWAWrapper24Set5primeClippingPenaltyEi@Base 1.2.0
@@ -49,12 +49,12 @@
(optional)_ZN6SeqLib13TIntervalTreeIijEC2ERSt6vectorINS_9TIntervalIijEESaIS4_EEjjjjj@Base 1.2.0
(optional)_ZN6SeqLib13TIntervalTreeIijED1Ev@Base 1.2.0
(optional)_ZN6SeqLib13TIntervalTreeIijED2Ev@Base 1.2.0
- (optional)_ZN6SeqLib13TIntervalTreeIimEC1ERKS1_@Base 1.2.0
- (optional)_ZN6SeqLib13TIntervalTreeIimEC1ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.2.0
- (optional)_ZN6SeqLib13TIntervalTreeIimEC2ERKS1_@Base 1.2.0
- (optional)_ZN6SeqLib13TIntervalTreeIimEC2ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.2.0
- (optional)_ZN6SeqLib13TIntervalTreeIimED1Ev@Base 1.2.0
- (optional)_ZN6SeqLib13TIntervalTreeIimED2Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZN6SeqLib13TIntervalTreeIimEC1ERKS1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZN6SeqLib13TIntervalTreeIimEC1ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZN6SeqLib13TIntervalTreeIimEC2ERKS1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZN6SeqLib13TIntervalTreeIimEC2ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZN6SeqLib13TIntervalTreeIimED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZN6SeqLib13TIntervalTreeIimED2Ev@Base 1.2.0
_ZN6SeqLib14FermiAssembler10ClearReadsEv@Base 1.2.0
_ZN6SeqLib14FermiAssembler12ClearContigsEv@Base 1.2.0
_ZN6SeqLib14FermiAssembler12CorrectReadsEv@Base 1.2.0
@@ -80,7 +80,7 @@
_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE13CreateTreeMapEv@Base 1.2.0
(optional)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE14CoordinateSortEv@Base 1.2.0
_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE25MergeOverlappingIntervalsEv@Base 1.2.0
- (optional)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE6ConcatERKS2_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE6ConcatERKS2_@Base 1.2.0
_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.2.0
(optional)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1Ev@Base 1.2.0
_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.2.0
@@ -113,8 +113,8 @@
_ZN6SeqLib6Filter10ReadFilterD1Ev@Base 1.2.0
_ZN6SeqLib6Filter10ReadFilterD2Ev@Base 1.2.0
_ZN6SeqLib6Filter11AhoCorasick12TrieFromFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.2.0
- (optional)_ZN6SeqLib6Filter11AhoCorasickC1Ev@Base 1.2.0
- (optional)_ZN6SeqLib6Filter11AhoCorasickC2Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZN6SeqLib6Filter11AhoCorasickC1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZN6SeqLib6Filter11AhoCorasickC2Ev@Base 1.2.0
(optional)_ZN6SeqLib6Filter11AhoCorasickD1Ev@Base 1.2.0
(optional)_ZN6SeqLib6Filter11AhoCorasickD2Ev@Base 1.2.0
_ZN6SeqLib6Filter12AbstractRule12addMotifRuleERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb@Base 1.2.0
@@ -123,7 +123,9 @@
_ZN6SeqLib6Filter12AbstractRule7isValidERKNS_9BamRecordE@Base 1.2.0
_ZN6SeqLib6Filter12AbstractRule9parseJsonERKN4Json5ValueE@Base 1.2.0
_ZN6SeqLib6Filter12AbstractRuleC1ERKS1_@Base 1.2.0
+ _ZN6SeqLib6Filter12AbstractRuleC1Ev@Base 1.2.0+dfsg-6
_ZN6SeqLib6Filter12AbstractRuleC2ERKS1_@Base 1.2.0
+ _ZN6SeqLib6Filter12AbstractRuleC2Ev@Base 1.2.0+dfsg-6
_ZN6SeqLib6Filter12AbstractRuleD1Ev@Base 1.2.0
_ZN6SeqLib6Filter12AbstractRuleD2Ev@Base 1.2.0
_ZN6SeqLib6Filter15convert_to_boolERKN4Json5ValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.2.0
@@ -200,7 +202,7 @@
_ZN6SeqLiblsERSoRKNS_9BamRecordE@Base 1.2.0
_ZN6SeqLiblsERSoRKNS_9BamWriterE@Base 1.2.0
(optional)_ZN9__gnu_cxx6__stoaIlicJiEEET0_PFT_PKT1_PPS3_DpT2_EPKcS5_PjS9_@Base 1.2.0
- (optional)_ZN9__gnu_cxx6__stoaIlicJiEEET0_PFT_PKT1_PPS3_DpT2_EPKcS5_PmS9_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZN9__gnu_cxx6__stoaIlicJiEEET0_PFT_PKT1_PPS3_DpT2_EPKcS5_PmS9_@Base 1.2.0
_ZNK6SeqLib10BWAWrapper10WriteIndexERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.2.0
_ZNK6SeqLib10BWAWrapper11ChrIDToNameB5cxx11Ei@Base 1.2.0
_ZNK6SeqLib10BWAWrapper12NumSequencesEv@Base 1.2.0
@@ -225,7 +227,7 @@
_ZNK6SeqLib13GenomicRegionltERKS0_@Base 1.2.0
_ZNK6SeqLib13GenomicRegionneERKS0_@Base 1.2.0
(optional)_ZNK6SeqLib13TIntervalTreeIijE15findOverlappingEjjRSt6vectorINS_9TIntervalIijEESaIS4_EE@Base 1.2.0
- (optional)_ZNK6SeqLib13TIntervalTreeIimE15findOverlappingEmmRSt6vectorINS_9TIntervalIimEESaIS4_EE@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNK6SeqLib13TIntervalTreeIimE15findOverlappingEmmRSt6vectorINS_9TIntervalIimEESaIS4_EE@Base 1.2.0
_ZNK6SeqLib14FermiAssembler10GetContigsB5cxx11Ev@Base 1.2.0
_ZNK6SeqLib14FermiAssembler12GetSequencesEv@Base 1.2.0
_ZNK6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE13CountOverlapsERKS1_@Base 1.2.0
@@ -265,21 +267,21 @@
_ZNK6SeqLib9BamRecord27CountBWASecondaryAlignmentsEv@Base 1.2.0
_ZNK6SeqLib9BamRecord6GetTagERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERS6_@Base 1.2.0
_ZNK6SeqLib9BamRecord7GetZTagERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERS6_@Base 1.2.0
- (optional)_ZNK6SeqLib9BamRecord8GetCigarEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNK6SeqLib9BamRecord8GetCigarEv@Base 1.2.0
_ZNK6SeqLib9BamRecord8SequenceB5cxx11Ev@Base 1.2.0
_ZNK6SeqLib9BamRecord9MeanPhredEv@Base 1.2.0
_ZNK6SeqLib9BamWriter10BuildIndexEv@Base 1.2.0
_ZNK6SeqLib9BamWriter11WriteHeaderEv@Base 1.2.0
_ZNK6SeqLib9RefGenome11QueryRegionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii@Base 1.2.0
(optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEjRS7_j@Base 1.2.0
- (optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.2.0
(optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE5countERS7_@Base 1.2.0
(optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEjRS7_j@Base 1.2.0
- (optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.2.0
_ZNKSt5ctypeIcE8do_widenEc@Base 1.2.0
_ZNKSt5ctypeIcE9do_narrowEcc@Base 1.2.0
_ZNKSt7__cxx1112regex_traitsIcE16lookup_classnameIPKcEENS1_10_RegexMaskET_S6_b@Base 1.2.0
- (optional)_ZNKSt7__cxx1112regex_traitsIcE16translate_nocaseEc@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNKSt7__cxx1112regex_traitsIcE16translate_nocaseEc@Base 1.2.0
_ZNKSt7__cxx1112regex_traitsIcE17transform_primaryIPKcEENS_12basic_stringIcSt11char_traitsIcESaIcEEET_SA_@Base 1.2.0
_ZNKSt7__cxx1112regex_traitsIcE18lookup_collatenameIPKcEENS_12basic_stringIcSt11char_traitsIcESaIcEEET_SA_@Base 1.2.0
(optional)_ZNKSt8__detail20_RegexTranslatorBaseINSt7__cxx1112regex_traitsIcEELb0ELb1EE12_M_transformEc@Base 1.2.0
@@ -289,9 +291,9 @@
_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.2.0
_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD2Ev@Base 1.2.0
(optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEjRKj@Base 1.2.0
- (optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.2.0
(optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEjRKj@Base 1.2.0
- (optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.2.0
(optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEED1Ev@Base 1.2.0
(optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEED2Ev@Base 1.2.0
(optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIijEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.2.0
@@ -301,64 +303,91 @@
(optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIijEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE9_M_rehashEjRKj@Base 1.2.0
(optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIijEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev@Base 1.2.0
(optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIijEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD2Ev@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE4findERS1_@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev@Base 1.2.0
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(optional)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIijEESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEE9_M_rehashEjRKj@Base 1.2.0
(optional)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIijEESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev@Base 1.2.0
(optional)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIijEESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIimEESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIimEESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIimEESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev@Base 1.2.0
- (optional)_ZNSt10unique_ptrIN12aho_corasick13interval_treeINS0_7ahoemitIcEEE4nodeESt14default_deleteIS5_EED1Ev@Base 1.2.0
- (optional)_ZNSt10unique_ptrIN12aho_corasick13interval_treeINS0_7ahoemitIcEEE4nodeESt14default_deleteIS5_EED2Ev@Base 1.2.0
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+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIimEESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIimEESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev@Base 1.2.0
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+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt10unique_ptrIN12aho_corasick13interval_treeINS0_7ahoemitIcEEE4nodeESt14default_deleteIS5_EED2Ev@Base 1.2.0
(optional)_ZNSt11_Deque_baseIlSaIlEE17_M_initialize_mapEj@Base 1.2.0
- (optional)_ZNSt11_Deque_baseIlSaIlEE17_M_initialize_mapEm@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt11_Deque_baseIlSaIlEE17_M_initialize_mapEm@Base 1.2.0
_ZNSt11_Deque_baseIlSaIlEED1Ev@Base 1.2.0
_ZNSt11_Deque_baseIlSaIlEED2Ev@Base 1.2.0
(optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPN12aho_corasick7ahoemitIcEEEEvT_S6_@Base 1.2.0
(optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvT_S9_@Base 1.2.0
(optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPNSt8__detail6_StateIcEEEEvT_S6_@Base 1.2.0
- (optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPSt4pairIlSt6vectorINSt7__cxx119sub_matchIN9__gnu_cxx17__normal_iteratorIPKcNS4_12basic_stringIcSt11char_traitsIcESaIcEEEEEEESaISG_EEEEEvT_SL_@Base 1.2.0
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(optional)_ZNSt14_Function_baseD1Ev@Base 1.2.0
(optional)_ZNSt14_Function_baseD2Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
- (optional)_ZNSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
- (optional)_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
- (optional)_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_releaseEv@Base 1.2.0
+ _ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-6
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+ _ZNSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-6
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+ _ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.2.0+dfsg-6
+ _ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.2.0+dfsg-6
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@@ -391,42 +420,78 @@
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+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
+ _ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.2.0+dfsg-6
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
+ _ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.2.0+dfsg-6
+ _ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-6
+ _ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.2.0+dfsg-6
+ _ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.2.0+dfsg-6
+ _ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.2.0+dfsg-6
+ _ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.2.0
_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev@Base 1.2.0
_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_ED1Ev@Base 1.2.0
@@ -435,12 +500,12 @@
_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE16_M_push_back_auxIJRKS5_EEEvDpOT_@Base 1.2.0
(optional)_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE16_M_push_back_auxIJS5_EEEvDpOT_@Base 1.2.0
(optional)_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE17_M_reallocate_mapEjb@Base 1.2.0
- (optional)_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE17_M_reallocate_mapEmb@Base 1.2.0
- (optional)_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE9push_backERKS5_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE17_M_reallocate_mapEmb@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE9push_backERKS5_@Base 1.2.0
(optional)_ZNSt5dequeIPN12aho_corasick5stateIcEESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_@Base 1.2.0
_ZNSt5dequeIlSaIlEE16_M_push_back_auxIJRKlEEEvDpOT_@Base 1.2.0
- (optional)_ZNSt5stackIlSt5dequeIlSaIlEEEC1IS2_vEEv@Base 1.2.0
- (optional)_ZNSt5stackIlSt5dequeIlSaIlEEEC2IS2_vEEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt5stackIlSt5dequeIlSaIlEEEC1IS2_vEEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt5stackIlSt5dequeIlSaIlEEEC2IS2_vEEv@Base 1.2.0
(optional)_ZNSt6vectorI9mem_aln_tSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 1.2.0
_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
@@ -462,24 +527,24 @@
(optional)_ZNSt6vectorIN6SeqLib9BamRecordESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIN6SeqLib9TIntervalIijEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIN6SeqLib9TIntervalIijEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
- (optional)_ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
- (optional)_ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 1.2.0
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.2.0
- (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE9push_backERKS5_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE9push_backERKS5_@Base 1.2.0
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC1ERKS7_@Base 1.2.0
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 1.2.0
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 1.2.0
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 1.2.0
(optional)_ZNSt6vectorINSt7__cxx1112regex_traitsIcE10_RegexMaskESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorINSt7__cxx119sub_matchIN9__gnu_cxx17__normal_iteratorIPKcNS0_12basic_stringIcSt11char_traitsIcESaIcEEEEEEESaISC_EE14_M_fill_assignEjRKSC_@Base 1.2.0
- (optional)_ZNSt6vectorINSt7__cxx119sub_matchIN9__gnu_cxx17__normal_iteratorIPKcNS0_12basic_stringIcSt11char_traitsIcESaIcEEEEEEESaISC_EE14_M_fill_assignEmRKSC_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt6vectorINSt7__cxx119sub_matchIN9__gnu_cxx17__normal_iteratorIPKcNS0_12basic_stringIcSt11char_traitsIcESaIcEEEEEEESaISC_EE14_M_fill_assignEmRKSC_@Base 1.2.0
_ZNSt6vectorINSt8__detail6_StateIcEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIPN12aho_corasick5stateIcEESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIPN6SeqLib11PlottedReadESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIPcSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 1.2.0
- (optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EE12emplace_backIJS7_EEEvDpOT_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EE12emplace_backIJS7_EEEvDpOT_@Base 1.2.0
(optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EE17_M_realloc_insertIJS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EEC1ERKS9_@Base 1.2.0
(optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EEC2ERKS9_@Base 1.2.0
@@ -497,7 +562,7 @@
(optional)_ZNSt6vectorIdSaIdEE17_M_realloc_insertIJdEEEvN9__gnu_cxx17__normal_iteratorIPdS1_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.2.0
- (optional)_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base 1.2.0
(optional)_ZNSt7__cxx1110_List_baseIN6SeqLib13GenomicRegionESaIS2_EE8_M_clearEv@Base 1.2.0
_ZNSt7__cxx1111basic_regexIcNS_12regex_traitsIcEEED1Ev@Base 1.2.0
_ZNSt7__cxx1111basic_regexIcNS_12regex_traitsIcEEED2Ev@Base 1.2.0
@@ -510,39 +575,39 @@
(optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EEC1ERKSB_@Base 1.2.0
(optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EEC2ERKSB_@Base 1.2.0
_ZNSt8_Rb_treeIcSt4pairIKcSt10unique_ptrIN12aho_corasick5stateIcEESt14default_deleteIS5_EEESt10_Select1stIS9_ESt4lessIcESaIS9_EE24_M_get_insert_unique_posERS1_@Base 1.2.0
- (optional)_ZNSt8_Rb_treeIcSt4pairIKcSt10unique_ptrIN12aho_corasick5stateIcEESt14default_deleteIS5_EEESt10_Select1stIS9_ESt4lessIcESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZNSt8_Rb_treeIcSt4pairIKcSt10unique_ptrIN12aho_corasick5stateIcEESt14default_deleteIS5_EEESt10_Select1stIS9_ESt4lessIcESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS1_@Base 1.2.0
(optional)_ZNSt8_Rb_treeIlSt4pairIKllESt10_Select1stIS2_ESt4lessIlESaIS2_EE24_M_get_insert_unique_posERS1_@Base 1.2.0
- (optional)_ZNSt8_Rb_treeIlSt4pairIKllESt10_Select1stIS2_ESt4lessIlESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 1.2.0
- (optional)_ZNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0EE13_M_make_rangeEcc@Base 1.2.0
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(optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIP9mem_aln_tSt6vectorIS2_SaIS2_EEEEiNS0_5__ops15_Iter_comp_iterIPFbRKS2_SB_EEEEvT_SF_T0_T1_@Base 1.2.0
- (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIP9mem_aln_tSt6vectorIS2_SaIS2_EEEElNS0_5__ops15_Iter_comp_iterIPFbRKS2_SB_EEEEvT_SF_T0_T1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIP9mem_aln_tSt6vectorIS2_SaIS2_EEEElNS0_5__ops15_Iter_comp_iterIPFbRKS2_SB_EEEEvT_SF_T0_T1_@Base 1.2.0
(optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEEiNS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E0_EEEvT_SK_T0_T1_@Base 1.2.0
(optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEEiNS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_SK_T0_T1_@Base 1.2.0
- (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEElNS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E0_EEEvT_SK_T0_T1_@Base 1.2.0
- (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEElNS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_SK_T0_T1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEElNS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E0_EEEvT_SK_T0_T1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEElNS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_SK_T0_T1_@Base 1.2.0
(optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIijEESt6vectorIS4_SaIS4_EEEEiNS0_5__ops15_Iter_comp_iterINS2_19IntervalStartSorterIijEEEEEvT_SF_T0_T1_@Base 1.2.0
- (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIimEESt6vectorIS4_SaIS4_EEEElNS0_5__ops15_Iter_comp_iterINS2_19IntervalStartSorterIimEEEEEvT_SF_T0_T1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIimEESt6vectorIS4_SaIS4_EEEElNS0_5__ops15_Iter_comp_iterINS2_19IntervalStartSorterIimEEEEEvT_SF_T0_T1_@Base 1.2.0
_ZSt19__throw_regex_errorNSt15regex_constants10error_typeEPKc@Base 1.2.0
(optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP9mem_aln_tSt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbRKS2_SB_EEEEvT_SF_SF_SF_T0_@Base 1.2.0
(optional)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP9mem_aln_tSt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_comp_iterIPFbRKS2_SB_EEEEvT_T0_@Base 1.2.0
- (optional)_ZSt4findIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEES7_ET_SE_SE_RKT0_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZSt4findIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEES7_ET_SE_SE_RKT0_@Base 1.2.0
_ZSt4swapIN12aho_corasick7ahoemitIcEEENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS7_ESt18is_move_assignableIS7_EEE5valueEvE4typeERS7_SH_@Base 1.2.0
(optional)_ZSt4swapIN6SeqLib11PlottedReadEENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS6_ESt18is_move_assignableIS6_EEE5valueEvE4typeERS6_SG_@Base 1.2.0
- (optional)_ZSt4swapIN6SeqLib9TIntervalIimEEENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS7_ESt18is_move_assignableIS7_EEE5valueEvE4typeERS7_SH_@Base 1.2.0
- (optional)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZSt4swapIN6SeqLib9TIntervalIimEEENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS7_ESt18is_move_assignableIS7_EEE5valueEvE4typeERS7_SH_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_@Base 1.2.0
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_S9_@Base 1.2.0
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_@Base 1.2.0
(optional)_ZTI10idx_delete@Base 1.2.0
@@ -647,6 +712,7 @@
(optional)_ZTI14htsFile_delete@Base 1.2.0
(optional)_ZTI14hts_itr_delete@Base 1.2.0
(optional)_ZTIN6SeqLib11free_deleteE@Base 1.2.0
+ _ZTIN9__gnu_cxx7__mutexE@Base 1.2.0+dfsg-6
_ZTINSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb0EEE@Base 1.2.0
_ZTINSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEE@Base 1.2.0
_ZTINSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1ELb0EEE@Base 1.2.0
@@ -663,25 +729,38 @@
_ZTINSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1EEE@Base 1.2.0
_ZTINSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb1ELb0EEE@Base 1.2.0
_ZTINSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb1ELb1EEE@Base 1.2.0
- (optional)_ZTISt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
(optional)_ZTISt19_Sp_make_shared_tag@Base 1.2.0
- (optional)_ZTISt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTISt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
_ZTS10idx_delete@Base 1.2.0
_ZTS14bam_hdr_delete@Base 1.2.0
_ZTS14htsFile_delete@Base 1.2.0
_ZTS14hts_itr_delete@Base 1.2.0
_ZTSN6SeqLib11free_deleteE@Base 1.2.0
+ _ZTSN9__gnu_cxx7__mutexE@Base 1.2.0+dfsg-6
_ZTSNSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb0EEE@Base 1.2.0
_ZTSNSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEE@Base 1.2.0
_ZTSNSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1ELb0EEE@Base 1.2.0
@@ -698,31 +777,53 @@
_ZTSNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1EEE@Base 1.2.0
_ZTSNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb1ELb0EEE@Base 1.2.0
_ZTSNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb1ELb1EEE@Base 1.2.0
- (optional)_ZTSSt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTSSt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTSSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTSSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTSSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTSSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTSSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTSSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTSSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
+#MISSING: 1.2.0+dfsg-6# (optional)_ZTSSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-6
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dh_shlibdeps -a -a
dpkg-shlibdeps: warning: symbol kseq_read used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol err_xopen_core used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwa_verbose used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwt_gen_cnt_table used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol is_bwt used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bns_destroy used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol err_fflush used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol kseq_init used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwt_bwtupdate_core used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwa_idx_load used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libseqlib2' in '../libseqlib2_1.2.0+dfsg-6_armhf.deb'.
dpkg-deb: building package 'libseqlib2-dbgsym' in '../libseqlib2-dbgsym_1.2.0+dfsg-6_armhf.deb'.
dpkg-deb: building package 'libseqlib-dev' in '../libseqlib-dev_1.2.0+dfsg-6_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libseqlib_1.2.0+dfsg-6_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-09-06T05:33:19Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libseqlib_1.2.0+dfsg-6_armhf.changes:
-------------------------------------
Format: 1.8
Date: Tue, 31 Aug 2021 21:30:32 +0200
Source: libseqlib
Binary: libseqlib-dev libseqlib2 libseqlib2-dbgsym
Architecture: armhf
Version: 1.2.0+dfsg-6
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libseqlib-dev - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat
libseqlib2 - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat
Changes:
libseqlib (1.2.0+dfsg-6) unstable; urgency=medium
.
* Really fix watch file
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Files:
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libseqlib-dev_1.2.0+dfsg-6_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 197228 bytes: control archive=1752 bytes.
1334 bytes, 25 lines control
1735 bytes, 25 lines md5sums
Package: libseqlib-dev
Source: libseqlib
Version: 1.2.0+dfsg-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1082
Depends: libseqlib2 (= 1.2.0+dfsg-6), libfml-dev, libhts-dev, libjsoncpp-dev, libssw-dev, zlib1g-dev, libbwa-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/walaj/SeqLib
Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
.
This package contains the header files and static library.
drwxr-xr-x root/root 0 2021-08-31 19:30 ./
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/include/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/include/SeqLib/
-rw-r--r-- root/root 3874 2021-08-31 19:30 ./usr/include/SeqLib/BFC.h
-rw-r--r-- root/root 7129 2021-01-07 04:18 ./usr/include/SeqLib/BWAWrapper.h
-rw-r--r-- root/root 3605 2021-08-31 19:30 ./usr/include/SeqLib/BamHeader.h
-rw-r--r-- root/root 9275 2021-01-07 04:18 ./usr/include/SeqLib/BamReader.h
-rw-r--r-- root/root 32406 2021-08-31 19:30 ./usr/include/SeqLib/BamRecord.h
-rw-r--r-- root/root 1979 2021-01-07 04:18 ./usr/include/SeqLib/BamWalker.h
-rw-r--r-- root/root 3473 2021-01-07 04:18 ./usr/include/SeqLib/BamWriter.h
-rw-r--r-- root/root 1170 2021-01-07 04:18 ./usr/include/SeqLib/FastqReader.h
-rw-r--r-- root/root 4281 2021-08-31 19:30 ./usr/include/SeqLib/FermiAssembler.h
-rw-r--r-- root/root 6354 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegion.h
-rw-r--r-- root/root 19869 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegionCollection.cpp
-rw-r--r-- root/root 11804 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegionCollection.h
-rw-r--r-- root/root 7320 2021-01-07 04:18 ./usr/include/SeqLib/IntervalTree.h
-rw-r--r-- root/root 17538 2021-01-07 04:18 ./usr/include/SeqLib/ReadFilter.h
-rw-r--r-- root/root 1387 2021-08-31 19:30 ./usr/include/SeqLib/RefGenome.h
-rw-r--r-- root/root 3832 2021-01-07 04:18 ./usr/include/SeqLib/SeqLibCommon.h
-rw-r--r-- root/root 4176 2021-01-07 04:18 ./usr/include/SeqLib/SeqLibUtils.h
-rw-r--r-- root/root 2455 2021-01-07 04:18 ./usr/include/SeqLib/SeqPlot.h
-rw-r--r-- root/root 577 2021-01-07 04:18 ./usr/include/SeqLib/ThreadPool.h
-rw-r--r-- root/root 2421 2021-01-07 04:18 ./usr/include/SeqLib/UnalignedSequence.h
-rw-r--r-- root/root 17078 2021-01-07 04:18 ./usr/include/SeqLib/aho_corasick.hpp
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/lib/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 915010 2021-08-31 19:30 ./usr/lib/arm-linux-gnueabihf/libseqlib.a
lrwxrwxrwx root/root 0 2021-08-31 19:30 ./usr/lib/arm-linux-gnueabihf/libseqlib.so -> libseqlib.so.2.0.0
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 301 2021-08-31 19:30 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libseqlib.pc
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/share/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/share/doc/libseqlib-dev/
-rw-r--r-- root/root 1895 2021-08-31 19:30 ./usr/share/doc/libseqlib-dev/changelog.Debian.gz
-rw-r--r-- root/root 2658 2021-08-31 19:30 ./usr/share/doc/libseqlib-dev/copyright
libseqlib2-dbgsym_1.2.0+dfsg-6_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 2265328 bytes: control archive=552 bytes.
409 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libseqlib2-dbgsym
Source: libseqlib
Version: 1.2.0+dfsg-6
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2331
Depends: libseqlib2 (= 1.2.0+dfsg-6)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libseqlib2
Build-Ids: 1cdd3b40b845c822523f54fbd251785f318b6691
drwxr-xr-x root/root 0 2021-08-31 19:30 ./
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/lib/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/lib/debug/.build-id/1c/
-rw-r--r-- root/root 2376520 2021-08-31 19:30 ./usr/lib/debug/.build-id/1c/dd3b40b845c822523f54fbd251785f318b6691.debug
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/share/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-08-31 19:30 ./usr/share/doc/libseqlib2-dbgsym -> libseqlib2
libseqlib2_1.2.0+dfsg-6_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 138908 bytes: control archive=7232 bytes.
1330 bytes, 23 lines control
229 bytes, 3 lines md5sums
39 bytes, 1 lines shlibs
67068 bytes, 643 lines symbols
67 bytes, 2 lines triggers
Package: libseqlib2
Source: libseqlib
Version: 1.2.0+dfsg-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 484
Depends: libc6 (>= 2.4), libfml0 (>= 0.1+git20190320.b499514), libgcc-s1 (>= 3.5), libhts3 (>= 1.10), libjsoncpp24 (>= 1.9.4), libssw0 (>= 1.1), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/walaj/SeqLib
Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
drwxr-xr-x root/root 0 2021-08-31 19:30 ./
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/lib/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2021-08-31 19:30 ./usr/lib/arm-linux-gnueabihf/libseqlib.so.2 -> libseqlib.so.2.0.0
-rw-r--r-- root/root 411552 2021-08-31 19:30 ./usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/share/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-08-31 19:30 ./usr/share/doc/libseqlib2/
-rw-r--r-- root/root 1895 2021-08-31 19:30 ./usr/share/doc/libseqlib2/changelog.Debian.gz
-rw-r--r-- root/root 2658 2021-08-31 19:30 ./usr/share/doc/libseqlib2/copyright
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| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 38124
Build-Time: 324
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 303
Job: libseqlib_1.2.0+dfsg-6
Machine Architecture: armhf
Package: libseqlib
Package-Time: 674
Source-Version: 1.2.0+dfsg-6
Space: 38124
Status: successful
Version: 1.2.0+dfsg-6
--------------------------------------------------------------------------------
Finished at 2021-09-06T05:33:19Z
Build needed 00:11:14, 38124k disc space