librostlab-blast →
1.0.1-13 →
armhf → 2022-10-01 23:00:21
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| librostlab-blast 1.0.1-13 (armhf) Sat, 01 Oct 2022 22:41:35 +0000 |
+==============================================================================+
Package: librostlab-blast
Version: 1.0.1-13
Source Version: 1.0.1-13
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-7c0f3a72-2762-40c3-94c8-fdd6e88bca0d' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/librostlab-blast-W84mMG/resolver-OiqOvy' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.3 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.2 MB]
Fetched 27.5 MB in 17s (1660 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'librostlab-blast' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/librostlab-blast.git
Please use:
git clone https://salsa.debian.org/med-team/librostlab-blast.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 393 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main librostlab-blast 1.0.1-13 (dsc) [2522 B]
Get:2 http://172.17.4.1/private bookworm-staging/main librostlab-blast 1.0.1-13 (tar) [384 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main librostlab-blast 1.0.1-13 (diff) [6540 B]
Fetched 393 kB in 0s (2819 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/librostlab-blast-W84mMG/librostlab-blast-1.0.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/librostlab-blast-W84mMG' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [438 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [523 B]
Fetched 1918 B in 0s (50.2 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bison bsdextrautils d-shlibs
debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file flex
fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext
gettext-base graphviz groff-base intltool-debian libapache-pom-java
libarchive-zip-perl libbrotli1 libbsd0 libcairo2 libcdt5 libcgraph6
libclang-cpp14 libclang1-14 libcommons-logging-java libcommons-parent-java
libdatrie1 libdebhelper-perl libdeflate0 libedit2 libelf1 libexpat1
libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6
libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2
libharfbuzz0b libice6 libicu71 libjbig0 libjpeg62-turbo libkpathsea6
liblab-gamut1 liblerc4 libllvm14 libltdl7 libmagic-mgc libmagic1 libmd0
libmpdec3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpathplan4 libpdfbox-java libpipeline1
libpixman-1-0 libpng16-16 libptexenc1 libpython3-stdlib
libpython3.10-minimal libpython3.10-stdlib librostlab3 librostlab3-dev
libsm6 libsub-override-perl libsynctex2 libteckit0 libtexlua53-5
libtexluajit2 libthai-data libthai0 libtiff5 libtool libuchardet0 libwebp7
libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6
libz3-4 libzzip-0-13 m4 man-db media-types po-debconf preview-latex-style
python3 python3-minimal python3.10 python3.10-minimal t1utils tex-common
texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base
texlive-latex-extra texlive-latex-recommended texlive-pictures ucf
x11-common xdg-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc bison-doc dh-make doxygen-latex
doxygen-doc doxygen-gui flex-doc gettext-doc libasprintf-dev
libgettextpo-dev gsfonts graphviz-doc groff libavalon-framework-java
libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java
libgd-tools librostlab-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
xapian-tools m4-doc apparmor less www-browser libmail-box-perl python3-doc
python3-tk python3-venv python3.10-venv python3.10-doc binfmt-support
ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec
texlive-fonts-recommended-doc texlive-latex-base-doc python3-pygments
icc-profiles libfile-which-perl texlive-latex-extra-doc texlive-science
texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex
texlive-pictures-doc vprerex
Recommended packages:
libfl-dev curl | wget | lynx fonts-liberation2 libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin libltdl-dev
libmail-sendmail-perl lmodern dvisvgm tex-gyre tipa
libspreadsheet-parseexcel-perl openjdk-18-jre texlive-plain-generic ruby tk
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bison bsdextrautils d-shlibs
debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file flex
fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext
gettext-base graphviz groff-base intltool-debian libapache-pom-java
libarchive-zip-perl libbrotli1 libbsd0 libcairo2 libcdt5 libcgraph6
libclang-cpp14 libclang1-14 libcommons-logging-java libcommons-parent-java
libdatrie1 libdebhelper-perl libdeflate0 libedit2 libelf1 libexpat1
libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6
libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2
libharfbuzz0b libice6 libicu71 libjbig0 libjpeg62-turbo libkpathsea6
liblab-gamut1 liblerc4 libllvm14 libltdl7 libmagic-mgc libmagic1 libmd0
libmpdec3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpathplan4 libpdfbox-java libpipeline1
libpixman-1-0 libpng16-16 libptexenc1 libpython3-stdlib
libpython3.10-minimal libpython3.10-stdlib librostlab3 librostlab3-dev
libsm6 libsub-override-perl libsynctex2 libteckit0 libtexlua53-5
libtexluajit2 libthai-data libthai0 libtiff5 libtool libuchardet0 libwebp7
libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6
libz3-4 libzzip-0-13 m4 man-db media-types po-debconf preview-latex-style
python3 python3-minimal python3.10 python3.10-minimal
sbuild-build-depends-main-dummy t1utils tex-common texlive-base
texlive-binaries texlive-fonts-recommended texlive-latex-base
texlive-latex-extra texlive-latex-recommended texlive-pictures ucf
x11-common xdg-utils
0 upgraded, 133 newly installed, 0 to remove and 41 not upgraded.
Need to get 168 MB of archives.
After this operation, 659 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf flex armhf 2.6.4-8 [412 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.7-1 [813 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.9-1 [83.3 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.7-1 [1518 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.6-1 [38.7 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.7-1 [1598 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.7-1 [547 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.6-1 [21.7 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.6-1 [38.2 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf tex-common all 6.17 [53.6 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1 [137 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-3 [34.3 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-3 [1364 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf bison armhf 2:3.8.2+dfsg-1 [1114 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf d-shlibs all 0.104 [18.6 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.9.1 [196 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.9.1 [1071 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20210910-1 [81.2 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-1 [5758 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libllvm14 armhf 1:14.0.6-2+rpi1 [19.5 MB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libclang-cpp14 armhf 1:14.0.6-2+rpi1 [9481 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libclang1-14 armhf 1:14.0.6-2+rpi1 [5235 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libxapian30 armhf 1.4.21-1 [982 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf doxygen armhf 1.9.4-3 [3849 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.38-2 [273 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.5 [416 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf fonts-lmodern all 2.005-1 [4540 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libcdt5 armhf 2.42.2-7 [59.7 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libcgraph6 armhf 2.42.2-7 [78.7 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.12-1 [60.5 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-1 [121 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-4 [290 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
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Get:76 http://172.17.4.1/private bookworm-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libgd3 armhf 2.3.3-6+b3 [117 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.0-1+rpi1 [1265 kB]
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Get:80 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-6 [496 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libltdl7 armhf 2.4.7-4 [399 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2 [1835 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [214 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [68.6 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [58.3 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libpathplan4 armhf 2.42.2-7 [62.0 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libgvc6 armhf 2.42.2-7 [585 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libgvpr2 armhf 2.42.2-7 [185 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf liblab-gamut1 armhf 2.42.2-7 [221 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libxmu6 armhf 2:1.1.3-3 [52.0 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libxaw7 armhf 2:1.0.14-1 [165 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf graphviz armhf 2.42.2-7 [500 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libapache-pom-java all 18-1 [4676 B]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libcommons-parent-java all 43-1 [10.8 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libcommons-logging-java all 1.2-3 [62.4 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libfontbox-java all 1:1.8.16-2 [211 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libkpathsea6 armhf 2022.20220321.62855-4 [165 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
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Get:115 http://172.17.4.1/private bookworm-staging/main armhf libptexenc1 armhf 2022.20220321.62855-4 [61.9 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf librostlab3 armhf 1.0.20-12 [6588 B]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf librostlab3-dev armhf 1.0.20-12 [14.2 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libsynctex2 armhf 2022.20220321.62855-4 [68.0 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libteckit0 armhf 2.5.11+ds1-1 [256 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libtexlua53-5 armhf 2022.20220321.62855-4 [102 kB]
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Get:122 http://172.17.4.1/private bookworm-staging/main armhf libxi6 armhf 2:1.8-1 [78.1 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libzzip-0-13 armhf 0.13.72+dfsg.1-1.1 [54.3 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf preview-latex-style all 12.2-1 [201 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf t1utils armhf 1.41-4 [52.3 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf texlive-binaries armhf 2022.20220321.62855-4 [7109 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf texlive-base all 2022.20220722-1 [21.9 MB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf texlive-fonts-recommended all 2022.20220722-1 [5004 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf texlive-latex-base all 2022.20220722-1 [1184 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf texlive-latex-recommended all 2022.20220722-1 [8835 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf texlive-pictures all 2022.20220722-1 [15.2 MB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf texlive-latex-extra all 2022.20220722-2 [14.7 MB]
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invoke-rc.d: could not determine current runlevel
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Setting up python3 (3.10.6-1) ...
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Not building database; man-db/auto-update is not 'true'.
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Setting up fontconfig (2.13.1-4.5) ...
Regenerating fonts cache... done.
Setting up libpango-1.0-0:armhf (1.50.10+ds-1) ...
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Setting up texlive-binaries (2022.20220321.62855-4) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
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Setting up texlive-base (2022.20220722-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libpangocairo-1.0-0:armhf (1.50.10+ds-1) ...
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Setting up graphviz (2.42.2-7) ...
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Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.34-7+rpi1) ...
Processing triggers for tex-common (6.17) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.38.90.20220713-2+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-1+rpi1 gcc-12_12.2.0-1+rpi1 libc6-dev_2.34-7+rpi1 libstdc++-12-dev_12.2.0-1+rpi1 libstdc++6_12.2.0-1+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.6.0 bash_5.2~rc2-2 binutils_2.38.90.20220713-2+rpi1 binutils-arm-linux-gnueabihf_2.38.90.20220713-2+rpi1 binutils-common_2.38.90.20220713-2+rpi1 bison_2:3.8.2+dfsg-1 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_8.32-4.1 cpp_4:12.1.0-3+rpi1 cpp-12_12.2.0-1+rpi1 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.9.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 doxygen_1.9.4-3 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 flex_2.6.4-8 fontconfig_2.13.1-4.5 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 fonts-lmodern_2.005-1 g++_4:12.1.0-3+rpi1 g++-12_12.2.0-1+rpi1 gcc_4:12.1.0-3+rpi1 gcc-12_12.2.0-1+rpi1 gcc-12-base_12.2.0-1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-9 gettext-base_0.21-9 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 graphviz_2.42.2-7 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libapache-pom-java_18-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libasan8_12.2.0-1+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-1+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.90.20220713-2+rpi1 libblkid1_2.38.1-1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.34-7+rpi1 libc-dev-bin_2.34-7+rpi1 libc6_2.34-7+rpi1 libc6-dev_2.34-7+rpi1 libcairo2_1.16.0-6 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-1+rpi1 libcdt5_2.42.2-7 libcgraph6_2.42.2-7 libclang-cpp14_1:14.0.6-2+rpi1 libclang1-14_1:14.0.6-2+rpi1 libcom-err2_1.46.5-2 libcommons-logging-java_1.2-3 libcommons-parent-java_43-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.38.90.20220713-2+rpi1 libctf0_2.38.90.20220713-2+rpi1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.9.1 libdeflate0_1.12-1 libdpkg-perl_1.21.9+rpi1 libedit2_3.1-20210910-1 libelf1_0.187-2+rpi2 libexpat1_2.4.9-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfontbox-java_1:1.8.16-2 libfontconfig1_2.13.1-4.5 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-1+rpi1 libgcc-s1_12.2.0-1+rpi1 libgcrypt20_1.10.1-2+b2 libgd3_2.3.3-6+b3 libgdbm-compat4_1.23-2 libgdbm6_1.23-2 libglib2.0-0_2.74.0-1+rpi1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.2.0-1+rpi1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libgts-0.7-5_0.7.6+darcs121130-5 libgvc6_2.42.2-7 libgvpr2_2.42.2-7 libharfbuzz0b_5.2.0-2 libhogweed6_3.8.1-2 libice6_2:1.0.10-1 libicu71_71.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.1.2-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkpathsea6_2022.20220321.62855-4 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 liblab-gamut1_2.42.2-7 libldap-2.5-0_2.5.12+dfsg-2 liblerc4_4.0.0+ds-1 libllvm14_1:14.0.6-2+rpi1 libltdl7_2.4.7-4 liblz4-1_1.9.4-1+rpi1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpango-1.0-0_1.50.10+ds-1 libpangocairo-1.0-0_1.50.10+ds-1 libpangoft2-1.0-0_1.50.10+ds-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpathplan4_2.42.2-7 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libpdfbox-java_1:1.8.16-2 libperl5.32_5.32.1-6 libperl5.34_5.34.0-5 libpipeline1_1.5.6-3 libpixman-1-0_0.40.0-1 libpng16-16_1.6.38-2 libptexenc1_2022.20220321.62855-4 libpython3-stdlib_3.10.6-1 libpython3.10-minimal_3.10.7-1 libpython3.10-stdlib_3.10.7-1 libreadline8_8.2~rc2-2 librostlab3_1.0.20-12 librostlab3-dev_1.0.20-12 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsm6_2:1.2.3-1 libsmartcols1_2.38.1-1 libsqlite3-0_3.39.3-1 libss2_1.46.5-2 libssl1.1_1.1.1o-1 libssl3_3.0.5-2 libstdc++-12-dev_12.2.0-1+rpi1 libstdc++6_12.2.0-1+rpi1 libsub-override-perl_0.09-3 libsynctex2_2022.20220321.62855-4 libsystemd0_251.3-1+rpi1 libtasn1-6_4.18.0-4 libteckit0_2.5.11+ds1-1 libtexlua53-5_2022.20220321.62855-4 libtexluajit2_2022.20220321.62855-4 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.4.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.2.0-1+rpi1 libuchardet0_0.0.7-1 libudev1_251.3-1+rpi1 libunistring2_1.0-1 libuuid1_2.38.1-1 libwebp7_1.2.2-2 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libxapian30_1.4.21-1 libxau6_1:1.0.9-1 libxaw7_2:1.0.14-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxi6_2:1.8-1 libxml2_2.9.14+dfsg-1 libxmu6_2:1.1.3-3 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1.1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libz3-4_4.8.12-1 libzstd1_1.5.2+dfsg-1 libzzip-0-13_0.13.72+dfsg.1-1.1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-3 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 preview-latex-style_12.2-1 python3_3.10.6-1 python3-minimal_3.10.6-1 python3.10_3.10.7-1 python3.10-minimal_3.10.7-1 raspbian-archive-keyring_20120528.2 readline-common_8.2~rc2-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sysvinit-utils_3.04-1 t1utils_1.41-4 tar_1.34+dfsg-1 tex-common_6.17 texlive-base_2022.20220722-1 texlive-binaries_2022.20220321.62855-4 texlive-fonts-recommended_2022.20220722-1 texlive-latex-base_2022.20220722-1 texlive-latex-extra_2022.20220722-2 texlive-latex-recommended_2022.20220722-1 texlive-pictures_2022.20220722-1 tzdata_2022c-1 ucf_3.0043 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 x11-common_1:7.7+23 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: librostlab-blast
Binary: librostlab-blast0v5, librostlab-blast0-dev, librostlab-blast-doc
Architecture: any all
Version: 1.0.1-13
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Laszlo Kajan <lkajan@rostlab.org>, Andreas Tille <tille@debian.org>
Homepage: https://rostlab.org/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/librostlab-blast
Vcs-Git: https://salsa.debian.org/med-team/librostlab-blast.git
Testsuite: autopkgtest
Testsuite-Triggers: build-essential
Build-Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra
Package-List:
librostlab-blast-doc deb doc optional arch=all
librostlab-blast0-dev deb libdevel optional arch=any
librostlab-blast0v5 deb libs optional arch=any
Checksums-Sha1:
5b5cff416807dae2daad3d17540c7fa70bb8bc70 384023 librostlab-blast_1.0.1.orig.tar.gz
666d475fcd709b263d5a16d8402a51e82b93ad20 6540 librostlab-blast_1.0.1-13.debian.tar.xz
Checksums-Sha256:
7c0a0181253b3006585b7ffb755fb9720181e70d91dd25ec511b5d88bd6ece45 384023 librostlab-blast_1.0.1.orig.tar.gz
067fb54fe8f18a5ef1d982aca23e52ce4685adf5e4609b8d3f40245a9d13283e 6540 librostlab-blast_1.0.1-13.debian.tar.xz
Files:
da93e9eed00ac33083748462b50f673f 384023 librostlab-blast_1.0.1.orig.tar.gz
0738f235ddc4811b63d72af1aedfda01 6540 librostlab-blast_1.0.1-13.debian.tar.xz
Dgit: c34fec849576d38fb1b7f38f56213c8398901edb debian archive/debian/1.0.1-13 https://git.dgit.debian.org/librostlab-blast
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.oDIiocrx/trustedkeys.kbx': General error
gpgv: Signature made Thu Sep 29 12:49:14 2022 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./librostlab-blast_1.0.1-13.dsc
dpkg-source: info: extracting librostlab-blast in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz
dpkg-source: info: unpacking librostlab-blast_1.0.1-13.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying modernize_c++.patch
dpkg-source: info: applying gcc-12.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=79d111ecf76d4d72929efb4c6c309344
JOURNAL_STREAM=8:26624
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-7c0f3a72-2762-40c3-94c8-fdd6e88bca0d
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c39483
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package librostlab-blast
dpkg-buildpackage: info: source version 1.0.1-13
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -f lib/librostlab-blast.tag
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:9: warning: The macro `AC_PROG_LIBTOOL' is obsolete.
configure.ac:9: You should run autoupdate.
m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from...
configure.ac:9: the top level
configure.ac:11: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete
./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from...
./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from...
configure.ac:11: the top level
configure.ac:7: installing './compile'
configure.ac:5: installing './missing'
lib/Makefile.am: installing './depcomp'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf=No
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf=No
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for bison... bison -y
checking for flex... flex
checking for lex output file root... lex.yy
checking for lex library... none needed
checking for library containing yywrap... no
checking whether yytext is a pointer... yes
checking for rostlab/aux_functions.h... yes
checking for rostlab/rostlab_stdexcept.h... yes
checking for doxygen... /usr/bin/doxygen
checking for perl... /usr/bin/perl
checking for dot... /usr/bin/dot
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating lib/Makefile
config.status: creating lib/Doxyfile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make all-recursive
make[3]: Entering directory '/<<PKGBUILDDIR>>'
Making all in lib
make[4]: Entering directory '/<<PKGBUILDDIR>>/lib'
mkdir -p rostlab
/bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex
/bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:1.1-9: warning: POSIX Yacc does not support %skeleton [-Wyacc]
1 | %skeleton "lalr1.cc"
| ^~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:1.11-20: warning: POSIX Yacc does not support string literals [-Wyacc]
1 | %skeleton "lalr1.cc"
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:20.1-8: warning: POSIX Yacc does not support %require [-Wyacc]
20 | %require "2.4.1"
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:20.10-16: warning: POSIX Yacc does not support string literals [-Wyacc]
20 | %require "2.4.1"
| ^~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:21.1-8: warning: POSIX Yacc does not support %defines [-Wyacc]
21 | %defines
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:22.1-7: warning: POSIX Yacc does not support %define [-Wyacc]
22 | %define namespace "rostlab::blast"
| ^~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:22.19-34: warning: POSIX Yacc does not support string literals [-Wyacc]
22 | %define namespace "rostlab::blast"
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:22.1-34: warning: deprecated directive: ‘%define namespace "rostlab::blast"’, use ‘%define api.namespace {rostlab::blast}’ [-Wdeprecated]
22 | %define namespace "rostlab::blast"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.namespace {rostlab::blast}
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:24.1-5: warning: POSIX Yacc does not support %code [-Wyacc]
24 | %code requires {
| ^~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:37.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc]
37 | %error-verbose
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:37.1-14: warning: deprecated directive: ‘%error-verbose’, use ‘%define parse.error verbose’ [-Wdeprecated]
37 | %error-verbose
| ^~~~~~~~~~~~~~
| %define parse.error verbose
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:39.1-15: warning: POSIX Yacc does not support %initial-action [-Wyacc]
39 | %initial-action
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:53.1-5: warning: POSIX Yacc does not support %code [-Wyacc]
53 | %code {
| ^~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:59.29-41: warning: POSIX Yacc does not support string literals [-Wyacc]
59 | %token END 0 "end of file"
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:72.29-36: warning: POSIX Yacc does not support string literals [-Wyacc]
72 | %token QUERYEQ "Query="
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:73.29-39: warning: POSIX Yacc does not support string literals [-Wyacc]
73 | %token DATABASECOLON "Database:"
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:74.29-48: warning: POSIX Yacc does not support string literals [-Wyacc]
74 | %token RESFROMROUND "Results from round"
| ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:75.29-37: warning: POSIX Yacc does not support string literals [-Wyacc]
75 | %token SCOREEQ "Score ="
| ^~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:76.29-38: warning: POSIX Yacc does not support string literals [-Wyacc]
76 | %token EXPECTEQ "Expect ="
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:77.29-37: warning: POSIX Yacc does not support string literals [-Wyacc]
77 | %token METHODCOLON "Method:"
| ^~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:78.29-42: warning: POSIX Yacc does not support string literals [-Wyacc]
78 | %token IDENTITIESEQ "Identities ="
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:79.29-41: warning: POSIX Yacc does not support string literals [-Wyacc]
79 | %token POSITIVESEQ "Positives ="
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:80.29-36: warning: POSIX Yacc does not support string literals [-Wyacc]
80 | %token GAPSEQ "Gaps ="
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:81.29-38: warning: POSIX Yacc does not support string literals [-Wyacc]
81 | %token STRANDEQ "Strand ="
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:82.29-37: warning: POSIX Yacc does not support string literals [-Wyacc]
82 | %token FRAMEEQ "Frame ="
| ^~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:83.29-36: warning: POSIX Yacc does not support string literals [-Wyacc]
83 | %token QUERYCOLON "Query:"
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:84.29-36: warning: POSIX Yacc does not support string literals [-Wyacc]
84 | %token SBJCTCOLON "Sbjct:"
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:88.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc]
88 | %destructor { delete $$; } <sval>
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:90.1-8: warning: POSIX Yacc does not support %printer [-Wyacc]
90 | %printer { debug_stream () << *$$; } <sval>
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:91.1-8: warning: POSIX Yacc does not support %printer [-Wyacc]
91 | %printer { debug_stream () << $$; } <ival>
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:109.9-16: warning: POSIX Yacc does not support string literals [-Wyacc]
109 | query: "Query=" STRING INT
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:122.11-21: warning: POSIX Yacc does not support string literals [-Wyacc]
122 | database: "Database:" STRING INT INT
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:137.15-34: warning: POSIX Yacc does not support string literals [-Wyacc]
137 | | "Results from round" INT
| ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:201.19-27: warning: POSIX Yacc does not support string literals [-Wyacc]
201 | hsp_headerfield: "Score =" num INT
| ^~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:203.19-28: warning: POSIX Yacc does not support string literals [-Wyacc]
203 | | "Expect =" num
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:205.19-27: warning: POSIX Yacc does not support string literals [-Wyacc]
205 | | "Method:" STRING
| ^~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:207.19-32: warning: POSIX Yacc does not support string literals [-Wyacc]
207 | | "Identities =" INT
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:209.19-31: warning: POSIX Yacc does not support string literals [-Wyacc]
209 | | "Positives =" INT
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:211.19-26: warning: POSIX Yacc does not support string literals [-Wyacc]
211 | | "Gaps =" INT
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:213.19-28: warning: POSIX Yacc does not support string literals [-Wyacc]
213 | | "Strand =" STRING '/' STRING
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:215.19-27: warning: POSIX Yacc does not support string literals [-Wyacc]
215 | | "Frame =" INT '/' INT
| ^~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:217.19-27: warning: POSIX Yacc does not support string literals [-Wyacc]
217 | | "Frame =" INT
| ^~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:224.15-22: warning: POSIX Yacc does not support string literals [-Wyacc]
224 | alitriple: "Query:" INT STRING INT STRING "Sbjct:" INT STRING INT
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:224.46-53: warning: POSIX Yacc does not support string literals [-Wyacc]
224 | alitriple: "Query:" INT STRING INT STRING "Sbjct:" INT STRING INT
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:247.15-22: warning: POSIX Yacc does not support string literals [-Wyacc]
247 | | "Query:" '0' /* bug as far as I can tell */
| ^~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp:22.1-34: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated]
22 | %define namespace "rostlab::blast"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/lib/blast-parser-parser.ypp: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
updating rostlab/blast-parser-location.h
updating rostlab/blast-parser-position.h
updating rostlab/blast-parser-stack.h
updating rostlab/blast-parser-parser.h
sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp
sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h
sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h
make all-am
make[5]: Entering directory '/<<PKGBUILDDIR>>/lib'
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp
\
\
/bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f 'librostlab_blast_la-blast-parser-scanner.cpp' || echo './'`librostlab_blast_la-blast-parser-scanner.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o
In file included from /usr/include/c++/12/vector:63,
from ./rostlab/blast-result.h:24,
from blast-parser-parser.ypp:26,
from rostlab/blast-parser-driver.h:26,
from blast-parser-driver.cpp:19:
/usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, vector<rostlab::blast::hsp> >; _ForwardIterator = rostlab::blast::hsp*]’:
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >’ changed in GCC 7.1
113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >’ changed in GCC 7.1
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >; _ForwardIterator = rostlab::blast::hsp*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, vector<rostlab::blast::hsp> >; _ForwardIterator = rostlab::blast::hsp*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, vector<rostlab::blast::hsp> >; _ForwardIterator = rostlab::blast::hsp*; _Tp = rostlab::blast::hsp]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >; _Tp = rostlab::blast::hsp; _Alloc = std::allocator<rostlab::blast::hsp>]’ at /usr/include/c++/12/bits/stl_vector.h:1617:35,
inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = rostlab::blast::hsp; _Alloc = std::allocator<rostlab::blast::hsp>]’ at /usr/include/c++/12/bits/vector.tcc:232:44:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >; _ForwardIterator = rostlab::blast::hsp*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, vector<rostlab::blast::hsp> >; _ForwardIterator = rostlab::blast::hsp*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, vector<rostlab::blast::hsp> >; _ForwardIterator = rostlab::blast::hsp*; _Tp = rostlab::blast::hsp]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = rostlab::blast::hsp; _Alloc = std::allocator<rostlab::blast::hsp>]’ at /usr/include/c++/12/bits/stl_vector.h:601:31,
inlined from ‘rostlab::blast::hit::hit(const rostlab::blast::hit&)’ at ./rostlab/blast-result.h:140:8,
inlined from ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = rostlab::blast::hit; _Args = {const rostlab::blast::hit&}]’ at /usr/include/c++/12/bits/stl_construct.h:119:7,
inlined from ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hit*, vector<rostlab::blast::hit> >; _ForwardIterator = rostlab::blast::hit*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:120:21,
inlined from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hit*, std::vector<rostlab::blast::hit> >; _ForwardIterator = rostlab::blast::hit*; bool _TrivialValueTypes = false]’ at /usr/include/c++/12/bits/stl_uninitialized.h:137:32,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hit*, vector<rostlab::blast::hit> >; _ForwardIterator = rostlab::blast::hit*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hit*, vector<rostlab::blast::hit> >; _ForwardIterator = rostlab::blast::hit*; _Tp = rostlab::blast::hit]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hit*, std::vector<rostlab::blast::hit> >; _Tp = rostlab::blast::hit; _Alloc = std::allocator<rostlab::blast::hit>]’ at /usr/include/c++/12/bits/stl_vector.h:1617:35,
inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = rostlab::blast::hit; _Alloc = std::allocator<rostlab::blast::hit>]’ at /usr/include/c++/12/bits/vector.tcc:232:44,
inlined from ‘rostlab::blast::result& rostlab::blast::result::operator=(const rostlab::blast::result&)’ at ./rostlab/blast-result.h:164:8,
inlined from ‘const rostlab::blast::parser_driver::result_type& rostlab::blast::parser_driver::parse(bool, bool)’ at blast-parser-driver.cpp:29:25:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >; _ForwardIterator = rostlab::blast::hsp*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, vector<rostlab::blast::hsp> >; _ForwardIterator = rostlab::blast::hsp*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, vector<rostlab::blast::hsp> >; _ForwardIterator = rostlab::blast::hsp*; _Tp = rostlab::blast::hsp]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = rostlab::blast::hsp; _Alloc = std::allocator<rostlab::blast::hsp>]’ at /usr/include/c++/12/bits/stl_vector.h:601:31,
inlined from ‘rostlab::blast::hit::hit(const rostlab::blast::hit&)’ at ./rostlab/blast-result.h:140:8,
inlined from ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = rostlab::blast::hit; _Args = {rostlab::blast::hit&}]’ at /usr/include/c++/12/bits/stl_construct.h:119:7,
inlined from ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = rostlab::blast::hit*; _ForwardIterator = rostlab::blast::hit*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:120:21,
inlined from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = rostlab::blast::hit*; _ForwardIterator = rostlab::blast::hit*; bool _TrivialValueTypes = false]’ at /usr/include/c++/12/bits/stl_uninitialized.h:137:32,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = rostlab::blast::hit*; _ForwardIterator = rostlab::blast::hit*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = rostlab::blast::hit*; _ForwardIterator = rostlab::blast::hit*; _Tp = rostlab::blast::hit]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = rostlab::blast::hit; _Alloc = std::allocator<rostlab::blast::hit>]’ at /usr/include/c++/12/bits/vector.tcc:251:35,
inlined from ‘rostlab::blast::result& rostlab::blast::result::operator=(const rostlab::blast::result&)’ at ./rostlab/blast-result.h:164:8,
inlined from ‘const rostlab::blast::parser_driver::result_type& rostlab::blast::parser_driver::parse(bool, bool)’ at blast-parser-driver.cpp:29:25:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from ./rostlab/blast-result.h:24,
from blast-parser-parser.ypp:26,
from blast-parser-parser.cpp:41:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const rostlab::blast::oneline&}; _Tp = rostlab::blast::oneline; _Alloc = std::allocator<rostlab::blast::oneline>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<rostlab::blast::oneline>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {rostlab::blast::hsp}; _Tp = rostlab::blast::hsp; _Alloc = std::allocator<rostlab::blast::hsp>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<rostlab::blast::hsp>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:63:
/usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator<rostlab::blast::parser::stack_symbol_type*>; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*]’:
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator<rostlab::blast::parser::stack_symbol_type*>’ changed in GCC 7.1
113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator<rostlab::blast::parser::stack_symbol_type*>’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {rostlab::blast::parser::stack_symbol_type}; _Tp = rostlab::blast::parser::stack_symbol_type; _Alloc = std::allocator<rostlab::blast::parser::stack_symbol_type>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<rostlab::blast::parser::stack_symbol_type, std::allocator<rostlab::blast::parser::stack_symbol_type> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<rostlab::blast::parser::stack_symbol_type*>; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator<rostlab::blast::parser::stack_symbol_type*>; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator<rostlab::blast::parser::stack_symbol_type*>; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*; _Tp = rostlab::blast::parser::stack_symbol_type]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = rostlab::blast::parser::stack_symbol_type*; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*; _Allocator = allocator<rostlab::blast::parser::stack_symbol_type>]’ at /usr/include/c++/12/bits/stl_uninitialized.h:397:2,
inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {rostlab::blast::parser::stack_symbol_type}; _Tp = rostlab::blast::parser::stack_symbol_type; _Alloc = std::allocator<rostlab::blast::parser::stack_symbol_type>]’ at /usr/include/c++/12/bits/vector.tcc:487:3:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator<rostlab::blast::parser::stack_symbol_type*>’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<rostlab::blast::parser::stack_symbol_type*>; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator<rostlab::blast::parser::stack_symbol_type*>; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator<rostlab::blast::parser::stack_symbol_type*>; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*; _Tp = rostlab::blast::parser::stack_symbol_type]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = rostlab::blast::parser::stack_symbol_type*; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*; _Allocator = allocator<rostlab::blast::parser::stack_symbol_type>]’ at /usr/include/c++/12/bits/stl_uninitialized.h:397:2,
inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {rostlab::blast::parser::stack_symbol_type}; _Tp = rostlab::blast::parser::stack_symbol_type; _Alloc = std::allocator<rostlab::blast::parser::stack_symbol_type>]’ at /usr/include/c++/12/bits/vector.tcc:494:3:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator<rostlab::blast::parser::stack_symbol_type*>’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {rostlab::blast::parser::stack_symbol_type}; _Tp = rostlab::blast::parser::stack_symbol_type; _Alloc = std::allocator<rostlab::blast::parser::stack_symbol_type>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = rostlab::blast::parser::stack_symbol_type; _Alloc = std::allocator<rostlab::blast::parser::stack_symbol_type>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void rostlab::blast::parser::stack<T, S>::push(T&&) [with T = rostlab::blast::parser::stack_symbol_type; S = std::vector<rostlab::blast::parser::stack_symbol_type, std::allocator<rostlab::blast::parser::stack_symbol_type> >]’ at rostlab/blast-parser-parser.h:761:24,
inlined from ‘void rostlab::blast::parser::yypush_(const char*, stack_symbol_type&&)’ at blast-parser-parser.cpp:443:19:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<rostlab::blast::parser::stack_symbol_type*, std::vector<rostlab::blast::parser::stack_symbol_type, std::allocator<rostlab::blast::parser::stack_symbol_type> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-driver.cpp -o librostlab_blast_la-blast-parser-driver.o >/dev/null 2>&1
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = rostlab::blast::oneline; _Alloc = std::allocator<rostlab::blast::oneline>]’,
inlined from ‘virtual int rostlab::blast::parser::parse()’ at blast-parser-parser.ypp:160:33:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<rostlab::blast::oneline*, std::vector<rostlab::blast::oneline> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {rostlab::blast::hsp}; _Tp = rostlab::blast::hsp; _Alloc = std::allocator<rostlab::blast::hsp>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = rostlab::blast::hsp; _Alloc = std::allocator<rostlab::blast::hsp>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘virtual int rostlab::blast::parser::parse()’ at blast-parser-parser.ypp:202:69:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<rostlab::blast::hsp*, std::vector<rostlab::blast::hsp> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-parser.cpp -o librostlab_blast_la-blast-parser-parser.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=link g++ -Wall -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -Wall -Wl,-z,relro -Wl,-z,now -o librostlab-blast.la -rpath /usr/lib/arm-linux-gnueabihf librostlab_blast_la-blast-parser-driver.lo librostlab_blast_la-blast-parser-parser.lo librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o .libs/librostlab_blast_la-blast-parser-driver.o .libs/librostlab_blast_la-blast-parser-parser.o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librostlab-blast.so.0 -o .libs/librostlab-blast.so.0.0.0
libtool: link: (cd ".libs" && rm -f "librostlab-blast.so.0" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so.0")
libtool: link: (cd ".libs" && rm -f "librostlab-blast.so" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so")
libtool: link: ar cr .libs/librostlab-blast.a librostlab_blast_la-blast-parser-driver.o librostlab_blast_la-blast-parser-parser.o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o
libtool: link: ranlib .libs/librostlab-blast.a
libtool: link: ( cd ".libs" && rm -f "librostlab-blast.la" && ln -s "../librostlab-blast.la" "librostlab-blast.la" )
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SRCDIR='.' PROJECT='librostlab-blast' DOCDIR='../doxygen-doc' VERSION='1.0.1' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='NO' /usr/bin/doxygen ./Doxyfile
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/<<PKGBUILDDIR>>/lib/rostlab/blast-parser-location.h:34: warning: the name 'location.hh' supplied as the argument in the \file statement is not an input file
/<<PKGBUILDDIR>>/lib/rostlab/blast-parser-parser.h:35: warning: the name 'y.tab.h' supplied as the argument in the \file statement is not an input file
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/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ../libtool --mode=install /usr/bin/install -c librostlab-blast.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/librostlab-blast.so.0.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so.0 || { rm -f librostlab-blast.so.0 && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so || { rm -f librostlab-blast.so && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so; }; })
libtool: install: /usr/bin/install -c .libs/librostlab-blast.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.la
libtool: install: /usr/bin/install -c .libs/librostlab-blast.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/rostlab'
/usr/bin/install -c -m 644 rostlab/blast-parser-driver.h rostlab/blast-result.h '/<<PKGBUILDDIR>>/debian/tmp/usr/include/rostlab'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/rostlab'
/usr/bin/install -c -m 644 rostlab/blast-parser-location.h rostlab/blast-parser-parser.h rostlab/blast-parser-position.h rostlab/blast-parser-stack.h '/<<PKGBUILDDIR>>/debian/tmp/usr/include/rostlab'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/lib'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/lib'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/lib'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/librostlab-blast/examples'
/usr/bin/install -c -m 644 examples/converged.ali examples/parseblast.cpp '/<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/librostlab-blast/examples'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
d-shlibmove --commit \
--multiarch \
--exclude-la \
--v5 \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.a debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf
PKGDEV=librostlab-blast0-dev
PKGSHL=librostlab-blast0v5
install -d -m 755 debian/librostlab-blast0-dev/usr/include
mv debian/tmp/usr/include/rostlab debian/librostlab-blast0-dev/usr/include
find debian -name "lib*.la" -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_perl -a
debian/rules override_dh_link
make[1]: Entering directory '/<<PKGBUILDDIR>>'
find debian -name jquery.js -delete
dh_link
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress -Xlibrostlab-blast.tag
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'librostlab-blast0v5' in '../librostlab-blast0v5_1.0.1-13_armhf.deb'.
dpkg-deb: building package 'librostlab-blast0v5-dbgsym' in '../librostlab-blast0v5-dbgsym_1.0.1-13_armhf.deb'.
dpkg-deb: building package 'librostlab-blast0-dev' in '../librostlab-blast0-dev_1.0.1-13_armhf.deb'.
dpkg-genbuildinfo --build=any -O../librostlab-blast_1.0.1-13_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../librostlab-blast_1.0.1-13_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-10-01T23:00:11Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
librostlab-blast_1.0.1-13_armhf.changes:
----------------------------------------
Format: 1.8
Date: Thu, 29 Sep 2022 14:37:03 +0200
Source: librostlab-blast
Binary: librostlab-blast0-dev librostlab-blast0v5 librostlab-blast0v5-dbgsym
Architecture: armhf
Version: 1.0.1-13
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
librostlab-blast0-dev - very fast C++ library for parsing the output of NCBI BLAST progra
librostlab-blast0v5 - very fast C++ library for parsing the output of NCBI BLAST progra
Closes: 1012990
Changes:
librostlab-blast (1.0.1-13) unstable; urgency=medium
.
* Team upload.
* gcc-12.patch: added; fix ftbfs with gcc-12. (Closes: #1012990)
* Standards-Version: 4.6.1 (routine-update)
* d/rules: filter librostlab-blast.tag to remove build path; attempt to
improve build reproducibility.
* d/rules: limit dh_installdocs to architecture independent builds.
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Checksums-Sha256:
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Files:
fb44c1846f1dc3dea1fdf4bff09cce3d 89004 libdevel optional librostlab-blast0-dev_1.0.1-13_armhf.deb
1949b19d4ffbf6b14e0026569ea8b7bf 449740 debug optional librostlab-blast0v5-dbgsym_1.0.1-13_armhf.deb
eda8cb21748aeadf0922260a350b0cc5 73120 libs optional librostlab-blast0v5_1.0.1-13_armhf.deb
44809ef2b6596291e1343812a7efbebc 9453 science optional librostlab-blast_1.0.1-13_armhf.buildinfo
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: librostlab-blast
Binary: librostlab-blast0-dev librostlab-blast0v5 librostlab-blast0v5-dbgsym
Architecture: armhf
Version: 1.0.1-13
Checksums-Md5:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 01 Oct 2022 23:00:10 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
adduser (= 3.129),
apt (= 2.5.2),
autoconf (= 2.71-2),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-9),
autotools-dev (= 20220109.1),
base-files (= 12.2+rpi1),
base-passwd (= 3.6.0),
bash (= 5.2~rc2-2),
binutils (= 2.38.90.20220713-2+rpi1),
binutils-arm-linux-gnueabihf (= 2.38.90.20220713-2+rpi1),
binutils-common (= 2.38.90.20220713-2+rpi1),
bison (= 2:3.8.2+dfsg-1),
bsdextrautils (= 2.38.1-1),
bsdutils (= 1:2.38.1-1),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
coreutils (= 8.32-4.1),
cpp (= 4:12.1.0-3+rpi1),
cpp-12 (= 12.2.0-1+rpi1),
d-shlibs (= 0.104),
dash (= 0.5.11+git20210903+057cd650a4ed-9),
debconf (= 1.5.79),
debhelper (= 13.9.1),
debianutils (= 5.7-0.3),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.13.0-1),
diffutils (= 1:3.8-1),
dirmngr (= 2.2.39-1),
doxygen (= 1.9.4-3),
dpkg (= 1.21.9+rpi1),
dpkg-dev (= 1.21.9+rpi1),
dwz (= 0.14-1),
file (= 1:5.41-4),
findutils (= 4.9.0-3),
flex (= 2.6.4-8),
fontconfig (= 2.13.1-4.5),
fontconfig-config (= 2.13.1-4.5),
fonts-dejavu-core (= 2.37-2),
fonts-lmodern (= 2.005-1),
g++ (= 4:12.1.0-3+rpi1),
g++-12 (= 12.2.0-1+rpi1),
gcc (= 4:12.1.0-3+rpi1),
gcc-12 (= 12.2.0-1+rpi1),
gcc-12-base (= 12.2.0-1+rpi1),
gettext (= 0.21-9),
gettext-base (= 0.21-9),
gnupg (= 2.2.39-1),
gnupg-l10n (= 2.2.39-1),
gnupg-utils (= 2.2.39-1),
gpg (= 2.2.39-1),
gpg-agent (= 2.2.39-1),
gpg-wks-client (= 2.2.39-1),
gpg-wks-server (= 2.2.39-1),
gpgconf (= 2.2.39-1),
gpgsm (= 2.2.39-1),
gpgv (= 2.2.39-1),
graphviz (= 2.42.2-7),
grep (= 3.7-1),
groff-base (= 1.22.4-8),
gzip (= 1.12-1),
hostname (= 3.23),
init-system-helpers (= 1.64),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.3.1-1),
libapache-pom-java (= 18-1),
libapt-pkg6.0 (= 2.5.2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 12.2.0-1+rpi1),
libassuan0 (= 2.5.5-4),
libatomic1 (= 12.2.0-1+rpi1),
libattr1 (= 1:2.5.1-1),
libaudit-common (= 1:3.0.7-1),
libaudit1 (= 1:3.0.7-1+b1),
libbinutils (= 2.38.90.20220713-2+rpi1),
libblkid1 (= 2.38.1-1),
libbrotli1 (= 1.0.9-2+b2),
libbsd0 (= 0.11.6-1),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.34-7+rpi1),
libc-dev-bin (= 2.34-7+rpi1),
libc6 (= 2.34-7+rpi1),
libc6-dev (= 2.34-7+rpi1),
libcairo2 (= 1.16.0-6),
libcap-ng0 (= 0.8.3-1),
libcap2 (= 1:2.44-1),
libcc1-0 (= 12.2.0-1+rpi1),
libcdt5 (= 2.42.2-7),
libcgraph6 (= 2.42.2-7),
libclang-cpp14 (= 1:14.0.6-2+rpi1),
libclang1-14 (= 1:14.0.6-2+rpi1),
libcom-err2 (= 1.46.5-2),
libcommons-logging-java (= 1.2-3),
libcommons-parent-java (= 43-1),
libcrypt-dev (= 1:4.4.28-2),
libcrypt1 (= 1:4.4.28-2),
libctf-nobfd0 (= 2.38.90.20220713-2+rpi1),
libctf0 (= 2.38.90.20220713-2+rpi1),
libdatrie1 (= 0.2.13-2+b2),
libdb5.3 (= 5.3.28+dfsg1-0.10),
libdebconfclient0 (= 0.264),
libdebhelper-perl (= 13.9.1),
libdeflate0 (= 1.12-1),
libdpkg-perl (= 1.21.9+rpi1),
libedit2 (= 3.1-20210910-1),
libelf1 (= 0.187-2+rpi2),
libexpat1 (= 2.4.9-1),
libffi8 (= 3.4.2-4),
libfile-stripnondeterminism-perl (= 1.13.0-1),
libfontbox-java (= 1:1.8.16-2),
libfontconfig1 (= 2.13.1-4.5),
libfreetype6 (= 2.12.1+dfsg-3),
libfribidi0 (= 1.0.8-2.1),
libgcc-12-dev (= 12.2.0-1+rpi1),
libgcc-s1 (= 12.2.0-1+rpi1),
libgcrypt20 (= 1.10.1-2+b2),
libgd3 (= 2.3.3-6+b3),
libgdbm-compat4 (= 1.23-2),
libgdbm6 (= 1.23-2),
libglib2.0-0 (= 2.74.0-1+rpi1),
libgmp10 (= 2:6.2.1+dfsg1-1),
libgnutls30 (= 3.7.7-2),
libgomp1 (= 12.2.0-1+rpi1),
libgpg-error0 (= 1.45-2),
libgraphite2-3 (= 1.3.14-1),
libgssapi-krb5-2 (= 1.20-1),
libgts-0.7-5 (= 0.7.6+darcs121130-5),
libgvc6 (= 2.42.2-7),
libgvpr2 (= 2.42.2-7),
libharfbuzz0b (= 5.2.0-2),
libhogweed6 (= 3.8.1-2),
libice6 (= 2:1.0.10-1),
libicu71 (= 71.1-3),
libidn2-0 (= 2.3.3-1),
libisl23 (= 0.25-1),
libjbig0 (= 2.1-3.1+b2),
libjpeg62-turbo (= 1:2.1.2-1),
libk5crypto3 (= 1.20-1),
libkeyutils1 (= 1.6.3-1),
libkpathsea6 (= 2022.20220321.62855-4),
libkrb5-3 (= 1.20-1),
libkrb5support0 (= 1.20-1),
libksba8 (= 1.6.0-3),
liblab-gamut1 (= 2.42.2-7),
libldap-2.5-0 (= 2.5.12+dfsg-2),
liblerc4 (= 4.0.0+ds-1),
libllvm14 (= 1:14.0.6-2+rpi1),
libltdl7 (= 2.4.7-4),
liblz4-1 (= 1.9.4-1+rpi1),
liblzma5 (= 5.2.5-2.1),
libmagic-mgc (= 1:5.41-4),
libmagic1 (= 1:5.41-4),
libmd0 (= 1.0.4-2),
libmount1 (= 2.38.1-1),
libmpc3 (= 1.2.1-2),
libmpdec3 (= 2.5.1-2+rpi1),
libmpfr6 (= 4.1.0-3),
libncursesw6 (= 6.3+20220423-2),
libnettle8 (= 3.8.1-2),
libnpth0 (= 1.6-3),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit0 (= 0.24.1-1),
libpam-modules (= 1.5.2-2),
libpam-modules-bin (= 1.5.2-2),
libpam-runtime (= 1.5.2-2),
libpam0g (= 1.5.2-2),
libpango-1.0-0 (= 1.50.10+ds-1),
libpangocairo-1.0-0 (= 1.50.10+ds-1),
libpangoft2-1.0-0 (= 1.50.10+ds-1),
libpaper-utils (= 1.1.28),
libpaper1 (= 1.1.28),
libpathplan4 (= 2.42.2-7),
libpcre2-8-0 (= 10.40-1+b2),
libpcre3 (= 2:8.39-14),
libpdfbox-java (= 1:1.8.16-2),
libperl5.34 (= 5.34.0-5),
libpipeline1 (= 1.5.6-3),
libpixman-1-0 (= 0.40.0-1),
libpng16-16 (= 1.6.38-2),
libptexenc1 (= 2022.20220321.62855-4),
libpython3-stdlib (= 3.10.6-1),
libpython3.10-minimal (= 3.10.7-1),
libpython3.10-stdlib (= 3.10.7-1),
libreadline8 (= 8.2~rc2-2),
librostlab3 (= 1.0.20-12),
librostlab3-dev (= 1.0.20-12),
libsasl2-2 (= 2.1.28+dfsg-8),
libsasl2-modules-db (= 2.1.28+dfsg-8),
libseccomp2 (= 2.5.4-1+rpi1),
libselinux1 (= 3.4-1),
libsemanage-common (= 3.4-1),
libsemanage2 (= 3.4-1),
libsepol2 (= 3.4-2),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.38.1-1),
libsqlite3-0 (= 3.39.3-1),
libssl3 (= 3.0.5-2),
libstdc++-12-dev (= 12.2.0-1+rpi1),
libstdc++6 (= 12.2.0-1+rpi1),
libsub-override-perl (= 0.09-3),
libsynctex2 (= 2022.20220321.62855-4),
libsystemd0 (= 251.3-1+rpi1),
libtasn1-6 (= 4.18.0-4),
libteckit0 (= 2.5.11+ds1-1),
libtexlua53-5 (= 2022.20220321.62855-4),
libtexluajit2 (= 2022.20220321.62855-4),
libthai-data (= 0.1.29-1),
libthai0 (= 0.1.29-1),
libtiff5 (= 4.4.0-4),
libtinfo6 (= 6.3+20220423-2),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtool (= 2.4.7-4),
libubsan1 (= 12.2.0-1+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 251.3-1+rpi1),
libunistring2 (= 1.0-1),
libuuid1 (= 2.38.1-1),
libwebp7 (= 1.2.2-2),
libx11-6 (= 2:1.8.1-2),
libx11-data (= 2:1.8.1-2),
libxapian30 (= 1.4.21-1),
libxau6 (= 1:1.0.9-1),
libxaw7 (= 2:1.0.14-1),
libxcb-render0 (= 1.15-1),
libxcb-shm0 (= 1.15-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.4-1),
libxi6 (= 2:1.8-1),
libxml2 (= 2.9.14+dfsg-1),
libxmu6 (= 2:1.1.3-3),
libxpm4 (= 1:3.5.12-1),
libxrender1 (= 1:0.9.10-1.1),
libxt6 (= 1:1.2.1-1),
libxxhash0 (= 0.8.1-1),
libz3-4 (= 4.8.12-1),
libzstd1 (= 1.5.2+dfsg-1),
libzzip-0-13 (= 0.13.72+dfsg.1-1.1),
linux-libc-dev (= 5.19.6-1+rpi1),
login (= 1:4.11.1+dfsg1-2),
lsb-base (= 11.2+rpi1),
m4 (= 1.4.19-1),
make (= 4.3-4.1),
man-db (= 2.10.2-3),
mawk (= 1.3.4.20200120-3.1),
media-types (= 8.0.0),
ncurses-base (= 6.3+20220423-2),
ncurses-bin (= 6.3+20220423-2),
passwd (= 1:4.11.1+dfsg1-2),
patch (= 2.7.6-7),
perl (= 5.34.0-5),
perl-base (= 5.34.0-5),
perl-modules-5.34 (= 5.34.0-5),
pinentry-curses (= 1.2.0-2),
po-debconf (= 1.0.21+nmu1),
preview-latex-style (= 12.2-1),
python3 (= 3.10.6-1),
python3-minimal (= 3.10.6-1),
python3.10 (= 3.10.7-1),
python3.10-minimal (= 3.10.7-1),
raspbian-archive-keyring (= 20120528.2),
readline-common (= 8.2~rc2-2),
rpcsvc-proto (= 1.4.2-4),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sgml-base (= 1.30),
sysvinit-utils (= 3.04-1),
t1utils (= 1.41-4),
tar (= 1.34+dfsg-1),
tex-common (= 6.17),
texlive-base (= 2022.20220722-1),
texlive-binaries (= 2022.20220321.62855-4),
texlive-fonts-recommended (= 2022.20220722-1),
texlive-latex-base (= 2022.20220722-1),
texlive-latex-extra (= 2022.20220722-2),
texlive-latex-recommended (= 2022.20220722-1),
texlive-pictures (= 2022.20220722-1),
ucf (= 3.0043),
util-linux (= 2.38.1-1),
util-linux-extra (= 2.38.1-1),
x11-common (= 1:7.7+23),
xdg-utils (= 1.1.3-4.1),
xz-utils (= 5.2.5-2.1),
zlib1g (= 1:1.2.11.dfsg-4.1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1664455023"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
librostlab-blast0-dev_1.0.1-13_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 89004 bytes: control archive=1224 bytes.
971 bytes, 24 lines control
1139 bytes, 14 lines md5sums
Package: librostlab-blast0-dev
Source: librostlab-blast
Version: 1.0.1-13
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1375
Depends: librostlab-blast0v5 (= 1.0.1-13), librostlab-dev
Suggests: librostlab-blast-doc
Conflicts: librostlab-blast-dev
Provides: librostlab-blast-dev
Section: libdevel
Priority: optional
Homepage: https://rostlab.org/
Description: very fast C++ library for parsing the output of NCBI BLAST programs (devel)
This package provides a very fast library for parsing the default output of
NCBI BLAST programs into a C++ structure.
.
libzerg is faster, but it provides only lexing (i.e. it only returns pairs
of token identifiers and token string values). librostlab-blast uses a
parser generated with bison on top of a flex-generated lexer very similar to
that of libzerg.
.
This package contains files necessary for developing applications with
librostlab-blast.
drwxr-xr-x root/root 0 2022-09-29 12:37 ./
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/include/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/include/rostlab/
-rw-r--r-- root/root 4139 2022-09-29 12:37 ./usr/include/rostlab/blast-parser-driver.h
-rw-r--r-- root/root 8083 2022-09-29 12:37 ./usr/include/rostlab/blast-parser-location.h
-rw-r--r-- root/root 27508 2022-09-29 12:37 ./usr/include/rostlab/blast-parser-parser.h
-rw-r--r-- root/root 421 2022-09-29 12:37 ./usr/include/rostlab/blast-parser-position.h
-rw-r--r-- root/root 320 2022-09-29 12:37 ./usr/include/rostlab/blast-parser-stack.h
-rw-r--r-- root/root 10981 2022-09-29 12:37 ./usr/include/rostlab/blast-result.h
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 1327636 2022-09-29 12:37 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.a
lrwxrwxrwx root/root 0 2022-09-29 12:37 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.so -> librostlab-blast.so.0.0.0
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/
-rw-r--r-- root/root 816 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/README.test
-rw-r--r-- root/root 1993 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/changelog.Debian.gz
-rw-r--r-- root/root 210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0-dev/changelog.gz
-rw-r--r-- root/root 2021 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/copyright
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/examples/
-rw-r--r-- root/root 4462 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/examples/converged.ali
-rw-r--r-- root/root 324 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/examples/parseblast.cpp
-rw-r--r-- root/root 712 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/run-unit-test
librostlab-blast0v5-dbgsym_1.0.1-13_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 449740 bytes: control archive=548 bytes.
417 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: librostlab-blast0v5-dbgsym
Source: librostlab-blast
Version: 1.0.1-13
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 467
Depends: librostlab-blast0v5 (= 1.0.1-13)
Section: debug
Priority: optional
Description: debug symbols for librostlab-blast0v5
Build-Ids: 6b21b01615c9c1d5e117a7ca53643abc44ecc535
drwxr-xr-x root/root 0 2022-09-29 12:37 ./
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/debug/.build-id/6b/
-rw-r--r-- root/root 467212 2022-09-29 12:37 ./usr/lib/debug/.build-id/6b/21b01615c9c1d5e117a7ca53643abc44ecc535.debug
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0v5-dbgsym -> librostlab-blast0v5
librostlab-blast0v5_1.0.1-13_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 73120 bytes: control archive=1000 bytes.
850 bytes, 21 lines control
335 bytes, 4 lines md5sums
50 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: librostlab-blast0v5
Source: librostlab-blast
Version: 1.0.1-13
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1298
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 11)
Conflicts: librostlab-blast0
Section: libs
Priority: optional
Homepage: https://rostlab.org/
Description: very fast C++ library for parsing the output of NCBI BLAST programs
This package provides a very fast library for parsing the default output of
NCBI BLAST programs into a C++ structure.
.
libzerg is faster, but it provides only lexing (i.e. it only returns pairs
of token identifiers and token string values). librostlab-blast uses a
parser generated with bison on top of a flex-generated lexer very similar to
that of libzerg.
.
This package contains the shared library.
drwxr-xr-x root/root 0 2022-09-29 12:37 ./
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2022-09-29 12:37 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0 -> librostlab-blast.so.0.0.0
-rw-r--r-- root/root 1312160 2022-09-29 12:37 ./usr/lib/arm-linux-gnueabihf/librostlab-blast.so.0.0.0
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0v5/
-rw-r--r-- root/root 1993 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0v5/changelog.Debian.gz
-rw-r--r-- root/root 210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0v5/changelog.gz
-rw-r--r-- root/root 2021 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0v5/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 30996
Build-Time: 80
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 998
Job: librostlab-blast_1.0.1-13
Machine Architecture: armhf
Package: librostlab-blast
Package-Time: 1116
Source-Version: 1.0.1-13
Space: 30996
Status: successful
Version: 1.0.1-13
--------------------------------------------------------------------------------
Finished at 2022-10-01T23:00:11Z
Build needed 00:18:36, 30996k disk space