librostlab-blast →
1.0.1-9 →
armhf → 2018-09-25 05:07:29
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| librostlab-blast 1.0.1-9 (armhf) Tue, 25 Sep 2018 04:52:37 +0000 |
+==============================================================================+
Package: librostlab-blast
Version: 1.0.1-9
Source Version: 1.0.1-9
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-75e6f670-8e50-4f63-a0d0-dfee08d3050c' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.1 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.8 MB]
Fetched 23.9 MB in 11s (2247 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'librostlab-blast' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/librostlab-blast.git
Please use:
git clone https://salsa.debian.org/med-team/librostlab-blast.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 392 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main librostlab-blast 1.0.1-9 (dsc) [2385 B]
Get:2 http://172.17.0.1/private buster-staging/main librostlab-blast 1.0.1-9 (tar) [384 kB]
Get:3 http://172.17.0.1/private buster-staging/main librostlab-blast 1.0.1-9 (diff) [5188 B]
Fetched 392 kB in 0s (1499 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/librostlab-blast-1yBWpE/librostlab-blast-1.0.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/librostlab-blast-1yBWpE' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ZDfRG2/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ZDfRG2/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (11.3 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 74 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15689 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra
Filtered Build-Depends: debhelper (>= 11~), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra
dpkg-deb: building package 'sbuild-build-depends-librostlab-blast-dummy' in '/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive/sbuild-build-depends-librostlab-blast-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-librostlab-blast-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive ./ Sources [564 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive ./ Packages [648 B]
Fetched 2545 B in 0s (12.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install librostlab-blast build dependencies (apt-based resolver)
----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs
debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file flex
fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext
gettext-base graphviz groff-base intltool-debian libarchive-zip-perl
libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev
libbrotli1 libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-6.0 libcroco3
libcups2 libcupsimage2 libdatrie1 libedit2 libelf1
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgd3 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2
libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libice6
libicu-le-hb0 libicu60 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo
libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0
liblab-gamut1 liblcms2-2 libllvm6.0 libltdl7 libmagic-mgc libmagic1
libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpotrace0
libptexenc1 libpython-stdlib libpython2-stdlib libpython2.7-minimal
libpython2.7-stdlib librostlab3 librostlab3-dev libsigsegv2 libsm6
libsynctex2 libtexlua52 libtexlua53 libtexluajit2 libthai-data libthai0
libtiff5 libtimedate-perl libtool libwebp6 libwoff1 libx11-6 libx11-data
libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxdot4 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6
libxxhash0 libzzip-0-13 m4 man-db mime-support po-debconf poppler-data
preview-latex-style python python-minimal python2 python2-minimal python2.7
python2.7-minimal t1utils tex-common texlive-base texlive-binaries
texlive-fonts-recommended texlive-latex-base texlive-latex-extra
texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist
whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui flex-doc
gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff
cups-common libgd-tools krb5-doc krb5-user liblcms2-utils librostlab-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc
apparmor less www-browser libmail-box-perl poppler-utils ghostscript
fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic
| fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum
python-doc python-tk python2-doc python2.7-doc binfmt-support gv
| postscript-viewer perl-tk xpdf-reader | pdf-viewer
texlive-fonts-recommended-doc texlive-latex-base-doc python-pygments
icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl
texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pstricks
dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex
Recommended packages:
libfl-dev curl | wget | lynx fonts-liberation libcupsfilters1
libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs
fonts-droid-fallback libgts-bin krb5-locales libltdl-dev
libmail-sendmail-perl lmodern tex-gyre tipa texlive-plain-generic ruby
| ruby-interpreter tk libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs
debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file flex
fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext
gettext-base graphviz groff-base intltool-debian libarchive-zip-perl
libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev
libbrotli1 libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-6.0 libcroco3
libcups2 libcupsimage2 libdatrie1 libedit2 libelf1
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgd3 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2
libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libice6
libicu-le-hb0 libicu60 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo
libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0
liblab-gamut1 liblcms2-2 libllvm6.0 libltdl7 libmagic-mgc libmagic1
libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpotrace0
libptexenc1 libpython-stdlib libpython2-stdlib libpython2.7-minimal
libpython2.7-stdlib librostlab3 librostlab3-dev libsigsegv2 libsm6
libsynctex2 libtexlua52 libtexlua53 libtexluajit2 libthai-data libthai0
libtiff5 libtimedate-perl libtool libwebp6 libwoff1 libx11-6 libx11-data
libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxdot4 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6
libxxhash0 libzzip-0-13 m4 man-db mime-support po-debconf poppler-data
preview-latex-style python python-minimal python2 python2-minimal python2.7
python2.7-minimal sbuild-build-depends-librostlab-blast-dummy t1utils
tex-common texlive-base texlive-binaries texlive-fonts-recommended
texlive-latex-base texlive-latex-extra texlive-latex-recommended
texlive-pictures ucf x11-common xdg-utils
0 upgraded, 147 newly installed, 0 to remove and 74 not upgraded.
Need to get 125 MB/138 MB of archives.
After this operation, 498 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZDfRG2/apt_archive ./ sbuild-build-depends-librostlab-blast-dummy 0.invalid.0 [928 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-2 [1161 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf flex armhf 2.6.4-6.2 [427 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf poppler-data all 0.4.9-2 [1473 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-4 [394 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-4 [1088 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-3 [20.9 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.15-4 [1843 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.15-4 [299 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-3 [20.7 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.15-3 [20.7 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-3 [22.7 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf tex-common all 6.10 [53.0 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-7 [117 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libedit2 armhf 3.1-20180525-1 [70.6 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.3 [12.2 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-1.1 [771 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-7 [434 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libbison-dev armhf 2:3.0.4.dfsg-1+b1 [433 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf bison armhf 2:3.0.4.dfsg-1+b1 [743 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf d-shlibs all 0.82+nmu1 [19.2 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-4 [547 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.8-2+rpi1 [860 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-7 [1218 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libllvm6.0 armhf 1:6.0.1-9+rpi1 [12.5 MB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libclang1-6.0 armhf 1:6.0.1-9+rpi1 [5684 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libxapian30 armhf 1.4.7-2 [949 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf doxygen armhf 1.8.13-10 [3257 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.0-5 [280 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.0-5 [325 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.0-5 [403 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf fonts-lmodern all 2.004.5-5 [4539 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13-3 [132 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.6-1 [298 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.6-1 [688 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13-3 [107 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13-3 [98.4 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.12-1 [589 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libcdt5 armhf 2.40.1-4 [58.1 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libcgraph6 armhf 2.40.1-4 [77.2 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9-6 [225 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libgts-0.7-5 armhf 0.7.6+darcs121130-4 [134 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-4 [387 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-3 [166 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-3 [61.8 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-3 [51.4 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libpathplan4 armhf 2.40.1-4 [61.1 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libxdot4 armhf 2.40.1-4 [55.5 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libgvc6 armhf 2.40.1-4 [545 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libgvpr2 armhf 2.40.1-4 [188 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf liblab-gamut1 armhf 2.40.1-4 [220 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libxmu6 armhf 2:1.1.2-2 [52.0 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libxaw7 armhf 2:1.0.13-1 [164 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf graphviz armhf 2.40.1-4 [499 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libavahi-common-data armhf 0.7-4 [122 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libavahi-common3 armhf 0.7-4 [51.1 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libavahi-client3 armhf 0.7-4 [53.7 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libbrotli1 armhf 1.0.6-1 [259 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libcups2 armhf 2.2.8-5 [285 kB]
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Get:91 http://172.17.0.1/private buster-staging/main armhf libgs9-common all 9.25~dfsg-2 [5132 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libijs-0.35 armhf 0.35-13 [16.7 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libjbig2dec0 armhf 0.15-1 [56.5 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf liblcms2-2 armhf 2.9-3 [116 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libgs9 armhf 9.25~dfsg-2 [1831 kB]
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Get:98 http://172.17.0.1/private buster-staging/main armhf libkpathsea6 armhf 2018.20180907.48586-1 [156 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libpotrace0 armhf 1.15-1 [23.9 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libptexenc1 armhf 2018.20180907.48586-1 [58.0 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf librostlab3 armhf 1.0.20-8 [6212 B]
Get:103 http://172.17.0.1/private buster-staging/main armhf librostlab3-dev armhf 1.0.20-8 [13.7 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libsynctex2 armhf 2018.20180907.48586-1 [67.1 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libtexlua52 armhf 2018.20180907.48586-1 [86.7 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libtexlua53 armhf 2018.20180907.48586-1 [98.3 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libtexluajit2 armhf 2018.20180907.48586-1 [204 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libwoff1 armhf 1.0.2-1 [36.1 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libxxhash0 armhf 0.6.5-1 [9744 B]
Get:110 http://172.17.0.1/private buster-staging/main armhf libzzip-0-13 armhf 0.13.62-3.1 [51.5 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf preview-latex-style all 11.91-1 [201 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf t1utils armhf 1.41-2 [52.0 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf texlive-binaries armhf 2018.20180907.48586-1 [7978 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf texlive-base all 2018.20180824-1 [18.9 MB]
Get:116 http://172.17.0.1/private buster-staging/main armhf texlive-fonts-recommended all 2018.20180824-1 [5294 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf texlive-latex-base all 2018.20180824-1 [982 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf texlive-latex-recommended all 2018.20180824-1 [15.3 MB]
Get:119 http://172.17.0.1/private buster-staging/main armhf texlive-pictures all 2018.20180824-1 [4129 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf texlive-latex-extra all 2018.20180824-1 [12.5 MB]
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Regenerating fonts cache... done.
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Setting up libpango-1.0-0:armhf (1.42.4-3) ...
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Setting up libpangoft2-1.0-0:armhf (1.42.4-3) ...
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update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
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tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
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Processing triggers for tex-common (6.10) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-2+rpi1 dpkg-dev_1.19.0.5 g++-8_8.1.0-12+rpi1 gcc-8_8.1.0-12+rpi1 libc6-dev_2.27-5+rpi1 libstdc++-8-dev_8.1.0-12+rpi1 libstdc++6_8.1.0-12+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.117 apt_1.6.3 autoconf_2.69-11 automake_1:1.16.1-1.1 autopoint_0.19.8.1-7 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-2+rpi1 binutils-arm-linux-gnueabihf_2.31.1-2+rpi1 binutils-common_2.31.1-2+rpi1 bison_2:3.0.4.dfsg-1+b1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:8.1.0-1+rpi1 cpp-8_8.1.0-12+rpi1 d-shlibs_0.82+nmu1 dash_0.5.8-2.10 dbus_1.12.10-1 dbus-user-session_1.12.10-1 debconf_1.5.69 debhelper_11.3.5 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.9-1+rpi1 dmsetup_2:1.02.145-4.1+b4 doxygen_1.8.13-10 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 e2fsprogs-l10n_1.44.3-1 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20171230-2 flex_2.6.4-6.2 fontconfig_2.13.0-5 fontconfig-config_2.13.0-5 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-5 g++_4:8.1.0-1+rpi1 g++-8_8.1.0-12+rpi1 gcc_4:8.1.0-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.1.0-12+rpi1 gcc-8-base_8.1.0-12+rpi1 gettext_0.19.8.1-7 gettext-base_0.19.8.1-7 gnupg_2.2.9-1+rpi1 gnupg-agent_2.2.9-1+rpi1 gnupg-l10n_2.2.9-1+rpi1 gnupg-utils_2.2.9-1+rpi1 gpg_2.2.9-1+rpi1 gpg-agent_2.2.9-1+rpi1 gpg-wks-client_2.2.9-1+rpi1 gpg-wks-server_2.2.9-1+rpi1 gpgconf_2.2.9-1+rpi1 gpgsm_2.2.9-1+rpi1 gpgv_2.2.9-1+rpi1 graphviz_2.40.1-4 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2 hostname_3.20 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.13-8 libapt-pkg5.0_1.6.3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.1.0-12+rpi1 libassuan0_2.5.1-2 libatomic1_8.1.0-12+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libavahi-client3_0.7-4 libavahi-common-data_0.7-4 libavahi-common3_0.7-4 libbinutils_2.31.1-2+rpi1 libbison-dev_2:3.0.4.dfsg-1+b1 libblkid1_2.32.1-0.1 libbrotli1_1.0.6-1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-5+rpi1 libc-dev-bin_2.27-5+rpi1 libc6_2.27-5+rpi1 libc6-dev_2.27-5+rpi1 libcairo2_1.15.12-1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-12+rpi1 libcdt5_2.40.1-4 libcgraph6_2.40.1-4 libclang1-6.0_1:6.0.1-9+rpi1 libcom-err2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2 libcryptsetup4_2:1.7.5-1 libcups2_2.2.8-5 libcupsimage2_2.2.8-5 libdatrie1_0.2.12-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.10-1 libdebconfclient0_0.244 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libedit2_3.1-20180525-1 libelf1_0.170-0.5 libexpat1_2.2.5-3 libext2fs2_1.44.3-1 libfakeroot_1.23-1 libfdisk1_2.32.1-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfontconfig1_2.13.0-5 libfreetype6_2.8.1-2 libfribidi0_1.0.5-3 libgcc-8-dev_8.1.0-12+rpi1 libgcc1_1:8.1.0-12+rpi1 libgcrypt20_1.8.3-1 libgd3_2.2.5-4 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1 libgomp1_8.1.0-12+rpi1 libgpg-error0_1.32-1 libgraphite2-3_1.3.12-1 libgs9_9.25~dfsg-2 libgs9-common_9.25~dfsg-2 libgssapi-krb5-2_1.16-2 libgts-0.7-5_0.7.6+darcs121130-4 libgvc6_2.40.1-4 libgvpr2_2.40.1-4 libharfbuzz-icu0_1.8.8-2+rpi1 libharfbuzz0b_1.8.8-2+rpi1 libhogweed4_3.4-1 libice6_2:1.0.9-2 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-2.2 libijs-0.35_0.35-13 libip4tc0_1.6.2-1.1 libisl19_0.20-1 libjbig0_2.1-3.1+b2 libjbig2dec0_0.15-1 libjpeg62-turbo_1:1.5.2-2+b1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-1 libkpathsea6_2018.20180907.48586-1 libkrb5-3_1.16-2 libkrb5support0_1.16-2 libksba8_1.3.5-2 liblab-gamut1_2.40.1-4 liblcms2-2_2.9-3 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 libllvm6.0_1:6.0.1-9+rpi1 libltdl7_2.4.6-4 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180714-1 libncurses6_6.1+20180714-1 libncursesw5_6.1+20180714-1 libncursesw6_6.1+20180714-1 libnettle6_3.4-1 libnpth0_1.6-1 libnss-systemd_239-7 libopenjp2-7_2.3.0-1 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_239-7 libpam0g_1.1.8-3.7 libpango-1.0-0_1.42.4-3 libpangocairo-1.0-0_1.42.4-3 libpangoft2-1.0-0_1.42.4-3 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpathplan4_2.40.1-4 libpcre3_2:8.39-10 libperl5.24_5.24.1-7 libperl5.26_5.26.2-7 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libplymouth4_0.9.3-3 libpng16-16_1.6.34-2+rpi1 libpotrace0_1.15-1 libprocps7_2:3.3.15-2 libptexenc1_2018.20180907.48586-1 libpython-stdlib_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7-minimal_2.7.15-4 libpython2.7-stdlib_2.7.15-4 libreadline7_7.0-5 librostlab3_1.0.20-8 librostlab3-dev_1.0.20-8 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0h-4 libstdc++-8-dev_8.1.0-12+rpi1 libstdc++6_8.1.0-12+rpi1 libsynctex2_2018.20180907.48586-1 libsystemd0_239-7 libtasn1-6_4.13-3 libtexlua52_2018.20180907.48586-1 libtexlua53_2018.20180907.48586-1 libtexluajit2_2018.20180907.48586-1 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.9-6 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180714-1 libtinfo6_6.1+20180714-1 libtool_2.4.6-4 libubsan1_8.1.0-12+rpi1 libudev1_239-7 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libwebp6_0.6.1-2 libwoff1_1.0.2-1 libx11-6_2:1.6.6-1 libx11-data_2:1.6.6-1 libxapian30_1.4.7-2 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1 libxcb-render0_1.13-3 libxcb-shm0_1.13-3 libxcb1_1.13-3 libxdmcp6_1:1.1.2-3 libxdot4_2.40.1-4 libxext6_2:1.3.3-1+b2 libxi6_2:1.7.9-1 libxml2_2.9.4+dfsg1-7 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libxxhash0_0.6.5-1 libzstd1_1.3.4+dfsg-3+rpi1 libzzip-0-13_0.13.62-3.1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-93 man-db_2.8.4-2 mawk_1.3.3-17 mime-support_3.61 mount_2.32.1-0.1 multiarch-support_2.27-5+rpi1 nano_2.9.8-1 ncurses-base_6.1+20180714-1 ncurses-bin_6.1+20180714-1 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.26.2-7 perl-base_5.26.2-7 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 pinentry-curses_1.1.0-1 plymouth_0.9.3-3 po-debconf_1.0.20 poppler-data_0.4.9-2 preview-latex-style_11.91-1 procps_2:3.3.15-2 python_2.7.15-3 python-minimal_2.7.15-3 python2_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-4 python2.7-minimal_2.7.15-4 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librostlab-blast-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_239-7 systemd-sysv_239-7 sysvinit-utils_2.88dsf-59.10 t1utils_1.41-2 tar_1.30+dfsg-2 tex-common_6.10 texlive-base_2018.20180824-1 texlive-binaries_2018.20180907.48586-1 texlive-fonts-recommended_2018.20180824-1 texlive-latex-base_2018.20180824-1 texlive-latex-extra_2018.20180824-1 texlive-latex-recommended_2018.20180824-1 texlive-pictures_2018.20180824-1 tzdata_2018e-1 ucf_3.0038 udev_239-7 util-linux_2.32.1-0.1 x11-common_1:7.7+19 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Sep 20 09:26:55 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./librostlab-blast_1.0.1-9.dsc
dpkg-source: info: extracting librostlab-blast in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz
dpkg-source: info: unpacking librostlab-blast_1.0.1-9.debian.tar.xz
dpkg-source: info: applying reproducible.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-75e6f670-8e50-4f63-a0d0-dfee08d3050c
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package librostlab-blast
dpkg-buildpackage: info: source version 1.0.1-9
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build librostlab-blast-1.0.1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -f lib/librostlab-blast.tag
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:7: installing './compile'
configure.ac:5: installing './missing'
lib/Makefile.am: installing './depcomp'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for bison... bison -y
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... none needed
checking whether yytext is a pointer... no
checking rostlab/aux_functions.h usability... yes
checking rostlab/aux_functions.h presence... yes
checking for rostlab/aux_functions.h... yes
checking rostlab/rostlab_stdexcept.h usability... yes
checking rostlab/rostlab_stdexcept.h presence... yes
checking for rostlab/rostlab_stdexcept.h... yes
checking for doxygen... /usr/bin/doxygen
checking for perl... /usr/bin/perl
checking for dot... /usr/bin/dot
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for egrep... /bin/egrep
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating lib/Makefile
config.status: creating lib/Doxyfile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make all-recursive
make[3]: Entering directory '/<<PKGBUILDDIR>>'
Making all in lib
make[4]: Entering directory '/<<PKGBUILDDIR>>/lib'
mkdir -p rostlab
/bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex
/bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:22.9-17: warning: deprecated directive, use '%define api.namespace rostlab::blast' [-Wdeprecated]
%define namespace "rostlab::blast"
^^^^^^^^^
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:22.9-17: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated]
%define namespace "rostlab::blast"
^^^^^^^^^
updating rostlab/blast-parser-location.h
updating rostlab/blast-parser-position.h
updating rostlab/blast-parser-stack.h
updating rostlab/blast-parser-parser.h
sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp
sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h
sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h
make all-am
make[5]: Entering directory '/<<PKGBUILDDIR>>/lib'
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp
\
\
/bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f 'librostlab_blast_la-blast-parser-scanner.cpp' || echo './'`librostlab_blast_la-blast-parser-scanner.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c librostlab_blast_la-blast-parser-scanner.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o
In file included from /usr/include/c++/8/vector:69,
from ./rostlab/blast-result.h:24,
from blast-parser-parser.ypp:26,
from blast-parser-parser.cpp:46:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = rostlab::blast::parser::stack_symbol_type; _Alloc = std::allocator<rostlab::blast::parser::stack_symbol_type>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<rostlab::blast::parser::stack_symbol_type, std::allocator<rostlab::blast::parser::stack_symbol_type> >::iterator' {aka '__gnu_cxx::__normal_iterator<rostlab::blast::parser::stack_symbol_type*, std::vector<rostlab::blast::parser::stack_symbol_type, std::allocator<rostlab::blast::parser::stack_symbol_type> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = rostlab::blast::oneline; _Alloc = std::allocator<rostlab::blast::oneline>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<rostlab::blast::oneline>::iterator' {aka '__gnu_cxx::__normal_iterator<rostlab::blast::oneline*, std::vector<rostlab::blast::oneline> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = rostlab::blast::hsp; _Alloc = std::allocator<rostlab::blast::hsp>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<rostlab::blast::hsp>::iterator' {aka '__gnu_cxx::__normal_iterator<rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<rostlab::blast::hsp>::iterator' {aka '__gnu_cxx::__normal_iterator<rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from ./rostlab/blast-result.h:24,
from blast-parser-parser.ypp:26,
from blast-parser-parser.cpp:46:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual int rostlab::blast::parser::parse()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<rostlab::blast::parser::stack_symbol_type*, std::vector<rostlab::blast::parser::stack_symbol_type, std::allocator<rostlab::blast::parser::stack_symbol_type> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<rostlab::blast::parser::stack_symbol_type*, std::vector<rostlab::blast::parser::stack_symbol_type, std::allocator<rostlab::blast::parser::stack_symbol_type> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<rostlab::blast::oneline*, std::vector<rostlab::blast::oneline> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<rostlab::blast::parser::stack_symbol_type*, std::vector<rostlab::blast::parser::stack_symbol_type, std::allocator<rostlab::blast::parser::stack_symbol_type> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<rostlab::blast::parser::stack_symbol_type*, std::vector<rostlab::blast::parser::stack_symbol_type, std::allocator<rostlab::blast::parser::stack_symbol_type> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c blast-parser-driver.cpp -o librostlab_blast_la-blast-parser-driver.o >/dev/null 2>&1
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Chapter 1.
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Chapter 2.
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Chapter 3.
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Chapter 4.
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Chapter 5.
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Chapter 6.
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(hyperref) removing `math shift' on input line 1.
[59] [60] [61]) (./structrostlab_1_1blast_1_1parser_1_1syntax__error.tex
[62] [63 <./structrostlab_1_1blast_1_1parser_1_1syntax__error__inherit__graph.p
df> <./structrostlab_1_1blast_1_1parser_1_1syntax__error__coll__graph.pdf
pdfTeX warning: /usr/bin/pdflatex (file ./structrostlab_1_1blast_1_1parser_1_1s
yntax__error__coll__graph.pdf): PDF inclusion: multiple pdfs with page group in
cluded in a single page
>]) (./structrostlab_1_1blast_1_1parser_1_1token.tex [64]
Overfull \vbox (55.31026pt too high) has occurred while \output is active
[65]) [66]
Chapter 7.
(./blast-parser-driver_8h.tex [67 <./blast-parser-driver_8h__incl.pdf>])
(./blast-parser-location_8h.tex [68] [69 <./blast-parser-location_8h__incl.pdf>
<./blast-parser-location_8h__dep__incl.pdf
pdfTeX warning: /usr/bin/pdflatex (file ./blast-parser-location_8h__dep__incl.p
df): PDF inclusion: multiple pdfs with page group included in a single page
>]) (./blast-parser-parser_8h.tex [70] [71 <./blast-parser-parser_8h__incl.pdf>
<./blast-parser-parser_8h__dep__incl.pdf
pdfTeX warning: /usr/bin/pdflatex (file ./blast-parser-parser_8h__dep__incl.pdf
): PDF inclusion: multiple pdfs with page group included in a single page
>] [72]) (./blast-parser-position_8h.tex [73] [74 <./blast-parser-position_8h__
incl.pdf> <./blast-parser-position_8h__dep__incl.pdf
pdfTeX warning: /usr/bin/pdflatex (file ./blast-parser-position_8h__dep__incl.p
df): PDF inclusion: multiple pdfs with page group included in a single page
>]) (./blast-parser-stack_8h.tex [75]) (./blast-result_8h.tex [76 <./blast-pars
er-stack_8h__incl.pdf> <./blast-parser-stack_8h__dep__incl.pdf
pdfTeX warning: /usr/bin/pdflatex (file ./blast-parser-stack_8h__dep__incl.pdf)
: PDF inclusion: multiple pdfs with page group included in a single page
>] [77 <./blast-result_8h__incl.pdf> <./blast-result_8h__dep__incl.pdf
pdfTeX warning: /usr/bin/pdflatex (file ./blast-result_8h__dep__incl.pdf): PDF
inclusion: multiple pdfs with page group included in a single page
>]) [78] (./refman.ind
Underfull \hbox (badness 10000) in paragraph at lines 45--47
[]| \T1/phv/m/n/10 Y[]Y[]_[][]I[]G[]N[]O[]R[]E[]_[][]M[]A[]Y[]B[]E[]_[][]U[]N[]
I[]N[]I[]T[]I[]A[]L[]I[]Z[]E[]D[]_[][]B[]E[]G[]IN,
[79] [80] [81] [82] [83]) (./refman.aux)
LaTeX Font Warning: Some font shapes were not available, defaults substituted.
)
(see the transcript file for additional information)pdfTeX warning (dest): name
{blast\\unhbox\040\\voidb@x\040\\kern\040\\z@\040\\char\040`\\protect\040\\disc
retionary\040{\\char\040\\defaulthyphenchar\040}{}{}parser\\unhbox\040\\voidb@x
\040\\kern\040\\z@\040\\char\040`\\protect\040\\discretionary\040{\\char\040\\d
efaulthyphenchar\040}{}{}driver_8h} has been referenced but does not exist, rep
laced by a fixed one
{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmsy8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy
9.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/urw/courier/ucrro8a.pfb></usr/share/texlive
/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb></usr/share/texlive/texmf-dist/
fonts/type1/urw/helvetic/uhvb8ac.pfb></usr/share/texlive/texmf-dist/fonts/type1
/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helveti
c/uhvro8a.pfb>
Output written on refman.pdf (95 pages, 427725 bytes).
Transcript written on refman.log.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/lib'
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dh_auto_test -a
make -j4 check VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making check in lib
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make check-am
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create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
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Making install in lib
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make install-am
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make[4]: Entering directory '/<<PKGBUILDDIR>>/lib'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ../libtool --mode=install /usr/bin/install -c librostlab-blast.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/librostlab-blast.so.0.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so.0 || { rm -f librostlab-blast.so.0 && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so || { rm -f librostlab-blast.so && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so; }; })
libtool: install: /usr/bin/install -c .libs/librostlab-blast.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.la
libtool: install: /usr/bin/install -c .libs/librostlab-blast.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/rostlab'
/usr/bin/install -c -m 644 rostlab/blast-parser-driver.h rostlab/blast-result.h '/<<PKGBUILDDIR>>/debian/tmp/usr/include/rostlab'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/rostlab'
/usr/bin/install -c -m 644 rostlab/blast-parser-location.h rostlab/blast-parser-parser.h rostlab/blast-parser-position.h rostlab/blast-parser-stack.h '/<<PKGBUILDDIR>>/debian/tmp/usr/include/rostlab'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/lib'
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make[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/librostlab-blast/examples'
/usr/bin/install -c -m 644 examples/converged.ali examples/parseblast.cpp '/<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/librostlab-blast/examples'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
d-shlibmove --commit \
--multiarch \
--exclude-la \
--v5 \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf
PKGDEV=librostlab-blast0-dev
PKGSHL=librostlab-blast0v5
install -d -m 755 debian/librostlab-blast0-dev/usr/include
mv debian/tmp/usr/include/rostlab debian/librostlab-blast0-dev/usr/include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_installdocs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installdocs
find debian -name "*.md5" -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installchangelogs -a
dh_installexamples -a
dh_perl -a
debian/rules override_dh_link
make[1]: Entering directory '/<<PKGBUILDDIR>>'
find debian -name jquery.js -delete
dh_link
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress -Xlibrostlab-blast.tag
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'librostlab-blast0v5-dbgsym' in '../librostlab-blast0v5-dbgsym_1.0.1-9_armhf.deb'.
dpkg-deb: building package 'librostlab-blast0v5' in '../librostlab-blast0v5_1.0.1-9_armhf.deb'.
dpkg-deb: building package 'librostlab-blast0-dev' in '../librostlab-blast0-dev_1.0.1-9_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../librostlab-blast_1.0.1-9_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build librostlab-blast-1.0.1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-09-25T05:07:26Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
librostlab-blast_1.0.1-9_armhf.changes:
---------------------------------------
Format: 1.8
Date: Thu, 20 Sep 2018 11:22:42 +0200
Source: librostlab-blast
Binary: librostlab-blast0v5 librostlab-blast0-dev librostlab-blast-doc
Architecture: armhf
Version: 1.0.1-9
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
librostlab-blast-doc - very fast C++ library for parsing the output of NCBI BLAST progra
librostlab-blast0-dev - very fast C++ library for parsing the output of NCBI BLAST progra
librostlab-blast0v5 - very fast C++ library for parsing the output of NCBI BLAST progra
Changes:
librostlab-blast (1.0.1-9) unstable; urgency=medium
.
* Drop unneeded get-orig-source target
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Cleanup unused lintian overrides but leave the one for jquery since its
not really clear whether the issue is solved
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be4d95e3e92bb4945028302b71e0a54de74a40f070da46d9de39d37ccb6f2e90 428608 librostlab-blast0v5-dbgsym_1.0.1-9_armhf.deb
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Files:
d6cc30ab42e16187f930eb949889a87b 87152 libdevel optional librostlab-blast0-dev_1.0.1-9_armhf.deb
e0c2bbed8833b770df9a2035fd56a08f 428608 debug optional librostlab-blast0v5-dbgsym_1.0.1-9_armhf.deb
02f2ba2066ec62a7e4cce2ed1a15814d 72064 libs optional librostlab-blast0v5_1.0.1-9_armhf.deb
25ddc789475597d29043fc8d1af12ca7 9530 science optional librostlab-blast_1.0.1-9_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
librostlab-blast0-dev_1.0.1-9_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 87152 bytes: control archive=1224 bytes.
968 bytes, 24 lines control
1146 bytes, 14 lines md5sums
Package: librostlab-blast0-dev
Source: librostlab-blast
Version: 1.0.1-9
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1371
Depends: librostlab-blast0v5 (= 1.0.1-9), librostlab-dev
Suggests: librostlab-blast-doc
Conflicts: librostlab-blast-dev
Provides: librostlab-blast-dev
Section: libdevel
Priority: optional
Homepage: http://rostlab.org/
Description: very fast C++ library for parsing the output of NCBI BLAST programs (devel)
This package provides a very fast library for parsing the default output of
NCBI BLAST programs into a C++ structure.
.
libzerg is faster, but it provides only lexing (i.e. it only returns pairs
of token identifiers and token string values). librostlab-blast uses a
parser generated with bison on top of a flex-generated lexer very similar to
that of libzerg.
.
This package contains files necessary for developing applications with
librostlab-blast.
drwxr-xr-x root/root 0 2018-09-20 09:22 ./
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/include/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/include/rostlab/
-rw-r--r-- root/root 4174 2018-09-20 09:22 ./usr/include/rostlab/blast-parser-driver.h
-rw-r--r-- root/root 5479 2018-09-20 09:22 ./usr/include/rostlab/blast-parser-location.h
-rw-r--r-- root/root 15355 2018-09-20 09:22 ./usr/include/rostlab/blast-parser-parser.h
-rw-r--r-- root/root 5088 2018-09-20 09:22 ./usr/include/rostlab/blast-parser-position.h
-rw-r--r-- root/root 3787 2018-09-20 09:22 ./usr/include/rostlab/blast-parser-stack.h
-rw-r--r-- root/root 10413 2018-09-20 09:22 ./usr/include/rostlab/blast-result.h
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/lib/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 1333484 2018-09-20 09:22 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.a
lrwxrwxrwx root/root 0 2018-09-20 09:22 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.so -> librostlab-blast.so.0.0.0
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/share/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/share/doc/librostlab-blast0-dev/
-rw-r--r-- root/root 820 2018-09-20 09:22 ./usr/share/doc/librostlab-blast0-dev/README.test
-rw-r--r-- root/root 1306 2018-09-20 09:22 ./usr/share/doc/librostlab-blast0-dev/changelog.Debian.gz
-rw-r--r-- root/root 210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0-dev/changelog.gz
-rw-r--r-- root/root 2024 2018-09-20 09:22 ./usr/share/doc/librostlab-blast0-dev/copyright
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/share/doc/librostlab-blast0-dev/examples/
-rw-r--r-- root/root 1580 2012-11-24 16:20 ./usr/share/doc/librostlab-blast0-dev/examples/converged.ali.gz
-rw-r--r-- root/root 324 2012-11-24 16:20 ./usr/share/doc/librostlab-blast0-dev/examples/parseblast.cpp
-rw-r--r-- root/root 676 2018-09-20 09:22 ./usr/share/doc/librostlab-blast0-dev/installation-test
librostlab-blast0v5-dbgsym_1.0.1-9_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 428608 bytes: control archive=552 bytes.
415 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: librostlab-blast0v5-dbgsym
Source: librostlab-blast
Version: 1.0.1-9
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 448
Depends: librostlab-blast0v5 (= 1.0.1-9)
Section: debug
Priority: optional
Description: debug symbols for librostlab-blast0v5
Build-Ids: 2dccef53734ca4ab2f0b9df048619cb65c69f13f
drwxr-xr-x root/root 0 2018-09-20 09:22 ./
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/lib/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/lib/debug/.build-id/2d/
-rw-r--r-- root/root 447508 2018-09-20 09:22 ./usr/lib/debug/.build-id/2d/ccef53734ca4ab2f0b9df048619cb65c69f13f.debug
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/share/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-09-20 09:22 ./usr/share/doc/librostlab-blast0v5-dbgsym -> librostlab-blast0v5
librostlab-blast0v5_1.0.1-9_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 72064 bytes: control archive=1004 bytes.
877 bytes, 22 lines control
335 bytes, 4 lines md5sums
39 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: librostlab-blast0v5
Source: librostlab-blast
Version: 1.0.1-9
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1254
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Conflicts: librostlab-blast0
Replaces: librostlab-blast0
Section: libs
Priority: optional
Homepage: http://rostlab.org/
Description: very fast C++ library for parsing the output of NCBI BLAST programs
This package provides a very fast library for parsing the default output of
NCBI BLAST programs into a C++ structure.
.
libzerg is faster, but it provides only lexing (i.e. it only returns pairs
of token identifiers and token string values). librostlab-blast uses a
parser generated with bison on top of a flex-generated lexer very similar to
that of libzerg.
.
This package contains the shared library.
drwxr-xr-x root/root 0 2018-09-20 09:22 ./
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/lib/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2018-09-20 09:22 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0 -> librostlab-blast.so.0.0.0
-rw-r--r-- root/root 1267104 2018-09-20 09:22 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/share/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-09-20 09:22 ./usr/share/doc/librostlab-blast0v5/
-rw-r--r-- root/root 1306 2018-09-20 09:22 ./usr/share/doc/librostlab-blast0v5/changelog.Debian.gz
-rw-r--r-- root/root 210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0v5/changelog.gz
-rw-r--r-- root/root 2024 2018-09-20 09:22 ./usr/share/doc/librostlab-blast0v5/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 31516
Build-Time: 77
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 793
Job: librostlab-blast_1.0.1-9
Machine Architecture: armhf
Package: librostlab-blast
Package-Time: 889
Source-Version: 1.0.1-9
Space: 31516
Status: successful
Version: 1.0.1-9
--------------------------------------------------------------------------------
Finished at 2018-09-25T05:07:26Z
Build needed 00:14:49, 31516k disk space