Raspbian Package Auto-Building

Build log for librostlab-blast (1.0.1-7) on armhf

librostlab-blast1.0.1-7armhf → 2016-07-11 22:48:28

sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-02

+==============================================================================+
| librostlab-blast 1.0.1-7 (armhf)                           11 Jul 2016 22:27 |
+==============================================================================+

Package: librostlab-blast
Version: 1.0.1-7
Source Version: 1.0.1-7
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/librostlab-blast-x5k39l/librostlab-blast-1.0.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/librostlab-blast-x5k39l' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-5f8bb4f2-b3ff-4457-b2b9-b5d66c930b68' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9144 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.1 MB]
Fetched 20.3 MB in 21s (926 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'librostlab-blast' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/rostlab/librostlab-blast/trunk/
Need to get 392 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main librostlab-blast 1.0.1-7 (dsc) [2489 B]
Get:2 http://172.17.0.1/private stretch-staging/main librostlab-blast 1.0.1-7 (tar) [384 kB]
Get:3 http://172.17.0.1/private stretch-staging/main librostlab-blast 1.0.1-7 (diff) [5480 B]
Fetched 392 kB in 0s (4862 kB/s)
Download complete and in download only mode

Check architectures
-------------------


Check dependencies
------------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-uTvfEr/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-uTvfEr/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-uTvfEr/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-uTvfEr/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-uTvfEr/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-uTvfEr/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-uTvfEr/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-uTvfEr/apt_archive ./ Sources [194 B]
Get:5 file:/<<BUILDDIR>>/resolver-uTvfEr/apt_archive ./ Packages [507 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-uTvfEr/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...

+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver)                         |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 7 not upgraded.
Need to get 0 B/766 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-uTvfEr/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [766 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 13672 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: debhelper (>= 9), dh-autoreconf, d-shlibs, bison, doxygen, flex, graphviz, latex-xcolor, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra
Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, d-shlibs, bison, doxygen, flex, graphviz, latex-xcolor, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra
dpkg-deb: building package 'sbuild-build-depends-librostlab-blast-dummy' in '/<<BUILDDIR>>/resolver-hv9sOA/apt_archive/sbuild-build-depends-librostlab-blast-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-hv9sOA/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-hv9sOA/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-hv9sOA/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-hv9sOA/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-hv9sOA/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-hv9sOA/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-hv9sOA/apt_archive ./ Sources [271 B]
Get:5 file:/<<BUILDDIR>>/resolver-hv9sOA/apt_archive ./ Packages [590 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-hv9sOA/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...

+------------------------------------------------------------------------------+
| Install librostlab-blast build dependencies (apt-based resolver)             |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs
  debhelper dh-autoreconf dh-strip-nondeterminism doxygen file flex fontconfig
  fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base
  intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data
  libavahi-common3 libbison-dev libbsd0 libcairo2 libcdt5 libcgraph6
  libclang1-3.6 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1
  libedit2 libexpat1 libffi6 libfile-stripnondeterminism-perl libfl-dev
  libfontconfig1 libfreetype6 libgd3 libglib2.0-0 libgnutls30 libgraphite2-3
  libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2
  libharfbuzz-icu0 libharfbuzz0b libhogweed4 libice6 libicu55 libijs-0.35
  libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6
  libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libllvm3.6v5 libltdl7
  libmagic1 libnettle6 libnspr4 libnss3 libobjc-5-dev libobjc4 libopenjp2-7
  libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16
  libpoppler61 libpotrace0 libptexenc1 libpython-stdlib libpython2.7-minimal
  libpython2.7-stdlib librostlab3 librostlab3-dev libsasl2-2
  libsasl2-modules-db libsigsegv2 libsm6 libsqlite3-0 libssl1.0.2 libsynctex1
  libtasn1-6 libtexlua52 libtexluajit2 libthai-data libthai0 libtiff5 libtool
  libunistring0 libwebp5 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxi6 libxml2 libxmu6
  libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db mime-support po-debconf
  poppler-data preview-latex-style python python-minimal python2.7
  python2.7-minimal t1utils tex-common texlive-base texlive-binaries
  texlive-fonts-recommended texlive-latex-base texlive-latex-extra
  texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist
  whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc
  libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff cups-common
  libgd-tools gnutls-bin krb5-doc krb5-user liblcms2-utils librostlab-doc
  libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser
  libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho
  | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic
  fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk
  python2.7-doc binfmt-support perl-tk xpdf-reader | pdf-viewer gv
  | postscript-viewer libspreadsheet-parseexcel-perl libfile-which-perl
  python-pygments texlive-pstricks libtcltk-ruby dot2tex prerex gvfs-bin
Recommended packages:
  curl | wget | lynx-cur fonts-liberation libglib2.0-data shared-mime-info
  xdg-user-dirs fonts-droid-fallback libgts-bin krb5-locales libsasl2-modules
  libltdl-dev xml-core libmail-sendmail-perl lmodern ruby wish tex-gyre
  texlive-fonts-recommended-doc tipa texlive-latex-base-doc
  texlive-latex-extra-doc prosper texlive-latex-recommended-doc tk ruby
  | ruby-interpreter texlive-pictures-doc libfile-mimeinfo-perl
  libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs
  debhelper dh-autoreconf dh-strip-nondeterminism doxygen file flex fontconfig
  fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base
  intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data
  libavahi-common3 libbison-dev libbsd0 libcairo2 libcdt5 libcgraph6
  libclang1-3.6 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1
  libedit2 libexpat1 libffi6 libfile-stripnondeterminism-perl libfl-dev
  libfontconfig1 libfreetype6 libgd3 libglib2.0-0 libgnutls30 libgraphite2-3
  libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2
  libharfbuzz-icu0 libharfbuzz0b libhogweed4 libice6 libicu55 libijs-0.35
  libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6
  libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libllvm3.6v5 libltdl7
  libmagic1 libnettle6 libnspr4 libnss3 libobjc-5-dev libobjc4 libopenjp2-7
  libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16
  libpoppler61 libpotrace0 libptexenc1 libpython-stdlib libpython2.7-minimal
  libpython2.7-stdlib librostlab3 librostlab3-dev libsasl2-2
  libsasl2-modules-db libsigsegv2 libsm6 libsqlite3-0 libssl1.0.2 libsynctex1
  libtasn1-6 libtexlua52 libtexluajit2 libthai-data libthai0 libtiff5 libtool
  libunistring0 libwebp5 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxi6 libxml2 libxmu6
  libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db mime-support po-debconf
  poppler-data preview-latex-style python python-minimal python2.7
  python2.7-minimal sbuild-build-depends-librostlab-blast-dummy t1utils
  tex-common texlive-base texlive-binaries texlive-fonts-recommended
  texlive-latex-base texlive-latex-extra texlive-latex-recommended
  texlive-pictures ucf x11-common xdg-utils
0 upgraded, 152 newly installed, 0 to remove and 7 not upgraded.
Need to get 106 MB/117 MB of archives.
After this operation, 424 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-hv9sOA/apt_archive ./ sbuild-build-depends-librostlab-blast-dummy 0.invalid.0 [854 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libedit2 armhf 3.1-20150325-1 [70.7 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.12-1 [387 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.12-1 [1167 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-2 [40.3 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.13.0-1 [479 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2h-1 [889 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.12-1 [1844 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.12-1 [276 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-2 [19.8 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-2 [153 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libfl-dev armhf 2.6.0-11 [84.3 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf flex armhf 2.6.0-11 [404 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libpng16-16 armhf 1.6.23-1 [260 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libfreetype6 armhf 2.6.3-3+b1 [385 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf fonts-dejavu-core all 2.35-1 [1064 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf fontconfig-config all 2.11.0-6.4 [271 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libfontconfig1 armhf 2.11.0-6.4 [313 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf fontconfig armhf 2.11.0-6.4 [401 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libgts-0.7-5 armhf 0.7.6+darcs121130-1.2 [129 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libpaper1 armhf 1.1.24+nmu4 [21.4 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libxdmcp6 armhf 1:1.1.2-1.1 [24.9 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libxcb1 armhf 1.11.1-1 [40.9 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libx11-data all 2:1.6.3-1 [128 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libzzip-0-13 armhf 0.13.62-3 [51.3 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf poppler-data all 0.4.7-7 [1466 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-2 [269 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-2 [62.4 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libnettle6 armhf 3.2-1 [202 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libhogweed4 armhf 3.2-1 [126 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.2-3 [93.3 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.8-1 [44.1 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.4.13-1 [737 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.14.2+dfsg-1 [57.2 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.14.2+dfsg-1 [111 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.14.2+dfsg-1 [261 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.14.2+dfsg-1 [131 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-15 [65.6 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-15 [96.7 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b2 [198 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libbison-dev armhf 2:3.0.4.dfsg-1 [433 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf bison armhf 2:3.0.4.dfsg-1 [744 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf d-shlibs all 0.75 [18.0 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.019-1 [12.2 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.019-1 [7352 B]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160403 [800 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libllvm3.6v5 armhf 1:3.6.2-3 [6970 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libobjc4 armhf 6.1.1-1+rpi1 [90.8 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libobjc-5-dev armhf 5.4.0-4 [335 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libclang1-3.6 armhf 1:3.6.2-3 [2945 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf doxygen armhf 1.8.11-3 [3231 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libcdt5 armhf 2.38.0-14 [56.6 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libcgraph6 armhf 2.38.0-14 [75.4 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libpixman-1-0 armhf 0.33.6-1 [454 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libxcb-render0 armhf 1.11.1-1 [17.0 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libxcb-shm0 armhf 1.11.1-1 [11.5 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libxrender1 armhf 1:0.9.9-2 [28.9 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libcairo2 armhf 1.14.6-1+b1 [686 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.5.0-1 [109 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libtiff5 armhf 4.0.6-1 [201 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libwebp5 armhf 0.4.4-1+b2 [175 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf libxpm4 armhf 1:3.5.11-1+b1 [42.4 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf libgd3 armhf 2.2.1-1 [117 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.6-0.1 [42.8 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf libthai-data all 0.1.25-1 [165 kB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libdatrie1 armhf 0.2.10-2 [32.5 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf libthai0 armhf 0.1.25-1 [48.5 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf libpango-1.0-0 armhf 1.40.1-1 [293 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf libgraphite2-3 armhf 1.3.8-1 [62.5 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf libharfbuzz0b armhf 1.2.6-2 [585 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf libpangoft2-1.0-0 armhf 1.40.1-1 [231 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libpangocairo-1.0-0 armhf 1.40.1-1 [220 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf libpathplan4 armhf 2.38.0-14 [60.0 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf libxdot4 armhf 2.38.0-14 [54.1 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf libgvc6 armhf 2.38.0-14 [530 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf libgvpr2 armhf 2.38.0-14 [187 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf x11-common all 1:7.7+15 [251 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf libice6 armhf 2:1.0.9-1+b1 [51.9 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf libsm6 armhf 2:1.2.2-1+b1 [31.2 kB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf libxmu6 armhf 2:1.1.2-2 [52.0 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf libxaw7 armhf 2:1.0.13-1 [164 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf graphviz armhf 2.38.0-14 [666 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf libavahi-common-data armhf 0.6.32-1 [118 kB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf libavahi-common3 armhf 0.6.32-1 [48.6 kB]
Get:114 http://172.17.0.1/private stretch-staging/main armhf libavahi-client3 armhf 0.6.32-1 [51.2 kB]
Get:115 http://172.17.0.1/private stretch-staging/main armhf libcups2 armhf 2.1.4-1 [268 kB]
Get:116 http://172.17.0.1/private stretch-staging/main armhf libcupsimage2 armhf 2.1.4-1 [118 kB]
Get:117 http://172.17.0.1/private stretch-staging/main armhf libcupsfilters1 armhf 1.9.0-2 [113 kB]
Get:118 http://172.17.0.1/private stretch-staging/main armhf libijs-0.35 armhf 0.35-12 [16.0 kB]
Get:119 http://172.17.0.1/private stretch-staging/main armhf libjbig2dec0 armhf 0.13-2 [51.1 kB]
Get:120 http://172.17.0.1/private stretch-staging/main armhf liblcms2-2 armhf 2.7-1 [116 kB]
Get:121 http://172.17.0.1/private stretch-staging/main armhf libopenjp2-7 armhf 2.1.0-2.1 [103 kB]
Get:122 http://172.17.0.1/private stretch-staging/main armhf libgs9-common all 9.19~dfsg-1 [3032 kB]
Get:123 http://172.17.0.1/private stretch-staging/main armhf libgs9 armhf 9.19~dfsg-1+b1 [1729 kB]
Get:124 http://172.17.0.1/private stretch-staging/main armhf libharfbuzz-icu0 armhf 1.2.6-2 [436 kB]
Get:125 http://172.17.0.1/private stretch-staging/main armhf libkpathsea6 armhf 2016.20160513.41080-4 [149 kB]
Get:126 http://172.17.0.1/private stretch-staging/main armhf libnspr4 armhf 2:4.12-2 [94.1 kB]
Get:127 http://172.17.0.1/private stretch-staging/main armhf libnss3 armhf 2:3.23-2 [938 kB]
Get:128 http://172.17.0.1/private stretch-staging/main armhf libpaper-utils armhf 1.1.24+nmu4 [17.2 kB]
Get:129 http://172.17.0.1/private stretch-staging/main armhf libpoppler61 armhf 0.44.0-3 [1146 kB]
Get:130 http://172.17.0.1/private stretch-staging/main armhf libpotrace0 armhf 1.13-2 [22.8 kB]
Get:131 http://172.17.0.1/private stretch-staging/main armhf libptexenc1 armhf 2016.20160513.41080-4 [54.8 kB]
Get:132 http://172.17.0.1/private stretch-staging/main armhf librostlab3 armhf 1.0.20-4 [5958 B]
Get:133 http://172.17.0.1/private stretch-staging/main armhf librostlab3-dev armhf 1.0.20-4 [12.7 kB]
Get:134 http://172.17.0.1/private stretch-staging/main armhf libsynctex1 armhf 2016.20160513.41080-4 [57.3 kB]
Get:135 http://172.17.0.1/private stretch-staging/main armhf libtexlua52 armhf 2016.20160513.41080-4 [84.7 kB]
Get:136 http://172.17.0.1/private stretch-staging/main armhf libtexluajit2 armhf 2016.20160513.41080-4 [202 kB]
Get:137 http://172.17.0.1/private stretch-staging/main armhf libxi6 armhf 2:1.7.6-1 [75.9 kB]
Get:138 http://172.17.0.1/private stretch-staging/main armhf tex-common all 6.05 [564 kB]
Get:139 http://172.17.0.1/private stretch-staging/main armhf preview-latex-style all 11.87-3+deb8u1 [318 kB]
Get:140 http://172.17.0.1/private stretch-staging/main armhf t1utils armhf 1.39-2 [52.7 kB]
Get:141 http://172.17.0.1/private stretch-staging/main armhf texlive-binaries armhf 2016.20160513.41080-4 [4906 kB]
Get:142 http://172.17.0.1/private stretch-staging/main armhf xdg-utils all 1.1.1-1 [71.1 kB]
Get:143 http://172.17.0.1/private stretch-staging/main armhf texlive-base all 2016.20160623-1 [15.6 MB]
Get:144 http://172.17.0.1/private stretch-staging/main armhf texlive-fonts-recommended all 2016.20160623-1 [5685 kB]
Get:145 http://172.17.0.1/private stretch-staging/main armhf texlive-latex-base all 2016.20160623-1 [872 kB]
Get:146 http://172.17.0.1/private stretch-staging/main armhf texlive-latex-recommended all 2016.20160623-1 [13.0 MB]
Get:147 http://172.17.0.1/private stretch-staging/main armhf texlive-pictures all 2016.20160623-1 [3768 kB]
Get:148 http://172.17.0.1/private stretch-staging/main armhf texlive-latex-extra all 2016.20160623-1 [10.4 MB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 106 MB in 10s (10.2 MB/s)
Selecting previously unselected package groff-base.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 13672 files and directories currently installed.)
Preparing to unpack .../groff-base_1.22.3-8_armhf.deb ...
Unpacking groff-base (1.22.3-8) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.10_armhf.deb ...
Unpacking bsdmainutils (9.0.10) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.5-1_armhf.deb ...
Unpacking man-db (2.7.5-1) ...
Selecting previously unselected package libedit2:armhf.
Preparing to unpack .../libedit2_3.1-20150325-1_armhf.deb ...
Unpacking libedit2:armhf (3.1-20150325-1) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../libpython2.7-minimal_2.7.12-1_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.12-1) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../python2.7-minimal_2.7.12-1_armhf.deb ...
Unpacking python2.7-minimal (2.7.12-1) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../python-minimal_2.7.11-2_armhf.deb ...
Unpacking python-minimal (2.7.11-2) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../mime-support_3.60_all.deb ...
Unpacking mime-support (3.60) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.2.0-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.0-1) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.2.1-4_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-4) ...
Selecting previously unselected package libsqlite3-0:armhf.
Preparing to unpack .../libsqlite3-0_3.13.0-1_armhf.deb ...
Unpacking libsqlite3-0:armhf (3.13.0-1) ...
Selecting previously unselected package libssl1.0.2:armhf.
Preparing to unpack .../libssl1.0.2_1.0.2h-1_armhf.deb ...
Unpacking libssl1.0.2:armhf (1.0.2h-1) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../libpython2.7-stdlib_2.7.12-1_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.12-1) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../python2.7_2.7.12-1_armhf.deb ...
Unpacking python2.7 (2.7.12-1) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../libpython-stdlib_2.7.11-2_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.11-2) ...
Processing triggers for libc-bin (2.22-11) ...
Setting up libpython2.7-minimal:armhf (2.7.12-1) ...
Setting up python2.7-minimal (2.7.12-1) ...
Setting up python-minimal (2.7.11-2) ...
Selecting previously unselected package python.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 15049 files and directories currently installed.)
Preparing to unpack .../python_2.7.11-2_armhf.deb ...
Unpacking python (2.7.11-2) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../libsigsegv2_2.10-5_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-5) ...
Selecting previously unselected package m4.
Preparing to unpack .../archives/m4_1.4.17-5_armhf.deb ...
Unpacking m4 (1.4.17-5) ...
Selecting previously unselected package libfl-dev:armhf.
Preparing to unpack .../libfl-dev_2.6.0-11_armhf.deb ...
Unpacking libfl-dev:armhf (2.6.0-11) ...
Selecting previously unselected package flex.
Preparing to unpack .../flex_2.6.0-11_armhf.deb ...
Unpacking flex (2.6.0-11) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../libpng16-16_1.6.23-1_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.23-1) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../libfreetype6_2.6.3-3+b1_armhf.deb ...
Unpacking libfreetype6:armhf (2.6.3-3+b1) ...
Selecting previously unselected package ucf.
Preparing to unpack .../archives/ucf_3.0036_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0036) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../fonts-dejavu-core_2.35-1_all.deb ...
Unpacking fonts-dejavu-core (2.35-1) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../fontconfig-config_2.11.0-6.4_all.deb ...
Unpacking fontconfig-config (2.11.0-6.4) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../libfontconfig1_2.11.0-6.4_armhf.deb ...
Unpacking libfontconfig1:armhf (2.11.0-6.4) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../fontconfig_2.11.0-6.4_armhf.deb ...
Unpacking fontconfig (2.11.0-6.4) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.48.1-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.48.1-1) ...
Selecting previously unselected package libgts-0.7-5:armhf.
Preparing to unpack .../libgts-0.7-5_0.7.6+darcs121130-1.2_armhf.deb ...
Unpacking libgts-0.7-5:armhf (0.7.6+darcs121130-1.2) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../libjbig0_2.1-3.1_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../libpaper1_1.1.24+nmu4_armhf.deb ...
Unpacking libpaper1:armhf (1.1.24+nmu4) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../libxau6_1%3a1.0.8-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.8-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-1.1) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../libxcb1_1.11.1-1_armhf.deb ...
Unpacking libxcb1:armhf (1.11.1-1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../libx11-data_2%3a1.6.3-1_all.deb ...
Unpacking libx11-data (2:1.6.3-1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../libx11-6_2%3a1.6.3-1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.6.3-1) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../libxext6_2%3a1.3.3-1_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.3-1) ...
Selecting previously unselected package libzzip-0-13:armhf.
Preparing to unpack .../libzzip-0-13_0.13.62-3_armhf.deb ...
Unpacking libzzip-0-13:armhf (0.13.62-3) ...
Selecting previously unselected package poppler-data.
Preparing to unpack .../poppler-data_0.4.7-7_all.deb ...
Unpacking poppler-data (0.4.7-7) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.28-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.28-2) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.28-2_armhf.deb ...
Unpacking file (1:5.28-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.8.1-1_armhf.deb ...
Unpacking gettext-base (0.19.8.1-1) ...
Selecting previously unselected package libnettle6:armhf.
Preparing to unpack .../libnettle6_3.2-1_armhf.deb ...
Unpacking libnettle6:armhf (3.2-1) ...
Selecting previously unselected package libhogweed4:armhf.
Preparing to unpack .../libhogweed4_3.2-1_armhf.deb ...
Unpacking libhogweed4:armhf (3.2-1) ...
Selecting previously unselected package libp11-kit0:armhf.
Preparing to unpack .../libp11-kit0_0.23.2-3_armhf.deb ...
Unpacking libp11-kit0:armhf (0.23.2-3) ...
Selecting previously unselected package libtasn1-6:armhf.
Preparing to unpack .../libtasn1-6_4.8-1_armhf.deb ...
Unpacking libtasn1-6:armhf (4.8-1) ...
Selecting previously unselected package libgnutls30:armhf.
Preparing to unpack .../libgnutls30_3.4.13-1_armhf.deb ...
Unpacking libgnutls30:armhf (3.4.13-1) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../libkeyutils1_1.5.9-9_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-9) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../libkrb5support0_1.14.2+dfsg-1_armhf.deb ...
Unpacking libkrb5support0:armhf (1.14.2+dfsg-1) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../libk5crypto3_1.14.2+dfsg-1_armhf.deb ...
Unpacking libk5crypto3:armhf (1.14.2+dfsg-1) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../libkrb5-3_1.14.2+dfsg-1_armhf.deb ...
Unpacking libkrb5-3:armhf (1.14.2+dfsg-1) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../libgssapi-krb5-2_1.14.2+dfsg-1_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.14.2+dfsg-1) ...
Selecting previously unselected package libsasl2-modules-db:armhf.
Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-15_armhf.deb ...
Unpacking libsasl2-modules-db:armhf (2.1.26.dfsg1-15) ...
Selecting previously unselected package libsasl2-2:armhf.
Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-15_armhf.deb ...
Unpacking libsasl2-2:armhf (2.1.26.dfsg1-15) ...
Selecting previously unselected package libldap-2.4-2:armhf.
Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2_armhf.deb ...
Unpacking libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Selecting previously unselected package libicu55:armhf.
Preparing to unpack .../libicu55_55.1-7_armhf.deb ...
Unpacking libicu55:armhf (55.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.3+dfsg1-1.2_armhf.deb ...
Unpacking libxml2:armhf (2.9.3+dfsg1-1.2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../autoconf_2.69-10_all.deb ...
Unpacking autoconf (2.69-10) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../autotools-dev_20160430.1_all.deb ...
Unpacking autotools-dev (20160430.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../automake_1%3a1.15-4_all.deb ...
Unpacking automake (1:1.15-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../autopoint_0.19.8.1-1_all.deb ...
Unpacking autopoint (0.19.8.1-1) ...
Selecting previously unselected package libbison-dev:armhf.
Preparing to unpack .../libbison-dev_2%3a3.0.4.dfsg-1_armhf.deb ...
Unpacking libbison-dev:armhf (2:3.0.4.dfsg-1) ...
Selecting previously unselected package bison.
Preparing to unpack .../bison_2%3a3.0.4.dfsg-1_armhf.deb ...
Unpacking bison (2:3.0.4.dfsg-1) ...
Selecting previously unselected package d-shlibs.
Preparing to unpack .../archives/d-shlibs_0.75_all.deb ...
Unpacking d-shlibs (0.75) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.11-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.11-1) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.6+really0.9.3-0.1_armhf.deb ...
Unpacking libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.8.1-1_armhf.deb ...
Unpacking gettext (0.19.8.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.19_all.deb ...
Unpacking po-debconf (1.0.19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../libarchive-zip-perl_1.57-1_all.deb ...
Unpacking libarchive-zip-perl (1.57-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../libfile-stripnondeterminism-perl_0.019-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.019-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../dh-strip-nondeterminism_0.019-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.019-1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../libtool_2.4.6-0.1_all.deb ...
Unpacking libtool (2.4.6-0.1) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../dh-autoreconf_12_all.deb ...
Unpacking dh-autoreconf (12) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20160403_all.deb ...
Unpacking debhelper (9.20160403) ...
Selecting previously unselected package libllvm3.6v5:armhf.
Preparing to unpack .../libllvm3.6v5_1%3a3.6.2-3_armhf.deb ...
Unpacking libllvm3.6v5:armhf (1:3.6.2-3) ...
Selecting previously unselected package libobjc4:armhf.
Preparing to unpack .../libobjc4_6.1.1-1+rpi1_armhf.deb ...
Unpacking libobjc4:armhf (6.1.1-1+rpi1) ...
Selecting previously unselected package libobjc-5-dev:armhf.
Preparing to unpack .../libobjc-5-dev_5.4.0-4_armhf.deb ...
Unpacking libobjc-5-dev:armhf (5.4.0-4) ...
Selecting previously unselected package libclang1-3.6:armhf.
Preparing to unpack .../libclang1-3.6_1%3a3.6.2-3_armhf.deb ...
Unpacking libclang1-3.6:armhf (1:3.6.2-3) ...
Selecting previously unselected package doxygen.
Preparing to unpack .../doxygen_1.8.11-3_armhf.deb ...
Unpacking doxygen (1.8.11-3) ...
Selecting previously unselected package libcdt5.
Preparing to unpack .../libcdt5_2.38.0-14_armhf.deb ...
Unpacking libcdt5 (2.38.0-14) ...
Selecting previously unselected package libcgraph6.
Preparing to unpack .../libcgraph6_2.38.0-14_armhf.deb ...
Unpacking libcgraph6 (2.38.0-14) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../libpixman-1-0_0.33.6-1_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.33.6-1) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../libxcb-render0_1.11.1-1_armhf.deb ...
Unpacking libxcb-render0:armhf (1.11.1-1) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../libxcb-shm0_1.11.1-1_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.11.1-1) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../libxrender1_1%3a0.9.9-2_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.9-2) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../libcairo2_1.14.6-1+b1_armhf.deb ...
Unpacking libcairo2:armhf (1.14.6-1+b1) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../libjpeg62-turbo_1%3a1.5.0-1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:1.5.0-1) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../libtiff5_4.0.6-1_armhf.deb ...
Unpacking libtiff5:armhf (4.0.6-1) ...
Selecting previously unselected package libwebp5:armhf.
Preparing to unpack .../libwebp5_0.4.4-1+b2_armhf.deb ...
Unpacking libwebp5:armhf (0.4.4-1+b2) ...
Selecting previously unselected package libxpm4:armhf.
Preparing to unpack .../libxpm4_1%3a3.5.11-1+b1_armhf.deb ...
Unpacking libxpm4:armhf (1:3.5.11-1+b1) ...
Selecting previously unselected package libgd3:armhf.
Preparing to unpack .../libgd3_2.2.1-1_armhf.deb ...
Unpacking libgd3:armhf (2.2.1-1) ...
Selecting previously unselected package libltdl7:armhf.
Preparing to unpack .../libltdl7_2.4.6-0.1_armhf.deb ...
Unpacking libltdl7:armhf (2.4.6-0.1) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../libthai-data_0.1.25-1_all.deb ...
Unpacking libthai-data (0.1.25-1) ...
Selecting previously unselected package libdatrie1:armhf.
Preparing to unpack .../libdatrie1_0.2.10-2_armhf.deb ...
Unpacking libdatrie1:armhf (0.2.10-2) ...
Selecting previously unselected package libthai0:armhf.
Preparing to unpack .../libthai0_0.1.25-1_armhf.deb ...
Unpacking libthai0:armhf (0.1.25-1) ...
Selecting previously unselected package libpango-1.0-0:armhf.
Preparing to unpack .../libpango-1.0-0_1.40.1-1_armhf.deb ...
Unpacking libpango-1.0-0:armhf (1.40.1-1) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../libgraphite2-3_1.3.8-1_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.8-1) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../libharfbuzz0b_1.2.6-2_armhf.deb ...
Unpacking libharfbuzz0b:armhf (1.2.6-2) ...
Selecting previously unselected package libpangoft2-1.0-0:armhf.
Preparing to unpack .../libpangoft2-1.0-0_1.40.1-1_armhf.deb ...
Unpacking libpangoft2-1.0-0:armhf (1.40.1-1) ...
Selecting previously unselected package libpangocairo-1.0-0:armhf.
Preparing to unpack .../libpangocairo-1.0-0_1.40.1-1_armhf.deb ...
Unpacking libpangocairo-1.0-0:armhf (1.40.1-1) ...
Selecting previously unselected package libpathplan4.
Preparing to unpack .../libpathplan4_2.38.0-14_armhf.deb ...
Unpacking libpathplan4 (2.38.0-14) ...
Selecting previously unselected package libxdot4.
Preparing to unpack .../libxdot4_2.38.0-14_armhf.deb ...
Unpacking libxdot4 (2.38.0-14) ...
Selecting previously unselected package libgvc6.
Preparing to unpack .../libgvc6_2.38.0-14_armhf.deb ...
Unpacking libgvc6 (2.38.0-14) ...
Selecting previously unselected package libgvpr2.
Preparing to unpack .../libgvpr2_2.38.0-14_armhf.deb ...
Unpacking libgvpr2 (2.38.0-14) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../x11-common_1%3a7.7+15_all.deb ...
Unpacking x11-common (1:7.7+15) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../libice6_2%3a1.0.9-1+b1_armhf.deb ...
Unpacking libice6:armhf (2:1.0.9-1+b1) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../libsm6_2%3a1.2.2-1+b1_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.2-1+b1) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../libxt6_1%3a1.1.5-1_armhf.deb ...
Unpacking libxt6:armhf (1:1.1.5-1) ...
Selecting previously unselected package libxmu6:armhf.
Preparing to unpack .../libxmu6_2%3a1.1.2-2_armhf.deb ...
Unpacking libxmu6:armhf (2:1.1.2-2) ...
Selecting previously unselected package libxaw7:armhf.
Preparing to unpack .../libxaw7_2%3a1.0.13-1_armhf.deb ...
Unpacking libxaw7:armhf (2:1.0.13-1) ...
Selecting previously unselected package graphviz.
Preparing to unpack .../graphviz_2.38.0-14_armhf.deb ...
Unpacking graphviz (2.38.0-14) ...
Selecting previously unselected package libavahi-common-data:armhf.
Preparing to unpack .../libavahi-common-data_0.6.32-1_armhf.deb ...
Unpacking libavahi-common-data:armhf (0.6.32-1) ...
Selecting previously unselected package libavahi-common3:armhf.
Preparing to unpack .../libavahi-common3_0.6.32-1_armhf.deb ...
Unpacking libavahi-common3:armhf (0.6.32-1) ...
Selecting previously unselected package libavahi-client3:armhf.
Preparing to unpack .../libavahi-client3_0.6.32-1_armhf.deb ...
Unpacking libavahi-client3:armhf (0.6.32-1) ...
Selecting previously unselected package libcups2:armhf.
Preparing to unpack .../libcups2_2.1.4-1_armhf.deb ...
Unpacking libcups2:armhf (2.1.4-1) ...
Selecting previously unselected package libcupsimage2:armhf.
Preparing to unpack .../libcupsimage2_2.1.4-1_armhf.deb ...
Unpacking libcupsimage2:armhf (2.1.4-1) ...
Selecting previously unselected package libcupsfilters1:armhf.
Preparing to unpack .../libcupsfilters1_1.9.0-2_armhf.deb ...
Unpacking libcupsfilters1:armhf (1.9.0-2) ...
Selecting previously unselected package libijs-0.35:armhf.
Preparing to unpack .../libijs-0.35_0.35-12_armhf.deb ...
Unpacking libijs-0.35:armhf (0.35-12) ...
Selecting previously unselected package libjbig2dec0:armhf.
Preparing to unpack .../libjbig2dec0_0.13-2_armhf.deb ...
Unpacking libjbig2dec0:armhf (0.13-2) ...
Selecting previously unselected package liblcms2-2:armhf.
Preparing to unpack .../liblcms2-2_2.7-1_armhf.deb ...
Unpacking liblcms2-2:armhf (2.7-1) ...
Selecting previously unselected package libopenjp2-7:armhf.
Preparing to unpack .../libopenjp2-7_2.1.0-2.1_armhf.deb ...
Unpacking libopenjp2-7:armhf (2.1.0-2.1) ...
Selecting previously unselected package libgs9-common.
Preparing to unpack .../libgs9-common_9.19~dfsg-1_all.deb ...
Unpacking libgs9-common (9.19~dfsg-1) ...
Selecting previously unselected package libgs9.
Preparing to unpack .../libgs9_9.19~dfsg-1+b1_armhf.deb ...
Unpacking libgs9 (9.19~dfsg-1+b1) ...
Selecting previously unselected package libharfbuzz-icu0:armhf.
Preparing to unpack .../libharfbuzz-icu0_1.2.6-2_armhf.deb ...
Unpacking libharfbuzz-icu0:armhf (1.2.6-2) ...
Selecting previously unselected package libkpathsea6:armhf.
Preparing to unpack .../libkpathsea6_2016.20160513.41080-4_armhf.deb ...
Unpacking libkpathsea6:armhf (2016.20160513.41080-4) ...
Selecting previously unselected package libnspr4:armhf.
Preparing to unpack .../libnspr4_2%3a4.12-2_armhf.deb ...
Unpacking libnspr4:armhf (2:4.12-2) ...
Selecting previously unselected package libnss3:armhf.
Preparing to unpack .../libnss3_2%3a3.23-2_armhf.deb ...
Unpacking libnss3:armhf (2:3.23-2) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../libpaper-utils_1.1.24+nmu4_armhf.deb ...
Unpacking libpaper-utils (1.1.24+nmu4) ...
Selecting previously unselected package libpoppler61:armhf.
Preparing to unpack .../libpoppler61_0.44.0-3_armhf.deb ...
Unpacking libpoppler61:armhf (0.44.0-3) ...
Selecting previously unselected package libpotrace0.
Preparing to unpack .../libpotrace0_1.13-2_armhf.deb ...
Unpacking libpotrace0 (1.13-2) ...
Selecting previously unselected package libptexenc1:armhf.
Preparing to unpack .../libptexenc1_2016.20160513.41080-4_armhf.deb ...
Unpacking libptexenc1:armhf (2016.20160513.41080-4) ...
Selecting previously unselected package librostlab3.
Preparing to unpack .../librostlab3_1.0.20-4_armhf.deb ...
Unpacking librostlab3 (1.0.20-4) ...
Selecting previously unselected package librostlab3-dev.
Preparing to unpack .../librostlab3-dev_1.0.20-4_armhf.deb ...
Unpacking librostlab3-dev (1.0.20-4) ...
Selecting previously unselected package libsynctex1:armhf.
Preparing to unpack .../libsynctex1_2016.20160513.41080-4_armhf.deb ...
Unpacking libsynctex1:armhf (2016.20160513.41080-4) ...
Selecting previously unselected package libtexlua52:armhf.
Preparing to unpack .../libtexlua52_2016.20160513.41080-4_armhf.deb ...
Unpacking libtexlua52:armhf (2016.20160513.41080-4) ...
Selecting previously unselected package libtexluajit2:armhf.
Preparing to unpack .../libtexluajit2_2016.20160513.41080-4_armhf.deb ...
Unpacking libtexluajit2:armhf (2016.20160513.41080-4) ...
Selecting previously unselected package libxi6:armhf.
Preparing to unpack .../libxi6_2%3a1.7.6-1_armhf.deb ...
Unpacking libxi6:armhf (2:1.7.6-1) ...
Selecting previously unselected package tex-common.
Preparing to unpack .../tex-common_6.05_all.deb ...
Unpacking tex-common (6.05) ...
Selecting previously unselected package preview-latex-style.
Preparing to unpack .../preview-latex-style_11.87-3+deb8u1_all.deb ...
Unpacking preview-latex-style (11.87-3+deb8u1) ...
Selecting previously unselected package t1utils.
Preparing to unpack .../t1utils_1.39-2_armhf.deb ...
Unpacking t1utils (1.39-2) ...
Selecting previously unselected package texlive-binaries.
Preparing to unpack .../texlive-binaries_2016.20160513.41080-4_armhf.deb ...
Unpacking texlive-binaries (2016.20160513.41080-4) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../xdg-utils_1.1.1-1_all.deb ...
Unpacking xdg-utils (1.1.1-1) ...
Selecting previously unselected package texlive-base.
Preparing to unpack .../texlive-base_2016.20160623-1_all.deb ...
Unpacking texlive-base (2016.20160623-1) ...
Selecting previously unselected package texlive-fonts-recommended.
Preparing to unpack .../texlive-fonts-recommended_2016.20160623-1_all.deb ...
Unpacking texlive-fonts-recommended (2016.20160623-1) ...
Selecting previously unselected package texlive-latex-base.
Preparing to unpack .../texlive-latex-base_2016.20160623-1_all.deb ...
Unpacking texlive-latex-base (2016.20160623-1) ...
Selecting previously unselected package texlive-latex-recommended.
Preparing to unpack .../texlive-latex-recommended_2016.20160623-1_all.deb ...
Unpacking texlive-latex-recommended (2016.20160623-1) ...
Selecting previously unselected package texlive-pictures.
Preparing to unpack .../texlive-pictures_2016.20160623-1_all.deb ...
Unpacking texlive-pictures (2016.20160623-1) ...
Selecting previously unselected package texlive-latex-extra.
Preparing to unpack .../texlive-latex-extra_2016.20160623-1_all.deb ...
Unpacking texlive-latex-extra (2016.20160623-1) ...
Selecting previously unselected package sbuild-build-depends-librostlab-blast-dummy.
Preparing to unpack .../sbuild-build-depends-librostlab-blast-dummy.deb ...
Unpacking sbuild-build-depends-librostlab-blast-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.22-11) ...
Processing triggers for systemd (230-5) ...
Setting up groff-base (1.22.3-8) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libedit2:armhf (3.1-20150325-1) ...
Setting up mime-support (3.60) ...
Setting up libexpat1:armhf (2.2.0-1) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libsqlite3-0:armhf (3.13.0-1) ...
Setting up libssl1.0.2:armhf (1.0.2h-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.12-1) ...
Setting up python2.7 (2.7.12-1) ...
Setting up libpython-stdlib:armhf (2.7.11-2) ...
Setting up python (2.7.11-2) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up m4 (1.4.17-5) ...
Setting up libfl-dev:armhf (2.6.0-11) ...
Setting up flex (2.6.0-11) ...
Setting up libpng16-16:armhf (1.6.23-1) ...
Setting up libfreetype6:armhf (2.6.3-3+b1) ...
Setting up ucf (3.0036) ...
Setting up fonts-dejavu-core (2.35-1) ...
Setting up fontconfig-config (2.11.0-6.4) ...
Setting up libfontconfig1:armhf (2.11.0-6.4) ...
Setting up fontconfig (2.11.0-6.4) ...
Regenerating fonts cache... done.
Setting up libglib2.0-0:armhf (2.48.1-1) ...
No schema files found: doing nothing.
Setting up libgts-0.7-5:armhf (0.7.6+darcs121130-1.2) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up libpaper1:armhf (1.1.24+nmu4) ...

Creating config file /etc/papersize with new version
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-1.1) ...
Setting up libxcb1:armhf (1.11.1-1) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libx11-6:armhf (2:1.6.3-1) ...
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up libzzip-0-13:armhf (0.13.62-3) ...
Setting up poppler-data (0.4.7-7) ...
Setting up libmagic1:armhf (1:5.28-2) ...
Setting up file (1:5.28-2) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libnettle6:armhf (3.2-1) ...
Setting up libhogweed4:armhf (3.2-1) ...
Setting up libp11-kit0:armhf (0.23.2-3) ...
Setting up libtasn1-6:armhf (4.8-1) ...
Setting up libgnutls30:armhf (3.4.13-1) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up libkrb5support0:armhf (1.14.2+dfsg-1) ...
Setting up libk5crypto3:armhf (1.14.2+dfsg-1) ...
Setting up libkrb5-3:armhf (1.14.2+dfsg-1) ...
Setting up libgssapi-krb5-2:armhf (1.14.2+dfsg-1) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-15) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-15) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1.2) ...
Setting up autoconf (2.69-10) ...
Setting up autotools-dev (20160430.1) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.19.8.1-1) ...
Setting up libbison-dev:armhf (2:3.0.4.dfsg-1) ...
Setting up bison (2:3.0.4.dfsg-1) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up d-shlibs (0.75) ...
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up gettext (0.19.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.57-1) ...
Setting up libfile-stripnondeterminism-perl (0.019-1) ...
Setting up libtool (2.4.6-0.1) ...
Setting up libllvm3.6v5:armhf (1:3.6.2-3) ...
Setting up libobjc4:armhf (6.1.1-1+rpi1) ...
Setting up libobjc-5-dev:armhf (5.4.0-4) ...
Setting up libclang1-3.6:armhf (1:3.6.2-3) ...
Setting up doxygen (1.8.11-3) ...
Setting up libcdt5 (2.38.0-14) ...
Setting up libcgraph6 (2.38.0-14) ...
Setting up libpixman-1-0:armhf (0.33.6-1) ...
Setting up libxcb-render0:armhf (1.11.1-1) ...
Setting up libxcb-shm0:armhf (1.11.1-1) ...
Setting up libxrender1:armhf (1:0.9.9-2) ...
Setting up libcairo2:armhf (1.14.6-1+b1) ...
Setting up libjpeg62-turbo:armhf (1:1.5.0-1) ...
Setting up libtiff5:armhf (4.0.6-1) ...
Setting up libwebp5:armhf (0.4.4-1+b2) ...
Setting up libxpm4:armhf (1:3.5.11-1+b1) ...
Setting up libgd3:armhf (2.2.1-1) ...
Setting up libltdl7:armhf (2.4.6-0.1) ...
Setting up libthai-data (0.1.25-1) ...
Setting up libdatrie1:armhf (0.2.10-2) ...
Setting up libthai0:armhf (0.1.25-1) ...
Setting up libpango-1.0-0:armhf (1.40.1-1) ...
Setting up libgraphite2-3:armhf (1.3.8-1) ...
Setting up libharfbuzz0b:armhf (1.2.6-2) ...
Setting up libpangoft2-1.0-0:armhf (1.40.1-1) ...
Setting up libpangocairo-1.0-0:armhf (1.40.1-1) ...
Setting up libpathplan4 (2.38.0-14) ...
Setting up libxdot4 (2.38.0-14) ...
Setting up libgvc6 (2.38.0-14) ...
Setting up libgvpr2 (2.38.0-14) ...
Setting up x11-common (1:7.7+15) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:armhf (2:1.0.9-1+b1) ...
Setting up libsm6:armhf (2:1.2.2-1+b1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxmu6:armhf (2:1.1.2-2) ...
Setting up libxaw7:armhf (2:1.0.13-1) ...
Setting up graphviz (2.38.0-14) ...
Setting up libavahi-common-data:armhf (0.6.32-1) ...
Setting up libavahi-common3:armhf (0.6.32-1) ...
Setting up libavahi-client3:armhf (0.6.32-1) ...
Setting up libcups2:armhf (2.1.4-1) ...
Setting up libijs-0.35:armhf (0.35-12) ...
Setting up libjbig2dec0:armhf (0.13-2) ...
Setting up liblcms2-2:armhf (2.7-1) ...
Setting up libopenjp2-7:armhf (2.1.0-2.1) ...
Setting up libgs9-common (9.19~dfsg-1) ...
Setting up libharfbuzz-icu0:armhf (1.2.6-2) ...
Setting up libkpathsea6:armhf (2016.20160513.41080-4) ...
Setting up libnspr4:armhf (2:4.12-2) ...
Setting up libnss3:armhf (2:3.23-2) ...
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up libpoppler61:armhf (0.44.0-3) ...
Setting up libpotrace0 (1.13-2) ...
Setting up libptexenc1:armhf (2016.20160513.41080-4) ...
Setting up librostlab3 (1.0.20-4) ...
Setting up librostlab3-dev (1.0.20-4) ...
Setting up libsynctex1:armhf (2016.20160513.41080-4) ...
Setting up libtexlua52:armhf (2016.20160513.41080-4) ...
Setting up libtexluajit2:armhf (2016.20160513.41080-4) ...
Setting up libxi6:armhf (2:1.7.6-1) ...
Setting up tex-common (6.05) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up preview-latex-style (11.87-3+deb8u1) ...
update-language: texlive-base not installed and configured, doing nothing!
Regenerating '/var/lib/texmf/fmtutil.cnf-DEBIAN'... done.
Regenerating '/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST'... done.
update-fmtutil has updated the following file(s):
	/var/lib/texmf/fmtutil.cnf-DEBIAN
	/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST
If you want to activate the changes in the above file(s),
you should run fmtutil-sys or fmtutil.
Setting up t1utils (1.39-2) ...
Setting up xdg-utils (1.1.1-1) ...
Setting up dh-strip-nondeterminism (0.019-1) ...
Setting up dh-autoreconf (12) ...
Setting up libcupsfilters1:armhf (1.9.0-2) ...
Setting up debhelper (9.20160403) ...
Setting up libcupsimage2:armhf (2.1.4-1) ...
Setting up libgs9 (9.19~dfsg-1+b1) ...
Setting up texlive-binaries (2016.20160513.41080-4) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Processing triggers for tex-common (6.05) ...
update-language: texlive-base not installed and configured, doing nothing!
texlive-base is not ready, skipping fmtutil --all call
Setting up texlive-base (2016.20160623-1) ...
/usr/bin/tl-paper: setting paper size for dvips to a4.
/usr/bin/tl-paper: setting paper size for dvipdfmx to a4.
/usr/bin/tl-paper: setting paper size for xdvi to a4.
/usr/bin/tl-paper: setting paper size for pdftex to a4.
Processing triggers for tex-common (6.05) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Setting up texlive-latex-base (2016.20160623-1) ...
Setting up texlive-fonts-recommended (2016.20160623-1) ...
Processing triggers for tex-common (6.05) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Setting up texlive-latex-recommended (2016.20160623-1) ...
Setting up texlive-pictures (2016.20160623-1) ...
Processing triggers for tex-common (6.05) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-latex-extra (2016.20160623-1) ...
Processing triggers for tex-common (6.05) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up sbuild-build-depends-librostlab-blast-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.22-11) ...
Processing triggers for systemd (230-5) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.7 g++-5_5.4.0-4 gcc-5_5.4.0-4 libc6-dev_2.22-11 libstdc++-4.9-dev_4.9.3-14 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.115 apt_1.2.14 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-15 binutils_2.26.1-1 bison_2:3.0.4.dfsg-1 bsdmainutils_9.0.10 bsdutils_1:2.28-5 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-3 cpp-5_5.4.0-4 d-shlibs_0.75 dash_0.5.8-2.2 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160403 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.019-1 diffutils_1:3.3-3 dmsetup_2:1.02.127-1 doxygen_1.8.11-3 dpkg_1.18.7 dpkg-dev_1.18.7 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1 file_1:5.28-2 findutils_4.6.0+git+20160517-5 flex_2.6.0-11 fontconfig_2.11.0-6.4 fontconfig-config_2.11.0-6.4 fonts-dejavu-core_2.35-1 fuse2fs_1.43.1-1 g++_4:5.3.1-3 g++-5_5.4.0-4 gcc_4:5.3.1-3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5_5.4.0-4 gcc-5-base_5.4.0-4 gcc-6-base_6.1.1-1+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_1.4.20-6 gpgv_1.4.20-6 graphviz_2.38.0-14 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.17 init_1.36 init-system-helpers_1.36 initscripts_2.88dsf-59.7 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10.95-4 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.2.14 libarchive-zip-perl_1.57-1 libasan1_4.9.3-14 libasan2_5.4.0-4 libatomic1_6.1.1-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.5.2-1+rpi1 libaudit1_1:2.5.2-1+rpi1 libavahi-client3_0.6.32-1 libavahi-common-data_0.6.32-1 libavahi-common3_0.6.32-1 libbison-dev_2:3.0.4.dfsg-1 libblkid1_2.28-5 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.22-11 libc-dev-bin_2.22-11 libc6_2.22-11 libc6-dev_2.22-11 libcairo2_1.14.6-1+b1 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-1+rpi1 libcdt5_2.38.0-14 libcgraph6_2.38.0-14 libclang1-3.6_1:3.6.2-3 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcups2_2.1.4-1 libcupsfilters1_1.9.0-2 libcupsimage2_2.1.4-1 libdatrie1_0.2.10-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.213 libdevmapper1.02.1_2:1.02.127-1 libdpkg-perl_1.18.7 libdrm2_2.4.68-1 libedit2_3.1-20150325-1 libexpat1_2.2.0-1 libfakeroot_1.21-1 libfdisk1_2.28-5 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.019-1 libfl-dev_2.6.0-11 libfontconfig1_2.11.0-6.4 libfreetype6_2.6.3-3+b1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-4.9-dev_4.9.3-14 libgcc-5-dev_5.4.0-4 libgcc1_1:6.1.1-1+rpi1 libgcrypt20_1.7.1-2 libgd3_2.2.1-1 libgdbm3_1.8.3-14 libglib2.0-0_2.48.1-1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.4.13-1 libgomp1_6.1.1-1+rpi1 libgpg-error0_1.23-1 libgraphite2-3_1.3.8-1 libgs9_9.19~dfsg-1+b1 libgs9-common_9.19~dfsg-1 libgssapi-krb5-2_1.14.2+dfsg-1 libgts-0.7-5_0.7.6+darcs121130-1.2 libgvc6_2.38.0-14 libgvpr2_2.38.0-14 libharfbuzz-icu0_1.2.6-2 libharfbuzz0b_1.2.6-2 libhogweed4_3.2-1 libice6_2:1.0.9-1+b1 libicu55_55.1-7 libidn11_1.32-3.1 libijs-0.35_0.35-12 libisl15_0.17.1-1 libjbig0_2.1-3.1 libjbig2dec0_0.13-2 libjpeg62-turbo_1:1.5.0-1 libk5crypto3_1.14.2+dfsg-1 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 libkpathsea6_2016.20160513.41080-4 libkrb5-3_1.14.2+dfsg-1 libkrb5support0_1.14.2+dfsg-1 liblcms2-2_2.7-1 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 libllvm3.6v5_1:3.6.2-3 libltdl7_2.4.6-0.1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.28-2 libmount1_2.28-5 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160319-2 libncursesw5_6.0+20160319-2 libnettle6_3.2-1 libnspr4_2:4.12-2 libnss3_2:3.23-2 libobjc-5-dev_5.4.0-4 libobjc4_6.1.1-1+rpi1 libopenjp2-7_2.1.0-2.1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpango-1.0-0_1.40.1-1 libpangocairo-1.0-0_1.40.1-1 libpangoft2-1.0-0_1.40.1-1 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpathplan4_2.38.0-14 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libpixman-1-0_0.33.6-1 libpng12-0_1.2.54-6 libpng16-16_1.6.23-1 libpoppler61_0.44.0-3 libpotrace0_1.13-2 libprocps3_2:3.3.9-9 libprocps5_2:3.3.11-3 libptexenc1_2016.20160513.41080-4 libpython-stdlib_2.7.11-2 libpython2.7-minimal_2.7.12-1 libpython2.7-stdlib_2.7.12-1 libreadline6_6.3-8+b3 librostlab3_1.0.20-4 librostlab3-dev_1.0.20-4 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-3 libsm6_2:1.2.2-1+b1 libsmartcols1_2.28-5 libsqlite3-0_3.13.0-1 libss2_1.43.1-1 libssl1.0.2_1.0.2h-1 libstdc++-4.9-dev_4.9.3-14 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 libsynctex1_2016.20160513.41080-4 libsystemd0_230-5 libtasn1-6_4.8-1 libtexlua52_2016.20160513.41080-4 libtexluajit2_2016.20160513.41080-4 libthai-data_0.1.25-1 libthai0_0.1.25-1 libtiff5_4.0.6-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-2 libtool_2.4.6-0.1 libubsan0_6.1.1-1+rpi1 libudev1_230-5 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5 libwebp5_0.4.4-1+b2 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-render0_1.11.1-1 libxcb-shm0_1.11.1-1 libxcb1_1.11.1-1 libxdmcp6_1:1.1.2-1.1 libxdot4_2.38.0-14 libxext6_2:1.3.3-1 libxi6_2:1.7.6-1 libxml2_2.9.3+dfsg1-1.2 libxmu6_2:1.1.2-2 libxpm4_1:3.5.11-1+b1 libxrender1_1:0.9.9-2 libxt6_1:1.1.5-1 libzzip-0-13_0.13.62-3 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160601+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.06-1 mawk_1.3.3-17 mime-support_3.60 mount_2.28-5 multiarch-support_2.22-11 nano_2.6.0-1 ncurses-base_6.0+20160319-2 ncurses-bin_6.0+20160319-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 po-debconf_1.0.19 poppler-data_0.4.7-7 preview-latex-style_11.87-3+deb8u1 procps_2:3.3.11-3 python_2.7.11-2 python-minimal_2.7.11-2 python2.7_2.7.12-1 python2.7-minimal_2.7.12-1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librostlab-blast-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_230-5 systemd-sysv_230-5 sysv-rc_2.88dsf-59.7 sysvinit-utils_2.88dsf-59.7 t1utils_1.39-2 tar_1.29-1+rpi1 tex-common_6.05 texlive-base_2016.20160623-1 texlive-binaries_2016.20160513.41080-4 texlive-fonts-recommended_2016.20160623-1 texlive-latex-base_2016.20160623-1 texlive-latex-extra_2016.20160623-1 texlive-latex-recommended_2016.20160623-1 texlive-pictures_2016.20160623-1 tzdata_2016e-1 ucf_3.0036 udev_230-5 util-linux_2.28-5 x11-common_1:7.7+15 xdg-utils_1.1.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Jul  6 07:20:25 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./librostlab-blast_1.0.1-7.dsc
dpkg-source: info: extracting librostlab-blast in librostlab-blast-1.0.1
dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz
dpkg-source: info: unpacking librostlab-blast_1.0.1-7.debian.tar.xz
dpkg-source: info: applying reproducible.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-5f8bb4f2-b3ff-4457-b2b9-b5d66c930b68
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package librostlab-blast
dpkg-buildpackage: info: source version 1.0.1-7
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build librostlab-blast-1.0.1
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --parallel --with autoreconf
   dh_testdir -O--parallel
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean --parallel
rm -f lib/librostlab-blast.tag
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--parallel
   dh_clean -O--parallel
 debian/rules build-arch
dh build-arch --parallel --with autoreconf
   dh_testdir -a -O--parallel
   dh_update_autotools_config -a -O--parallel
   dh_autoreconf -a -O--parallel
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:7: installing './compile'
configure.ac:5: installing './missing'
lib/Makefile.am: installing './depcomp'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure --parallel -- --enable-doxygen-dot --enable-doxygen-pdf
	./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for bison... bison -y
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... -lfl
checking whether yytext is a pointer... yes
checking rostlab/aux_functions.h usability... yes
checking rostlab/aux_functions.h presence... yes
checking for rostlab/aux_functions.h... yes
checking rostlab/rostlab_stdexcept.h usability... yes
checking rostlab/rostlab_stdexcept.h presence... yes
checking for rostlab/rostlab_stdexcept.h... yes
checking for doxygen... /usr/bin/doxygen
checking for perl... /usr/bin/perl
checking for dot... /usr/bin/dot
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for egrep... /bin/egrep
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating lib/Makefile
config.status: creating lib/Doxyfile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build --parallel
	make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make  all-recursive
make[3]: Entering directory '/<<PKGBUILDDIR>>'
Making all in lib
make[4]: Entering directory '/<<PKGBUILDDIR>>/lib'
mkdir -p rostlab
/bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex  
/bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y  
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:22.9-17: warning: deprecated directive, use '%define api.namespace rostlab::blast' [-Wdeprecated]
 %define namespace "rostlab::blast"
         ^^^^^^^^^
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:22.9-17: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated]
 %define namespace "rostlab::blast"
         ^^^^^^^^^
updating rostlab/blast-parser-location.h
updating rostlab/blast-parser-position.h
updating rostlab/blast-parser-stack.h
updating rostlab/blast-parser-parser.h
sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp
sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h
sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h
make  all-am
make[5]: Entering directory '/<<PKGBUILDDIR>>/lib'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp
\
 \
/bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe 
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c blast-parser-driver.cpp  -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c blast-parser-parser.cpp  -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f 'librostlab_blast_la-blast-parser-scanner.cpp' || echo './'`librostlab_blast_la-blast-parser-scanner.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c librostlab_blast_la-blast-parser-scanner.cpp  -fPIC -DPIC -o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c blast-parser-driver.cpp -fPIE -o librostlab_blast_la-blast-parser-driver.o >/dev/null 2>&1
librostlab_blast_la-blast-parser-scanner.cpp: In function 'int yy_get_next_buffer(yyscan_t)':
librostlab_blast_la-blast-parser-scanner.cpp:101314:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if ((int) (yyg->yy_n_chars + number_to_move) > YY_CURRENT_BUFFER_LVALUE->yy_buf_size) {
                                               ^
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c blast-parser-parser.cpp -fPIE -o librostlab_blast_la-blast-parser-parser.o >/dev/null 2>&1
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c librostlab_blast_la-blast-parser-scanner.cpp -fPIE -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o >/dev/null 2>&1
/bin/bash ../libtool  --tag=CXX   --mode=link g++ -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -version-info 0:0:0 -Wall -fPIE -pie -Wl,-z,relro -Wl,-z,now -o librostlab-blast.la -rpath /usr/lib/arm-linux-gnueabihf librostlab_blast_la-blast-parser-driver.lo librostlab_blast_la-blast-parser-parser.lo librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo  
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/5/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/5/crtbeginS.o  .libs/librostlab_blast_la-blast-parser-driver.o .libs/librostlab_blast_la-blast-parser-parser.o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o   -L/usr/lib/gcc/arm-linux-gnueabihf/5 -L/usr/lib/gcc/arm-linux-gnueabihf/5/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/5/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/5/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/5/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,librostlab-blast.so.0 -o .libs/librostlab-blast.so.0.0.0
libtool: link: (cd ".libs" && rm -f "librostlab-blast.so.0" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so.0")
libtool: link: (cd ".libs" && rm -f "librostlab-blast.so" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so")
libtool: link: ar cru .libs/librostlab-blast.a  librostlab_blast_la-blast-parser-driver.o librostlab_blast_la-blast-parser-parser.o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/librostlab-blast.a
libtool: link: ( cd ".libs" && rm -f "librostlab-blast.la" && ln -s "../librostlab-blast.la" "librostlab-blast.la" )
make[5]: Leaving directory '/<<PKGBUILDDIR>>/lib'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/lib'
make[4]: Entering directory '/<<PKGBUILDDIR>>'
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C lib doxygen-doc
make[2]: Entering directory '/<<PKGBUILDDIR>>/lib'
rm -rf ../doxygen-doc
SRCDIR='.' PROJECT='librostlab-blast' DOCDIR='../doxygen-doc' VERSION='1.0.1' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='YES' /usr/bin/doxygen ./Doxyfile
warning: Tag `SYMBOL_CACHE_SIZE' at line 290 of file `./Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag `SHOW_DIRECTORIES' at line 490 of file `./Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag `HTML_ALIGN_MEMBERS' at line 847 of file `./Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag `USE_INLINE_TREES' at line 1032 of file `./Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag `XML_SCHEMA' at line 1257 of file `./Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag `XML_DTD' at line 1263 of file `./Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: doxygen no longer ships with the FreeSans font.
You may want to clear or change DOT_FONTNAME.
Otherwise you run the risk that the wrong font is being used for dot generated graphs.
error: Tag file `/usr/share/doc/librostlab-doc/librostlab.tag' does not exist or is not a file. Skipping it...
/<<PKGBUILDDIR>>/lib/rostlab/blast-parser-location.h:34: warning: the name `location.hh' supplied as the second argument in the \file statement is not an input file
/<<PKGBUILDDIR>>/lib/rostlab/blast-parser-parser.h:34: warning: the name `y.tab.h' supplied as the second argument in the \file statement is not an input file
/<<PKGBUILDDIR>>/lib/rostlab/blast-parser-position.h:34: warning: the name `position.hh' supplied as the second argument in the \file statement is not an input file
/<<PKGBUILDDIR>>/lib/rostlab/blast-parser-stack.h:34: warning: the name `stack.hh' supplied as the second argument in the \file statement is not an input file
Notice: Output directory `../doxygen-doc' does not exist. I have created it for you.
Searching for include files...
Searching for example files...
Searching for files in directory /<<PKGBUILDDIR>>/examples
Searching for images...
Searching for dot files...
Searching for msc files...
Searching for dia files...
Searching for files to exclude
Searching INPUT for files to process...
Searching for files in directory /<<PKGBUILDDIR>>/lib/rostlab
Reading and parsing tag files
Parsing files
Preprocessing /<<PKGBUILDDIR>>/lib/rostlab/blast-parser-driver.h...
Parsing file /<<PKGBUILDDIR>>/lib/rostlab/blast-parser-driver.h...
Preprocessing /<<PKGBUILDDIR>>/lib/rostlab/blast-parser-location.h...
Parsing file /<<PKGBUILDDIR>>/lib/rostlab/blast-parser-location.h...
Preprocessing /<<PKGBUILDDIR>>/lib/rostlab/blast-parser-parser.h...
Parsing file /<<PKGBUILDDIR>>/lib/rostlab/blast-parser-parser.h...
Preprocessing /<<PKGBUILDDIR>>/lib/rostlab/blast-parser-position.h...
Parsing file /<<PKGBUILDDIR>>/lib/rostlab/blast-parser-position.h...
Preprocessing /<<PKGBUILDDIR>>/lib/rostlab/blast-parser-stack.h...
Parsing file /<<PKGBUILDDIR>>/lib/rostlab/blast-parser-stack.h...
Preprocessing /<<PKGBUILDDIR>>/lib/rostlab/blast-result.h...
Parsing file /<<PKGBUILDDIR>>/lib/rostlab/blast-result.h...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Associating documentation with classes...
Computing nesting relations for classes...
Building example list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Creating members for template instances...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Sorting lists...
Freeing entry tree
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Computing dependencies between directories...
Generating citations page...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Generating style sheet...
Generating search indices...
Generating example documentation...
Generating file sources...
Generating code for file rostlab/blast-parser-driver.h...
Generating code for file rostlab/blast-parser-location.h...
Generating code for file rostlab/blast-parser-parser.h...
Generating code for file rostlab/blast-parser-position.h...
Generating code for file rostlab/blast-parser-stack.h...
Generating code for file rostlab/blast-result.h...
Generating file documentation...
Generating docs for file rostlab/blast-parser-driver.h...
Generating docs for file rostlab/blast-parser-location.h...
Generating docs for file rostlab/blast-parser-parser.h...
Generating docs for file rostlab/blast-parser-position.h...
Generating docs for file rostlab/blast-parser-stack.h...
Generating docs for file rostlab/blast-result.h...
Generating page documentation...
Generating group documentation...
Generating class documentation...
Generating namespace index...
Generating docs for namespace rostlab
Generating docs for namespace rostlab::blast
Generating docs for compound rostlab::blast::hit...
Generating docs for compound rostlab::blast::hsp...
Generating docs for compound rostlab::blast::location...
Generating docs for compound rostlab::blast::oneline...
Generating docs for compound rostlab::blast::parser...
Generating docs for nested compound rostlab::blast::parser::basic_symbol...
Generating docs for nested compound rostlab::blast::parser::by_type...
Generating docs for nested compound rostlab::blast::parser::semantic_type...
Generating docs for nested compound rostlab::blast::parser::syntax_error...
Generating docs for nested compound rostlab::blast::parser::token...
Generating docs for compound rostlab::blast::parser_driver...
Generating docs for compound rostlab::blast::parser_error...
Generating docs for compound rostlab::blast::position...
Generating docs for compound rostlab::blast::result...
Generating docs for compound rostlab::blast::round...
Generating docs for compound rostlab::blast::slice...
Generating docs for compound rostlab::blast::stack...
Generating graph info page...
Generating directory documentation...
Generating index page...
Generating page index...
Generating module index...
Generating namespace index...
Generating namespace member index...
Generating annotated compound index...
Generating alphabetical compound index...
Generating hierarchical class index...
Generating graphical class hierarchy...
Generating member index...
Generating file index...
Generating file member index...
Generating example index...
finalizing index lists...
writing tag file...
Running dot...
Generating dot graphs using 5 parallel threads...
Running dot for graph 1/56
Running dot for graph 2/56
Running dot for graph 3/56
Running dot for graph 4/56
Running dot for graph 5/56
Running dot for graph 6/56
Running dot for graph 7/56
Running dot for graph 8/56
Running dot for graph 9/56
Running dot for graph 10/56
Running dot for graph 11/56
Running dot for graph 12/56
Running dot for graph 13/56
Running dot for graph 14/56
Running dot for graph 15/56
Running dot for graph 16/56
Running dot for graph 17/56
Running dot for graph 18/56
Running dot for graph 19/56
Running dot for graph 20/56
Running dot for graph 21/56
Running dot for graph 22/56
Running dot for graph 23/56
Running dot for graph 24/56
Running dot for graph 25/56
Running dot for graph 26/56
Running dot for graph 27/56
Running dot for graph 28/56
Running dot for graph 29/56
Running dot for graph 30/56
Running dot for graph 31/56
Running dot for graph 32/56
Running dot for graph 33/56
Running dot for graph 34/56
Running dot for graph 35/56
Running dot for graph 36/56
Running dot for graph 37/56
Running dot for graph 38/56
Running dot for graph 39/56
Running dot for graph 40/56
Running dot for graph 41/56
Running dot for graph 42/56
Running dot for graph 43/56
Running dot for graph 44/56
Running dot for graph 45/56
Running dot for graph 46/56
Running dot for graph 47/56
Running dot for graph 48/56
Running dot for graph 49/56
Running dot for graph 50/56
Running dot for graph 51/56
Running dot for graph 52/56
Running dot for graph 53/56
Running dot for graph 54/56
Running dot for graph 55/56
Running dot for graph 56/56
Patching output file 1/21
Patching output file 2/21
Patching output file 3/21
Patching output file 4/21
Patching output file 5/21
Patching output file 6/21
Patching output file 7/21
Patching output file 8/21
Patching output file 9/21
Patching output file 10/21
Patching output file 11/21
Patching output file 12/21
Patching output file 13/21
Patching output file 14/21
Patching output file 15/21
Patching output file 16/21
Patching output file 17/21
Patching output file 18/21
Patching output file 19/21
Patching output file 20/21
Patching output file 21/21
lookup cache used 473/65536 hits=3440 misses=509
finished...
cd ../doxygen-doc/latex; \
rm -f *.aux *.toc *.idx *.ind *.ilg *.log *.out; \
/usr/bin/pdflatex refman.tex; \
/usr/bin/makeindex refman.idx; \
/usr/bin/pdflatex refman.tex; \
countdown=5; \
while /bin/egrep 'Rerun (LaTeX|to get cross-references right)' \
                  refman.log > /dev/null 2>&1 \
   && test $countdown -gt 0; do \
    /usr/bin/pdflatex refman.tex; \
    countdown=`expr $countdown - 1`; \
done; \
mv refman.pdf ../librostlab-blast.pdf
This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2016/03/31> patch level 1
Babel <3.9r> and hyphenation patterns for 3 language(s) loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty

Package fixltx2e Warning: fixltx2e is not required with releases after 2015
(fixltx2e)                All fixes are now in the LaTeX kernel.
(fixltx2e)                See the latexrelease package for details.

) (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty) (./doxygen.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)
(/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty))
(/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tabu/tabu.sty
(/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/multirow/multirow.sty))
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/adjustbox.sty
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/adjcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/trimclip.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/collectbox/collectbox.sty)
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/tc-pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/ifoddpage/ifoddpage.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/wasysym/wasysym.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/helvet.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/courier.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/usr/share/texlive/texmf-dist/tex/latex/sectsty/sectsty.sty)
(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)
(/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tocloft/tocloft.sty)
Writing index file refman.idx
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/backref.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))

Package hyperref Message: Driver: hpdftex.

(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty)
(/usr/share/texlive/texmf-dist/tex/latex/caption/ltcaption.sty))
No file refman.aux.
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(/usr/share/texlive/texmf-dist/tex/latex/wasysym/uwasy.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] [2] [3] [4]
Chapter 1.
(./namespaces.tex

LaTeX Warning: Reference `namespacerostlab' on page 1 undefined on input line 3
.


LaTeX Warning: Reference `namespacerostlab_1_1blast' on page 1 undefined on inp
ut line 4.

) [1] [2]
Chapter 2.
(./hierarchy.tex

LaTeX Warning: Reference `structrostlab_1_1blast_1_1parser_1_1basic__symbol' on
 page 3 undefined on input line 3.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1parser_1_1by__type' on page
 3 undefined on input line 4.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1hit' on page 3 undefined on
 input line 5.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1hsp' on page 3 undefined on
 input line 6.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1location' on page 3 undefine
d on input line 7.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1oneline' on page 3 undefine
d on input line 8.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1parser' on page 3 undefined 
on input line 9.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1parser__driver' on page 3 un
defined on input line 10.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1position' on page 3 undefine
d on input line 11.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1result' on page 3 undefined
 on input line 12.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1round' on page 3 undefined 
on input line 13.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1parser__error' on page 3 und
efined on input line 15.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1parser_1_1syntax__error' on
 page 3 undefined on input line 18.


LaTeX Warning: Reference `unionrostlab_1_1blast_1_1parser_1_1semantic__type' on
 page 3 undefined on input line 20.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1slice' on page 3 undefined o
n input line 21.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1stack' on page 3 undefined o
n input line 22.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1stack' on page 3 undefined o
n input line 23.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1parser_1_1token' on page 3 
undefined on input line 24.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1parser_1_1basic__symbol' on
 page 3 undefined on input line 26.

) [3] [4]
Chapter 3.
(./annotated.tex

LaTeX Warning: Reference `structrostlab_1_1blast_1_1parser_1_1basic__symbol' on
 page 5 undefined on input line 3.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1parser_1_1by__type' on page
 5 undefined on input line 4.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1hit' on page 5 undefined on
 input line 5.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1hsp' on page 5 undefined on
 input line 6.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1location' on page 5 undefine
d on input line 7.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1oneline' on page 5 undefine
d on input line 8.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1parser' on page 5 undefined 
on input line 9.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1parser__driver' on page 5 un
defined on input line 10.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1parser__error' on page 5 und
efined on input line 11.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1position' on page 5 undefine
d on input line 12.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1result' on page 5 undefined
 on input line 13.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1round' on page 5 undefined 
on input line 14.


LaTeX Warning: Reference `unionrostlab_1_1blast_1_1parser_1_1semantic__type' on
 page 5 undefined on input line 15.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1slice' on page 5 undefined o
n input line 16.


LaTeX Warning: Reference `classrostlab_1_1blast_1_1stack' on page 5 undefined o
n input line 17.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1parser_1_1syntax__error' on
 page 5 undefined on input line 18.


LaTeX Warning: Reference `structrostlab_1_1blast_1_1parser_1_1token' on page 5 
undefined on input line 19.

) [5] [6]
Chapter 4.
(./files.tex

LaTeX Warning: Reference `blast-parser-driver_8h' on page 7 undefined on input 
line 3.


LaTeX Warning: Reference `blast-parser-location_8h' on page 7 undefined on inpu
t line 4.


LaTeX Warning: Reference `blast-parser-parser_8h' on page 7 undefined on input 
line 5.


LaTeX Warning: Reference `blast-parser-position_8h' on page 7 undefined on inpu
t line 6.


LaTeX Warning: Reference `blast-parser-stack_8h' on page 7 undefined on input l
ine 7.


LaTeX Warning: Reference `blast-result_8h' on page 7 undefined on input line 8.


) [7] [8]
Chapter 5.
(./namespacerostlab.tex
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd)

LaTeX Font Warning: Font shape `T1/pcr/bc/n' undefined
(Font)              using `T1/pcr/m/n' instead on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 47.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 47.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 47.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 47.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 47.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 47.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 79.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 79.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 79.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 79.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 79.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 79.

[9]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 95.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 95.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 95.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 95.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 95.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 95.

) (./namespacerostlab_1_1blast.tex [10]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 75.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 75.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 91.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 91.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 107.

[11]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 155.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 155.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 171.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 187.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 235.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 251.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 267.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 267.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 267.

[12]

Package longtable Warning: Column widths have changed
(longtable)                in table 5.1 on input line 278.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 290.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 290.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 290.


Package longtable Warning: Column widths have changed
(longtable)                in table 5.2 on input line 301.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 313.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 313.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 329.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 329.

) [13] [14]
Chapter 6.
(./structrostlab_1_1blast_1_1parser_1_1basic__symbol.tex

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


<structrostlab_1_1blast_1_1parser_1_1basic__symbol__inherit__graph.pdf, id=278,
 214.8025pt x 167.62625pt>
<use structrostlab_1_1blast_1_1parser_1_1basic__symbol__inherit__graph.pdf>
<structrostlab_1_1blast_1_1parser_1_1basic__symbol__coll__graph.pdf, id=279, 39
7.485pt x 268.00125pt>
<use structrostlab_1_1blast_1_1parser_1_1basic__symbol__coll__graph.pdf>
Underfull \vbox (badness 10000) has occurred while \output is active [15 <./str
uctrostlab_1_1blast_1_1parser_1_1basic__symbol__inherit__graph.pdf>] [16 <./str
uctrostlab_1_1blast_1_1parser_1_1basic__symbol__coll__graph.pdf>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 77.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 95.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 106.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 106.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 106.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 118.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 118.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 118.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 118.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 142.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 178.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 178.

[17]) (./structrostlab_1_1blast_1_1parser_1_1by__type.tex [18]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 69.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 80.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 80.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 80.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 91.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 91.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 116.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 116.

[19]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 138.

) (./structrostlab_1_1blast_1_1hit.tex [20]

LaTeX Font Warning: Font shape `T1/pcr/bc/it' undefined
(Font)              using `T1/pcr/bc/n' instead on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.

) (./structrostlab_1_1blast_1_1hsp.tex [21] [22]
Underfull \hbox (badness 1253) in paragraph at lines 98--99
[]\T1/phv/m/n/10 Copied from ncbi-tools6-6.[]1.[]20090809/algo/blast/compositio
n[]_[]adjustment/composition[]_[]constants.h in or-der to

Underfull \hbox (badness 1253) in paragraph at lines 108--108
[]\T1/phv/m/n/10 Copied from ncbi-tools6-6.[]1.[]20090809/algo/blast/compositio
n[]_[]adjustment/composition[]_[]constants.h in or-der to

Underfull \hbox (badness 10000) detected at line 109
[][][]
[23]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 162.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 162.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 177.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 177.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 193.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 200.

[24]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 221.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 246.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 257.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 268.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 279.

[25]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 290.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 301.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 308.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 319.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 330.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 341.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 352.

) (./classrostlab_1_1blast_1_1location.tex [26]
<classrostlab_1_1blast_1_1location__coll__graph.pdf, id=577, 202.7575pt x 178.6
675pt> <use classrostlab_1_1blast_1_1location__coll__graph.pdf> [27 <./classros
tlab_1_1blast_1_1location__coll__graph.pdf>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 67.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 67.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 82.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 134.

[28]) (./structrostlab_1_1blast_1_1oneline.tex

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.

[29]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 62.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 62.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 62.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 83.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 101.

) (./classrostlab_1_1blast_1_1parser.tex [30] [31]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 76.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 76.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 87.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 98.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 98.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 109.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 120.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 120.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.

[32]
Underfull \hbox (badness 10000) detected at line 149
[][][]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 169.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 169.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 169.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 169.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 190.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 190.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 190.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 201.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 201.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 201.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 213.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 213.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 213.

[33]

Package longtable Warning: Column widths have changed
(longtable)                in table 6.1 on input line 220.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 227.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 227.


Underfull \hbox (badness 10000) detected at line 239
[][][]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 248.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 248.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 248.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 248.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 259.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 259.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 259.

) (./classrostlab_1_1blast_1_1parser__driver.tex [34]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 75.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 101.

[35]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 116.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 116.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 116.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 116.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 116.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 173.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 184.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 184.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 184.

[36]) (./classrostlab_1_1blast_1_1parser__error.tex
<classrostlab_1_1blast_1_1parser__error__inherit__graph.pdf, id=828, 202.7575pt
 x 167.62625pt>
<use classrostlab_1_1blast_1_1parser__error__inherit__graph.pdf>
<classrostlab_1_1blast_1_1parser__error__coll__graph.pdf, id=829, 202.7575pt x 
167.62625pt> <use classrostlab_1_1blast_1_1parser__error__coll__graph.pdf>
[37 <./classrostlab_1_1blast_1_1parser__error__inherit__graph.pdf> <./classrost
lab_1_1blast_1_1parser__error__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1blast_1_1parser__erro
r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a
 single page
>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 48.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 48.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 48.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 48.

) (./classrostlab_1_1blast_1_1position.tex

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 54.

[38]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 89.

) (./structrostlab_1_1blast_1_1result.tex [39] [40]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 107.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 125.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 136.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.

[41]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 187.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 198.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 209.

[42]) (./structrostlab_1_1blast_1_1round.tex [43]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 81.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 92.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 110.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 121.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 132.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 132.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 143.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 143.

[44]) (./unionrostlab_1_1blast_1_1parser_1_1semantic__type.tex)
(./classrostlab_1_1blast_1_1slice.tex [45]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 39.

) (./classrostlab_1_1blast_1_1stack.tex

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.

[46]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 52.

[47]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 164.

[48]) (./structrostlab_1_1blast_1_1parser_1_1syntax__error.tex
<structrostlab_1_1blast_1_1parser_1_1syntax__error__inherit__graph.pdf, id=1112
, 196.735pt x 167.62625pt>
<use structrostlab_1_1blast_1_1parser_1_1syntax__error__inherit__graph.pdf>
<structrostlab_1_1blast_1_1parser_1_1syntax__error__coll__graph.pdf, id=1113, 3
25.215pt x 256.96pt>
<use structrostlab_1_1blast_1_1parser_1_1syntax__error__coll__graph.pdf>
[49 <./structrostlab_1_1blast_1_1parser_1_1syntax__error__inherit__graph.pdf>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 59.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 59.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 59.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 59.

) (./structrostlab_1_1blast_1_1parser_1_1token.tex [50 <./structrostlab_1_1blas
t_1_1parser_1_1syntax__error__coll__graph.pdf>]
Underfull \hbox (badness 10000) detected at line 64
[][][]
[51]) [52]
Chapter 7.
(./blast-parser-driver_8h.tex
<blast-parser-driver_8h__incl.pdf, id=1228, 921.4425pt x 369.38pt>
<use blast-parser-driver_8h__incl.pdf> [53 <./blast-parser-driver_8h__incl.pdf>
]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 48.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 81.

) (./blast-parser-location_8h.tex
<blast-parser-location_8h__incl.pdf, id=1259, 283.0575pt x 234.8775pt>
<use blast-parser-location_8h__incl.pdf> [54]
<blast-parser-location_8h__dep__incl.pdf, id=1274, 190.7125pt x 245.91875pt>
<use blast-parser-location_8h__dep__incl.pdf> [55 <./blast-parser-location_8h__
incl.pdf> <./blast-parser-location_8h__dep__incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./blast-parser-location_8h__dep__incl.p
df): PDF inclusion: multiple pdfs with page group included in a single page
>]) (./blast-parser-parser_8h.tex
<blast-parser-parser_8h__incl.pdf, id=1310, 786.94pt x 302.12875pt>
<use blast-parser-parser_8h__incl.pdf>
<blast-parser-parser_8h__dep__incl.pdf, id=1311, 190.7125pt x 178.6675pt>
<use blast-parser-parser_8h__dep__incl.pdf> [56 <./blast-parser-parser_8h__incl
.pdf>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 75.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 86.

[57 <./blast-parser-parser_8h__dep__incl.pdf>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 93.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 93.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 100.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 100.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 107.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 107.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 107.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 107.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 114.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 114.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 114.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 114.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 125.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 125.

) (./blast-parser-position_8h.tex
<blast-parser-position_8h__incl.pdf, id=1374, 283.0575pt x 167.62625pt>
<use blast-parser-position_8h__incl.pdf> [58]
<blast-parser-position_8h__dep__incl.pdf, id=1389, 190.7125pt x 313.17pt>
<use blast-parser-position_8h__dep__incl.pdf> [59 <./blast-parser-position_8h__
incl.pdf> <./blast-parser-position_8h__dep__incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./blast-parser-position_8h__dep__incl.p
df): PDF inclusion: multiple pdfs with page group included in a single page
>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 61.

) (./blast-parser-stack_8h.tex
<blast-parser-stack_8h__incl.pdf, id=1424, 190.7125pt x 167.62625pt>
<use blast-parser-stack_8h__incl.pdf>
<blast-parser-stack_8h__dep__incl.pdf, id=1425, 190.7125pt x 245.91875pt>
<use blast-parser-stack_8h__dep__incl.pdf> [60 <./blast-parser-stack_8h__incl.p
df>]) (./blast-result_8h.tex
<blast-result_8h__incl.pdf, id=1449, 483.8075pt x 156.585pt>
<use blast-result_8h__incl.pdf>
<blast-result_8h__dep__incl.pdf, id=1450, 234.8775pt x 234.8775pt>
<use blast-result_8h__dep__incl.pdf> [61 <./blast-parser-stack_8h__dep__incl.pd
f> <./blast-result_8h__incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./blast-result_8h__incl.pdf): PDF inclu
sion: multiple pdfs with page group included in a single page
>]) [62 <./blast-result_8h__dep__incl.pdf>]
No file refman.ind.

Package longtable Warning: Table widths have changed. Rerun LaTeX.

(./refman.aux)

Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.


LaTeX Font Warning: Some font shapes were not available, defaults substituted.


LaTeX Warning: There were undefined references.


LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{blast\\unhbox\040\\voidb@x\040\\kern\040\\z@\040\\char\040`\\discretionary\040
{-}{}{}parser\\unhbox\040\\voidb@x\040\\kern\040\\z@\040\\char\040`\\discretion
ary\040{-}{}{}driver_8h} has been referenced but does not exist, replaced by a 
fixed one

{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmsy9.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb></usr/share/
texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8ac.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/helvetic/uhvbo8a.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/urw/helvetic/uhvbo8ac.pfb></usr/share/texlive/texmf-dist/fonts/type1/u
rw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/
uhvro8a.pfb>
Output written on refman.pdf (66 pages, 354175 bytes).
Transcript written on refman.log.
This is makeindex, version 2.15 [TeX Live 2016] (kpathsea + Thai support).
Scanning input file refman.idx....done (447 entries accepted, 0 rejected).
Sorting entries......done (4033 comparisons).
Generating output file refman.ind....done (655 lines written, 0 warnings).
Output written in refman.ind.
Transcript written in refman.ilg.
This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2016/03/31> patch level 1
Babel <3.9r> and hyphenation patterns for 3 language(s) loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty

Package fixltx2e Warning: fixltx2e is not required with releases after 2015
(fixltx2e)                All fixes are now in the LaTeX kernel.
(fixltx2e)                See the latexrelease package for details.

) (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty) (./doxygen.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)
(/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty))
(/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tabu/tabu.sty
(/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/multirow/multirow.sty))
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/adjustbox.sty
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/adjcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/trimclip.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/collectbox/collectbox.sty)
(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/tc-pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/ifoddpage/ifoddpage.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/wasysym/wasysym.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/helvet.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/courier.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/usr/share/texlive/texmf-dist/tex/latex/sectsty/sectsty.sty)
(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)
(/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tocloft/tocloft.sty)
Writing index file refman.idx
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/backref.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))

Package hyperref Message: Driver: hpdftex.

(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty)
(/usr/share/texlive/texmf-dist/tex/latex/caption/ltcaption.sty)) (./refman.aux)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./refman.out) (./refman.out)
(/usr/share/texlive/texmf-dist/tex/latex/wasysym/uwasy.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] [2] (./refman.toc [3]
Underfull \hbox (badness 2126) in paragraph at lines 44--44
 [][] [][][]\T1/phv/m/n/10 basic[]_[]symbol(typename Base[]::kind[]_[]type t, c
onst semantic[]_[]type &v, const 
[4] [5] [6] [7] [8] [9] [10] [11]) [12]
Chapter 1.
(./namespaces.tex) [1] [2]
Chapter 2.
(./hierarchy.tex) [3] [4]
Chapter 3.
(./annotated.tex) [5] [6]
Chapter 4.
(./files.tex) [7] [8]
Chapter 5.
(./namespacerostlab.tex
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd)

LaTeX Font Warning: Font shape `T1/pcr/bc/n' undefined
(Font)              using `T1/pcr/m/n' instead on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 31.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 47.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 47.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 47.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 47.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 47.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 47.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 79.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 79.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 79.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 79.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 79.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 79.

[9]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 95.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 95.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 95.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 95.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 95.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 95.

) (./namespacerostlab_1_1blast.tex [10]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 75.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 75.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 91.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 91.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 107.

[11]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 155.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 155.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 171.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 187.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 235.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 251.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 267.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 267.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 267.

[12]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 290.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 290.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 290.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 313.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 313.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 329.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 329.

) [13] [14]
Chapter 6.
(./structrostlab_1_1blast_1_1parser_1_1basic__symbol.tex

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


<structrostlab_1_1blast_1_1parser_1_1basic__symbol__inherit__graph.pdf, id=1755
, 214.8025pt x 167.62625pt>
<use structrostlab_1_1blast_1_1parser_1_1basic__symbol__inherit__graph.pdf>
<structrostlab_1_1blast_1_1parser_1_1basic__symbol__coll__graph.pdf, id=1756, 3
97.485pt x 268.00125pt>
<use structrostlab_1_1blast_1_1parser_1_1basic__symbol__coll__graph.pdf>
Underfull \vbox (badness 10000) has occurred while \output is active [15 <./str
uctrostlab_1_1blast_1_1parser_1_1basic__symbol__inherit__graph.pdf>] [16 <./str
uctrostlab_1_1blast_1_1parser_1_1basic__symbol__coll__graph.pdf>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 77.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 95.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 106.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 106.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 106.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 118.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 118.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 118.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 118.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 142.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 178.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 178.

[17]) (./structrostlab_1_1blast_1_1parser_1_1by__type.tex [18]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 69.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 80.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 80.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 80.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 91.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 91.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 116.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 116.

[19]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 138.

) (./structrostlab_1_1blast_1_1hit.tex [20]

LaTeX Font Warning: Font shape `T1/pcr/bc/it' undefined
(Font)              using `T1/pcr/bc/n' instead on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 50.

) (./structrostlab_1_1blast_1_1hsp.tex [21] [22]
Underfull \hbox (badness 1253) in paragraph at lines 98--99
[]\T1/phv/m/n/10 Copied from ncbi-tools6-6.[]1.[]20090809/algo/blast/compositio
n[]_[]adjustment/composition[]_[]constants.h in or-der to

Underfull \hbox (badness 1253) in paragraph at lines 108--108
[]\T1/phv/m/n/10 Copied from ncbi-tools6-6.[]1.[]20090809/algo/blast/compositio
n[]_[]adjustment/composition[]_[]constants.h in or-der to

Underfull \hbox (badness 10000) detected at line 109
[][][]
[23]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 137.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 162.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 162.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 177.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 177.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 193.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 200.

[24]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 221.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 246.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 257.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 268.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 279.

[25]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 290.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 301.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 308.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 319.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 330.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 341.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 352.

) (./classrostlab_1_1blast_1_1location.tex [26]
<classrostlab_1_1blast_1_1location__coll__graph.pdf, id=1980, 202.7575pt x 178.
6675pt> <use classrostlab_1_1blast_1_1location__coll__graph.pdf> [27 <./classro
stlab_1_1blast_1_1location__coll__graph.pdf>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 67.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 67.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 82.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 134.

[28]) (./structrostlab_1_1blast_1_1oneline.tex

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 51.

[29]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 62.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 62.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 62.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 83.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 101.

) (./classrostlab_1_1blast_1_1parser.tex [30] [31]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 76.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 76.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 87.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 98.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 98.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 109.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 120.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 120.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.

[32]
Underfull \hbox (badness 10000) detected at line 149
[][][]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 169.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 169.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 169.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 169.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 190.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 190.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 190.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 201.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 201.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 201.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 213.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 213.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 213.

[33]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 227.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 227.


Underfull \hbox (badness 10000) detected at line 239
[][][]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 248.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 248.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 248.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 248.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 259.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 259.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 259.

) (./classrostlab_1_1blast_1_1parser__driver.tex [34]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 75.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 90.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 101.

[35]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 116.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 116.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 116.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 116.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 116.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 131.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 173.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 184.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 184.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 184.

[36]) (./classrostlab_1_1blast_1_1parser__error.tex
<classrostlab_1_1blast_1_1parser__error__inherit__graph.pdf, id=2167, 202.7575p
t x 167.62625pt>
<use classrostlab_1_1blast_1_1parser__error__inherit__graph.pdf>
<classrostlab_1_1blast_1_1parser__error__coll__graph.pdf, id=2168, 202.7575pt x
 167.62625pt> <use classrostlab_1_1blast_1_1parser__error__coll__graph.pdf>
[37 <./classrostlab_1_1blast_1_1parser__error__inherit__graph.pdf> <./classrost
lab_1_1blast_1_1parser__error__coll__graph.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1blast_1_1parser__erro
r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a
 single page
>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 48.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 48.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 48.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 48.

) (./classrostlab_1_1blast_1_1position.tex

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 54.

[38]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 89.

) (./structrostlab_1_1blast_1_1result.tex [39] [40]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 107.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 125.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 136.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 147.

[41]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 187.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 198.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 209.

[42]) (./structrostlab_1_1blast_1_1round.tex [43]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 60.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 81.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 92.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 110.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 121.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 132.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 132.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 143.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 143.

[44]) (./unionrostlab_1_1blast_1_1parser_1_1semantic__type.tex)
(./classrostlab_1_1blast_1_1slice.tex [45]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 39.

) (./classrostlab_1_1blast_1_1stack.tex

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `math shift' on input line 1.

[46]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 52.

[47]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 164.

[48]) (./structrostlab_1_1blast_1_1parser_1_1syntax__error.tex
<structrostlab_1_1blast_1_1parser_1_1syntax__error__inherit__graph.pdf, id=2372
, 196.735pt x 167.62625pt>
<use structrostlab_1_1blast_1_1parser_1_1syntax__error__inherit__graph.pdf>
<structrostlab_1_1blast_1_1parser_1_1syntax__error__coll__graph.pdf, id=2373, 3
25.215pt x 256.96pt>
<use structrostlab_1_1blast_1_1parser_1_1syntax__error__coll__graph.pdf>
[49 <./structrostlab_1_1blast_1_1parser_1_1syntax__error__inherit__graph.pdf>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 59.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 59.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 59.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `alignment tab' on input line 59.

) (./structrostlab_1_1blast_1_1parser_1_1token.tex [50 <./structrostlab_1_1blas
t_1_1parser_1_1syntax__error__coll__graph.pdf>]
Underfull \hbox (badness 10000) detected at line 64
[][][]
[51]) [52]
Chapter 7.
(./blast-parser-driver_8h.tex
<blast-parser-driver_8h__incl.pdf, id=2474, 921.4425pt x 369.38pt>
<use blast-parser-driver_8h__incl.pdf> [53 <./blast-parser-driver_8h__incl.pdf>
]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 48.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 63.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 81.

) (./blast-parser-location_8h.tex
<blast-parser-location_8h__incl.pdf, id=2503, 283.0575pt x 234.8775pt>
<use blast-parser-location_8h__incl.pdf> [54]
<blast-parser-location_8h__dep__incl.pdf, id=2513, 190.7125pt x 245.91875pt>
<use blast-parser-location_8h__dep__incl.pdf> [55 <./blast-parser-location_8h__
incl.pdf> <./blast-parser-location_8h__dep__incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./blast-parser-location_8h__dep__incl.p
df): PDF inclusion: multiple pdfs with page group included in a single page
>]) (./blast-parser-parser_8h.tex
<blast-parser-parser_8h__incl.pdf, id=2549, 786.94pt x 302.12875pt>
<use blast-parser-parser_8h__incl.pdf>
<blast-parser-parser_8h__dep__incl.pdf, id=2550, 190.7125pt x 178.6675pt>
<use blast-parser-parser_8h__dep__incl.pdf> [56 <./blast-parser-parser_8h__incl
.pdf>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 75.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 86.

[57 <./blast-parser-parser_8h__dep__incl.pdf>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 93.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 93.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 100.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 100.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 107.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 107.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 107.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 107.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 114.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 114.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 114.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 114.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 125.


Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 125.

) (./blast-parser-position_8h.tex
<blast-parser-position_8h__incl.pdf, id=2611, 283.0575pt x 167.62625pt>
<use blast-parser-position_8h__incl.pdf> [58]
<blast-parser-position_8h__dep__incl.pdf, id=2616, 190.7125pt x 313.17pt>
<use blast-parser-position_8h__dep__incl.pdf> [59 <./blast-parser-position_8h__
incl.pdf> <./blast-parser-position_8h__dep__incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./blast-parser-position_8h__dep__incl.p
df): PDF inclusion: multiple pdfs with page group included in a single page
>]

Package hyperref Warning: Token not allowed in a PDF string (Unicode):
(hyperref)                removing `subscript' on input line 61.

) (./blast-parser-stack_8h.tex
<blast-parser-stack_8h__incl.pdf, id=2650, 190.7125pt x 167.62625pt>
<use blast-parser-stack_8h__incl.pdf>
<blast-parser-stack_8h__dep__incl.pdf, id=2651, 190.7125pt x 245.91875pt>
<use blast-parser-stack_8h__dep__incl.pdf> [60 <./blast-parser-stack_8h__incl.p
df>]) (./blast-result_8h.tex
<blast-result_8h__incl.pdf, id=2673, 483.8075pt x 156.585pt>
<use blast-result_8h__incl.pdf>
<blast-result_8h__dep__incl.pdf, id=2674, 234.8775pt x 234.8775pt>
<use blast-result_8h__dep__incl.pdf> [61 <./blast-parser-stack_8h__dep__incl.pd
f> <./blast-result_8h__incl.pdf

pdfTeX warning: /usr/bin/pdflatex (file ./blast-result_8h__incl.pdf): PDF inclu
sion: multiple pdfs with page group included in a single page
>]) [62 <./blast-result_8h__dep__incl.pdf>] (./refman.ind
Underfull \hbox (badness 10000) in paragraph at lines 47--49
[]| \T1/phv/m/n/10 Y[]Y[]_[][]I[]G[]N[]O[]R[]E[]_[][]M[]A[]Y[]B[]E[]_[][]U[]N[]
I[]N[]I[]T[]I[]A[]L[]I[]Z[]E[]D[]_[][]B[]E[]G[]IN,
[63] [64] [65] [66] [67] [68]) (./refman.aux)

Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.


LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{blast\\unhbox\040\\voidb@x\040\\kern\040\\z@\040\\char\040`\\discretionary\040
{-}{}{}parser\\unhbox\040\\voidb@x\040\\kern\040\\z@\040\\char\040`\\discretion
ary\040{-}{}{}driver_8h} has been referenced but does not exist, replaced by a 
fixed one

{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmsy9.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb></usr/share/
texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8ac.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/helvetic/uhvbo8a.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/urw/helvetic/uhvbo8ac.pfb></usr/share/texlive/texmf-dist/fonts/type1/u
rw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/
uhvro8a.pfb>
Output written on refman.pdf (80 pages, 414217 bytes).
Transcript written on refman.log.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/lib'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a -O--parallel
	make -j4 check VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making check in lib
make[2]: Entering directory '/<<PKGBUILDDIR>>/lib'
make  check-am
make[3]: Entering directory '/<<PKGBUILDDIR>>/lib'
make[3]: Nothing to be done for 'check-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/lib'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/lib'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 fakeroot debian/rules binary-arch
dh binary-arch --parallel --with autoreconf
   dh_testroot -a -O--parallel
   dh_prep -a -O--parallel
   dh_auto_install -a -O--parallel
	make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making install in lib
make[2]: Entering directory '/<<PKGBUILDDIR>>/lib'
make  install-am
make[3]: Entering directory '/<<PKGBUILDDIR>>/lib'
make[4]: Entering directory '/<<PKGBUILDDIR>>/lib'
 /bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/rostlab'
 /bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
 /bin/bash ../libtool   --mode=install /usr/bin/install -c   librostlab-blast.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
 /bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/rostlab'
 /usr/bin/install -c -m 644 rostlab/blast-parser-location.h rostlab/blast-parser-parser.h rostlab/blast-parser-position.h rostlab/blast-parser-stack.h '/<<PKGBUILDDIR>>/debian/tmp/usr/include/rostlab'
 /usr/bin/install -c -m 644 rostlab/blast-parser-driver.h rostlab/blast-result.h '/<<PKGBUILDDIR>>/debian/tmp/usr/include/rostlab'
libtool: install: /usr/bin/install -c .libs/librostlab-blast.so.0.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so.0 || { rm -f librostlab-blast.so.0 && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so || { rm -f librostlab-blast.so && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so; }; })
libtool: install: /usr/bin/install -c .libs/librostlab-blast.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.la
libtool: install: /usr/bin/install -c .libs/librostlab-blast.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/lib'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/lib'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/lib'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/librostlab-blast/examples'
 /usr/bin/install -c -m 644 examples/converged.ali examples/parseblast.cpp '/<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/librostlab-blast/examples'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
d-shlibmove --commit \
	    --multiarch \
	    --exclude-la \
	    --v5 \
	    --movedev debian/tmp/usr/include/* usr/include \
	    debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf
PKGDEV=librostlab-blast0-dev
PKGSHL=librostlab-blast0v5
install -d -m 755 debian/librostlab-blast0-dev/usr/include
mv debian/tmp/usr/include/rostlab debian/librostlab-blast0-dev/usr/include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_installdocs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installdocs
find debian -name "*.md5" -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installchangelogs -a -O--parallel
   dh_installexamples -a -O--parallel
   dh_lintian -a -O--parallel
   dh_perl -a -O--parallel
   debian/rules override_dh_link
make[1]: Entering directory '/<<PKGBUILDDIR>>'
find debian -name jquery.js -delete
dh_link
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_strip_nondeterminism -a -O--parallel
   debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress -Xlibrostlab-blast.tag
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_fixperms -a -O--parallel
   debian/rules override_dh_strip
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_strip --dbg-package=librostlab-blast0v5-dbg
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_makeshlibs -a -O--parallel
   dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0 found in none of the libraries
   dh_installdeb -a -O--parallel
   dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
   dh_md5sums -a -O--parallel
   dh_builddeb -a -O--parallel
dpkg-deb: building package 'librostlab-blast0v5' in '../librostlab-blast0v5_1.0.1-7_armhf.deb'.
dpkg-deb: building package 'librostlab-blast0-dev' in '../librostlab-blast0-dev_1.0.1-7_armhf.deb'.
dpkg-deb: building package 'librostlab-blast0v5-dbg' in '../librostlab-blast0v5-dbg_1.0.1-7_armhf.deb'.
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../librostlab-blast_1.0.1-7_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build librostlab-blast-1.0.1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160711-2247

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


librostlab-blast_1.0.1-7_armhf.changes:
---------------------------------------

Format: 1.8
Date: Tue, 05 Jul 2016 14:12:46 +0300
Source: librostlab-blast
Binary: librostlab-blast0v5 librostlab-blast0-dev librostlab-blast-doc librostlab-blast0v5-dbg
Architecture: armhf
Version: 1.0.1-7
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Tatiana Malygina <merlettaia@gmail.com>
Description:
 librostlab-blast-doc - very fast C++ library for parsing the output of NCBI BLAST progra
 librostlab-blast0-dev - very fast C++ library for parsing the output of NCBI BLAST progra
 librostlab-blast0v5 - very fast C++ library for parsing the output of NCBI BLAST progra
 librostlab-blast0v5-dbg - debugging symbols for librostlab-blast
Closes: 830105
Changes:
 librostlab-blast (1.0.1-7) unstable; urgency=medium
 .
   [ Tatiana Malygina ]
   * Team upload.
   * add debian/README.test, debian/librostlab-blast0-dev.docs, fix testsuite
 .
   [ Jeremy Bicha ]
   * Have librostlab-blast0-dev depend on librostlab-dev (Closes: #830105)
   * Have autopkgtest depend on build-essential for compile test
Checksums-Sha1:
 d8eee2cf77cf1cb925da9b66a0f418a3dc7e643a 89964 librostlab-blast0-dev_1.0.1-7_armhf.deb
 5f780ed856edc15dae83e61b9c9d55bad46cf36c 298164 librostlab-blast0v5-dbg_1.0.1-7_armhf.deb
 6a729125498e4fcb71af986bf4bec808b2ee769d 74132 librostlab-blast0v5_1.0.1-7_armhf.deb
Checksums-Sha256:
 48dde04c30d9280bdd467c9b9996f98ede0e23020c522caa6209c324f5b4d322 89964 librostlab-blast0-dev_1.0.1-7_armhf.deb
 60f4f8aaeaa8a653dc26524e28da494195a00fd20ac7ab8b76907acea333bf27 298164 librostlab-blast0v5-dbg_1.0.1-7_armhf.deb
 a27e85503050c156ef3ed663342c938fb912bfdab5d38751b9c4464b4799b970 74132 librostlab-blast0v5_1.0.1-7_armhf.deb
Files:
 a67016f5d6db2c279680985f56a702e9 89964 libdevel optional librostlab-blast0-dev_1.0.1-7_armhf.deb
 812b6357ba568786179e39f2ecbc3d24 298164 debug extra librostlab-blast0v5-dbg_1.0.1-7_armhf.deb
 9b92771aa58ed6cd8ccf2297ff2fef51 74132 libs optional librostlab-blast0v5_1.0.1-7_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


librostlab-blast0-dev_1.0.1-7_armhf.deb
---------------------------------------

 new debian package, version 2.0.
 size 89964 bytes: control archive=1148 bytes.
     968 bytes,    24 lines      control              
    1146 bytes,    14 lines      md5sums              
 Package: librostlab-blast0-dev
 Source: librostlab-blast
 Version: 1.0.1-7
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1375
 Depends: librostlab-blast0v5 (= 1.0.1-7), librostlab-dev
 Suggests: librostlab-blast-doc
 Conflicts: librostlab-blast-dev
 Provides: librostlab-blast-dev
 Section: libdevel
 Priority: optional
 Homepage: http://rostlab.org/
 Description: very fast C++ library for parsing the output of NCBI BLAST programs (devel)
  This package provides a very fast library for parsing the default output of
  NCBI BLAST programs into a C++ structure.
  .
  libzerg is faster, but it provides only lexing (i.e. it only returns pairs
  of token identifiers and token string values).  librostlab-blast uses a
  parser generated with bison on top of a flex-generated lexer very similar to
  that of libzerg.
  .
  This package contains files necessary for developing applications with
  librostlab-blast.

drwxr-xr-x root/root         0 2016-07-11 22:47 ./
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/include/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/include/rostlab/
-rw-r--r-- root/root      4174 2016-07-11 22:46 ./usr/include/rostlab/blast-parser-driver.h
-rw-r--r-- root/root      5479 2016-07-11 22:46 ./usr/include/rostlab/blast-parser-location.h
-rw-r--r-- root/root     15355 2016-07-11 22:46 ./usr/include/rostlab/blast-parser-parser.h
-rw-r--r-- root/root      5088 2016-07-11 22:46 ./usr/include/rostlab/blast-parser-position.h
-rw-r--r-- root/root      3787 2016-07-11 22:46 ./usr/include/rostlab/blast-parser-stack.h
-rw-r--r-- root/root     10413 2016-07-11 22:46 ./usr/include/rostlab/blast-result.h
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/lib/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root   1338230 2016-07-11 22:46 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.a
lrwxrwxrwx root/root         0 2016-07-11 22:46 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.so -> librostlab-blast.so.0.0.0
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/doc/librostlab-blast0-dev/
-rw-r--r-- root/root       820 2016-07-05 11:59 ./usr/share/doc/librostlab-blast0-dev/README.test
-rw-r--r-- root/root      1031 2016-07-06 07:14 ./usr/share/doc/librostlab-blast0-dev/changelog.Debian.gz
-rw-r--r-- root/root       210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0-dev/changelog.gz
-rw-r--r-- root/root      2024 2015-08-13 08:12 ./usr/share/doc/librostlab-blast0-dev/copyright
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/doc/librostlab-blast0-dev/examples/
-rw-r--r-- root/root      1580 2012-11-24 16:20 ./usr/share/doc/librostlab-blast0-dev/examples/converged.ali.gz
-rw-r--r-- root/root       324 2012-11-24 16:20 ./usr/share/doc/librostlab-blast0-dev/examples/parseblast.cpp
-rw-r--r-- root/root       676 2016-06-27 08:56 ./usr/share/doc/librostlab-blast0-dev/installation-test


librostlab-blast0v5-dbg_1.0.1-7_armhf.deb
-----------------------------------------

 new debian package, version 2.0.
 size 298164 bytes: control archive=656 bytes.
     543 bytes,    15 lines      control              
     451 bytes,     5 lines      md5sums              
 Package: librostlab-blast0v5-dbg
 Source: librostlab-blast
 Version: 1.0.1-7
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 324
 Depends: librostlab-blast0v5 (= 1.0.1-7)
 Conflicts: librostlab-blast0-dbg
 Replaces: librostlab-blast0-dbg
 Section: debug
 Priority: extra
 Homepage: http://rostlab.org/
 Description: debugging symbols for librostlab-blast
  This package provides the detached debug symbols for librostlab-blast.
 Build-Ids: 85e00df28ee18f57beb8ef4b045a3ae7d63376e2

drwxr-xr-x root/root         0 2016-07-11 22:47 ./
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/lib/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/lib/debug/.build-id/85/
-rw-r--r-- root/root    313012 2016-07-11 22:46 ./usr/lib/debug/.build-id/85/e00df28ee18f57beb8ef4b045a3ae7d63376e2.debug
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/doc/librostlab-blast0v5-dbg/
-rw-r--r-- root/root      1031 2016-07-06 07:14 ./usr/share/doc/librostlab-blast0v5-dbg/changelog.Debian.gz
-rw-r--r-- root/root       210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0v5-dbg/changelog.gz
-rw-r--r-- root/root      2024 2015-08-13 08:12 ./usr/share/doc/librostlab-blast0v5-dbg/copyright
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/lintian/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       103 2015-08-13 07:54 ./usr/share/lintian/overrides/librostlab-blast0v5-dbg


librostlab-blast0v5_1.0.1-7_armhf.deb
-------------------------------------

 new debian package, version 2.0.
 size 74132 bytes: control archive=948 bytes.
     877 bytes,    22 lines      control              
     417 bytes,     5 lines      md5sums              
      39 bytes,     1 lines      shlibs               
      60 bytes,     2 lines      triggers             
 Package: librostlab-blast0v5
 Source: librostlab-blast
 Version: 1.0.1-7
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1265
 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
 Conflicts: librostlab-blast0
 Replaces: librostlab-blast0
 Section: libs
 Priority: optional
 Homepage: http://rostlab.org/
 Description: very fast C++ library for parsing the output of NCBI BLAST programs
  This package provides a very fast library for parsing the default output of
  NCBI BLAST programs into a C++ structure.
  .
  libzerg is faster, but it provides only lexing (i.e. it only returns pairs
  of token identifiers and token string values).  librostlab-blast uses a
  parser generated with bison on top of a flex-generated lexer very similar to
  that of libzerg.
  .
  This package contains the shared library.

drwxr-xr-x root/root         0 2016-07-11 22:46 ./
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/lib/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root         0 2016-07-11 22:46 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0 -> librostlab-blast.so.0.0.0
-rw-r--r-- root/root   1275336 2016-07-11 22:46 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/doc/librostlab-blast0v5/
-rw-r--r-- root/root      1031 2016-07-06 07:14 ./usr/share/doc/librostlab-blast0v5/changelog.Debian.gz
-rw-r--r-- root/root       210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0v5/changelog.gz
-rw-r--r-- root/root      2024 2015-08-13 08:12 ./usr/share/doc/librostlab-blast0v5/copyright
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/lintian/
drwxr-xr-x root/root         0 2016-07-11 22:46 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       499 2015-08-13 07:54 ./usr/share/lintian/overrides/librostlab-blast0v5


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 27636
Build-Time: 247
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 901
Job: librostlab-blast_1.0.1-7
Machine Architecture: armhf
Package: librostlab-blast
Package-Time: 1189
Source-Version: 1.0.1-7
Space: 27636
Status: successful
Version: 1.0.1-7
--------------------------------------------------------------------------------
Finished at 20160711-2247
Build needed 00:19:49, 27636k disc space