librostlab-blast →
1.0.1-5 →
armhf → 2015-09-07 14:47:25
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-03
╔══════════════════════════════════════════════════════════════════════════════╗
║ librostlab-blast 1.0.1-5 (armhf) 07 Sep 2015 14:24 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: librostlab-blast
Version: 1.0.1-5
Source Version: 1.0.1-5
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/librostlab-blast-pocAHt/librostlab-blast-1.0.1' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/librostlab-blast-pocAHt' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-e29fe151-55d0-44e1-b8ec-a1be8bc6c24b' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
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Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8306 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.2 MB]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
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NOTICE: 'librostlab-blast' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/rostlab/librostlab-blast/trunk/
Need to get 391 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main librostlab-blast 1.0.1-5 (dsc) [2430 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main librostlab-blast 1.0.1-5 (tar) [384 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main librostlab-blast 1.0.1-5 (diff) [4472 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-xkX8MX/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
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Get:1 file: ./ Release.gpg [299 B]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 7 not upgraded.
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(Reading database ... 12820 files and directories currently installed.)
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, d-shlibs, bison, doxygen, flex, graphviz, latex-xcolor, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, d-shlibs, bison, doxygen, flex, graphviz, latex-xcolor, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra
dpkg-deb: building package 'sbuild-build-depends-librostlab-blast-dummy' in '/«BUILDDIR»/resolver-vcu0pm/apt_archive/sbuild-build-depends-librostlab-blast-dummy.deb'.
OK
Ign file: ./ InRelease
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Ign file: ./ Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install librostlab-blast build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs
debhelper dh-autoreconf doxygen file flex fontconfig fontconfig-config
fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian
libasprintf0v5 libavahi-client3 libavahi-common-data libavahi-common3
libbison-dev libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-3.5 libcroco3
libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libedit2 libexpat1 libffi6
libfl-dev libfontconfig1 libfreetype6 libgd3 libglib2.0-0 libgnutls-deb0-28
libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgvc6 libgvpr2
libharfbuzz-icu0 libharfbuzz0b libhogweed4 libice6 libicu52 libidn11
libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1
libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libllvm3.5 libltdl7
libmagic1 libnettle6 libobjc-4.9-dev libobjc4 libopenjpeg5 libp11-kit0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpoppler46 libpotrace0
libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
librostlab3 librostlab3-dev libsigsegv2 libsm6 libsqlite3-0 libssl1.0.0
libsynctex1 libtasn1-6 libtexlua52 libtexluajit2 libthai-data libthai0
libtiff5 libtool libtrio2 libunistring0 libvpx2 libx11-6 libx11-data
libxapian22 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxdot4 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6
libzzip-0-13 m4 man-db mime-support po-debconf poppler-data
preview-latex-style python python-minimal python2.7 python2.7-minimal
tex-common texlive-base texlive-binaries texlive-fonts-recommended
texlive-latex-base texlive-latex-extra texlive-latex-recommended
texlive-pictures ucf x11-common xdg-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc bison-doc wamerican wordlist
whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc
gsfonts graphviz-doc groff cups-common libgd-tools gnutls-bin krb5-doc
krb5-user liblcms2-utils librostlab-doc libtool-doc automaken gfortran
fortran95-compiler gcj-jdk xapian-tools less www-browser libmail-box-perl
poppler-utils ghostscript fonts-japanese-mincho fonts-ipafont-mincho
fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai
fonts-arphic-uming fonts-nanum python-doc python-tk python2.7-doc
binfmt-support gv postscript-viewer xpdf-reader pdf-viewer perl-tk
libspreadsheet-parseexcel-perl python-pygments libfile-which-perl
texlive-pstricks dot2tex libtcltk-ruby gvfs-bin
Recommended packages:
curl wget lynx-cur libasprintf-dev libgettextpo-dev fonts-liberation
libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid krb5-locales
libltdl-dev xml-core libmail-sendmail-perl lmodern ruby wish
texlive-fonts-recommended-doc tipa tex-gyre texlive-latex-base-doc
texlive-latex-extra-doc texlive-latex-recommended-doc prosper prerex
texlive-pictures-doc libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs
debhelper dh-autoreconf doxygen file flex fontconfig fontconfig-config
fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian
libasprintf0v5 libavahi-client3 libavahi-common-data libavahi-common3
libbison-dev libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-3.5 libcroco3
libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libedit2 libexpat1 libffi6
libfl-dev libfontconfig1 libfreetype6 libgd3 libglib2.0-0 libgnutls-deb0-28
libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgvc6 libgvpr2
libharfbuzz-icu0 libharfbuzz0b libhogweed4 libice6 libicu52 libidn11
libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1
libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libllvm3.5 libltdl7
libmagic1 libnettle6 libobjc-4.9-dev libobjc4 libopenjpeg5 libp11-kit0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpoppler46 libpotrace0
libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
librostlab3 librostlab3-dev libsigsegv2 libsm6 libsqlite3-0 libssl1.0.0
libsynctex1 libtasn1-6 libtexlua52 libtexluajit2 libthai-data libthai0
libtiff5 libtool libtrio2 libunistring0 libvpx2 libx11-6 libx11-data
libxapian22 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxdot4 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6
libzzip-0-13 m4 man-db mime-support po-debconf poppler-data
preview-latex-style python python-minimal python2.7 python2.7-minimal
sbuild-build-depends-librostlab-blast-dummy tex-common texlive-base
texlive-binaries texlive-fonts-recommended texlive-latex-base
texlive-latex-extra texlive-latex-recommended texlive-pictures ucf
x11-common xdg-utils
0 upgraded, 145 newly installed, 0 to remove and 7 not upgraded.
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Get:18 http://172.17.0.1/private/ stretch-staging/main libsqlite3-0 armhf 3.8.11.1-1 [391 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2d-1 [882 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libpython2.7-stdlib armhf 2.7.10-3 [1815 kB]
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Get:24 http://172.17.0.1/private/ stretch-staging/main libsigsegv2 armhf 2.10-4 [28.2 kB]
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Get:29 http://172.17.0.1/private/ stretch-staging/main ucf all 3.0030 [69.7 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main fonts-dejavu-core all 2.35-1 [1064 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main fontconfig-config all 2.11.0-6.3 [273 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libfontconfig1 armhf 2.11.0-6.3 [311 kB]
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Get:34 http://172.17.0.1/private/ stretch-staging/main libavahi-common-data armhf 0.6.31-5 [98.8 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main libavahi-common3 armhf 0.6.31-5 [48.0 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main libavahi-client3 armhf 0.6.31-5 [50.6 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.1-1.1 [2312 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main libgraphite2-3 armhf 1.2.4-3 [48.2 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main x11-common all 1:7.7+9 [287 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main libice6 armhf 2:1.0.9-1 [51.2 kB]
Get:42 http://172.17.0.1/private/ stretch-staging/main libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main liblcms2-2 armhf 2.6-3 [113 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libltdl7 armhf 2.4.2-1.11 [42.5 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libobjc4 armhf 5.2.1-16+rpi1 [90.4 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main libthai-data all 0.1.22-2 [161 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libdatrie1 armhf 0.2.9-2 [31.5 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main libthai0 armhf 0.1.22-2 [44.8 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main libpango-1.0-0 armhf 1.36.8-3 [274 kB]
Get:50 http://172.17.0.1/private/ stretch-staging/main libpixman-1-0 armhf 0.32.6-3 [422 kB]
Get:51 http://172.17.0.1/private/ stretch-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
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Get:73 http://172.17.0.1/private/ stretch-staging/main libtrio2 armhf 1.16+dfsg1-3 [39.0 kB]
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Get:101 http://172.17.0.1/private/ stretch-staging/main libclang1-3.5 armhf 1:3.5.2-1 [2959 kB]
Get:102 http://172.17.0.1/private/ stretch-staging/main doxygen armhf 1.8.9.1-3 [2561 kB]
Get:103 http://172.17.0.1/private/ stretch-staging/main libcdt5 armhf 2.38.0-10 [60.3 kB]
Get:104 http://172.17.0.1/private/ stretch-staging/main libcgraph6 armhf 2.38.0-10 [78.6 kB]
Get:105 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo armhf 1:1.4.1-2 [103 kB]
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Get:107 http://172.17.0.1/private/ stretch-staging/main libvpx2 armhf 1.4.0-4+rpi1 [409 kB]
Get:108 http://172.17.0.1/private/ stretch-staging/main libgd3 armhf 2.1.1-1+b1 [127 kB]
Get:109 http://172.17.0.1/private/ stretch-staging/main libpathplan4 armhf 2.38.0-10 [63.4 kB]
Get:110 http://172.17.0.1/private/ stretch-staging/main libxdot4 armhf 2.38.0-10 [57.6 kB]
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Get:113 http://172.17.0.1/private/ stretch-staging/main libxaw7 armhf 2:1.0.13-1 [164 kB]
Get:114 http://172.17.0.1/private/ stretch-staging/main graphviz armhf 2.38.0-10 [650 kB]
Get:115 http://172.17.0.1/private/ stretch-staging/main libcups2 armhf 2.0.3-10 [264 kB]
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Get:118 http://172.17.0.1/private/ stretch-staging/main libijs-0.35 armhf 0.35-11 [16.1 kB]
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Get:120 http://172.17.0.1/private/ stretch-staging/main libgs9-common all 9.16~dfsg-2 [2983 kB]
Get:121 http://172.17.0.1/private/ stretch-staging/main libgs9 armhf 9.16~dfsg-2 [1699 kB]
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Get:123 http://172.17.0.1/private/ stretch-staging/main libharfbuzz-icu0 armhf 1.0.1-1 [389 kB]
Get:124 http://172.17.0.1/private/ stretch-staging/main libkpathsea6 armhf 2015.20150524.37493-5 [148 kB]
Get:125 http://172.17.0.1/private/ stretch-staging/main libpaper-utils armhf 1.1.24+nmu4 [17.2 kB]
Get:126 http://172.17.0.1/private/ stretch-staging/main libopenjpeg5 armhf 1:1.5.2-3.1 [93.6 kB]
Get:127 http://172.17.0.1/private/ stretch-staging/main libpoppler46 armhf 0.26.5-3 [1093 kB]
Get:128 http://172.17.0.1/private/ stretch-staging/main libpotrace0 armhf 1.12-1 [22.9 kB]
Get:129 http://172.17.0.1/private/ stretch-staging/main libptexenc1 armhf 2015.20150524.37493-5 [53.3 kB]
Get:130 http://172.17.0.1/private/ stretch-staging/main librostlab3 armhf 1.0.20-4 [5958 B]
Get:131 http://172.17.0.1/private/ stretch-staging/main librostlab3-dev armhf 1.0.20-4 [12.7 kB]
Get:132 http://172.17.0.1/private/ stretch-staging/main libsynctex1 armhf 2015.20150524.37493-5 [55.9 kB]
Get:133 http://172.17.0.1/private/ stretch-staging/main libtexlua52 armhf 2015.20150524.37493-5 [84.1 kB]
Get:134 http://172.17.0.1/private/ stretch-staging/main libtexluajit2 armhf 2015.20150524.37493-5 [184 kB]
Get:135 http://172.17.0.1/private/ stretch-staging/main tex-common all 6.02 [609 kB]
Get:136 http://172.17.0.1/private/ stretch-staging/main preview-latex-style all 11.87-3+deb8u1 [318 kB]
Get:137 http://172.17.0.1/private/ stretch-staging/main xdg-utils all 1.1.0~rc1+git20111210-7.4 [65.0 kB]
Get:138 http://172.17.0.1/private/ stretch-staging/main texlive-binaries armhf 2015.20150524.37493-5 [6837 kB]
Get:139 http://172.17.0.1/private/ stretch-staging/main texlive-base all 2015.20150823-1 [17.9 MB]
Get:140 http://172.17.0.1/private/ stretch-staging/main texlive-fonts-recommended all 2015.20150823-1 [5684 kB]
Get:141 http://172.17.0.1/private/ stretch-staging/main texlive-latex-base all 2015.20150823-1 [985 kB]
Get:142 http://172.17.0.1/private/ stretch-staging/main texlive-latex-recommended all 2015.20150823-1 [8363 kB]
Get:143 http://172.17.0.1/private/ stretch-staging/main texlive-pictures all 2015.20150823-1 [3145 kB]
Get:144 http://172.17.0.1/private/ stretch-staging/main texlive-latex-extra all 2015.20150823-1 [9731 kB]
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update-language: texlive-base not installed and configured, doing nothing!
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update-fmtutil has updated the following file(s):
/var/lib/texmf/fmtutil.cnf-DEBIAN
/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST
If you want to activate the changes in the above file(s),
you should run fmtutil-sys or fmtutil.
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-1 dpkg-dev_1.18.2 g++-4.9_4.9.3-4 g++-5_5.2.1-16+rpi1 gcc-4.9_4.9.3-4 gcc-5_5.2.1-16+rpi1 libc6-dev_2.19-19 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-16+rpi1 libstdc++6_5.2.1-16+rpi1 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.10 autoconf_2.69-9 automake_1:1.15-3 autopoint_0.19.5.1-1 autotools-dev_20140911.1 base-files_9.2+rpi1 base-passwd_3.5.38 bash_4.3-13 binutils_2.25.1-1 bison_2:3.0.2.dfsg-2 bsdmainutils_9.0.6 bsdutils_1:2.26.2-9 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi1 cpp-4.9_4.9.3-4 cpp-5_5.2.1-16+rpi1 d-shlibs_0.62 dash_0.5.7-4 debconf_1.5.57 debfoster_2.7-2 debhelper_9.20150811 debianutils_4.5.1 dh-autoreconf_10 diffutils_1:3.3-1 dmsetup_2:1.02.104-1 doxygen_1.8.9.1-3 dpkg_1.18.2 dpkg-dev_1.18.2 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9 flex_2.5.39-8 fontconfig_2.11.0-6.3 fontconfig-config_2.11.0-6.3 fonts-dejavu-core_2.35-1 g++_4:5.2.1-4+rpi1 g++-4.9_4.9.3-4 g++-5_5.2.1-16+rpi1 gcc_4:5.2.1-4+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-4 gcc-4.9_4.9.3-4 gcc-4.9-base_4.9.3-4 gcc-5_5.2.1-16+rpi1 gcc-5-base_5.2.1-16+rpi1 gettext_0.19.5.1-1 gettext-base_0.19.5.1-1 gnupg_1.4.19-5 gpgv_1.4.19-5 graphviz_2.38.0-10 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 init_1.23 init-system-helpers_1.23 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.2 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.9.2-3 libapt-pkg4.12_1.0.9.10 libasan1_4.9.3-4 libasan2_5.2.1-16+rpi1 libasprintf0v5_0.19.5.1-1 libatomic1_5.2.1-16+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-1 libaudit1_1:2.4.4-1 libavahi-client3_0.6.31-5 libavahi-common-data_0.6.31-5 libavahi-common3_0.6.31-5 libbison-dev_2:3.0.2.dfsg-2 libblkid1_2.26.2-9 libbsd0_0.7.0-2 libbz2-1.0_1.0.6-8 libc-bin_2.19-19 libc-dev-bin_2.19-19 libc6_2.19-19 libc6-dev_2.19-19 libcairo2_1.14.2-2 libcap2_1:2.24-11 libcap2-bin_1:2.24-11 libcc1-0_5.2.1-16+rpi1 libcdt5_2.38.0-10 libcgraph6_2.38.0-10 libclang1-3.5_1:3.5.2-1 libcloog-isl4_0.18.3-1 libcomerr2_1.42.13-1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libcups2_2.0.3-10 libcupsfilters1_1.0.71-1 libcupsimage2_2.0.3-10 libdatrie1_0.2.9-2 libdb5.3_5.3.28-9 libdbus-1-3_1.8.20-1 libdebconfclient0_0.195 libdevmapper1.02.1_2:1.02.104-1 libdpkg-perl_1.18.2 libdrm2_2.4.64-1 libedit2_3.1-20150325-1 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.26.2-9 libffi6_3.2.1-3 libfl-dev_2.5.39-8 libfontconfig1_2.11.0-6.3 libfreetype6_2.5.2-4 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.3-4 libgcc-5-dev_5.2.1-16+rpi1 libgcc1_1:5.2.1-16+rpi1 libgcrypt20_1.6.3-2 libgd3_2.1.1-1+b1 libgdbm3_1.8.3-13.1 libglib2.0-0_2.44.1-1.1 libgmp10_2:6.0.0+dfsg-7+rpi1 libgnutls-deb0-28_3.3.17-1 libgomp1_5.2.1-16+rpi1 libgpg-error0_1.19-2 libgraphite2-3_1.2.4-3 libgs9_9.16~dfsg-2 libgs9-common_9.16~dfsg-2 libgssapi-krb5-2_1.13.2+dfsg-2 libgvc6_2.38.0-10 libgvpr2_2.38.0-10 libharfbuzz-icu0_1.0.1-1 libharfbuzz0b_1.0.1-1 libhogweed4_3.1.1-4 libice6_2:1.0.9-1 libicu52_52.1-10 libidn11_1.32-1 libijs-0.35_0.35-11 libisl13_0.14-2 libjbig0_2.1-3.1 libjbig2dec0_0.12-2 libjpeg62-turbo_1:1.4.1-2 libk5crypto3_1.13.2+dfsg-2 libkeyutils1_1.5.9-5 libklibc_2.0.4-2+rpi1 libkmod2_21-1 libkpathsea6_2015.20150524.37493-5 libkrb5-3_1.13.2+dfsg-2 libkrb5support0_1.13.2+dfsg-2 liblcms2-2_2.6-3 libllvm3.5_1:3.5.2-1 liblocale-gettext-perl_1.05-9 libltdl7_2.4.2-1.11 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.22+15-2 libmount1_2.26.2-9 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_6.0+20150810-1 libncursesw5_6.0+20150810-1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libobjc-4.9-dev_4.9.3-4 libobjc4_5.2.1-16+rpi1 libopenjpeg5_1:1.5.2-3.1 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpango-1.0-0_1.36.8-3 libpangocairo-1.0-0_1.36.8-3 libpangoft2-1.0-0_1.36.8-3 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpathplan4_2.38.0-10 libpcre3_2:8.35-7 libpipeline1_1.4.1-1 libpixman-1-0_0.32.6-3 libpng12-0_1.2.50-2 libpoppler46_0.26.5-3 libpotrace0_1.12-1 libprocps3_2:3.3.9-9 libprocps4_2:3.3.10-2 libptexenc1_2015.20150524.37493-5 libpython-stdlib_2.7.9-1 libpython2.7-minimal_2.7.10-3 libpython2.7-stdlib_2.7.10-3 libreadline6_6.3-8 librostlab3_1.0.20-4 librostlab3-dev_1.0.20-4 libseccomp2_2.2.3-1 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-2 libsm6_2:1.2.2-1 libsmartcols1_2.26.2-9 libsqlite3-0_3.8.11.1-1 libss2_1.42.13-1 libssl1.0.0_1.0.2d-1 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-16+rpi1 libstdc++6_5.2.1-16+rpi1 libsynctex1_2015.20150524.37493-5 libsystemd0_225-1 libtasn1-6_4.5-2 libtexlua52_2015.20150524.37493-5 libtexluajit2_2015.20150524.37493-5 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.22-2 libthai0_0.1.22-2 libtiff5_4.0.5-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20150810-1 libtool_2.4.2-1.11 libtrio2_1.16+dfsg1-3 libubsan0_5.2.1-16+rpi1 libudev1_225-1 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-9 libvpx2_1.4.0-4+rpi1 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxapian22_1.2.21-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-render0_1.10-3 libxcb-shm0_1.10-3 libxcb1_1.10-3 libxdmcp6_1:1.1.2-1 libxdot4_2.38.0-10 libxext6_2:1.3.3-1 libxi6_2:1.7.4-1 libxml2_2.9.1+dfsg1-5 libxmu6_2:1.1.2-1 libxpm4_1:3.5.11-1 libxrender1_1:0.9.8-1 libxt6_1:1.1.4-1 libzzip-0-13_0.13.62-3 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 m4_1.4.17-4 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.2-1 mawk_1.3.3-17 mime-support_3.59 mount_2.26.2-9 mountall_2.54 multiarch-support_2.19-19 ncurses-base_6.0+20150810-1 ncurses-bin_6.0+20150810-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 plymouth_0.9.0-9 po-debconf_1.0.18 poppler-data_0.4.7-3 preview-latex-style_11.87-3+deb8u1 procps_2:3.3.10-2 python_2.7.9-1 python-minimal_2.7.9-1 python2.7_2.7.10-3 python2.7-minimal_2.7.10-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librostlab-blast-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_225-1 systemd-sysv_225-1 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-1 tex-common_6.02 texlive-base_2015.20150823-1 texlive-binaries_2015.20150524.37493-5 texlive-fonts-recommended_2015.20150823-1 texlive-latex-base_2015.20150823-1 texlive-latex-extra_2015.20150823-1 texlive-latex-recommended_2015.20150823-1 texlive-pictures_2015.20150823-1 tzdata_2015f-1 ucf_3.0030 udev_225-1 util-linux_2.26.2-9 x11-common_1:7.7+9 xdg-utils_1.1.0~rc1+git20111210-7.4 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat Aug 15 14:13:03 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./librostlab-blast_1.0.1-5.dsc
dpkg-source: info: extracting librostlab-blast in librostlab-blast-1.0.1
dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz
dpkg-source: info: unpacking librostlab-blast_1.0.1-5.debian.tar.xz
dpkg-source: info: applying reproducible.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-e29fe151-55d0-44e1-b8ec-a1be8bc6c24b
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package librostlab-blast
dpkg-buildpackage: source version 1.0.1-5
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build librostlab-blast-1.0.1
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel --with autoreconf
dh_testdir -O--parallel
debian/rules override_dh_auto_clean
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_auto_clean --parallel
rm -f lib/librostlab-blast.tag
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_autoreconf_clean -O--parallel
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --parallel --with autoreconf
dh_testdir -a -O--parallel
dh_autoreconf -a -O--parallel
libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
libtoolize: copying file `m4/libtool.m4'
libtoolize: copying file `m4/ltoptions.m4'
libtoolize: copying file `m4/ltsugar.m4'
libtoolize: copying file `m4/ltversion.m4'
libtoolize: copying file `m4/lt~obsolete.m4'
configure.ac:7: installing './compile'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_auto_configure --parallel -- --enable-doxygen-dot --enable-doxygen-pdf
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for bison... bison -y
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... -lfl
checking whether yytext is a pointer... yes
checking rostlab/aux_functions.h usability... yes
checking rostlab/aux_functions.h presence... yes
checking for rostlab/aux_functions.h... yes
checking rostlab/rostlab_stdexcept.h usability... yes
checking rostlab/rostlab_stdexcept.h presence... yes
checking for rostlab/rostlab_stdexcept.h... yes
checking for doxygen... /usr/bin/doxygen
checking for perl... /usr/bin/perl
checking for dot... /usr/bin/dot
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for egrep... /bin/egrep
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating lib/Makefile
config.status: creating lib/Doxyfile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/«PKGBUILDDIR»'
debian/rules override_dh_auto_build
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_auto_build --parallel
make -j4
make[2]: Entering directory '/«PKGBUILDDIR»'
make all-recursive
make[3]: Entering directory '/«PKGBUILDDIR»'
Making all in lib
make[4]: Entering directory '/«PKGBUILDDIR»/lib'
mkdir -p rostlab
/bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex
/bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y
/«PKGBUILDDIR»/lib/blast-parser-parser.ypp:22.9-17: warning: deprecated directive, use '%define api.namespace rostlab::blast' [-Wdeprecated]
%define namespace "rostlab::blast"
^^^^^^^^^
/«PKGBUILDDIR»/lib/blast-parser-parser.ypp:22.9-17: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated]
%define namespace "rostlab::blast"
^^^^^^^^^
updating rostlab/blast-parser-location.h
updating rostlab/blast-parser-position.h
updating rostlab/blast-parser-stack.h
updating rostlab/blast-parser-parser.h
sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp
sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h
sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h
make all-am
make[5]: Entering directory '/«PKGBUILDDIR»/lib'
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp
\
\
/bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f 'librostlab_blast_la-blast-parser-scanner.cpp' || echo './'`librostlab_blast_la-blast-parser-scanner.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-driver.cpp -o librostlab_blast_la-blast-parser-driver.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-parser.cpp -o librostlab_blast_la-blast-parser-parser.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o >/dev/null 2>&1
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libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/5/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/5/crtbeginS.o .libs/librostlab_blast_la-blast-parser-driver.o .libs/librostlab_blast_la-blast-parser-parser.o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o -L/usr/lib/gcc/arm-linux-gnueabihf/5 -L/usr/lib/gcc/arm-linux-gnueabihf/5/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/5/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/5/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/5/../../../arm-linux-gnueabihf/crtn.o -O2 -Wl,-z -Wl,relro -Wl,-soname -Wl,librostlab-blast.so.0 -o .libs/librostlab-blast.so.0.0.0
libtool: link: (cd ".libs" && rm -f "librostlab-blast.so.0" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so.0")
libtool: link: (cd ".libs" && rm -f "librostlab-blast.so" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so")
libtool: link: ar cru .libs/librostlab-blast.a librostlab_blast_la-blast-parser-driver.o librostlab_blast_la-blast-parser-parser.o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/librostlab-blast.a
libtool: link: ( cd ".libs" && rm -f "librostlab-blast.la" && ln -s "../librostlab-blast.la" "librostlab-blast.la" )
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Chapter 2.
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Chapter 3.
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Chapter 4.
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Chapter 5.
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Chapter 6.
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cm/cmsy9.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb></usr/share/
texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8ac.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/helvetic/uhvbo8a.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/urw/helvetic/uhvbo8ac.pfb></usr/share/texlive/texmf-dist/fonts/type1/u
rw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/
uhvro8a.pfb>
Output written on refman.pdf (74 pages, 406177 bytes).
Transcript written on refman.log.
make[2]: Leaving directory '/«PKGBUILDDIR»/lib'
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_auto_test -a -O--parallel
make -j4 check
make[1]: Entering directory '/«PKGBUILDDIR»'
Making check in lib
make[2]: Entering directory '/«PKGBUILDDIR»/lib'
make check-am
make[3]: Entering directory '/«PKGBUILDDIR»/lib'
make[3]: Nothing to be done for 'check-am'.
make[3]: Leaving directory '/«PKGBUILDDIR»/lib'
make[2]: Leaving directory '/«PKGBUILDDIR»/lib'
make[2]: Entering directory '/«PKGBUILDDIR»'
make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
fakeroot debian/rules binary-arch
dh binary-arch --parallel --with autoreconf
dh_testroot -a -O--parallel
dh_prep -a -O--parallel
dh_auto_install -a -O--parallel
make -j4 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/«PKGBUILDDIR»'
Making install in lib
make[2]: Entering directory '/«PKGBUILDDIR»/lib'
make install-am
make[3]: Entering directory '/«PKGBUILDDIR»/lib'
make[4]: Entering directory '/«PKGBUILDDIR»/lib'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/rostlab'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/rostlab'
/bin/bash ../libtool --mode=install /usr/bin/install -c librostlab-blast.la '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
/usr/bin/install -c -m 644 rostlab/blast-parser-location.h rostlab/blast-parser-parser.h rostlab/blast-parser-position.h rostlab/blast-parser-stack.h '/«PKGBUILDDIR»/debian/tmp/usr/include/rostlab'
/usr/bin/install -c -m 644 rostlab/blast-parser-driver.h rostlab/blast-result.h '/«PKGBUILDDIR»/debian/tmp/usr/include/rostlab'
libtool: install: /usr/bin/install -c .libs/librostlab-blast.so.0.0.0 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so.0 || { rm -f librostlab-blast.so.0 && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so.0; }; })
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so || { rm -f librostlab-blast.so && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so; }; })
libtool: install: /usr/bin/install -c .libs/librostlab-blast.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.la
libtool: install: /usr/bin/install -c .libs/librostlab-blast.a /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a
libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a
libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a
libtool: install: warning: remember to run `libtool --finish /usr/lib/arm-linux-gnueabihf'
make[4]: Leaving directory '/«PKGBUILDDIR»/lib'
make[3]: Leaving directory '/«PKGBUILDDIR»/lib'
make[2]: Leaving directory '/«PKGBUILDDIR»/lib'
make[2]: Entering directory '/«PKGBUILDDIR»'
make[3]: Entering directory '/«PKGBUILDDIR»'
make[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/share/doc/librostlab-blast/examples'
/usr/bin/install -c -m 644 examples/converged.ali examples/parseblast.cpp '/«PKGBUILDDIR»/debian/tmp/usr/share/doc/librostlab-blast/examples'
make[3]: Leaving directory '/«PKGBUILDDIR»'
make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
debian/rules override_dh_install
make[1]: Entering directory '/«PKGBUILDDIR»'
d-shlibmove --commit \
--multiarch \
--exclude-la \
--v5 \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabihf
mv /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf
mv /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf
PKGDEV=librostlab-blast0-dev
PKGSHL=librostlab-blast0v5
install -d -m 755 debian/librostlab-blast0-dev/usr/include
mv debian/tmp/usr/include/rostlab debian/librostlab-blast0-dev/usr/include
make[1]: Leaving directory '/«PKGBUILDDIR»'
debian/rules override_dh_installdocs
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_installdocs
find debian -name "*.md5" -delete
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_installchangelogs -a -O--parallel
dh_installexamples -a -O--parallel
dh_lintian -a -O--parallel
dh_perl -a -O--parallel
debian/rules override_dh_link
make[1]: Entering directory '/«PKGBUILDDIR»'
find debian -name jquery.js -delete
dh_link
make[1]: Leaving directory '/«PKGBUILDDIR»'
debian/rules override_dh_compress
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_compress -Xlibrostlab-blast.tag
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_fixperms -a -O--parallel
debian/rules override_dh_strip
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_strip --dbg-package=librostlab-blast0v5-dbg
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0 found in none of the libraries
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package 'librostlab-blast0-dev' in '../librostlab-blast0-dev_1.0.1-5_armhf.deb'.
dpkg-deb: building package 'librostlab-blast0v5' in '../librostlab-blast0v5_1.0.1-5_armhf.deb'.
dpkg-deb: building package 'librostlab-blast0v5-dbg' in '../librostlab-blast0v5-dbg_1.0.1-5_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../librostlab-blast_1.0.1-5_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build librostlab-blast-1.0.1
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150907-1444
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
librostlab-blast_1.0.1-5_armhf.changes:
───────────────────────────────────────
Format: 1.8
Date: Sat, 15 Aug 2015 16:10:54 +0200
Source: librostlab-blast
Binary: librostlab-blast0v5 librostlab-blast0-dev librostlab-blast-doc librostlab-blast0v5-dbg
Architecture: armhf
Version: 1.0.1-5
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
librostlab-blast-doc - very fast C++ library for parsing the output of NCBI BLAST progra
librostlab-blast0-dev - very fast C++ library for parsing the output of NCBI BLAST progra
librostlab-blast0v5 - very fast C++ library for parsing the output of NCBI BLAST progra
librostlab-blast0v5-dbg - debugging symbols for librostlab-blast
Closes: 795485
Changes:
librostlab-blast (1.0.1-5) unstable; urgency=medium
.
* Make build reproducible (Thanks for the patch to Chris Lamb
<lamby@debian.org>)
Closes: #795485
Checksums-Sha1:
f4013b1022d954c76b73a79982c38a108ec660fd 86792 librostlab-blast0-dev_1.0.1-5_armhf.deb
d153167bea55b710ab4ef3367e1c2f5140afdb6a 303656 librostlab-blast0v5-dbg_1.0.1-5_armhf.deb
7d6789028baec60f15941d531970da54dde079c1 73628 librostlab-blast0v5_1.0.1-5_armhf.deb
Checksums-Sha256:
e98cbb40f52125e1e09c6e482c1d64ed9fe54dd7924236fd817cab33519efa9b 86792 librostlab-blast0-dev_1.0.1-5_armhf.deb
ab7165df567ced0ac26291c763c843f3b6af8c2e03e75aaec5d3130a1609e2e9 303656 librostlab-blast0v5-dbg_1.0.1-5_armhf.deb
4a43f133cceb65762c4bc955b79f8fdc8dda80321714c0473631f36013d12e03 73628 librostlab-blast0v5_1.0.1-5_armhf.deb
Files:
81c7925f8afa673b1f80adbdd233e14c 86792 libdevel optional librostlab-blast0-dev_1.0.1-5_armhf.deb
7f193d0e800200c4ddb546cb055a65fe 303656 debug extra librostlab-blast0v5-dbg_1.0.1-5_armhf.deb
02251fda3b96fcf9797b42d14da1fd4b 73628 libs optional librostlab-blast0v5_1.0.1-5_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
librostlab-blast0-dev_1.0.1-5_armhf.deb
───────────────────────────────────────
new debian package, version 2.0.
size 86792 bytes: control archive=1083 bytes.
952 bytes, 24 lines control
976 bytes, 12 lines md5sums
Package: librostlab-blast0-dev
Source: librostlab-blast
Version: 1.0.1-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1368
Depends: librostlab-blast0v5 (= 1.0.1-5)
Suggests: librostlab-blast-doc
Conflicts: librostlab-blast-dev
Provides: librostlab-blast-dev
Section: libdevel
Priority: optional
Homepage: http://rostlab.org/
Description: very fast C++ library for parsing the output of NCBI BLAST programs (devel)
This package provides a very fast library for parsing the default output of
NCBI BLAST programs into a C++ structure.
.
libzerg is faster, but it provides only lexing (i.e. it only returns pairs
of token identifiers and token string values). librostlab-blast uses a
parser generated with bison on top of a flex-generated lexer very similar to
that of libzerg.
.
This package contains files necessary for developing applications with
librostlab-blast.
drwxr-xr-x root/root 0 2015-09-07 14:44 ./
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/include/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/include/rostlab/
-rw-r--r-- root/root 4174 2015-09-07 14:44 ./usr/include/rostlab/blast-parser-driver.h
-rw-r--r-- root/root 5316 2015-09-07 14:44 ./usr/include/rostlab/blast-parser-location.h
-rw-r--r-- root/root 14836 2015-09-07 14:44 ./usr/include/rostlab/blast-parser-parser.h
-rw-r--r-- root/root 5076 2015-09-07 14:44 ./usr/include/rostlab/blast-parser-position.h
-rw-r--r-- root/root 3771 2015-09-07 14:44 ./usr/include/rostlab/blast-parser-stack.h
-rw-r--r-- root/root 10413 2015-09-07 14:44 ./usr/include/rostlab/blast-result.h
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/lib/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 1334058 2015-09-07 14:44 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.a
lrwxrwxrwx root/root 0 2015-09-07 14:44 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.so -> librostlab-blast.so.0.0.0
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/doc/librostlab-blast0-dev/
-rw-r--r-- root/root 783 2015-08-15 14:10 ./usr/share/doc/librostlab-blast0-dev/changelog.Debian.gz
-rw-r--r-- root/root 210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0-dev/changelog.gz
-rw-r--r-- root/root 2024 2015-08-13 08:12 ./usr/share/doc/librostlab-blast0-dev/copyright
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/doc/librostlab-blast0-dev/examples/
-rw-r--r-- root/root 1580 2012-11-24 16:20 ./usr/share/doc/librostlab-blast0-dev/examples/converged.ali.gz
-rw-r--r-- root/root 324 2012-11-24 16:20 ./usr/share/doc/librostlab-blast0-dev/examples/parseblast.cpp
librostlab-blast0v5-dbg_1.0.1-5_armhf.deb
─────────────────────────────────────────
new debian package, version 2.0.
size 303656 bytes: control archive=636 bytes.
491 bytes, 14 lines control
451 bytes, 5 lines md5sums
Package: librostlab-blast0v5-dbg
Source: librostlab-blast
Version: 1.0.1-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 328
Depends: librostlab-blast0v5 (= 1.0.1-5)
Conflicts: librostlab-blast0-dbg
Replaces: librostlab-blast0-dbg
Section: debug
Priority: extra
Homepage: http://rostlab.org/
Description: debugging symbols for librostlab-blast
This package provides the detached debug symbols for librostlab-blast.
drwxr-xr-x root/root 0 2015-09-07 14:44 ./
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/lib/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/lib/debug/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/lib/debug/.build-id/e7/
-rw-r--r-- root/root 318432 2015-09-07 14:44 ./usr/lib/debug/.build-id/e7/46efd37a36e23f02a5d91c57f7cf5e482ad699.debug
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/doc/librostlab-blast0v5-dbg/
-rw-r--r-- root/root 783 2015-08-15 14:10 ./usr/share/doc/librostlab-blast0v5-dbg/changelog.Debian.gz
-rw-r--r-- root/root 210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0v5-dbg/changelog.gz
-rw-r--r-- root/root 2024 2015-08-13 08:12 ./usr/share/doc/librostlab-blast0v5-dbg/copyright
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/lintian/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 103 2015-08-13 07:54 ./usr/share/lintian/overrides/librostlab-blast0v5-dbg
librostlab-blast0v5_1.0.1-5_armhf.deb
─────────────────────────────────────
new debian package, version 2.0.
size 73628 bytes: control archive=1027 bytes.
879 bytes, 22 lines control
417 bytes, 5 lines md5sums
135 bytes, 7 lines * postinst #!/bin/sh
132 bytes, 7 lines * postrm #!/bin/sh
39 bytes, 1 lines shlibs
Package: librostlab-blast0v5
Source: librostlab-blast
Version: 1.0.1-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1266
Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 5.2)
Conflicts: librostlab-blast0
Replaces: librostlab-blast0
Section: libs
Priority: optional
Homepage: http://rostlab.org/
Description: very fast C++ library for parsing the output of NCBI BLAST programs
This package provides a very fast library for parsing the default output of
NCBI BLAST programs into a C++ structure.
.
libzerg is faster, but it provides only lexing (i.e. it only returns pairs
of token identifiers and token string values). librostlab-blast uses a
parser generated with bison on top of a flex-generated lexer very similar to
that of libzerg.
.
This package contains the shared library.
drwxr-xr-x root/root 0 2015-09-07 14:44 ./
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/lib/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2015-09-07 14:44 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0 -> librostlab-blast.so.0.0.0
-rw-r--r-- root/root 1275960 2015-09-07 14:44 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/doc/librostlab-blast0v5/
-rw-r--r-- root/root 783 2015-08-15 14:10 ./usr/share/doc/librostlab-blast0v5/changelog.Debian.gz
-rw-r--r-- root/root 210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0v5/changelog.gz
-rw-r--r-- root/root 2024 2015-08-13 08:12 ./usr/share/doc/librostlab-blast0v5/copyright
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/lintian/
drwxr-xr-x root/root 0 2015-09-07 14:44 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 499 2015-08-13 07:54 ./usr/share/lintian/overrides/librostlab-blast0v5
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 27672
Build-Time: 238
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 931
Job: librostlab-blast_1.0.1-5
Machine Architecture: armhf
Package: librostlab-blast
Package-Time: 1226
Source-Version: 1.0.1-5
Space: 27672
Status: successful
Version: 1.0.1-5
────────────────────────────────────────────────────────────────────────────────
Finished at 20150907-1444
Build needed 00:20:26, 27672k disc space