Raspbian Package Auto-Building

Build log for libseqlib (1.2.0+dfsg-10) on armhf

libseqlib1.2.0+dfsg-10armhf → 2023-09-15 05:00:44

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04

+==============================================================================+
| libseqlib 1.2.0+dfsg-10 (armhf)              Fri, 15 Sep 2023 04:44:14 +0000 |
+==============================================================================+

Package: libseqlib
Version: 1.2.0+dfsg-10
Source Version: 1.2.0+dfsg-10
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-3c97b05b-e253-4604-b6ff-cb61602c9366' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.6 MB]
Fetched 28.7 MB in 31s (941 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'libseqlib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libseqlib.git
Please use:
git clone https://salsa.debian.org/med-team/libseqlib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 167 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main libseqlib 1.2.0+dfsg-10 (dsc) [2401 B]
Get:2 http://172.17.4.1/private trixie-staging/main libseqlib 1.2.0+dfsg-10 (tar) [149 kB]
Get:3 http://172.17.4.1/private trixie-staging/main libseqlib 1.2.0+dfsg-10 (diff) [15.4 kB]
Fetched 167 kB in 0s (1378 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libseqlib-OxllA1/libseqlib-1.2.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libseqlib-OxllA1' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-cOH2kl/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-cOH2kl/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-cOH2kl/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-cOH2kl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-cOH2kl/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-cOH2kl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-cOH2kl/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-cOH2kl/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2637 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap netbase sensible-utils sgml-base
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 2 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-cOH2kl/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (20.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11771 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev, libjsoncpp-dev, libssw-dev, libbz2-dev
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev, libjsoncpp-dev, libssw-dev, libbz2-dev
dpkg-deb: building package 'sbuild-build-depends-libseqlib-dummy' in '/<<BUILDDIR>>/resolver-cOH2kl/apt_archive/sbuild-build-depends-libseqlib-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-libseqlib-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-cOH2kl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-cOH2kl/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-cOH2kl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-cOH2kl/apt_archive ./ Sources [592 B]
Get:5 copy:/<<BUILDDIR>>/resolver-cOH2kl/apt_archive ./ Packages [670 B]
Fetched 2595 B in 1s (3326 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install libseqlib build dependencies (apt-based resolver)
---------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap netbase sgml-base
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libbrotli1 libbwa-dev
  libbz2-dev libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl
  libdeflate-dev libdeflate0 libelf1 libexpat1
  libfile-stripnondeterminism-perl libfml-dev libfml0 libhts-dev libhts3
  libhtscodecs2 libicu72 libjsoncpp-dev libjsoncpp25 liblzma-dev libmagic-mgc
  libmagic1 libnghttp2-14 libpipeline1 libpkgconf3 libpsl5 libpython3-stdlib
  libpython3.11-minimal libpython3.11-stdlib librtmp1 libssh2-1 libssw-dev
  libssw0 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
  media-types pkg-config pkg-kde-tools pkgconf pkgconf-bin po-debconf python3
  python3-minimal python3.11 python3.11-minimal zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff samtools libcurl4-doc libgnutls28-dev
  libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev liblzma-doc
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser cdbs libmail-box-perl python3-doc python3-tk python3-venv
  python3.11-venv python3.11-doc binfmt-support
Recommended packages:
  curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
  publicsuffix libltdl-dev libwww-perl libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libbrotli1 libbwa-dev
  libbz2-dev libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl
  libdeflate-dev libdeflate0 libelf1 libexpat1
  libfile-stripnondeterminism-perl libfml-dev libfml0 libhts-dev libhts3
  libhtscodecs2 libicu72 libjsoncpp-dev libjsoncpp25 liblzma-dev libmagic-mgc
  libmagic1 libnghttp2-14 libpipeline1 libpkgconf3 libpsl5 libpython3-stdlib
  libpython3.11-minimal libpython3.11-stdlib librtmp1 libssh2-1 libssw-dev
  libssw0 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
  media-types pkg-config pkg-kde-tools pkgconf pkgconf-bin po-debconf python3
  python3-minimal python3.11 python3.11-minimal
  sbuild-build-depends-libseqlib-dummy zlib1g-dev
0 upgraded, 67 newly installed, 0 to remove and 2 not upgraded.
Need to get 28.0 MB of archives.
After this operation, 104 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-cOH2kl/apt_archive ./ sbuild-build-depends-libseqlib-dummy 0.invalid.0 [956 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.2-6 [797 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.2-6 [1679 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.2-1 [26.0 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1668 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.2-6 [572 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.2-1 [9012 B]
Get:10 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.2-1 [26.0 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.22.4-10 [774 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.38.1-5 [78.5 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-2 [1342 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.44-3 [95.3 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.44-3 [41.5 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-12 [156 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-3 [256 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf d-shlibs all 0.104 [18.6 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.6 [81.9 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3~deb12u1 [570 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-12 [1201 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.6 [952 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libbwa-dev armhf 0.7.17-7 [150 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.52.0-1 [60.6 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 7.88.1-10+rpi1 [337 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libcurl4-gnutls-dev armhf 7.88.1-10+rpi1 [419 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libdeflate-dev armhf 1.14-1 [48.1 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libfml0 armhf 0.1+git20190320.b499514-1+rpi1 [68.7 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libfml-dev armhf 0.1+git20190320.b499514-1+rpi1 [80.8 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libhtscodecs2 armhf 1.3.0-4 [59.5 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libhts3 armhf 1.17+ds-1 [374 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.1-0.2 [246 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libhts-dev armhf 1.17+ds-1 [1507 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libjsoncpp25 armhf 1.9.5-6 [64.7 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libjsoncpp-dev armhf 1.9.5-6 [24.5 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libssw0 armhf 1.1-13 [21.0 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libssw-dev armhf 1.1-13 [24.0 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf pkg-kde-tools all 0.15.38 [97.8 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up autopoint (0.21-13) ...
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Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi2 dpkg-dev_1.21.22+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-9+rpi1+deb12u1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.1.38-1+rpi1
Package versions: adduser_3.137 apt_2.6.1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_12.4+rpi1+deb12u1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi2 binutils-arm-linux-gnueabihf_2.40-2+rpi2 binutils-common_2.40-2+rpi2 bsdextrautils_2.38.1-5 bsdutils_1:2.38.1-5 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.2.0-14+rpi1 d-shlibs_0.104 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.6 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.22+rpi1 dpkg-dev_1.21.22+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.2.0-3+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-3+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-12 gettext-base_0.21-12 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-3 libacl1_2.3.1-3 libapt-pkg6.0_2.6.1 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.0.9-1 libbinutils_2.40-2+rpi2 libblkid1_2.38.1-5 libbrotli1_1.0.9-2+b3 libbwa-dev_0.7.17-7 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.36-9+rpi1+deb12u1 libc-dev-bin_2.36-9+rpi1+deb12u1 libc6_2.36-9+rpi1+deb12u1 libc6-dev_2.36-9+rpi1+deb12u1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_12.2.0-14+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2+rpi2 libctf0_2.40-2+rpi2 libcurl3-gnutls_7.88.1-10+rpi1 libcurl4-gnutls-dev_7.88.1-10+rpi1 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.270 libdebhelper-perl_13.11.6 libdeflate-dev_1.14-1 libdeflate0_1.14-1 libdpkg-perl_1.21.22+rpi1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-1 libext2fs2_1.47.0-2 libfakeroot_1.31-1.2 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libfml-dev_0.1+git20190320.b499514-1+rpi1 libfml0_0.1+git20190320.b499514-1+rpi1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.9-2 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-2 libhogweed6_3.8.1-2 libhts-dev_1.17+ds-1 libhts3_1.17+ds-1 libhtscodecs2_1.3.0-4 libicu72_72.1-3 libidn2-0_2.3.3-1+b2 libisl23_0.25-1 libjansson4_2.14-2 libjsoncpp-dev_1.9.5-6 libjsoncpp25_1.9.5-6 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 libksba8_1.6.3-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblz4-1_1.9.4-1+rpi1+b1 liblzma-dev_5.4.1-0.2 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.0.4-2 libmount1_2.38.1-5 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4-4 libnettle8_3.8.1-2 libnghttp2-14_1.52.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-2 libpam-cap_1:2.66-4 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-7 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-1 libpsl5_0.21.2-1 libpython3-stdlib_3.11.2-1 libpython3.11-minimal_3.11.2-6 libpython3.11-stdlib_3.11.2-6 libreadline8_8.2-1.3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.4-1+b2 libsemanage-common_3.5-1 libsemanage2_3.4-1+b2 libsepol1_3.1-1 libsepol2_3.4-2.1 libsmartcols1_2.38.1-5 libsqlite3-0_3.40.1-2 libss2_1.47.0-2 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.9-1 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.12-1~deb12u1+rpi1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.4-4 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.12-1~deb12u1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-5 libxml2_2.9.14+dfsg-1.3~deb12u1 libxxhash0_0.8.1-1 libzstd1_1.5.4+dfsg2-5 linux-libc-dev_6.1.38-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-2 mawk_1.3.4.20200120-3.1 media-types_10.1.0 mount_2.38.1-5 nano_7.2-1 ncurses-base_6.4+20230625-2 ncurses-bin_6.4-4 netbase_6.4 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1 pkg-config_1.8.1-1 pkg-kde-tools_0.15.38 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 python3_3.11.2-1 python3-minimal_3.11.2-1 python3.11_3.11.2-6 python3.11-minimal_3.11.2-6 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libseqlib-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.06-4 tar_1.34+dfsg-1.2 tzdata_2023c-10 usrmerge_37 util-linux_2.38.1-5 util-linux-extra_2.38.1-5 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: Signature made Tue Jul 18 14:32:31 2023 UTC
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libseqlib_1.2.0+dfsg-10.dsc: no acceptable signature found
dpkg-source: info: extracting libseqlib in /<<BUILDDIR>>/libseqlib-1.2.0+dfsg
dpkg-source: info: unpacking libseqlib_1.2.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking libseqlib_1.2.0+dfsg-10.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libs.patch
dpkg-source: info: applying adapt_to_debian_fermi-lite.patch
dpkg-source: info: applying fix_fermi-lite_usage.patch
dpkg-source: info: applying fix_htslib_usage.patch
dpkg-source: info: applying fml_include_path.patch
dpkg-source: info: applying dynamic_lib.patch
dpkg-source: info: applying use_debian_packaged_jsoncpp.patch
dpkg-source: info: applying use_debian_packaged_ssw.patch
dpkg-source: info: applying pkg-config.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-3c97b05b-e253-4604-b6ff-cb61602c9366
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package libseqlib
dpkg-buildpackage: info: source version 1.2.0+dfsg-10
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with pkgkde_symbolshelper
   dh_clean
 debian/rules binary-arch
dh binary-arch --with pkgkde_symbolshelper
   dh_update_autotools_config -a
   dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac,
libtoolize: and rerunning libtoolize and aclocal.
libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT'
configure.ac:6: warning: The macro `AC_CONFIG_HEADER' is obsolete.
configure.ac:6: You should run autoupdate.
./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from...
configure.ac:6: the top level
configure.ac:19: warning: The macro `AC_PROG_LIBTOOL' is obsolete.
configure.ac:19: You should run autoupdate.
aclocal.m4:122: AC_PROG_LIBTOOL is expanded from...
configure.ac:19: the top level
configure.ac:17: installing './compile'
configure.ac:19: installing './config.guess'
configure.ac:19: installing './config.sub'
configure.ac:4: installing './install-sh'
configure.ac:4: installing './missing'
src/Makefile.am: installing './depcomp'
   dh_auto_configure -a
	./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
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checking dependency style of g++... none
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checking dependency style of gcc... none
checking for ranlib... ranlib
checking build system type... arm-unknown-linux-gnueabihf
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checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/seqtools/Makefile
config.status: creating libseqlib.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
   dh_auto_build -a
	make -j4
make[1]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
make  all-recursive
make[2]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
Making all in src
make[3]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg/src'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FastqReader.lo `test -f 'FastqReader.cpp' || echo './'`FastqReader.cpp
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BFC.lo `test -f 'BFC.cpp' || echo './'`BFC.cpp
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-ReadFilter.lo `test -f 'ReadFilter.cpp' || echo './'`ReadFilter.cpp
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-SeqPlot.lo `test -f 'SeqPlot.cpp' || echo './'`SeqPlot.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp  -fPIC -DPIC -o .libs/libseqlib_la-FastqReader.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp  -fPIC -DPIC -o .libs/libseqlib_la-BFC.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp  -fPIC -DPIC -o .libs/libseqlib_la-SeqPlot.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp  -fPIC -DPIC -o .libs/libseqlib_la-ReadFilter.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -o libseqlib_la-FastqReader.o >/dev/null 2>&1
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -o libseqlib_la-BFC.o >/dev/null 2>&1
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-GenomicRegion.lo `test -f 'GenomicRegion.cpp' || echo './'`GenomicRegion.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp  -fPIC -DPIC -o .libs/libseqlib_la-GenomicRegion.o
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-RefGenome.lo `test -f 'RefGenome.cpp' || echo './'`RefGenome.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp  -fPIC -DPIC -o .libs/libseqlib_la-RefGenome.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -o libseqlib_la-SeqPlot.o >/dev/null 2>&1
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -o libseqlib_la-RefGenome.o >/dev/null 2>&1
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamWriter.lo `test -f 'BamWriter.cpp' || echo './'`BamWriter.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp  -fPIC -DPIC -o .libs/libseqlib_la-BamWriter.o
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamReader.lo `test -f 'BamReader.cpp' || echo './'`BamReader.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp  -fPIC -DPIC -o .libs/libseqlib_la-BamReader.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -o libseqlib_la-BamWriter.o >/dev/null 2>&1
In file included from /usr/include/c++/12/vector:70,
                 from ../SeqLib/ReadFilter.h:7,
                 from ReadFilter.cpp:1:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const SeqLib::Filter::AbstractRule&}; _Tp = SeqLib::Filter::AbstractRule; _Alloc = std::allocator<SeqLib::Filter::AbstractRule>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<SeqLib::Filter::AbstractRule>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SeqLib::Filter::AbstractRule; _Alloc = std::allocator<SeqLib::Filter::AbstractRule>]',
    inlined from 'void SeqLib::Filter::ReadFilter::AddRule(const SeqLib::Filter::AbstractRule&)' at ReadFilter.cpp:139:31:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SeqLib::Filter::AbstractRule; _Alloc = std::allocator<SeqLib::Filter::AbstractRule>]',
    inlined from 'void SeqLib::Filter::ReadFilterCollection::CheckHasIncluder()' at ReadFilter.cpp:282:31:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BWAWrapper.lo `test -f 'BWAWrapper.cpp' || echo './'`BWAWrapper.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp  -fPIC -DPIC -o .libs/libseqlib_la-BWAWrapper.o
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SeqLib::Filter::AbstractRule; _Alloc = std::allocator<SeqLib::Filter::AbstractRule>]',
    inlined from 'SeqLib::Filter::ReadFilterCollection::ReadFilterCollection(const std::string&, const SeqLib::BamHeader&)' at ReadFilter.cpp:252:33:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SeqLib::Filter::AbstractRule; _Alloc = std::allocator<SeqLib::Filter::AbstractRule>]',
    inlined from 'SeqLib::Filter::ReadFilterCollection::ReadFilterCollection(const std::string&, const SeqLib::BamHeader&)' at ReadFilter.cpp:259:31:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
                 from ../SeqLib/BWAWrapper.h:5,
                 from BWAWrapper.cpp:9:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mem_aln_t&}; _Tp = mem_aln_t; _Alloc = std::allocator<mem_aln_t>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<mem_aln_t>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/algorithm:61,
                 from ../SeqLib/BWAWrapper.h:7:
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]':
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, vector<mem_aln_t> >; _Distance = int; _Tp = mem_aln_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, vector<mem_aln_t> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -o libseqlib_la-ReadFilter.o >/dev/null 2>&1
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mem_aln_t; _Alloc = std::allocator<mem_aln_t>]',
    inlined from 'void SeqLib::BWAWrapper::AlignSequence(const std::string&, const std::string&, SeqLib::BamRecordVector&, bool, double, int) const' at BWAWrapper.cpp:297:18:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]',
    inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<mem_aln_t*, vector<mem_aln_t> >; _Compare = bool (*)(const mem_aln_t&, const mem_aln_t&)]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from 'void SeqLib::BWAWrapper::AlignSequence(const std::string&, const std::string&, SeqLib::BamRecordVector&, bool, double, int) const' at BWAWrapper.cpp:301:14:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]',
    inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mem_aln_t*, vector<mem_aln_t> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const mem_aln_t&, const mem_aln_t&)>]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<mem_aln_t*, vector<mem_aln_t> >; _Compare = bool (*)(const mem_aln_t&, const mem_aln_t&)]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from 'void SeqLib::BWAWrapper::AlignSequence(const std::string&, const std::string&, SeqLib::BamRecordVector&, bool, double, int) const' at BWAWrapper.cpp:301:14:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<mem_aln_t*, std::vector<mem_aln_t> >' changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -o libseqlib_la-BamReader.o >/dev/null 2>&1
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -o libseqlib_la-BWAWrapper.o >/dev/null 2>&1
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -o libseqlib_la-GenomicRegion.o >/dev/null 2>&1
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamRecord.lo `test -f 'BamRecord.cpp' || echo './'`BamRecord.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp  -fPIC -DPIC -o .libs/libseqlib_la-BamRecord.o
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FermiAssembler.lo `test -f 'FermiAssembler.cpp' || echo './'`FermiAssembler.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp  -fPIC -DPIC -o .libs/libseqlib_la-FermiAssembler.o
In file included from /usr/include/c++/12/vector:70,
                 from ../SeqLib/BamRecord.h:6,
                 from BamRecord.cpp:1:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from 'std::vector<double> SeqLib::BamRecord::GetSmartDoubleTag(const std::string&) const' at BamRecord.cpp:578:15:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from 'std::vector<double> SeqLib::BamRecord::GetSmartDoubleTag(const std::string&) const' at BamRecord.cpp:580:20:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -o libseqlib_la-BamRecord.o >/dev/null 2>&1
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -o libseqlib_la-FermiAssembler.o >/dev/null 2>&1
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamHeader.lo `test -f 'BamHeader.cpp' || echo './'`BamHeader.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp  -fPIC -DPIC -o .libs/libseqlib_la-BamHeader.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -o libseqlib_la-BamHeader.o >/dev/null 2>&1
/bin/bash ../libtool  --tag=CXX   --mode=link g++ -g  -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libseqlib-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 2:0 -lfml `/usr/bin/pkg-config --libs htslib` `/usr/bin/pkg-config --libs jsoncpp` -lssw -Wl,-z,relro -Wl,-z,now -o libseqlib.la -rpath /usr/lib/arm-linux-gnueabihf libseqlib_la-FastqReader.lo libseqlib_la-BFC.lo libseqlib_la-ReadFilter.lo libseqlib_la-SeqPlot.lo libseqlib_la-GenomicRegion.lo libseqlib_la-RefGenome.lo libseqlib_la-BamWriter.lo libseqlib_la-BamReader.lo libseqlib_la-BWAWrapper.lo libseqlib_la-BamRecord.lo libseqlib_la-FermiAssembler.lo libseqlib_la-BamHeader.lo  -lbz2 -llzma -lz  -pthread
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o  .libs/libseqlib_la-FastqReader.o .libs/libseqlib_la-BFC.o .libs/libseqlib_la-ReadFilter.o .libs/libseqlib_la-SeqPlot.o .libs/libseqlib_la-GenomicRegion.o .libs/libseqlib_la-RefGenome.o .libs/libseqlib_la-BamWriter.o .libs/libseqlib_la-BamReader.o .libs/libseqlib_la-BWAWrapper.o .libs/libseqlib_la-BamRecord.o .libs/libseqlib_la-FermiAssembler.o .libs/libseqlib_la-BamHeader.o   -lfml -lhts -ljsoncpp -lssw -lbz2 -llzma -lz -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o  -g -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -pthread -Wl,-soname -Wl,libseqlib.so.2 -o .libs/libseqlib.so.2.0.0
libtool: link: (cd ".libs" && rm -f "libseqlib.so.2" && ln -s "libseqlib.so.2.0.0" "libseqlib.so.2")
libtool: link: (cd ".libs" && rm -f "libseqlib.so" && ln -s "libseqlib.so.2.0.0" "libseqlib.so")
libtool: link: ar cr .libs/libseqlib.a  libseqlib_la-FastqReader.o libseqlib_la-BFC.o libseqlib_la-ReadFilter.o libseqlib_la-SeqPlot.o libseqlib_la-GenomicRegion.o libseqlib_la-RefGenome.o libseqlib_la-BamWriter.o libseqlib_la-BamReader.o libseqlib_la-BWAWrapper.o libseqlib_la-BamRecord.o libseqlib_la-FermiAssembler.o libseqlib_la-BamHeader.o
libtool: link: ranlib .libs/libseqlib.a
libtool: link: ( cd ".libs" && rm -f "libseqlib.la" && ln -s "../libseqlib.la" "libseqlib.la" )
make[3]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg/src'
make[3]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
   dh_auto_test -a
	make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
Making check in src
make[2]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg/src'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install -a
	make -j1 install DESTDIR=/<<BUILDDIR>>/libseqlib-1.2.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
echo "mkdir -p lib && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a lib"
mkdir -p lib && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a lib
make[1]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
   debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
dh_install
# Trick to get also headers moved by d-shlibmove
cp -a SeqLib debian # note: also GenomicRegionCollection.cpp is really needed by freebayes
d-shlibmove --commit \
	    --multiarch \
	    --devunversioned \
	    --exclude-la \
	    --movedev debian/SeqLib usr/include \
	    --override s/libfml0-dev/libfml-dev/ \
	    --override s/libssw0-dev/libssw-dev/ \
                    src/.libs/libseqlib.so
Library package automatic movement utility
 --> libfml-dev package exists.
 --> libhts-dev package exists.
 --> libjsoncpp-dev package exists.
 --> libssw-dev package exists.
 --> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libseqlib2/usr/lib/arm-linux-gnueabihf
mv src/.libs/libseqlib.a debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf
mv src/.libs/libseqlib.so debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/libseqlib-1.2.0+dfsg/src/.libs/libseqlib.so.2 debian/libseqlib2/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/libseqlib-1.2.0+dfsg/src/.libs/libseqlib.so.2.0.0 debian/libseqlib2/usr/lib/arm-linux-gnueabihf
PKGDEV=libseqlib-dev
PKGSHL=libseqlib2
install -d -m 755 debian/libseqlib-dev/usr/include
mv debian/SeqLib debian/libseqlib-dev/usr/include
mkdir -p /<<BUILDDIR>>/libseqlib-1.2.0+dfsg/debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv libseqlib.pc /<<BUILDDIR>>/libseqlib-1.2.0+dfsg/debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
make[1]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.2.0+dfsg'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol nst_nt4_table used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol err_xopen_core used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwt_cal_sa used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwt_dump_sa used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwa_idx_destroy used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol mem_reg2aln used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwa_idx_load used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol kseq_init used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bwt_dump_bwt used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol bns_destroy used by debian/libseqlib2/usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0 found in none of the libraries
dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all)
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'libseqlib-dev' in '../libseqlib-dev_1.2.0+dfsg-10_armhf.deb'.
dpkg-deb: building package 'libseqlib2' in '../libseqlib2_1.2.0+dfsg-10_armhf.deb'.
dpkg-deb: building package 'libseqlib2-dbgsym' in '../libseqlib2-dbgsym_1.2.0+dfsg-10_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../libseqlib_1.2.0+dfsg-10_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../libseqlib_1.2.0+dfsg-10_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-09-15T05:00:36Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


libseqlib_1.2.0+dfsg-10_armhf.changes:
--------------------------------------

Format: 1.8
Date: Tue, 18 Jul 2023 15:56:08 +0200
Source: libseqlib
Binary: libseqlib-dev libseqlib2 libseqlib2-dbgsym
Architecture: armhf
Version: 1.2.0+dfsg-10
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
 libseqlib-dev - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat
 libseqlib2 - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat
Closes: 1015520 1037739
Changes:
 libseqlib (1.2.0+dfsg-10) unstable; urgency=medium
 .
   * d/libseqlib2.symbols.amd64: update.
     Mark symbols optimized out by LTO as optional.  This has the side
     effect of resolving build failures with Gcc 13. (Closes: #1015520, #1037739)
   * d/control: declare compliance to standards version 4.6.2.
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 8aa231c3db19bd0677b47b3cba96076939d36512 194672 libseqlib-dev_1.2.0+dfsg-10_armhf.deb
 ec152741c1519b163c1c5960da074f881c5e7d66 2242408 libseqlib2-dbgsym_1.2.0+dfsg-10_armhf.deb
 968d6ab7babe48276547d2e63717212bf64bcdc4 131104 libseqlib2_1.2.0+dfsg-10_armhf.deb
 aaa97368d8c100882e5a2fa8b3264445c5ec8ef9 7610 libseqlib_1.2.0+dfsg-10_armhf.buildinfo
Checksums-Sha256:
 400da45a86e958b9526650a61677e7d751d7f3465645a7f9a67430fef98f06fa 194672 libseqlib-dev_1.2.0+dfsg-10_armhf.deb
 9e1494efba082bd21c20f3bf5fd964976e58a873bfec344d3c513f153bd272ad 2242408 libseqlib2-dbgsym_1.2.0+dfsg-10_armhf.deb
 8e840b8f1b1cc168d80afbb9ce5dcbcafa6912494fdfcd8179fba68d4e31b403 131104 libseqlib2_1.2.0+dfsg-10_armhf.deb
 6ae2d85e2f65b3a5ea81b92866fe875594ecc79e963d961d0b751f912d407a89 7610 libseqlib_1.2.0+dfsg-10_armhf.buildinfo
Files:
 b1af2ba3cad49516b7c790c0fb4afbe9 194672 libdevel optional libseqlib-dev_1.2.0+dfsg-10_armhf.deb
 bf8fed3f4aa6de53abe1e71f5c66cfbb 2242408 debug optional libseqlib2-dbgsym_1.2.0+dfsg-10_armhf.deb
 9d0fe4dc4e3b4db4e28dc645a7ccd432 131104 libs optional libseqlib2_1.2.0+dfsg-10_armhf.deb
 1ad097c2552a03312552caa7a28912a6 7610 science optional libseqlib_1.2.0+dfsg-10_armhf.buildinfo

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libseqlib-dev_1.2.0+dfsg-10_armhf.deb
-------------------------------------

 new Debian package, version 2.0.
 size 194672 bytes: control archive=1752 bytes.
    1336 bytes,    25 lines      control              
    1735 bytes,    25 lines      md5sums              
 Package: libseqlib-dev
 Source: libseqlib
 Version: 1.2.0+dfsg-10
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1054
 Depends: libseqlib2 (= 1.2.0+dfsg-10), libfml-dev, libhts-dev, libjsoncpp-dev, libssw-dev, zlib1g-dev, libbwa-dev
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/walaj/SeqLib
 Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
  C++ API and command line tool that provides a rapid and user-friendly
  interface to BAM/SAM/CRAM files, global sequence alignment operations
  and sequence assembly. Four C libraries perform core operations in
  SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
  and Fermi for error correction and sequence assembly. Benchmarking
  indicates that SeqLib has lower CPU and memory requirements than leading
  C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
  and assemble reads from a CRAM file and then align with BWA-MEM.
  SeqLib also provides additional capabilities, including chromosome-aware
  interval queries and read plotting. Command line tools are available for
  performing integrated error correction, micro-assemblies and alignment.
  .
  This package contains the header files and static library.

drwxr-xr-x root/root         0 2023-07-18 13:56 ./
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/include/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/include/SeqLib/
-rw-r--r-- root/root      3874 2023-07-18 13:56 ./usr/include/SeqLib/BFC.h
-rw-r--r-- root/root      7129 2021-01-07 04:18 ./usr/include/SeqLib/BWAWrapper.h
-rw-r--r-- root/root      3605 2023-07-18 13:56 ./usr/include/SeqLib/BamHeader.h
-rw-r--r-- root/root      9275 2021-01-07 04:18 ./usr/include/SeqLib/BamReader.h
-rw-r--r-- root/root     32406 2023-07-18 13:56 ./usr/include/SeqLib/BamRecord.h
-rw-r--r-- root/root      1979 2021-01-07 04:18 ./usr/include/SeqLib/BamWalker.h
-rw-r--r-- root/root      3473 2021-01-07 04:18 ./usr/include/SeqLib/BamWriter.h
-rw-r--r-- root/root      1170 2021-01-07 04:18 ./usr/include/SeqLib/FastqReader.h
-rw-r--r-- root/root      4281 2023-07-18 13:56 ./usr/include/SeqLib/FermiAssembler.h
-rw-r--r-- root/root      6354 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegion.h
-rw-r--r-- root/root     19869 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegionCollection.cpp
-rw-r--r-- root/root     11804 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegionCollection.h
-rw-r--r-- root/root      7320 2021-01-07 04:18 ./usr/include/SeqLib/IntervalTree.h
-rw-r--r-- root/root     17538 2021-01-07 04:18 ./usr/include/SeqLib/ReadFilter.h
-rw-r--r-- root/root      1387 2023-07-18 13:56 ./usr/include/SeqLib/RefGenome.h
-rw-r--r-- root/root      3832 2021-01-07 04:18 ./usr/include/SeqLib/SeqLibCommon.h
-rw-r--r-- root/root      4176 2021-01-07 04:18 ./usr/include/SeqLib/SeqLibUtils.h
-rw-r--r-- root/root      2455 2021-01-07 04:18 ./usr/include/SeqLib/SeqPlot.h
-rw-r--r-- root/root       577 2021-01-07 04:18 ./usr/include/SeqLib/ThreadPool.h
-rw-r--r-- root/root      2421 2021-01-07 04:18 ./usr/include/SeqLib/UnalignedSequence.h
-rw-r--r-- root/root     17078 2021-01-07 04:18 ./usr/include/SeqLib/aho_corasick.hpp
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/lib/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root    886428 2023-07-18 13:56 ./usr/lib/arm-linux-gnueabihf/libseqlib.a
lrwxrwxrwx root/root         0 2023-07-18 13:56 ./usr/lib/arm-linux-gnueabihf/libseqlib.so -> libseqlib.so.2.0.0
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root       301 2023-07-18 13:56 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libseqlib.pc
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/share/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/share/doc/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/share/doc/libseqlib-dev/
-rw-r--r-- root/root      1675 2023-07-18 13:56 ./usr/share/doc/libseqlib-dev/changelog.Debian.gz
-rw-r--r-- root/root      2658 2023-07-18 13:56 ./usr/share/doc/libseqlib-dev/copyright


libseqlib2-dbgsym_1.2.0+dfsg-10_armhf.deb
-----------------------------------------

 new Debian package, version 2.0.
 size 2242408 bytes: control archive=556 bytes.
     411 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: libseqlib2-dbgsym
 Source: libseqlib
 Version: 1.2.0+dfsg-10
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2299
 Depends: libseqlib2 (= 1.2.0+dfsg-10)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libseqlib2
 Build-Ids: 7b2a2106d980cb76e5baf3118a9754afc02a0fb2

drwxr-xr-x root/root         0 2023-07-18 13:56 ./
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/lib/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/lib/debug/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/lib/debug/.build-id/7b/
-rw-r--r-- root/root   2343428 2023-07-18 13:56 ./usr/lib/debug/.build-id/7b/2a2106d980cb76e5baf3118a9754afc02a0fb2.debug
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/share/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/share/doc/
lrwxrwxrwx root/root         0 2023-07-18 13:56 ./usr/share/doc/libseqlib2-dbgsym -> libseqlib2


libseqlib2_1.2.0+dfsg-10_armhf.deb
----------------------------------

 new Debian package, version 2.0.
 size 131104 bytes: control archive=1236 bytes.
    1331 bytes,    23 lines      control              
     229 bytes,     3 lines      md5sums              
      39 bytes,     1 lines      shlibs               
      68 bytes,     2 lines      triggers             
 Package: libseqlib2
 Source: libseqlib
 Version: 1.2.0+dfsg-10
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 414
 Depends: libc6 (>= 2.33), libfml0 (>= 0.1+git20190320.b499514), libgcc-s1 (>= 3.5), libhts3 (>= 1.17), libjsoncpp25 (>= 1.9.5), libssw0 (>= 1.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/walaj/SeqLib
 Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data
  C++ API and command line tool that provides a rapid and user-friendly
  interface to BAM/SAM/CRAM files, global sequence alignment operations
  and sequence assembly. Four C libraries perform core operations in
  SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
  and Fermi for error correction and sequence assembly. Benchmarking
  indicates that SeqLib has lower CPU and memory requirements than leading
  C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
  and assemble reads from a CRAM file and then align with BWA-MEM.
  SeqLib also provides additional capabilities, including chromosome-aware
  interval queries and read plotting. Command line tools are available for
  performing integrated error correction, micro-assemblies and alignment.

drwxr-xr-x root/root         0 2023-07-18 13:56 ./
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/lib/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root         0 2023-07-18 13:56 ./usr/lib/arm-linux-gnueabihf/libseqlib.so.2 -> libseqlib.so.2.0.0
-rw-r--r-- root/root    407456 2023-07-18 13:56 ./usr/lib/arm-linux-gnueabihf/libseqlib.so.2.0.0
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/share/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/share/doc/
drwxr-xr-x root/root         0 2023-07-18 13:56 ./usr/share/doc/libseqlib2/
-rw-r--r-- root/root      1675 2023-07-18 13:56 ./usr/share/doc/libseqlib2/changelog.Debian.gz
-rw-r--r-- root/root      2658 2023-07-18 13:56 ./usr/share/doc/libseqlib2/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 33832
Build-Time: 405
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 520
Job: libseqlib_1.2.0+dfsg-10
Machine Architecture: armhf
Package: libseqlib
Package-Time: 982
Source-Version: 1.2.0+dfsg-10
Space: 33832
Status: successful
Version: 1.2.0+dfsg-10
--------------------------------------------------------------------------------
Finished at 2023-09-15T05:00:36Z
Build needed 00:16:22, 33832k disc space