libseqlib →
1.2.0+dfsg-5 →
armhf → 2021-08-27 06:11:14
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| libseqlib 1.2.0+dfsg-5 (armhf) Fri, 27 Aug 2021 06:03:18 +0000 |
+==============================================================================+
Package: libseqlib
Version: 1.2.0+dfsg-5
Source Version: 1.2.0+dfsg-5
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-f61ba827-4c72-466e-846d-61b672428d80' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/libseqlib-qQ5zPS/resolver-ZEmE79' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.3 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.3 MB]
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Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libseqlib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libseqlib.git
Please use:
git clone https://salsa.debian.org/med-team/libseqlib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 167 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main libseqlib 1.2.0+dfsg-5 (dsc) [2246 B]
Get:2 http://172.17.0.1/private bookworm-staging/main libseqlib 1.2.0+dfsg-5 (tar) [149 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main libseqlib 1.2.0+dfsg-5 (diff) [15.3 kB]
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I: NOTICE: Log filtering will replace 'build/libseqlib-qQ5zPS/libseqlib-1.2.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libseqlib-qQ5zPS' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
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Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev, libbz2-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev, libbz2-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Install main build dependencies (apt-based resolver)
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Installing build dependencies
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Building dependency tree...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbrotli1 libbwa-dev
libbz2-dev libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl
libdeflate-dev libdeflate0 libelf1 libexpat1
libfile-stripnondeterminism-perl libfml-dev libfml0 libglib2.0-0 libhts-dev
libhts3 libicu67 libjsoncpp-dev libjsoncpp24 liblzma-dev libmagic-mgc
libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib
libpython3.9-minimal libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1
libssw-dev libssw0 libsub-override-perl libtool libuchardet0 libxml2 m4
man-db media-types pkg-config pkg-kde-tools po-debconf python3
python3-minimal python3.9 python3.9-minimal sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff samtools libcurl4-doc libgnutls28-dev
libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev liblzma-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser cdbs libmail-box-perl python3-doc python3-tk python3-venv
python3.9-venv python3.9-doc binfmt-support
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs publicsuffix libltdl-dev
libwww-perl libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbrotli1 libbwa-dev
libbz2-dev libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl
libdeflate-dev libdeflate0 libelf1 libexpat1
libfile-stripnondeterminism-perl libfml-dev libfml0 libglib2.0-0 libhts-dev
libhts3 libicu67 libjsoncpp-dev libjsoncpp24 liblzma-dev libmagic-mgc
libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib
libpython3.9-minimal libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1
libssw-dev libssw0 libsub-override-perl libtool libuchardet0 libxml2 m4
man-db media-types pkg-config pkg-kde-tools po-debconf python3
python3-minimal python3.9 python3.9-minimal sbuild-build-depends-main-dummy
sensible-utils zlib1g-dev
0 upgraded, 67 newly installed, 0 to remove and 30 not upgraded.
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Get:49 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
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Get:56 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
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Get:66 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf pkg-kde-tools all 0.15.32 [96.7 kB]
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Processing triggers for libc-bin (2.31-13+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-13+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1+rpi1 base-passwd_3.5.51 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 d-shlibs_0.99 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.77 debhelper_13.4.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2+rpi1 libblkid1_2.36.1-8 libbrotli1_1.0.9-2+b1 libbwa-dev_0.7.17-6 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-13+rpi1 libc-dev-bin_2.31-13+rpi1 libc6_2.31-13+rpi1 libc6-dev_2.31-13+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.46.2-2 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2+rpi1 libctf0_2.35.2-2+rpi1 libcurl3-gnutls_7.74.0-1.3 libcurl4-gnutls-dev_7.74.0-1.3 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.4.1 libdeflate-dev_1.7-2 libdeflate0_1.7-2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.2.10-2 libext2fs2_1.46.2-2 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libfml-dev_0.1+git20190320.b499514-1+rpi1 libfml0_0.1+git20190320.b499514-1+rpi1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libglib2.0-0_2.68.4-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-6 libhogweed6_3.7.3-1 libhts-dev_1.11-4 libhts3_1.11-4 libicu67_67.1-7 libidn2-0_2.3.0-5 libisl23_0.23-1 libjsoncpp-dev_1.9.4-4 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libksba8_1.5.0-3 libldap-2.4-2_2.4.57+dfsg-3 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpdec3_2.5.1-1+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4+deb11u1 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.2-3 libpython3.9-minimal_3.9.2-1+rpi1 libpython3.9-stdlib_3.9.2-1+rpi1 libreadline8_8.1-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-8 libsqlite3-0_3.34.1-3 libss2_1.46.2-2 libssh2-1_1.9.0-3 libssl1.1_1.1.1k-1 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.3-6+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-2 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xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: libseqlib
Binary: libseqlib2, libseqlib-dev
Architecture: any
Version: 1.2.0+dfsg-5
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/walaj/SeqLib
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/libseqlib
Vcs-Git: https://salsa.debian.org/med-team/libseqlib.git
Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev, libbz2-dev
Package-List:
libseqlib-dev deb libdevel optional arch=any
libseqlib2 deb libs optional arch=any
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.iY6cnkLJ/trustedkeys.kbx': General error
gpgv: Signature made Sun Aug 22 07:20:58 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libseqlib_1.2.0+dfsg-5.dsc
dpkg-source: info: extracting libseqlib in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libseqlib_1.2.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking libseqlib_1.2.0+dfsg-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libs.patch
dpkg-source: info: applying adapt_to_debian_fermi-lite.patch
dpkg-source: info: applying fix_fermi-lite_usage.patch
dpkg-source: info: applying fix_htslib_usage.patch
dpkg-source: info: applying fml_include_path.patch
dpkg-source: info: applying dynamic_lib.patch
dpkg-source: info: applying use_debian_packaged_jsoncpp.patch
dpkg-source: info: applying use_debian_packaged_ssw.patch
dpkg-source: info: applying pkg-config.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=e040c44591bf400793155c77e2e04554
JOURNAL_STREAM=8:7708138
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-f61ba827-4c72-466e-846d-61b672428d80
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c57542
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package libseqlib
dpkg-buildpackage: info: source version 1.2.0+dfsg-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with pkgkde_symbolshelper
dh_clean
debian/rules binary-arch
dh binary-arch --with pkgkde_symbolshelper
dh_update_autotools_config -a
dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac,
libtoolize: and rerunning libtoolize and aclocal.
libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT'
configure.ac:17: installing './compile'
configure.ac:19: installing './config.guess'
configure.ac:19: installing './config.sub'
configure.ac:4: installing './install-sh'
configure.ac:4: installing './missing'
src/Makefile.am: installing './depcomp'
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of g++... none
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for ranlib... ranlib
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... (cached) ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
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checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for library containing gzopen... -lz
checking for library containing lzma_code... -llzma
checking for library containing BZ2_bzBuffToBuffDecompress... -lbz2
checking for library containing clock_gettime... none required
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for htslib... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/seqtools/Makefile
config.status: creating libseqlib.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make all-recursive
make[2]: Entering directory '/<<PKGBUILDDIR>>'
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FastqReader.lo `test -f 'FastqReader.cpp' || echo './'`FastqReader.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BFC.lo `test -f 'BFC.cpp' || echo './'`BFC.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-ReadFilter.lo `test -f 'ReadFilter.cpp' || echo './'`ReadFilter.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-SeqPlot.lo `test -f 'SeqPlot.cpp' || echo './'`SeqPlot.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-FastqReader.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -fPIC -DPIC -o .libs/libseqlib_la-ReadFilter.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -fPIC -DPIC -o .libs/libseqlib_la-SeqPlot.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -fPIC -DPIC -o .libs/libseqlib_la-BFC.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -o libseqlib_la-FastqReader.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -o libseqlib_la-BFC.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-GenomicRegion.lo `test -f 'GenomicRegion.cpp' || echo './'`GenomicRegion.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -fPIC -DPIC -o .libs/libseqlib_la-GenomicRegion.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-RefGenome.lo `test -f 'RefGenome.cpp' || echo './'`RefGenome.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -fPIC -DPIC -o .libs/libseqlib_la-RefGenome.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -o libseqlib_la-SeqPlot.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -o libseqlib_la-RefGenome.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamWriter.lo `test -f 'BamWriter.cpp' || echo './'`BamWriter.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamWriter.o
In file included from /usr/include/c++/10/vector:72,
from ../SeqLib/ReadFilter.h:7,
from ReadFilter.cpp:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SeqLib::Filter::AbstractRule&}; _Tp = SeqLib::Filter::AbstractRule; _Alloc = std::allocator<SeqLib::Filter::AbstractRule>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<SeqLib::Filter::AbstractRule>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../SeqLib/ReadFilter.h:7,
from ReadFilter.cpp:1:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void SeqLib::Filter::ReadFilter::AddRule(const SeqLib::Filter::AbstractRule&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void SeqLib::Filter::ReadFilterCollection::CheckHasIncluder()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamReader.lo `test -f 'BamReader.cpp' || echo './'`BamReader.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamReader.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -o libseqlib_la-BamWriter.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BWAWrapper.lo `test -f 'BWAWrapper.cpp' || echo './'`BWAWrapper.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -fPIC -DPIC -o .libs/libseqlib_la-BWAWrapper.o
/usr/include/c++/10/bits/stl_vector.h: In constructor ‘SeqLib::Filter::ReadFilterCollection::ReadFilterCollection(const string&, const SeqLib::BamHeader&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from ../SeqLib/BWAWrapper.h:5,
from BWAWrapper.cpp:9:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const mem_aln_t&}; _Tp = mem_aln_t; _Alloc = std::allocator<mem_aln_t>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<mem_aln_t>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from ../SeqLib/BWAWrapper.h:7,
from BWAWrapper.cpp:9:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]’:
/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]’:
/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
1819 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]’:
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from ../SeqLib/BWAWrapper.h:7,
from BWAWrapper.cpp:9:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >; _Distance = int; _Tp = mem_aln_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from ../SeqLib/BWAWrapper.h:7,
from BWAWrapper.cpp:9:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]’:
/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
1662 | __heap_select(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]’:
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1925 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
1937 | std::__heap_select(__first, __middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from ../SeqLib/BWAWrapper.h:5,
from BWAWrapper.cpp:9:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void SeqLib::BWAWrapper::AlignSequence(const string&, const string&, SeqLib::BamRecordVector&, bool, double, int) const’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from ../SeqLib/BWAWrapper.h:7,
from BWAWrapper.cpp:9:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -o libseqlib_la-BamReader.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -o libseqlib_la-BWAWrapper.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -o libseqlib_la-ReadFilter.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -o libseqlib_la-GenomicRegion.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamRecord.lo `test -f 'BamRecord.cpp' || echo './'`BamRecord.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamRecord.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FermiAssembler.lo `test -f 'FermiAssembler.cpp' || echo './'`FermiAssembler.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -fPIC -DPIC -o .libs/libseqlib_la-FermiAssembler.o
In file included from /usr/include/c++/10/vector:72,
from ../SeqLib/BamRecord.h:6,
from BamRecord.cpp:1:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<double> SeqLib::BamRecord::GetSmartDoubleTag(const string&) const’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -o libseqlib_la-BamRecord.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -o libseqlib_la-FermiAssembler.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamHeader.lo `test -f 'BamHeader.cpp' || echo './'`BamHeader.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamHeader.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -o libseqlib_la-BamHeader.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 2:0 -lfml `/usr/bin/pkg-config --libs htslib` `/usr/bin/pkg-config --libs jsoncpp` -lssw -Wl,-z,relro -Wl,-z,now -o libseqlib.la -rpath /usr/lib/arm-linux-gnueabihf libseqlib_la-FastqReader.lo libseqlib_la-BFC.lo libseqlib_la-ReadFilter.lo libseqlib_la-SeqPlot.lo libseqlib_la-GenomicRegion.lo libseqlib_la-RefGenome.lo libseqlib_la-BamWriter.lo libseqlib_la-BamReader.lo libseqlib_la-BWAWrapper.lo libseqlib_la-BamRecord.lo libseqlib_la-FermiAssembler.lo libseqlib_la-BamHeader.lo -lbz2 -llzma -lz -pthread
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/10/crtbeginS.o .libs/libseqlib_la-FastqReader.o .libs/libseqlib_la-BFC.o .libs/libseqlib_la-ReadFilter.o .libs/libseqlib_la-SeqPlot.o .libs/libseqlib_la-GenomicRegion.o .libs/libseqlib_la-RefGenome.o .libs/libseqlib_la-BamWriter.o .libs/libseqlib_la-BamReader.o .libs/libseqlib_la-BWAWrapper.o .libs/libseqlib_la-BamRecord.o .libs/libseqlib_la-FermiAssembler.o .libs/libseqlib_la-BamHeader.o -lfml -lhts -ljsoncpp -lssw -lbz2 -llzma -lz -L/usr/lib/gcc/arm-linux-gnueabihf/10 -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/10/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/crtn.o -g -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -pthread -Wl,-soname -Wl,libseqlib.so.2 -o .libs/libseqlib.so.2.0.0
libtool: link: (cd ".libs" && rm -f "libseqlib.so.2" && ln -s "libseqlib.so.2.0.0" "libseqlib.so.2")
libtool: link: (cd ".libs" && rm -f "libseqlib.so" && ln -s "libseqlib.so.2.0.0" "libseqlib.so")
libtool: link: ar cr .libs/libseqlib.a libseqlib_la-FastqReader.o libseqlib_la-BFC.o libseqlib_la-ReadFilter.o libseqlib_la-SeqPlot.o libseqlib_la-GenomicRegion.o libseqlib_la-RefGenome.o libseqlib_la-BamWriter.o libseqlib_la-BamReader.o libseqlib_la-BWAWrapper.o libseqlib_la-BamRecord.o libseqlib_la-FermiAssembler.o libseqlib_la-BamHeader.o
libtool: link: ranlib .libs/libseqlib.a
libtool: link: ( cd ".libs" && rm -f "libseqlib.la" && ln -s "../libseqlib.la" "libseqlib.la" )
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
make -j4 check VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making check in src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<BUILDDIR>>/libseqlib-1.2.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "mkdir -p lib && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a lib"
mkdir -p lib && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a lib
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
# Trick to get also headers moved by d-shlibmove
cp -a SeqLib debian # note: also GenomicRegionCollection.cpp is really needed by freebayes
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/SeqLib usr/include \
--override s/libfml0-dev/libfml-dev/ \
--override s/libssw0-dev/libssw-dev/ \
src/.libs/libseqlib.so
Library package automatic movement utility
--> libfml-dev package exists.
--> libhts-dev package exists.
--> libjsoncpp-dev package exists.
--> libssw-dev package exists.
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libseqlib2/usr/lib/arm-linux-gnueabihf
mv src/.libs/libseqlib.a debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf
mv src/.libs/libseqlib.so debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/src/.libs/libseqlib.so.2 debian/libseqlib2/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/src/.libs/libseqlib.so.2.0.0 debian/libseqlib2/usr/lib/arm-linux-gnueabihf
PKGDEV=libseqlib-dev
PKGSHL=libseqlib2
install -d -m 755 debian/libseqlib-dev/usr/include
mv debian/SeqLib debian/libseqlib-dev/usr/include
mkdir -p /<<PKGBUILDDIR>>/debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv libseqlib.pc /<<PKGBUILDDIR>>/debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below
dpkg-gensymbols: warning: debian/libseqlib2/DEBIAN/symbols doesn't match completely debian/libseqlib2.symbols
--- debian/libseqlib2.symbols (libseqlib2_1.2.0+dfsg-5_armhf)
+++ dpkg-gensymbolsdwIU66 2021-08-27 06:10:57.967802388 +0000
@@ -15,7 +15,7 @@
_ZN12aho_corasick13interval_treeINS_7ahoemitIcEEE4nodeD2Ev@Base 1.2.0
_ZN6SeqLib10BWAWrapper10SetGapOpenEi@Base 1.2.0
_ZN6SeqLib10BWAWrapper11SetZDropoffEi@Base 1.2.0
- (optional)_ZN6SeqLib10BWAWrapper11seqlib_add1EPK6kseq_tP8bntseq_tPhPlPiS8_PP9bntamb1_t@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZN6SeqLib10BWAWrapper11seqlib_add1EPK6kseq_tP8bntseq_tPhPlPiS8_PP9bntamb1_t@Base 1.2.0
(optional)_ZN6SeqLib10BWAWrapper11seqlib_add1EPK6kseq_tP8bntseq_tPhPxPiS8_PP9bntamb1_t@Base 1.2.0
_ZN6SeqLib10BWAWrapper12SetBandwidthEi@Base 1.2.0
_ZN6SeqLib10BWAWrapper14ConstructIndexERKSt6vectorINS_17UnalignedSequenceESaIS2_EE@Base 1.2.0
@@ -24,7 +24,7 @@
_ZN6SeqLib10BWAWrapper16SetReseedTriggerEf@Base 1.2.0
_ZN6SeqLib10BWAWrapper18SetMismatchPenaltyEi@Base 1.2.0
(optional)_ZN6SeqLib10BWAWrapper18seqlib_add_to_annsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_P9bntann1_tj@Base 1.2.0
- (optional)_ZN6SeqLib10BWAWrapper18seqlib_add_to_annsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_P9bntann1_tm@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZN6SeqLib10BWAWrapper18seqlib_add_to_annsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_P9bntann1_tm@Base 1.2.0
_ZN6SeqLib10BWAWrapper18seqlib_bwt_pac2bwtEPKhi@Base 1.2.0
_ZN6SeqLib10BWAWrapper24Set3primeClippingPenaltyEi@Base 1.2.0
_ZN6SeqLib10BWAWrapper24Set5primeClippingPenaltyEi@Base 1.2.0
@@ -49,12 +49,12 @@
(optional)_ZN6SeqLib13TIntervalTreeIijEC2ERSt6vectorINS_9TIntervalIijEESaIS4_EEjjjjj@Base 1.2.0
(optional)_ZN6SeqLib13TIntervalTreeIijED1Ev@Base 1.2.0
(optional)_ZN6SeqLib13TIntervalTreeIijED2Ev@Base 1.2.0
- (optional)_ZN6SeqLib13TIntervalTreeIimEC1ERKS1_@Base 1.2.0
- (optional)_ZN6SeqLib13TIntervalTreeIimEC1ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.2.0
- (optional)_ZN6SeqLib13TIntervalTreeIimEC2ERKS1_@Base 1.2.0
- (optional)_ZN6SeqLib13TIntervalTreeIimEC2ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.2.0
- (optional)_ZN6SeqLib13TIntervalTreeIimED1Ev@Base 1.2.0
- (optional)_ZN6SeqLib13TIntervalTreeIimED2Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZN6SeqLib13TIntervalTreeIimEC1ERKS1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZN6SeqLib13TIntervalTreeIimEC1ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZN6SeqLib13TIntervalTreeIimEC2ERKS1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZN6SeqLib13TIntervalTreeIimEC2ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZN6SeqLib13TIntervalTreeIimED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZN6SeqLib13TIntervalTreeIimED2Ev@Base 1.2.0
_ZN6SeqLib14FermiAssembler10ClearReadsEv@Base 1.2.0
_ZN6SeqLib14FermiAssembler12ClearContigsEv@Base 1.2.0
_ZN6SeqLib14FermiAssembler12CorrectReadsEv@Base 1.2.0
@@ -80,7 +80,7 @@
_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE13CreateTreeMapEv@Base 1.2.0
(optional)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE14CoordinateSortEv@Base 1.2.0
_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE25MergeOverlappingIntervalsEv@Base 1.2.0
- (optional)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE6ConcatERKS2_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE6ConcatERKS2_@Base 1.2.0
_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.2.0
(optional)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1Ev@Base 1.2.0
_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.2.0
@@ -113,8 +113,8 @@
_ZN6SeqLib6Filter10ReadFilterD1Ev@Base 1.2.0
_ZN6SeqLib6Filter10ReadFilterD2Ev@Base 1.2.0
_ZN6SeqLib6Filter11AhoCorasick12TrieFromFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.2.0
- (optional)_ZN6SeqLib6Filter11AhoCorasickC1Ev@Base 1.2.0
- (optional)_ZN6SeqLib6Filter11AhoCorasickC2Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZN6SeqLib6Filter11AhoCorasickC1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZN6SeqLib6Filter11AhoCorasickC2Ev@Base 1.2.0
(optional)_ZN6SeqLib6Filter11AhoCorasickD1Ev@Base 1.2.0
(optional)_ZN6SeqLib6Filter11AhoCorasickD2Ev@Base 1.2.0
_ZN6SeqLib6Filter12AbstractRule12addMotifRuleERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb@Base 1.2.0
@@ -123,7 +123,9 @@
_ZN6SeqLib6Filter12AbstractRule7isValidERKNS_9BamRecordE@Base 1.2.0
_ZN6SeqLib6Filter12AbstractRule9parseJsonERKN4Json5ValueE@Base 1.2.0
_ZN6SeqLib6Filter12AbstractRuleC1ERKS1_@Base 1.2.0
+ _ZN6SeqLib6Filter12AbstractRuleC1Ev@Base 1.2.0+dfsg-5
_ZN6SeqLib6Filter12AbstractRuleC2ERKS1_@Base 1.2.0
+ _ZN6SeqLib6Filter12AbstractRuleC2Ev@Base 1.2.0+dfsg-5
_ZN6SeqLib6Filter12AbstractRuleD1Ev@Base 1.2.0
_ZN6SeqLib6Filter12AbstractRuleD2Ev@Base 1.2.0
_ZN6SeqLib6Filter15convert_to_boolERKN4Json5ValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.2.0
@@ -200,7 +202,7 @@
_ZN6SeqLiblsERSoRKNS_9BamRecordE@Base 1.2.0
_ZN6SeqLiblsERSoRKNS_9BamWriterE@Base 1.2.0
(optional)_ZN9__gnu_cxx6__stoaIlicJiEEET0_PFT_PKT1_PPS3_DpT2_EPKcS5_PjS9_@Base 1.2.0
- (optional)_ZN9__gnu_cxx6__stoaIlicJiEEET0_PFT_PKT1_PPS3_DpT2_EPKcS5_PmS9_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZN9__gnu_cxx6__stoaIlicJiEEET0_PFT_PKT1_PPS3_DpT2_EPKcS5_PmS9_@Base 1.2.0
_ZNK6SeqLib10BWAWrapper10WriteIndexERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.2.0
_ZNK6SeqLib10BWAWrapper11ChrIDToNameB5cxx11Ei@Base 1.2.0
_ZNK6SeqLib10BWAWrapper12NumSequencesEv@Base 1.2.0
@@ -225,7 +227,7 @@
_ZNK6SeqLib13GenomicRegionltERKS0_@Base 1.2.0
_ZNK6SeqLib13GenomicRegionneERKS0_@Base 1.2.0
(optional)_ZNK6SeqLib13TIntervalTreeIijE15findOverlappingEjjRSt6vectorINS_9TIntervalIijEESaIS4_EE@Base 1.2.0
- (optional)_ZNK6SeqLib13TIntervalTreeIimE15findOverlappingEmmRSt6vectorINS_9TIntervalIimEESaIS4_EE@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNK6SeqLib13TIntervalTreeIimE15findOverlappingEmmRSt6vectorINS_9TIntervalIimEESaIS4_EE@Base 1.2.0
_ZNK6SeqLib14FermiAssembler10GetContigsB5cxx11Ev@Base 1.2.0
_ZNK6SeqLib14FermiAssembler12GetSequencesEv@Base 1.2.0
_ZNK6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE13CountOverlapsERKS1_@Base 1.2.0
@@ -265,21 +267,21 @@
_ZNK6SeqLib9BamRecord27CountBWASecondaryAlignmentsEv@Base 1.2.0
_ZNK6SeqLib9BamRecord6GetTagERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERS6_@Base 1.2.0
_ZNK6SeqLib9BamRecord7GetZTagERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERS6_@Base 1.2.0
- (optional)_ZNK6SeqLib9BamRecord8GetCigarEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNK6SeqLib9BamRecord8GetCigarEv@Base 1.2.0
_ZNK6SeqLib9BamRecord8SequenceB5cxx11Ev@Base 1.2.0
_ZNK6SeqLib9BamRecord9MeanPhredEv@Base 1.2.0
_ZNK6SeqLib9BamWriter10BuildIndexEv@Base 1.2.0
_ZNK6SeqLib9BamWriter11WriteHeaderEv@Base 1.2.0
_ZNK6SeqLib9RefGenome11QueryRegionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii@Base 1.2.0
(optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEjRS7_j@Base 1.2.0
- (optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.2.0
(optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE5countERS7_@Base 1.2.0
(optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEjRS7_j@Base 1.2.0
- (optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.2.0
_ZNKSt5ctypeIcE8do_widenEc@Base 1.2.0
_ZNKSt5ctypeIcE9do_narrowEcc@Base 1.2.0
_ZNKSt7__cxx1112regex_traitsIcE16lookup_classnameIPKcEENS1_10_RegexMaskET_S6_b@Base 1.2.0
- (optional)_ZNKSt7__cxx1112regex_traitsIcE16translate_nocaseEc@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNKSt7__cxx1112regex_traitsIcE16translate_nocaseEc@Base 1.2.0
_ZNKSt7__cxx1112regex_traitsIcE17transform_primaryIPKcEENS_12basic_stringIcSt11char_traitsIcESaIcEEET_SA_@Base 1.2.0
_ZNKSt7__cxx1112regex_traitsIcE18lookup_collatenameIPKcEENS_12basic_stringIcSt11char_traitsIcESaIcEEET_SA_@Base 1.2.0
(optional)_ZNKSt8__detail20_RegexTranslatorBaseINSt7__cxx1112regex_traitsIcEELb0ELb1EE12_M_transformEc@Base 1.2.0
@@ -289,9 +291,9 @@
_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.2.0
_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD2Ev@Base 1.2.0
(optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEjRKj@Base 1.2.0
- (optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.2.0
(optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEjRKj@Base 1.2.0
- (optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.2.0
(optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEED1Ev@Base 1.2.0
(optional)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEED2Ev@Base 1.2.0
(optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIijEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.2.0
@@ -301,64 +303,91 @@
(optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIijEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE9_M_rehashEjRKj@Base 1.2.0
(optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIijEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev@Base 1.2.0
(optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIijEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD2Ev@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE4findERS1_@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev@Base 1.2.0
- (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD2Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE4findERS1_@Base 1.2.0
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(optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvT_S9_@Base 1.2.0
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+ _ZNSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-5
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+ _ZNSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
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+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
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@@ -391,42 +420,78 @@
_ZNSt17_Function_handlerIFbcENSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb1ELb0EEEE9_M_invokeERKSt9_Any_dataOc@Base 1.2.0
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- (optional)_ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
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- (optional)_ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
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- (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
- (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
- (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
- (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
- (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
- (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
- (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
- (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
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+ _ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.2.0+dfsg-5
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+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
+ _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.2.0+dfsg-5
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+ _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
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+ _ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.2.0+dfsg-5
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+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.2.0+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
+ _ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.2.0+dfsg-5
+ _ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.2.0+dfsg-5
+ _ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.2.0+dfsg-5
+ _ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.2.0+dfsg-5
+ _ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.2.0+dfsg-5
+ _ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.2.0
_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.2.0
_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev@Base 1.2.0
_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_ED1Ev@Base 1.2.0
@@ -435,12 +500,12 @@
_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE16_M_push_back_auxIJRKS5_EEEvDpOT_@Base 1.2.0
(optional)_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE16_M_push_back_auxIJS5_EEEvDpOT_@Base 1.2.0
(optional)_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE17_M_reallocate_mapEjb@Base 1.2.0
- (optional)_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE17_M_reallocate_mapEmb@Base 1.2.0
- (optional)_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE9push_backERKS5_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE17_M_reallocate_mapEmb@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt5dequeINSt8__detail9_StateSeqINSt7__cxx1112regex_traitsIcEEEESaIS5_EE9push_backERKS5_@Base 1.2.0
(optional)_ZNSt5dequeIPN12aho_corasick5stateIcEESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_@Base 1.2.0
_ZNSt5dequeIlSaIlEE16_M_push_back_auxIJRKlEEEvDpOT_@Base 1.2.0
- (optional)_ZNSt5stackIlSt5dequeIlSaIlEEEC1IS2_vEEv@Base 1.2.0
- (optional)_ZNSt5stackIlSt5dequeIlSaIlEEEC2IS2_vEEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt5stackIlSt5dequeIlSaIlEEEC1IS2_vEEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt5stackIlSt5dequeIlSaIlEEEC2IS2_vEEv@Base 1.2.0
(optional)_ZNSt6vectorI9mem_aln_tSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 1.2.0
_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
@@ -462,24 +527,24 @@
(optional)_ZNSt6vectorIN6SeqLib9BamRecordESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIN6SeqLib9TIntervalIijEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIN6SeqLib9TIntervalIijEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
- (optional)_ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
- (optional)_ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 1.2.0
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.2.0
- (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE9push_backERKS5_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE9push_backERKS5_@Base 1.2.0
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC1ERKS7_@Base 1.2.0
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 1.2.0
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 1.2.0
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 1.2.0
(optional)_ZNSt6vectorINSt7__cxx1112regex_traitsIcE10_RegexMaskESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorINSt7__cxx119sub_matchIN9__gnu_cxx17__normal_iteratorIPKcNS0_12basic_stringIcSt11char_traitsIcESaIcEEEEEEESaISC_EE14_M_fill_assignEjRKSC_@Base 1.2.0
- (optional)_ZNSt6vectorINSt7__cxx119sub_matchIN9__gnu_cxx17__normal_iteratorIPKcNS0_12basic_stringIcSt11char_traitsIcESaIcEEEEEEESaISC_EE14_M_fill_assignEmRKSC_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt6vectorINSt7__cxx119sub_matchIN9__gnu_cxx17__normal_iteratorIPKcNS0_12basic_stringIcSt11char_traitsIcESaIcEEEEEEESaISC_EE14_M_fill_assignEmRKSC_@Base 1.2.0
_ZNSt6vectorINSt8__detail6_StateIcEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIPN12aho_corasick5stateIcEESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIPN6SeqLib11PlottedReadESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIPcSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 1.2.0
- (optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EE12emplace_backIJS7_EEEvDpOT_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EE12emplace_backIJS7_EEEvDpOT_@Base 1.2.0
(optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EE17_M_realloc_insertIJS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EEC1ERKS9_@Base 1.2.0
(optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EEC2ERKS9_@Base 1.2.0
@@ -497,7 +562,7 @@
(optional)_ZNSt6vectorIdSaIdEE17_M_realloc_insertIJdEEEvN9__gnu_cxx17__normal_iteratorIPdS1_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 1.2.0
(optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.2.0
- (optional)_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base 1.2.0
(optional)_ZNSt7__cxx1110_List_baseIN6SeqLib13GenomicRegionESaIS2_EE8_M_clearEv@Base 1.2.0
_ZNSt7__cxx1111basic_regexIcNS_12regex_traitsIcEEED1Ev@Base 1.2.0
_ZNSt7__cxx1111basic_regexIcNS_12regex_traitsIcEEED2Ev@Base 1.2.0
@@ -510,39 +575,39 @@
(optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EEC1ERKSB_@Base 1.2.0
(optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EEC2ERKSB_@Base 1.2.0
_ZNSt8_Rb_treeIcSt4pairIKcSt10unique_ptrIN12aho_corasick5stateIcEESt14default_deleteIS5_EEESt10_Select1stIS9_ESt4lessIcESaIS9_EE24_M_get_insert_unique_posERS1_@Base 1.2.0
- (optional)_ZNSt8_Rb_treeIcSt4pairIKcSt10unique_ptrIN12aho_corasick5stateIcEESt14default_deleteIS5_EEESt10_Select1stIS9_ESt4lessIcESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt8_Rb_treeIcSt4pairIKcSt10unique_ptrIN12aho_corasick5stateIcEESt14default_deleteIS5_EEESt10_Select1stIS9_ESt4lessIcESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS1_@Base 1.2.0
(optional)_ZNSt8_Rb_treeIlSt4pairIKllESt10_Select1stIS2_ESt4lessIlESaIS2_EE24_M_get_insert_unique_posERS1_@Base 1.2.0
- (optional)_ZNSt8_Rb_treeIlSt4pairIKllESt10_Select1stIS2_ESt4lessIlESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 1.2.0
- (optional)_ZNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0EE13_M_make_rangeEcc@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt8_Rb_treeIlSt4pairIKllESt10_Select1stIS2_ESt4lessIlESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0EE13_M_make_rangeEcc@Base 1.2.0
_ZNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0EE8_M_readyEv@Base 1.2.0
_ZNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0EED1Ev@Base 1.2.0
_ZNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0EED2Ev@Base 1.2.0
_ZNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1EE13_M_make_rangeEcc@Base 1.2.0
- (optional)_ZNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1EE8_M_readyEv@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1EE8_M_readyEv@Base 1.2.0
_ZNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1EED1Ev@Base 1.2.0
_ZNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1EED2Ev@Base 1.2.0
- (optional)_ZNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb1ELb0EE13_M_make_rangeEcc@Base 1.2.0
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- (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEElNS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_SK_T0_T1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEElNS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E0_EEEvT_SK_T0_T1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEElNS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_SK_T0_T1_@Base 1.2.0
(optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIijEESt6vectorIS4_SaIS4_EEEEiNS0_5__ops15_Iter_comp_iterINS2_19IntervalStartSorterIijEEEEEvT_SF_T0_T1_@Base 1.2.0
- (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIimEESt6vectorIS4_SaIS4_EEEElNS0_5__ops15_Iter_comp_iterINS2_19IntervalStartSorterIimEEEEEvT_SF_T0_T1_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIimEESt6vectorIS4_SaIS4_EEEElNS0_5__ops15_Iter_comp_iterINS2_19IntervalStartSorterIimEEEEEvT_SF_T0_T1_@Base 1.2.0
_ZSt19__throw_regex_errorNSt15regex_constants10error_typeEPKc@Base 1.2.0
(optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP9mem_aln_tSt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbRKS2_SB_EEEEvT_SF_SF_SF_T0_@Base 1.2.0
(optional)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP9mem_aln_tSt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_comp_iterIPFbRKS2_SB_EEEEvT_T0_@Base 1.2.0
- (optional)_ZSt4findIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEES7_ET_SE_SE_RKT0_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZSt4findIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEES7_ET_SE_SE_RKT0_@Base 1.2.0
_ZSt4swapIN12aho_corasick7ahoemitIcEEENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS7_ESt18is_move_assignableIS7_EEE5valueEvE4typeERS7_SH_@Base 1.2.0
(optional)_ZSt4swapIN6SeqLib11PlottedReadEENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS6_ESt18is_move_assignableIS6_EEE5valueEvE4typeERS6_SG_@Base 1.2.0
- (optional)_ZSt4swapIN6SeqLib9TIntervalIimEEENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS7_ESt18is_move_assignableIS7_EEE5valueEvE4typeERS7_SH_@Base 1.2.0
- (optional)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZSt4swapIN6SeqLib9TIntervalIimEEENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS7_ESt18is_move_assignableIS7_EEE5valueEvE4typeERS7_SH_@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_@Base 1.2.0
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_S9_@Base 1.2.0
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_@Base 1.2.0
(optional)_ZTI10idx_delete@Base 1.2.0
@@ -647,6 +712,7 @@
(optional)_ZTI14htsFile_delete@Base 1.2.0
(optional)_ZTI14hts_itr_delete@Base 1.2.0
(optional)_ZTIN6SeqLib11free_deleteE@Base 1.2.0
+ _ZTIN9__gnu_cxx7__mutexE@Base 1.2.0+dfsg-5
_ZTINSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb0EEE@Base 1.2.0
_ZTINSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEE@Base 1.2.0
_ZTINSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1ELb0EEE@Base 1.2.0
@@ -663,25 +729,38 @@
_ZTINSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1EEE@Base 1.2.0
_ZTINSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb1ELb0EEE@Base 1.2.0
_ZTINSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb1ELb1EEE@Base 1.2.0
- (optional)_ZTISt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTISt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
(optional)_ZTISt19_Sp_make_shared_tag@Base 1.2.0
- (optional)_ZTISt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTISt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTISt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
_ZTS10idx_delete@Base 1.2.0
_ZTS14bam_hdr_delete@Base 1.2.0
_ZTS14htsFile_delete@Base 1.2.0
_ZTS14hts_itr_delete@Base 1.2.0
_ZTSN6SeqLib11free_deleteE@Base 1.2.0
+ _ZTSN9__gnu_cxx7__mutexE@Base 1.2.0+dfsg-5
_ZTSNSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb0EEE@Base 1.2.0
_ZTSNSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEE@Base 1.2.0
_ZTSNSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1ELb0EEE@Base 1.2.0
@@ -698,31 +777,53 @@
_ZTSNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb0ELb1EEE@Base 1.2.0
_ZTSNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb1ELb0EEE@Base 1.2.0
_ZTSNSt8__detail15_BracketMatcherINSt7__cxx1112regex_traitsIcEELb1ELb1EEE@Base 1.2.0
- (optional)_ZTSSt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTSSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTSSt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTSSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTSSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTSSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTSSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTSSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTSSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTSSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTSSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTSSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTSSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
+ _ZTSSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.2.0+dfsg-5
+#MISSING: 1.2.0+dfsg-5# (optional)_ZTSSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
_ZTSSt19_Sp_make_shared_tag@Base 1.2.0
- (optional)_ZTSSt23_Sp_counted_ptr_inplaceINSt8__detail4_NFAINSt7__cxx1112regex_traitsIcEEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTVSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTVSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
- (optional)_ZTVSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.2.0
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_ZZNKSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb0EEclEcE5__nul@Base 1.2.0
@@ -735,10 +836,10 @@
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_ZZNSt19_Sp_make_shared_tag5_S_tiEvE5__tag@Base 1.2.0
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- (optional)_ZZNSt8__detail9_CompilerINSt7__cxx1112regex_traitsIcEEE18_M_expression_termILb0ELb1EEEbRSt4pairIbcERNS_15_BracketMatcherIS3_XT_EXT0_EEEENKUlcE_clEc@Base 1.2.0
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+#MISSING: 1.2.0+dfsg-5# (optional)_ZZNSt8__detail9_CompilerINSt7__cxx1112regex_traitsIcEEE18_M_expression_termILb1ELb1EEEbRSt4pairIbcERNS_15_BracketMatcherIS3_XT_EXT0_EEEENKUlvE0_clEv@Base 1.2.0
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: symbol bns_destroy used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwa_idx_load used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol err_xopen_core used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol err_fwrite used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol nst_nt4_table used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwt_bwtupdate_core used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bns_dump used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwt_dump_bwt used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwa_idx_destroy used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol mem_reg2aln used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libseqlib2-dbgsym' in '../libseqlib2-dbgsym_1.2.0+dfsg-5_armhf.deb'.
dpkg-deb: building package 'libseqlib2' in '../libseqlib2_1.2.0+dfsg-5_armhf.deb'.
dpkg-deb: building package 'libseqlib-dev' in '../libseqlib-dev_1.2.0+dfsg-5_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../libseqlib_1.2.0+dfsg-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-08-27T06:11:07Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libseqlib_1.2.0+dfsg-5_armhf.changes:
-------------------------------------
Format: 1.8
Date: Sun, 22 Aug 2021 09:18:27 +0200
Source: libseqlib
Binary: libseqlib-dev libseqlib2 libseqlib2-dbgsym
Architecture: armhf
Version: 1.2.0+dfsg-5
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libseqlib-dev - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat
libseqlib2 - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat
Changes:
libseqlib (1.2.0+dfsg-5) unstable; urgency=medium
.
* Fix watchfile to detect new versions on github (routine-update)
* Standards-Version: 4.6.0 (routine-update)
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Files:
b6f0b93248912a7c58677cd107742e21 197012 libdevel optional libseqlib-dev_1.2.0+dfsg-5_armhf.deb
af587316fce6e60be4f87104f6df46b3 2265416 debug optional libseqlib2-dbgsym_1.2.0+dfsg-5_armhf.deb
2066c2a0e57241522ef70dd0e3294178 138776 libs optional libseqlib2_1.2.0+dfsg-5_armhf.deb
e4ac963679fd980092b71d5428a024ef 7264 science optional libseqlib_1.2.0+dfsg-5_armhf.buildinfo
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: libseqlib
Binary: libseqlib-dev libseqlib2 libseqlib2-dbgsym
Architecture: armhf
Version: 1.2.0+dfsg-5
Checksums-Md5:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Fri, 27 Aug 2021 06:11:06 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
adduser (= 3.118),
apt (= 2.2.4),
autoconf (= 2.69-14),
automake (= 1:1.16.3-2),
autopoint (= 0.21-4),
autotools-dev (= 20180224.1+nmu1),
base-files (= 11.1+rpi1),
base-passwd (= 3.5.51),
bash (= 5.1-2),
binutils (= 2.35.2-2+rpi1),
binutils-arm-linux-gnueabihf (= 2.35.2-2+rpi1),
binutils-common (= 2.35.2-2+rpi1),
bsdextrautils (= 2.37.2-1),
bsdutils (= 1:2.36.1-8),
build-essential (= 12.9),
bzip2 (= 1.0.8-4),
coreutils (= 8.32-4),
cpp (= 4:10.2.1-1+rpi1),
cpp-10 (= 10.2.1-6+rpi1),
d-shlibs (= 0.99),
dash (= 0.5.11+git20200708+dd9ef66-5),
debconf (= 1.5.77),
debhelper (= 13.4.1),
debianutils (= 4.11.2),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.12.0-1),
diffutils (= 1:3.7-5),
dirmngr (= 2.2.27-2),
dpkg (= 1.20.9+rpi1),
dpkg-dev (= 1.20.9+rpi1),
dwz (= 0.14-1),
file (= 1:5.39-3),
findutils (= 4.8.0-1),
g++ (= 4:10.2.1-1+rpi1),
g++-10 (= 10.2.1-6+rpi1),
gcc (= 4:10.2.1-1+rpi1),
gcc-10 (= 10.2.1-6+rpi1),
gcc-10-base (= 10.2.1-6+rpi1),
gettext (= 0.21-4),
gettext-base (= 0.21-4),
gnupg (= 2.2.27-2),
gnupg-l10n (= 2.2.27-2),
gnupg-utils (= 2.2.27-2),
gpg (= 2.2.27-2),
gpg-agent (= 2.2.27-2),
gpg-wks-client (= 2.2.27-2),
gpg-wks-server (= 2.2.27-2),
gpgconf (= 2.2.27-2),
gpgsm (= 2.2.27-2),
gpgv (= 2.2.27-2),
grep (= 3.6-1),
groff-base (= 1.22.4-6),
gzip (= 1.10-4),
hostname (= 3.23),
init-system-helpers (= 1.60),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-10),
libapt-pkg6.0 (= 2.2.4),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 10.2.1-6+rpi1),
libassuan0 (= 2.5.3-7.1),
libatomic1 (= 10.2.1-6+rpi1),
libattr1 (= 1:2.4.48-6),
libaudit-common (= 1:3.0-2),
libaudit1 (= 1:3.0-2),
libbinutils (= 2.35.2-2+rpi1),
libblkid1 (= 2.36.1-8),
libbrotli1 (= 1.0.9-2+b1),
libbwa-dev (= 0.7.17-6),
libbz2-1.0 (= 1.0.8-4),
libbz2-dev (= 1.0.8-4),
libc-bin (= 2.31-13+rpi1),
libc-dev-bin (= 2.31-13+rpi1),
libc6 (= 2.31-13+rpi1),
libc6-dev (= 2.31-13+rpi1),
libcap-ng0 (= 0.7.9-2.2+b1),
libcc1-0 (= 10.2.1-6+rpi1),
libcom-err2 (= 1.46.2-2),
libcrypt-dev (= 1:4.4.18-4),
libcrypt1 (= 1:4.4.18-4),
libctf-nobfd0 (= 2.35.2-2+rpi1),
libctf0 (= 2.35.2-2+rpi1),
libcurl3-gnutls (= 7.74.0-1.3),
libcurl4-gnutls-dev (= 7.74.0-1.3),
libdb5.3 (= 5.3.28+dfsg1-0.8),
libdebconfclient0 (= 0.260),
libdebhelper-perl (= 13.4.1),
libdeflate-dev (= 1.7-2),
libdeflate0 (= 1.7-2),
libdpkg-perl (= 1.20.9+rpi1),
libelf1 (= 0.185-2),
libexpat1 (= 2.2.10-2),
libffi7 (= 3.3-6),
libfile-stripnondeterminism-perl (= 1.12.0-1),
libfml-dev (= 0.1+git20190320.b499514-1+rpi1),
libfml0 (= 0.1+git20190320.b499514-1+rpi1),
libgcc-10-dev (= 10.2.1-6+rpi1),
libgcc-s1 (= 10.2.1-6+rpi1),
libgcrypt20 (= 1.8.7-6),
libgdbm-compat4 (= 1.19-2),
libgdbm6 (= 1.19-2),
libglib2.0-0 (= 2.68.4-1),
libgmp10 (= 2:6.2.1+dfsg-1),
libgnutls30 (= 3.7.1-5),
libgomp1 (= 10.2.1-6+rpi1),
libgpg-error0 (= 1.38-2),
libgssapi-krb5-2 (= 1.18.3-6),
libhogweed6 (= 3.7.3-1),
libhts-dev (= 1.11-4),
libhts3 (= 1.11-4),
libicu67 (= 67.1-7),
libidn2-0 (= 2.3.0-5),
libisl23 (= 0.23-1),
libjsoncpp-dev (= 1.9.4-4),
libjsoncpp24 (= 1.9.4-4),
libk5crypto3 (= 1.18.3-6),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.18.3-6),
libkrb5support0 (= 1.18.3-6),
libksba8 (= 1.5.0-3),
libldap-2.4-2 (= 2.4.57+dfsg-3),
liblz4-1 (= 1.9.3-2),
liblzma-dev (= 5.2.5-2),
liblzma5 (= 5.2.5-2),
libmagic-mgc (= 1:5.39-3),
libmagic1 (= 1:5.39-3),
libmount1 (= 2.36.1-8),
libmpc3 (= 1.2.0-1),
libmpdec3 (= 2.5.1-1+rpi1),
libmpfr6 (= 4.1.0-3),
libncursesw6 (= 6.2+20201114-2),
libnettle8 (= 3.7.3-1),
libnghttp2-14 (= 1.43.0-1),
libnpth0 (= 1.6-3),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit0 (= 0.23.22-1),
libpam-modules (= 1.4.0-9),
libpam-modules-bin (= 1.4.0-9),
libpam-runtime (= 1.4.0-9),
libpam0g (= 1.4.0-9),
libpcre2-8-0 (= 10.36-2),
libpcre3 (= 2:8.39-13),
libperl5.32 (= 5.32.1-4+deb11u1),
libpipeline1 (= 1.5.3-1),
libpsl5 (= 0.21.0-1.2),
libpython3-stdlib (= 3.9.2-3),
libpython3.9-minimal (= 3.9.2-1+rpi1),
libpython3.9-stdlib (= 3.9.2-1+rpi1),
libreadline8 (= 8.1-1),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.27+dfsg-2.1),
libsasl2-modules-db (= 2.1.27+dfsg-2.1),
libseccomp2 (= 2.5.1-1+rpi1),
libselinux1 (= 3.1-3),
libsemanage-common (= 3.1-1),
libsemanage1 (= 3.1-1+b1),
libsepol1 (= 3.1-1),
libsigsegv2 (= 2.13-1),
libsmartcols1 (= 2.36.1-8),
libsqlite3-0 (= 3.34.1-3),
libssh2-1 (= 1.9.0-3),
libssl1.1 (= 1.1.1k-1),
libssw-dev (= 1.1-13),
libssw0 (= 1.1-13),
libstdc++-10-dev (= 10.2.1-6+rpi1),
libstdc++6 (= 10.2.1-6+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 247.3-6+rpi1),
libtasn1-6 (= 4.16.0-2),
libtinfo6 (= 6.2+20201114-2),
libtirpc-common (= 1.3.1-1),
libtirpc-dev (= 1.3.1-1),
libtirpc3 (= 1.3.1-1),
libtool (= 2.4.6-15),
libubsan1 (= 10.2.1-6+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 247.3-6+rpi1),
libunistring2 (= 0.9.10-4),
libuuid1 (= 2.36.1-8),
libxml2 (= 2.9.10+dfsg-6.7),
libxxhash0 (= 0.8.0-2+rpi1),
libzstd1 (= 1.4.8+dfsg-2.1+rpi1),
linux-libc-dev (= 5.10.46-4+rpi1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-5),
make (= 4.3-4.1),
man-db (= 2.9.4-2),
mawk (= 1.3.4.20200120-2),
media-types (= 4.0.0),
ncurses-base (= 6.2+20201114-2),
ncurses-bin (= 6.2+20201114-2),
passwd (= 1:4.8.1-1),
patch (= 2.7.6-7),
perl (= 5.32.1-4+deb11u1),
perl-base (= 5.32.1-4+deb11u1),
perl-modules-5.32 (= 5.32.1-5),
pinentry-curses (= 1.1.0-4),
pkg-config (= 0.29.2-1),
pkg-kde-tools (= 0.15.32),
po-debconf (= 1.0.21+nmu1),
python3 (= 3.9.2-3),
python3-minimal (= 3.9.2-3),
python3.9 (= 3.9.2-1+rpi1),
python3.9-minimal (= 3.9.2-1+rpi1),
raspbian-archive-keyring (= 20120528.2),
readline-common (= 8.1-2),
sed (= 4.7-1),
sensible-utils (= 0.0.14),
sysvinit-utils (= 2.96-7),
tar (= 1.34+dfsg-1),
tzdata (= 2021a-1),
util-linux (= 2.36.1-8),
xz-utils (= 5.2.5-2),
zlib1g (= 1:1.2.11.dfsg-2),
zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1629616707"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libseqlib-dev_1.2.0+dfsg-5_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 197012 bytes: control archive=1752 bytes.
1334 bytes, 25 lines control
1735 bytes, 25 lines md5sums
Package: libseqlib-dev
Source: libseqlib
Version: 1.2.0+dfsg-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1082
Depends: libseqlib2 (= 1.2.0+dfsg-5), libfml-dev, libhts-dev, libjsoncpp-dev, libssw-dev, zlib1g-dev, libbwa-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/walaj/SeqLib
Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
.
This package contains the header files and static library.
drwxr-xr-x root/root 0 2021-08-22 07:18 ./
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/include/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/include/SeqLib/
-rw-r--r-- root/root 3874 2021-08-22 07:18 ./usr/include/SeqLib/BFC.h
-rw-r--r-- root/root 7129 2021-01-07 04:18 ./usr/include/SeqLib/BWAWrapper.h
-rw-r--r-- root/root 3605 2021-08-22 07:18 ./usr/include/SeqLib/BamHeader.h
-rw-r--r-- root/root 9275 2021-01-07 04:18 ./usr/include/SeqLib/BamReader.h
-rw-r--r-- root/root 32406 2021-08-22 07:18 ./usr/include/SeqLib/BamRecord.h
-rw-r--r-- root/root 1979 2021-01-07 04:18 ./usr/include/SeqLib/BamWalker.h
-rw-r--r-- root/root 3473 2021-01-07 04:18 ./usr/include/SeqLib/BamWriter.h
-rw-r--r-- root/root 1170 2021-01-07 04:18 ./usr/include/SeqLib/FastqReader.h
-rw-r--r-- root/root 4281 2021-08-22 07:18 ./usr/include/SeqLib/FermiAssembler.h
-rw-r--r-- root/root 6354 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegion.h
-rw-r--r-- root/root 19869 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegionCollection.cpp
-rw-r--r-- root/root 11804 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegionCollection.h
-rw-r--r-- root/root 7320 2021-01-07 04:18 ./usr/include/SeqLib/IntervalTree.h
-rw-r--r-- root/root 17538 2021-01-07 04:18 ./usr/include/SeqLib/ReadFilter.h
-rw-r--r-- root/root 1387 2021-08-22 07:18 ./usr/include/SeqLib/RefGenome.h
-rw-r--r-- root/root 3832 2021-01-07 04:18 ./usr/include/SeqLib/SeqLibCommon.h
-rw-r--r-- root/root 4176 2021-01-07 04:18 ./usr/include/SeqLib/SeqLibUtils.h
-rw-r--r-- root/root 2455 2021-01-07 04:18 ./usr/include/SeqLib/SeqPlot.h
-rw-r--r-- root/root 577 2021-01-07 04:18 ./usr/include/SeqLib/ThreadPool.h
-rw-r--r-- root/root 2421 2021-01-07 04:18 ./usr/include/SeqLib/UnalignedSequence.h
-rw-r--r-- root/root 17078 2021-01-07 04:18 ./usr/include/SeqLib/aho_corasick.hpp
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/lib/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 915010 2021-08-22 07:18 ./usr/lib/arm-linux-gnueabihf/libseqlib.a
lrwxrwxrwx root/root 0 2021-08-22 07:18 ./usr/lib/arm-linux-gnueabihf/libseqlib.so -> libseqlib.so.2.0.0
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 301 2021-08-22 07:18 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libseqlib.pc
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/share/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/share/doc/libseqlib-dev/
-rw-r--r-- root/root 1869 2021-08-22 07:18 ./usr/share/doc/libseqlib-dev/changelog.Debian.gz
-rw-r--r-- root/root 2658 2021-08-22 07:18 ./usr/share/doc/libseqlib-dev/copyright
libseqlib2-dbgsym_1.2.0+dfsg-5_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 2265416 bytes: control archive=556 bytes.
409 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libseqlib2-dbgsym
Source: libseqlib
Version: 1.2.0+dfsg-5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2331
Depends: libseqlib2 (= 1.2.0+dfsg-5)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libseqlib2
Build-Ids: a5fca686aba438d8d1560e1d119ff958917483eb
drwxr-xr-x root/root 0 2021-08-22 07:18 ./
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/lib/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/lib/debug/.build-id/a5/
-rw-r--r-- root/root 2376516 2021-08-22 07:18 ./usr/lib/debug/.build-id/a5/fca686aba438d8d1560e1d119ff958917483eb.debug
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/share/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-08-22 07:18 ./usr/share/doc/libseqlib2-dbgsym -> libseqlib2
libseqlib2_1.2.0+dfsg-5_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 138776 bytes: control archive=7236 bytes.
1330 bytes, 23 lines control
229 bytes, 3 lines md5sums
39 bytes, 1 lines shlibs
67068 bytes, 643 lines symbols
67 bytes, 2 lines triggers
Package: libseqlib2
Source: libseqlib
Version: 1.2.0+dfsg-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 484
Depends: libc6 (>= 2.4), libfml0 (>= 0.1+git20190320.b499514), libgcc-s1 (>= 3.5), libhts3 (>= 1.10), libjsoncpp24 (>= 1.9.4), libssw0 (>= 1.1), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/walaj/SeqLib
Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
drwxr-xr-x root/root 0 2021-08-22 07:18 ./
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/lib/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2021-08-22 07:18 ./usr/lib/arm-linux-gnueabihf/libseqlib.so.2 -> libseqlib.so.2.0.0
-rw-r--r-- root/root 411552 2021-08-22 07:18 ./usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/share/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-08-22 07:18 ./usr/share/doc/libseqlib2/
-rw-r--r-- root/root 1869 2021-08-22 07:18 ./usr/share/doc/libseqlib2/changelog.Debian.gz
-rw-r--r-- root/root 2658 2021-08-22 07:18 ./usr/share/doc/libseqlib2/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 38124
Build-Time: 139
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 302
Job: libseqlib_1.2.0+dfsg-5
Machine Architecture: armhf
Package: libseqlib
Package-Time: 469
Source-Version: 1.2.0+dfsg-5
Space: 38124
Status: successful
Version: 1.2.0+dfsg-5
--------------------------------------------------------------------------------
Finished at 2021-08-27T06:11:07Z
Build needed 00:07:49, 38124k disk space