libseqlib →
1.1.2+dfsg-5 →
armhf → 2020-01-15 08:51:12
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| libseqlib 1.1.2+dfsg-5 (armhf) Wed, 15 Jan 2020 08:45:08 +0000 |
+==============================================================================+
Package: libseqlib
Version: 1.1.2+dfsg-5
Source Version: 1.1.2+dfsg-5
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-d608611c-0f4a-44b9-b7ea-9f6046cb895a' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.3 MB in 11s (2301 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libseqlib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libseqlib.git
Please use:
git clone https://salsa.debian.org/med-team/libseqlib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 172 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main libseqlib 1.1.2+dfsg-5 (dsc) [2202 B]
Get:2 http://172.17.0.1/private bullseye-staging/main libseqlib 1.1.2+dfsg-5 (tar) [157 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main libseqlib 1.1.2+dfsg-5 (diff) [12.5 kB]
Fetched 172 kB in 0s (1303 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libseqlib-NesqYm/libseqlib-1.1.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libseqlib-NesqYm' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-E7Rs2Q/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-E7Rs2Q/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive ./ Packages [435 B]
Fetched 2111 B in 0s (9934 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
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(Reading database ... 12207 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), d-shlibs, pkg-config, libhts-dev, libcurl4-openssl-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1-3), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev
Filtered Build-Depends: debhelper-compat (= 12), d-shlibs, pkg-config, libhts-dev, libcurl4-openssl-dev, zlib1g-dev, libfml-dev (>= 0.1-3), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev
dpkg-deb: building package 'sbuild-build-depends-libseqlib-dummy' in '/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive/sbuild-build-depends-libseqlib-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libseqlib-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive ./ Sources [577 B]
Get:5 copy:/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive ./ Packages [651 B]
Fetched 2561 B in 0s (11.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libseqlib build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libbwa-dev
libcroco3 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdebhelper-perl
libdeflate0 libelf1 libfile-stripnondeterminism-perl libfml-dev libfml0
libglib2.0-0 libgssapi-krb5-2 libhts-dev libhts3 libicu63 libjsoncpp-dev
libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblzma-dev
libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1
libsigsegv2 libssh2-1 libssl1.1 libssw-dev libssw0 libsub-override-perl
libtinfo5 libtool libuchardet0 libxml2 m4 man-db pkg-config po-debconf
sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff samtools
libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
libssl-dev krb5-doc krb5-user liblzma-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales publicsuffix libltdl-dev
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libbwa-dev
libcroco3 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdebhelper-perl
libdeflate0 libelf1 libfile-stripnondeterminism-perl libfml-dev libfml0
libglib2.0-0 libgssapi-krb5-2 libhts-dev libhts3 libicu63 libjsoncpp-dev
libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblzma-dev
libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1
libsigsegv2 libssh2-1 libssl1.1 libssw-dev libssw0 libsub-override-perl
libtinfo5 libtool libuchardet0 libxml2 m4 man-db pkg-config po-debconf
sbuild-build-depends-libseqlib-dummy sensible-utils zlib1g-dev
0 upgraded, 64 newly installed, 0 to remove and 0 not upgraded.
Need to get 28.3 MB of archives.
After this operation, 85.9 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-E7Rs2Q/apt_archive ./ sbuild-build-depends-libseqlib-dummy 0.invalid.0 [936 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-3 [262 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-3 [112 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-3 [66.8 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf d-shlibs all 0.88 [17.4 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.3 [174 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-1 [14.6 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1 [1138 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.3 [1019 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libbwa-dev armhf 0.7.17-4 [137 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1 [73.9 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.67.0-2 [284 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.67.0-2 [286 kB]
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Get:53 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.5-1 [78.0 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libfml0 armhf 0.1-7 [69.0 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libfml-dev armhf 0.1-7 [80.4 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.10.2-2 [327 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libhts-dev armhf 1.10.2-2 [4784 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libssw0 armhf 1.1-7 [19.8 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libssw-dev armhf 1.1-7 [23.3 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp-dev armhf 1.7.4-3 [78.6 kB]
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Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libkeyutils1:armhf (1.6-6) ...
Setting up libpsl5:armhf (0.20.2-2) ...
Setting up libmagic-mgc (1:5.38-3) ...
Setting up libarchive-zip-perl (1.67-1) ...
Setting up libglib2.0-0:armhf (2.62.4-1) ...
No schema files found: doing nothing.
Setting up libssl1.1:armhf (1.1.1d-2) ...
Setting up libdebhelper-perl (12.7.3) ...
Setting up libbrotli1:armhf (1.0.7-6) ...
Setting up libnghttp2-14:armhf (1.40.0-1) ...
Setting up libmagic1:armhf (1:5.38-3) ...
Setting up libdeflate0 (1.5-1) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-3) ...
Setting up libfml0 (0.1-7) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up libkrb5support0:armhf (1.17-6+b1) ...
Setting up autotools-dev (20180224.1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up pkg-config (0.29-6) ...
Setting up d-shlibs (0.88) ...
Setting up libk5crypto3:armhf (1.17-6+b1) ...
Setting up libbwa-dev (0.7.17-4) ...
Setting up liblzma-dev:armhf (5.2.4-1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20191019-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libssw0:armhf (1.1-7) ...
Setting up libxml2:armhf (2.9.4+dfsg1-8) ...
Setting up libjsoncpp1:armhf (1.7.4-3) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-1) ...
Setting up libjsoncpp-dev:armhf (1.7.4-3) ...
Setting up libfml-dev (0.1-7) ...
Setting up libssw-dev:armhf (1.1-7) ...
Setting up libtool (2.4.6-11) ...
Setting up m4 (1.4.18-4) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11) ...
Setting up dh-strip-nondeterminism (1.6.3-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up libcurl4:armhf (7.67.0-2) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up libcurl3-gnutls:armhf (7.67.0-2) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libcurl4-openssl-dev:armhf (7.67.0-2) ...
Setting up libhts3:armhf (1.10.2-2) ...
Setting up po-debconf (1.0.21) ...
Setting up libhts-dev:armhf (1.10.2-2) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.7.3) ...
Setting up sbuild-build-depends-libseqlib-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.33.1-6+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-22+rpi1 gcc-9_9.2.1-22+rpi1 libc6-dev_2.29-7+rpi1 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.1-6+rpi1 binutils-arm-linux-gnueabihf_2.33.1-6+rpi1 binutils-common_2.33.1-6+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-22+rpi1 d-shlibs_0.88 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dirmngr_2.2.19-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-3 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-22+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-22+rpi1 gcc-9-base_9.2.1-22+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-1 gnupg-l10n_2.2.19-1 gnupg-utils_2.2.19-1 gpg_2.2.19-1 gpg-agent_2.2.19-1 gpg-wks-client_2.2.19-1 gpg-wks-server_2.2.19-1 gpgconf_2.2.19-1 gpgsm_2.2.19-1 gpgv_2.2.19-1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-22+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-22+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-6+rpi1 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbwa-dev_0.7.17-4 libbz2-1.0_1.0.8-2 libc-bin_2.29-7+rpi1 libc-dev-bin_2.29-7+rpi1 libc6_2.29-7+rpi1 libc6-dev_2.29-7+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-22+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libcurl3-gnutls_7.67.0-2 libcurl4_7.67.0-2 libcurl4-openssl-dev_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.3 libdeflate0_1.5-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libfml-dev_0.1-7 libfml0_0.1-7 libgcc-9-dev_9.2.1-22+rpi1 libgcc1_1:9.2.1-22+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-22+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.10.2-2 libhts3_1.10.2-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22-2 libjsoncpp-dev_1.7.4-3 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-3 libmagic1_1:5.38-3 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpsl5_0.20.2-2 libreadline7_7.0-5 libreadline8_8.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1+fossil191229-1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libssw-dev_1.1-7 libssw0_1.1-7 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 libsub-override-perl_0.09-2 libsystemd0_244-3+rpi1+b1 libtasn1-6_4.15.0-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-22+rpi1 libuchardet0_0.0.6-3 libudev1_244-3+rpi1+b1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libseqlib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Dec 18 14:08:04 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libseqlib_1.1.2+dfsg-5.dsc
dpkg-source: info: extracting libseqlib in /<<BUILDDIR>>/libseqlib-1.1.2+dfsg
dpkg-source: info: unpacking libseqlib_1.1.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking libseqlib_1.1.2+dfsg-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libs.patch
dpkg-source: info: applying adapt_to_debian_fermi-lite.patch
dpkg-source: info: applying fix_fermi-lite_usage.patch
dpkg-source: info: applying fix_htslib_usage.patch
dpkg-source: info: applying fml_include_path.patch
dpkg-source: info: applying dynamic_lib.patch
dpkg-source: info: applying use_debian_packaged_jsoncpp.patch
dpkg-source: info: applying use_debian_packaged_ssw.patch
dpkg-source: info: applying pkg-config.patch
dpkg-source: info: applying fix_private_htslib_usage.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-d608611c-0f4a-44b9-b7ea-9f6046cb895a
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libseqlib
dpkg-buildpackage: info: source version 1.1.2+dfsg-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac,
libtoolize: and rerunning libtoolize and aclocal.
libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT'
configure.ac:17: installing './compile'
configure.ac:19: installing './config.guess'
configure.ac:19: installing './config.sub'
configure.ac:4: installing './missing'
src/Makefile.am: installing './depcomp'
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
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dh_auto_build -a
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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FastqReader.lo `test -f 'FastqReader.cpp' || echo './'`FastqReader.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BFC.lo `test -f 'BFC.cpp' || echo './'`BFC.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-ReadFilter.lo `test -f 'ReadFilter.cpp' || echo './'`ReadFilter.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-SeqPlot.lo `test -f 'SeqPlot.cpp' || echo './'`SeqPlot.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -fPIC -DPIC -o .libs/libseqlib_la-BFC.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-FastqReader.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -fPIC -DPIC -o .libs/libseqlib_la-ReadFilter.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -fPIC -DPIC -o .libs/libseqlib_la-SeqPlot.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -o libseqlib_la-FastqReader.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -o libseqlib_la-BFC.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-GenomicRegion.lo `test -f 'GenomicRegion.cpp' || echo './'`GenomicRegion.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -fPIC -DPIC -o .libs/libseqlib_la-GenomicRegion.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-RefGenome.lo `test -f 'RefGenome.cpp' || echo './'`RefGenome.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -fPIC -DPIC -o .libs/libseqlib_la-RefGenome.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -o libseqlib_la-SeqPlot.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -o libseqlib_la-RefGenome.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -o libseqlib_la-GenomicRegion.o >/dev/null 2>&1
In file included from /usr/include/c++/9/vector:72,
from ../SeqLib/ReadFilter.h:7,
from ReadFilter.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SeqLib::Filter::AbstractRule&}; _Tp = SeqLib::Filter::AbstractRule; _Alloc = std::allocator<SeqLib::Filter::AbstractRule>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SeqLib::Filter::AbstractRule>::iterator' {aka '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../SeqLib/ReadFilter.h:7,
from ReadFilter.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void SeqLib::Filter::ReadFilter::AddRule(const SeqLib::Filter::AbstractRule&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamWriter.lo `test -f 'BamWriter.cpp' || echo './'`BamWriter.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamWriter.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamReader.lo `test -f 'BamReader.cpp' || echo './'`BamReader.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -o libseqlib_la-BamWriter.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamReader.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BWAWrapper.lo `test -f 'BWAWrapper.cpp' || echo './'`BWAWrapper.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -fPIC -DPIC -o .libs/libseqlib_la-BWAWrapper.o
/usr/include/c++/9/bits/stl_vector.h: In constructor 'SeqLib::Filter::ReadFilterCollection::ReadFilterCollection(const string&, const SeqLib::BamHeader&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SeqLib::Filter::AbstractRule*, std::vector<SeqLib::Filter::AbstractRule> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamRecord.lo `test -f 'BamRecord.cpp' || echo './'`BamRecord.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamRecord.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -o libseqlib_la-BWAWrapper.o >/dev/null 2>&1
In file included from /usr/include/c++/9/vector:72,
from ../SeqLib/BamRecord.h:6,
from BamRecord.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -o libseqlib_la-BamReader.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -o libseqlib_la-BamRecord.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -o libseqlib_la-ReadFilter.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FermiAssembler.lo `test -f 'FermiAssembler.cpp' || echo './'`FermiAssembler.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -fPIC -DPIC -o .libs/libseqlib_la-FermiAssembler.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -o libseqlib_la-FermiAssembler.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamHeader.lo `test -f 'BamHeader.cpp' || echo './'`BamHeader.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamHeader.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -o libseqlib_la-BamHeader.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libseqlib.la -rpath /usr/lib/arm-linux-gnueabihf libseqlib_la-FastqReader.lo libseqlib_la-BFC.lo libseqlib_la-ReadFilter.lo libseqlib_la-SeqPlot.lo libseqlib_la-GenomicRegion.lo libseqlib_la-RefGenome.lo libseqlib_la-BamWriter.lo libseqlib_la-BamReader.lo libseqlib_la-BWAWrapper.lo libseqlib_la-BamRecord.lo libseqlib_la-FermiAssembler.lo libseqlib_la-BamHeader.lo -lz -pthread
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/9/crtbeginS.o .libs/libseqlib_la-FastqReader.o .libs/libseqlib_la-BFC.o .libs/libseqlib_la-ReadFilter.o .libs/libseqlib_la-SeqPlot.o .libs/libseqlib_la-GenomicRegion.o .libs/libseqlib_la-RefGenome.o .libs/libseqlib_la-BamWriter.o .libs/libseqlib_la-BamReader.o .libs/libseqlib_la-BWAWrapper.o .libs/libseqlib_la-BamRecord.o .libs/libseqlib_la-FermiAssembler.o .libs/libseqlib_la-BamHeader.o -lz -L/usr/lib/gcc/arm-linux-gnueabihf/9 -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/9/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/crtn.o -g -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -pthread -Wl,-soname -Wl,libseqlib.so.1 -o .libs/libseqlib.so.1.0.0
libtool: link: (cd ".libs" && rm -f "libseqlib.so.1" && ln -s "libseqlib.so.1.0.0" "libseqlib.so.1")
libtool: link: (cd ".libs" && rm -f "libseqlib.so" && ln -s "libseqlib.so.1.0.0" "libseqlib.so")
libtool: link: ar cru .libs/libseqlib.a libseqlib_la-FastqReader.o libseqlib_la-BFC.o libseqlib_la-ReadFilter.o libseqlib_la-SeqPlot.o libseqlib_la-GenomicRegion.o libseqlib_la-RefGenome.o libseqlib_la-BamWriter.o libseqlib_la-BamReader.o libseqlib_la-BWAWrapper.o libseqlib_la-BamRecord.o libseqlib_la-FermiAssembler.o libseqlib_la-BamHeader.o
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libseqlib.a
libtool: link: ( cd ".libs" && rm -f "libseqlib.la" && ln -s "../libseqlib.la" "libseqlib.la" )
make[3]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg/src'
make[3]: Entering directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg'
dh_auto_test -a
make -j4 check VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg'
Making check in src
make[2]: Entering directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg/src'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<BUILDDIR>>/libseqlib-1.1.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg'
echo "mkdir -p bin && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a bin"
mkdir -p bin && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a bin
make[1]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg'
dh_install
# Trick to get also headers moved by d-shlibmove
cp -a SeqLib debian # note: also GenomicRegionCollection.cpp is really needed by freebayes
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/SeqLib usr/include \
src/.libs/libseqlib.so
Library package automatic movement utility
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libseqlib1/usr/lib/arm-linux-gnueabihf
mv src/.libs/libseqlib.a debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf
mv src/.libs/libseqlib.so debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/libseqlib-1.1.2+dfsg/src/.libs/libseqlib.so.1 debian/libseqlib1/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/libseqlib-1.1.2+dfsg/src/.libs/libseqlib.so.1.0.0 debian/libseqlib1/usr/lib/arm-linux-gnueabihf
PKGDEV=libseqlib-dev
PKGSHL=libseqlib1
install -d -m 755 debian/libseqlib-dev/usr/include
mv debian/SeqLib debian/libseqlib-dev/usr/include
mkdir -p /<<BUILDDIR>>/libseqlib-1.1.2+dfsg/debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv libseqlib.pc /<<BUILDDIR>>/libseqlib-1.1.2+dfsg/debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
make[1]: Leaving directory '/<<BUILDDIR>>/libseqlib-1.1.2+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below
dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below
dpkg-gensymbols: warning: debian/libseqlib1/DEBIAN/symbols doesn't match completely debian/libseqlib1.symbols
--- debian/libseqlib1.symbols (libseqlib1_1.1.2+dfsg-5_armhf)
+++ dpkg-gensymbolsxf80yw 2020-01-15 08:51:10.645379982 +0000
@@ -11,14 +11,16 @@
_ZN4Json6ReaderD2Ev@Base 1.1.1+dfsg
_ZN6SeqLib10BWAWrapper10SetGapOpenEi@Base 1.1.1+dfsg
_ZN6SeqLib10BWAWrapper11SetZDropoffEi@Base 1.1.1+dfsg
- _ZN6SeqLib10BWAWrapper11seqlib_add1EPK6kseq_tP8bntseq_tPhPlPiS8_PP9bntamb1_t@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZN6SeqLib10BWAWrapper11seqlib_add1EPK6kseq_tP8bntseq_tPhPlPiS8_PP9bntamb1_t@Base 1.1.1+dfsg
+ _ZN6SeqLib10BWAWrapper11seqlib_add1EPK6kseq_tP8bntseq_tPhPxPiS8_PP9bntamb1_t@Base 1.1.2+dfsg-5
_ZN6SeqLib10BWAWrapper12SetBandwidthEi@Base 1.1.1+dfsg
_ZN6SeqLib10BWAWrapper14ConstructIndexERKSt6vectorINS_17UnalignedSequenceESaIS2_EE@Base 1.1.1+dfsg
_ZN6SeqLib10BWAWrapper15SetGapExtensionEi@Base 1.1.1+dfsg
_ZN6SeqLib10BWAWrapper15seqlib_make_pacERKSt6vectorINS_17UnalignedSequenceESaIS2_EEb@Base 1.1.1+dfsg
_ZN6SeqLib10BWAWrapper16SetReseedTriggerEf@Base 1.1.1+dfsg
_ZN6SeqLib10BWAWrapper18SetMismatchPenaltyEi@Base 1.1.1+dfsg
- _ZN6SeqLib10BWAWrapper18seqlib_add_to_annsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_P9bntann1_tm@Base 1.1.1+dfsg
+ _ZN6SeqLib10BWAWrapper18seqlib_add_to_annsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_P9bntann1_tj@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZN6SeqLib10BWAWrapper18seqlib_add_to_annsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_P9bntann1_tm@Base 1.1.1+dfsg
_ZN6SeqLib10BWAWrapper18seqlib_bwt_pac2bwtEPKhi@Base 1.1.1+dfsg
_ZN6SeqLib10BWAWrapper24Set3primeClippingPenaltyEi@Base 1.1.1+dfsg
_ZN6SeqLib10BWAWrapper24Set5primeClippingPenaltyEi@Base 1.1.1+dfsg
@@ -37,12 +39,18 @@
_ZN6SeqLib13GenomicRegionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.1+dfsg
_ZN6SeqLib13GenomicRegionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_RKNS_9BamHeaderE@Base 1.1.1+dfsg
_ZN6SeqLib13GenomicRegionC2Eiiic@Base 1.1.1+dfsg
- _ZN6SeqLib13TIntervalTreeIimEC1ERKS1_@Base 1.1.1+dfsg
- _ZN6SeqLib13TIntervalTreeIimEC1ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.1.1+dfsg
- _ZN6SeqLib13TIntervalTreeIimEC2ERKS1_@Base 1.1.1+dfsg
- _ZN6SeqLib13TIntervalTreeIimEC2ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.1.1+dfsg
- _ZN6SeqLib13TIntervalTreeIimED1Ev@Base 1.1.1+dfsg
- _ZN6SeqLib13TIntervalTreeIimED2Ev@Base 1.1.1+dfsg
+ _ZN6SeqLib13TIntervalTreeIijEC1ERKS1_@Base 1.1.2+dfsg-5
+ _ZN6SeqLib13TIntervalTreeIijEC1ERSt6vectorINS_9TIntervalIijEESaIS4_EEjjjjj@Base 1.1.2+dfsg-5
+ _ZN6SeqLib13TIntervalTreeIijEC2ERKS1_@Base 1.1.2+dfsg-5
+ _ZN6SeqLib13TIntervalTreeIijEC2ERSt6vectorINS_9TIntervalIijEESaIS4_EEjjjjj@Base 1.1.2+dfsg-5
+ _ZN6SeqLib13TIntervalTreeIijED1Ev@Base 1.1.2+dfsg-5
+ _ZN6SeqLib13TIntervalTreeIijED2Ev@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZN6SeqLib13TIntervalTreeIimEC1ERKS1_@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZN6SeqLib13TIntervalTreeIimEC1ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZN6SeqLib13TIntervalTreeIimEC2ERKS1_@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZN6SeqLib13TIntervalTreeIimEC2ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZN6SeqLib13TIntervalTreeIimED1Ev@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZN6SeqLib13TIntervalTreeIimED2Ev@Base 1.1.1+dfsg
_ZN6SeqLib14FermiAssembler10ClearReadsEv@Base 1.1.1+dfsg
_ZN6SeqLib14FermiAssembler12ClearContigsEv@Base 1.1.1+dfsg
_ZN6SeqLib14FermiAssembler12CorrectReadsEv@Base 1.1.1+dfsg
@@ -124,7 +132,7 @@
_ZN6SeqLib6FilterlsERSoRKNS0_8FlagRuleE@Base 1.1.1+dfsg
_ZN6SeqLib8tostringIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 1.1.1+dfsg
_ZN6SeqLib8tostringIjEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 1.1.1+dfsg
- _ZN6SeqLib9AddCommasIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZN6SeqLib9AddCommasIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 1.1.1+dfsg
_ZN6SeqLib9BamHeader21ConstructName2IDTableEv@Base 1.1.1+dfsg
_ZN6SeqLib9BamHeaderC1EPK9sam_hdr_t@Base 1.1.2+dfsg
_ZN6SeqLib9BamHeaderC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg
@@ -175,7 +183,8 @@
_ZN6SeqLiblsERSoRKNS_9BamReaderE@Base 1.1.1+dfsg
_ZN6SeqLiblsERSoRKNS_9BamRecordE@Base 1.1.1+dfsg
_ZN6SeqLiblsERSoRKNS_9BamWriterE@Base 1.1.1+dfsg
- _ZN9__gnu_cxx6__stoaIlicJiEEET0_PFT_PKT1_PPS3_DpT2_EPKcS5_PmS9_@Base 1.1.1+dfsg
+ _ZN9__gnu_cxx6__stoaIlicJiEEET0_PFT_PKT1_PPS3_DpT2_EPKcS5_PjS9_@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZN9__gnu_cxx6__stoaIlicJiEEET0_PFT_PKT1_PPS3_DpT2_EPKcS5_PmS9_@Base 1.1.1+dfsg
_ZNK6SeqLib10BWAWrapper10WriteIndexERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg
_ZNK6SeqLib10BWAWrapper11ChrIDToNameB5cxx11Ei@Base 1.1.1+dfsg
_ZNK6SeqLib10BWAWrapper12NumSequencesEv@Base 1.1.1+dfsg
@@ -198,7 +207,8 @@
_ZNK6SeqLib13GenomicRegionleERKS0_@Base 1.1.1+dfsg
_ZNK6SeqLib13GenomicRegionltERKS0_@Base 1.1.1+dfsg
_ZNK6SeqLib13GenomicRegionneERKS0_@Base 1.1.1+dfsg
- _ZNK6SeqLib13TIntervalTreeIimE15findOverlappingEmmRSt6vectorINS_9TIntervalIimEESaIS4_EE@Base 1.1.1+dfsg
+ _ZNK6SeqLib13TIntervalTreeIijE15findOverlappingEjjRSt6vectorINS_9TIntervalIijEESaIS4_EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZNK6SeqLib13TIntervalTreeIimE15findOverlappingEmmRSt6vectorINS_9TIntervalIimEESaIS4_EE@Base 1.1.1+dfsg
_ZNK6SeqLib14FermiAssembler10GetContigsB5cxx11Ev@Base 1.1.1+dfsg
_ZNK6SeqLib14FermiAssembler12GetSequencesEv@Base 1.1.1+dfsg
_ZNK6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE13CountOverlapsERKS1_@Base 1.1.1+dfsg
@@ -240,91 +250,161 @@
_ZNK6SeqLib9BamWriter10BuildIndexEv@Base 1.1.1+dfsg
_ZNK6SeqLib9BamWriter11WriteHeaderEv@Base 1.1.1+dfsg
_ZNK6SeqLib9RefGenome11QueryRegionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii@Base 1.1.1+dfsg
- _ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.1.1+dfsg
+ _ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEjRS7_j@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.1.1+dfsg
_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE5countERS7_@Base 1.1.1+dfsg
- _ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.1.1+dfsg
+ _ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEjRS7_j@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.1.1+dfsg
_ZNKSt5ctypeIcE8do_widenEc@Base 1.1.1+dfsg
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+ _ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.1+dfsg
+ _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.1+dfsg
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.1+dfsg
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.1.2+dfsg-5
+ _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.2+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.1.2+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.1.2+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.2+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.2+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.2+dfsg
_ZNSt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.1.1+dfsg
_ZNSt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev@Base 1.1.1+dfsg
_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.1.1+dfsg
_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev@Base 1.1.1+dfsg
_ZNSt5dequeIPN12aho_corasick5stateIcEESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_@Base 1.1.1+dfsg
_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.1+dfsg
- _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2+dfsg
_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.1.1+dfsg
_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE9push_backERKS2_@Base 1.1.1+dfsg
_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EEC1ERKS4_@Base 1.1.1+dfsg
@@ -343,8 +423,11 @@
_ZNSt6vectorIN6SeqLib6Filter10ReadFilterESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.1+dfsg
_ZNSt6vectorIN6SeqLib6Filter12AbstractRuleESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.1+dfsg
_ZNSt6vectorIN6SeqLib9BamRecordESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.1+dfsg
- _ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.1+dfsg
- _ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EEaSERKS4_@Base 1.1.1+dfsg
+ _ZNSt6vectorIN6SeqLib9TIntervalIijEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2+dfsg-5
+ _ZNSt6vectorIN6SeqLib9TIntervalIijEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2+dfsg-5
+ _ZNSt6vectorIN6SeqLib9TIntervalIijEESaIS2_EEaSERKS4_@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EEaSERKS4_@Base 1.1.1+dfsg
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 1.1.1+dfsg
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.1+dfsg
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.1+dfsg
@@ -359,7 +442,8 @@
_ZNSt6vectorIdSaIdEE17_M_realloc_insertIJdEEEvN9__gnu_cxx17__normal_iteratorIPdS1_EEDpOT_@Base 1.1.1+dfsg
_ZNSt6vectorIiSaIiEE12emplace_backIJiEEEvDpOT_@Base 1.1.1+dfsg
_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 1.1.1+dfsg
- _ZNSt6vectorImSaImEE17_M_default_appendEm@Base 1.1.2+dfsg
+ _ZNSt6vectorIjSaIjEE17_M_default_appendEj@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZNSt6vectorImSaImEE17_M_default_appendEm@Base 1.1.2+dfsg
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.1.2+dfsg
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag@Base 1.1.2+dfsg
_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev@Base 1.1.1+dfsg
@@ -372,70 +456,119 @@
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE7_M_copyINSB_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS5_EPKSF_PSt18_Rb_tree_node_baseRT_@Base 1.1.1+dfsg
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E@Base 1.1.1+dfsg
_ZNSt8_Rb_treeIcSt4pairIKcSt10unique_ptrIN12aho_corasick5stateIcEESt14default_deleteIS5_EEESt10_Select1stIS9_ESt4lessIcESaIS9_EE24_M_get_insert_unique_posERS1_@Base 1.1.1+dfsg
- _ZNSt8_Rb_treeIcSt4pairIKcSt10unique_ptrIN12aho_corasick5stateIcEESt14default_deleteIS5_EEESt10_Select1stIS9_ESt4lessIcESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS1_@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZNSt8_Rb_treeIcSt4pairIKcSt10unique_ptrIN12aho_corasick5stateIcEESt14default_deleteIS5_EEESt10_Select1stIS9_ESt4lessIcESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS1_@Base 1.1.1+dfsg
_ZNSt8_Rb_treeIcSt4pairIKcSt10unique_ptrIN12aho_corasick5stateIcEESt14default_deleteIS5_EEESt10_Select1stIS9_ESt4lessIcESaIS9_EE8_M_eraseEPSt13_Rb_tree_nodeIS9_E@Base 1.1.1+dfsg
_ZNSt8__detail9_Map_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS6_N6SeqLib4_BamEESaISB_ENS_10_Select1stESt8equal_toIS6_ESt4hashIS6_ENS_18_Mod_range_hashingENS_20_Default_ranged_hashENS_20_Prime_rehash_policyENS_17_Hashtable_traitsILb1ELb0ELb1EEELb1EEixERS8_@Base 1.1.1+dfsg
_ZSt11__make_heapIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEENS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E0_EEEvT_SK_RT0_@Base 1.1.1+dfsg
_ZSt11__make_heapIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEENS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_SK_RT0_@Base 1.1.1+dfsg
- _ZSt11__make_heapIN9__gnu_cxx17__normal_iteratorIPN6SeqLib11PlottedReadESt6vectorIS3_SaIS3_EEEENS0_5__ops15_Iter_less_iterEEvT_SB_RT0_@Base 1.1.1+dfsg
- _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEElS4_NS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E0_EEEvT_T0_SL_T1_T2_@Base 1.1.1+dfsg
- _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEElS4_NS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_T0_SL_T1_T2_@Base 1.1.1+dfsg
- _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN6SeqLib11PlottedReadESt6vectorIS3_SaIS3_EEEElS3_NS0_5__ops15_Iter_less_iterEEvT_T0_SC_T1_T2_@Base 1.1.1+dfsg
- _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN6SeqLib13GenomicRegionESt6vectorIS3_SaIS3_EEEElS3_NS0_5__ops15_Iter_less_iterEEvT_T0_SC_T1_T2_@Base 1.1.1+dfsg
- _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIimEESt6vectorIS4_SaIS4_EEEElS4_NS0_5__ops15_Iter_comp_iterINS2_19IntervalStartSorterIimEEEEEvT_T0_SG_T1_T2_@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZSt11__make_heapIN9__gnu_cxx17__normal_iteratorIPN6SeqLib11PlottedReadESt6vectorIS3_SaIS3_EEEENS0_5__ops15_Iter_less_iterEEvT_SB_RT0_@Base 1.1.1+dfsg
+ _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEEiS4_NS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E0_EEEvT_T0_SL_T1_T2_@Base 1.1.2+dfsg-5
+ _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEEiS4_NS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_T0_SL_T1_T2_@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEElS4_NS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E0_EEEvT_T0_SL_T1_T2_@Base 1.1.1+dfsg
+#MISSING: 1.1.2+dfsg-5# _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEElS4_NS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_T0_SL_T1_T2_@Base 1.1.1+dfsg
+ _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN6SeqLib11PlottedReadESt6vectorIS3_SaIS3_EEEEiS3_NS0_5__ops15_Iter_less_iterEEvT_T0_SC_T1_T2_@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN6SeqLib11PlottedReadESt6vectorIS3_SaIS3_EEEElS3_NS0_5__ops15_Iter_less_iterEEvT_T0_SC_T1_T2_@Base 1.1.1+dfsg
+ _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN6SeqLib13GenomicRegionESt6vectorIS3_SaIS3_EEEEiS3_NS0_5__ops15_Iter_less_iterEEvT_T0_SC_T1_T2_@Base 1.1.2+dfsg-5
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+#MISSING: 1.1.2+dfsg-5# _ZTSSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTSSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTSSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTSSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTSSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTSSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTSSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTSSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTSSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTSSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTSSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTSSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTSSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTSSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTSSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.2+dfsg
+ _ZTVSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTVSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTVSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTVSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTVSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIijEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTVSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTVSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTVSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTVSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTVSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTVSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTVSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTVSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTVSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTVSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTVSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.1+dfsg
+ _ZTVSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2+dfsg-5
+#MISSING: 1.1.2+dfsg-5# _ZTVSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.2+dfsg
dh_makeshlibs: failing due to earlier errors
make: *** [debian/rules:10: binary-arch] Error 255
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-01-15T08:51:10Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 28028
Build-Time: 78
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 264
Job: libseqlib_1.1.2+dfsg-5
Machine Architecture: armhf
Package: libseqlib
Package-Time: 362
Source-Version: 1.1.2+dfsg-5
Space: 28028
Status: attempted
Version: 1.1.2+dfsg-5
--------------------------------------------------------------------------------
Finished at 2020-01-15T08:51:10Z
Build needed 00:06:02, 28028k disk space