libpdb-redo →
2.0.3-1 →
armhf → 2022-02-06 05:31:13
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| libpdb-redo 2.0.3-1 (armhf) Sun, 06 Feb 2022 05:19:41 +0000 |
+==============================================================================+
Package: libpdb-redo
Version: 2.0.3-1
Source Version: 2.0.3-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-eae1f4aa-34cc-43d9-8287-b4e35240238b' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.6 MB]
Fetched 26.4 MB in 12s (2279 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libpdb-redo' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libpdb-redo.git
Please use:
git clone https://salsa.debian.org/med-team/libpdb-redo.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 842 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main libpdb-redo 2.0.3-1 (dsc) [2317 B]
Get:2 http://172.17.4.1/private bookworm-staging/main libpdb-redo 2.0.3-1 (tar) [835 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main libpdb-redo 2.0.3-1 (diff) [4912 B]
Fetched 842 kB in 0s (5812 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libpdb-redo-tpLZ5H/libpdb-redo-2.0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libpdb-redo-tpLZ5H' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-HuCTEI/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-HuCTEI/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-HuCTEI/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-HuCTEI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-HuCTEI/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-HuCTEI/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-HuCTEI/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-HuCTEI/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (4085 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 80 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-HuCTEI/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (51.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12559 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libcifpp-dev (>= 2.0.4), cmake, libnewuoa-dev, pkg-config, libgsl-dev, libboost-dev, libboost-iostreams-dev, libzeep-dev (>= 5.1.7), libclipper-dev, zlib1g-dev, libbz2-dev, libccp4-dev (>= 6.5.1-5)
Filtered Build-Depends: debhelper-compat (= 13), libcifpp-dev (>= 2.0.4), cmake, libnewuoa-dev, pkg-config, libgsl-dev, libboost-dev, libboost-iostreams-dev, libzeep-dev (>= 5.1.7), libclipper-dev, zlib1g-dev, libbz2-dev, libccp4-dev (>= 6.5.1-5)
dpkg-deb: building package 'sbuild-build-depends-libpdb-redo-dummy' in '/<<BUILDDIR>>/resolver-HuCTEI/apt_archive/sbuild-build-depends-libpdb-redo-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libpdb-redo-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-HuCTEI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-HuCTEI/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-HuCTEI/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-HuCTEI/apt_archive ./ Sources [588 B]
Get:5 copy:/<<BUILDDIR>>/resolver-HuCTEI/apt_archive ./ Packages [670 B]
Fetched 2591 B in 1s (3960 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libpdb-redo build dependencies (apt-based resolver)
-----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bzip2 cmake
cmake-data cpp-11 debhelper dh-autoreconf dh-elpa-helper
dh-strip-nondeterminism dwz emacsen-common fftw-dev fftw2 file g++-11 gcc-11
gcc-11-base gettext gettext-base groff-base icu-devtools intltool-debian
libarchive-zip-perl libarchive13 libasan6 libatomic1 libboost-date-time-dev
libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev
libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0
libboost-program-options-dev libboost-program-options1.74-dev
libboost-program-options1.74.0 libboost-regex1.74-dev libboost-regex1.74.0
libboost-serialization1.74-dev libboost-serialization1.74.0
libboost-system-dev libboost-system1.74-dev libboost-system1.74.0
libboost1.74-dev libbrotli1 libbsd0 libbz2-1.0 libbz2-dev libcc1-0
libccp4-data libccp4-dev libccp4c0 libccp4f0 libcifpp-data libcifpp-dev
libcifpp2 libclipper-dev libclipper2 libcurl3-gnutls libcurl4
libdebhelper-perl libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7
libexpat1 libfabric1 libfile-stripnondeterminism-perl libgcc-11-dev
libgcc-s1 libgfortran5 libglib2.0-0 libgomp1 libgsl-dev libgsl27
libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu-dev libicu67
libjsoncpp25 libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev
libncurses6 libncursesw6 libnewuoa-dev libnewuoa0 libnghttp2-14 libnl-3-200
libnl-route-3-200 libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libprocps8
libpsl5 librdmacm1 librhash0 librtmp1 libsigsegv2 libssh2-1 libstdc++-11-dev
libstdc++6 libsub-override-perl libtinfo6 libtool libubsan1 libuchardet0
libuv1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2
libxnvctrl0 libzeep-dev libzeep5.1 m4 man-db ocl-icd-libopencl1 pkg-config
po-debconf procps sfftw-dev sfftw2 zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc bzip2-doc cmake-doc ninja-build
cmake-format gcc-11-locales dh-make mpi-defaults-bin gcc-11-doc gettext-doc
libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.74-doc
libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev
libboost-context1.74-dev libboost-contract1.74-dev
libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev
libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev
libboost-numpy1.74-dev libboost-python1.74-dev libboost-random1.74-dev
libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
libclipper-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
icu-doc pciutils libstdc++-11-doc libtool-doc gfortran | fortran95-compiler
gcj-jdk libzeep-doc mrc m4-doc apparmor less www-browser opencl-icd
libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs ibverbs-providers libgpm2
publicsuffix libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz
emacsen-common fftw-dev fftw2 file gettext gettext-base groff-base
icu-devtools intltool-debian libarchive-zip-perl libarchive13
libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0
libboost-dev libboost-iostreams-dev libboost-iostreams1.74-dev
libboost-iostreams1.74.0 libboost-program-options-dev
libboost-program-options1.74-dev libboost-program-options1.74.0
libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev
libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev
libboost-system1.74.0 libboost1.74-dev libbrotli1 libbsd0 libbz2-dev
libccp4-data libccp4-dev libccp4c0 libccp4f0 libcifpp-data libcifpp-dev
libcifpp2 libclipper-dev libclipper2 libcurl3-gnutls libcurl4
libdebhelper-perl libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7
libexpat1 libfabric1 libfile-stripnondeterminism-perl libgfortran5
libglib2.0-0 libgsl-dev libgsl27 libgslcblas0 libhwloc-plugins libhwloc15
libibverbs1 libicu-dev libicu67 libjsoncpp25 libmagic-mgc libmagic1 libmd0
libmmdb2-0 libmmdb2-dev libncurses6 libnewuoa-dev libnewuoa0 libnghttp2-14
libnl-3-200 libnl-route-3-200 libopenmpi3 libpciaccess0 libpipeline1
libpmix2 libprocps8 libpsl5 librdmacm1 librhash0 librtmp1 libsigsegv2
libssh2-1 libsub-override-perl libtool libuchardet0 libuv1 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0
libzeep-dev libzeep5.1 m4 man-db ocl-icd-libopencl1 pkg-config po-debconf
procps sbuild-build-depends-libpdb-redo-dummy sfftw-dev sfftw2 zlib1g-dev
The following packages will be upgraded:
bzip2 cpp-11 g++-11 gcc-11 gcc-11-base libasan6 libatomic1 libbz2-1.0
libcc1-0 libgcc-11-dev libgcc-s1 libgomp1 libncursesw6 libstdc++-11-dev
libstdc++6 libtinfo6 libubsan1
17 upgraded, 119 newly installed, 0 to remove and 63 not upgraded.
Need to get 96.9 MB of archives.
After this operation, 30.9 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-HuCTEI/apt_archive ./ sbuild-build-depends-libpdb-redo-dummy 0.invalid.0 [964 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bzip2 armhf 1.0.8-5 [47.2 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libbz2-1.0 armhf 1.0.8-5 [43.1 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-14+rpi1 [37.9 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-14+rpi1 [88.0 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-14+rpi1 [8196 B]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-14+rpi1 [1947 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-14+rpi1 [798 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-14+rpi1 [207 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-14+rpi1 [467 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf g++-11 armhf 11.2.0-14+rpi1 [7912 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.2.0-14+rpi1 [1963 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.2.0-14+rpi1 [697 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf gcc-11 armhf 11.2.0-14+rpi1 [14.0 MB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf cpp-11 armhf 11.2.0-14+rpi1 [7073 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-14+rpi1 [36.2 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libtinfo6 armhf 6.3-2 [335 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libncursesw6 armhf 6.3-2 [105 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.3-1 [136 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-4 [1308 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3-2 [79.6 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-6 [60.6 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-6 [476 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libarchive13 armhf 3.5.2-1 [301 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.81.0-1 [318 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.3-3 [81.6 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libjsoncpp25 armhf 1.9.5-3 [66.6 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf librhash0 armhf 1.4.2-1 [141 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.43.0-1 [122 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf dh-elpa-helper all 2.0.10 [11.3 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf emacsen-common all 3.0.4 [19.3 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf cmake-data all 3.22.1-1 [1905 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf cmake armhf 3.22.1-1+b1 [3478 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-1 [126 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-1 [56.8 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libibverbs1 armhf 39.0-1 [53.6 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf librdmacm1 armhf 39.0-1 [60.4 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libfabric1 armhf 1.11.0-3 [310 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libhwloc15 armhf 2.7.0-2 [127 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.81.0-1 [315 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libpciaccess0 armhf 0.16-3 [51.2 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.5-1 [108 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libxnvctrl0 armhf 470.94-1 [26.1 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf ocl-icd-libopencl1 armhf 2.2.14-3 [39.9 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libhwloc-plugins armhf 2.7.0-2 [20.3 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libpmix2 armhf 4.1.1~rc6-1 [481 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libopenmpi3 armhf 4.1.2~rc1-5+rpi1+b1 [1776 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf fftw2 armhf 2.1.5-6 [184 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf fftw-dev armhf 2.1.5-6 [212 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-14 [9533 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libboost-date-time1.74.0 armhf 1.74.0-14 [242 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libboost-serialization1.74.0 armhf 1.74.0-14 [319 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libboost-serialization1.74-dev armhf 1.74.0-14 [387 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libboost-date-time1.74-dev armhf 1.74.0-14 [251 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libboost-date-time-dev armhf 1.74.0.3+b2 [4604 B]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b2 [4824 B]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libboost-regex1.74.0 armhf 1.74.0-14 [449 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libboost-regex1.74-dev armhf 1.74.0-14 [551 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libboost-iostreams1.74.0 armhf 1.74.0-14 [260 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libboost-iostreams1.74-dev armhf 1.74.0-14 [269 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libboost-iostreams-dev armhf 1.74.0.3+b2 [4588 B]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options1.74.0 armhf 1.74.0-14 [334 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options1.74-dev armhf 1.74.0-14 [373 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options-dev armhf 1.74.0.3+b2 [4616 B]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libboost-system1.74.0 armhf 1.74.0-14 [242 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libboost-system1.74-dev armhf 1.74.0-14 [243 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libboost-system-dev armhf 1.74.0.3+b2 [4740 B]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5 [26.8 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libccp4-data all 6.5.1-5 [61.6 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libccp4c0 armhf 6.5.1-5 [74.3 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-14+rpi1 [235 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libmmdb2-0 armhf 2.0.5-1 [264 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libccp4f0 armhf 6.5.1-5 [202 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libccp4-dev armhf 6.5.1-5 [42.8 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libcifpp-data all 2.0.4-8 [437 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libcifpp2 armhf 2.0.4-8 [786 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libcifpp-dev armhf 2.0.4-8 [74.4 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf sfftw2 armhf 2.1.5-6 [186 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libclipper2 armhf 2.1.20201109-1 [1069 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libmmdb2-dev armhf 2.0.5-1 [91.9 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf sfftw-dev armhf 2.1.5-6 [214 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libclipper-dev armhf 2.1.20201109-1 [82.6 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.3-1 [1209 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.7.1+dfsg-3 [81.4 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libgsl27 armhf 2.7.1+dfsg-3 [758 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libgsl-dev armhf 2.7.1+dfsg-3 [958 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libnewuoa0 armhf 0.1.1-2 [16.4 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libnewuoa-dev armhf 0.1.1-2 [4916 B]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libzeep5.1 armhf 5.1.7-1 [496 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libzeep-dev armhf 5.1.7-1 [78.8 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-11_11.2.0-14+rpi1 gcc-11_11.2.0-14+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-11-dev_11.2.0-14+rpi1 libstdc++6_11.2.0-14+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.12 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3.1 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.3-1 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-5 cmake_3.22.1-1+b1 cmake-data_3.22.1-1 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-14+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-elpa-helper_2.0.10 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 emacsen-common_3.0.4 fakeroot_1.25.3-1.1 fftw-dev_2.1.5-6 fftw2_2.1.5-6 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-14+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-14+rpi1 gcc-11-base_11.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.12 libarchive-zip-perl_1.68-1 libarchive13_3.5.2-1 libasan6_11.2.0-14+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-14+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-4 libboost-date-time-dev_1.74.0.3+b2 libboost-date-time1.74-dev_1.74.0-14 libboost-date-time1.74.0_1.74.0-14 libboost-dev_1.74.0.3+b2 libboost-iostreams-dev_1.74.0.3+b2 libboost-iostreams1.74-dev_1.74.0-14 libboost-iostreams1.74.0_1.74.0-14 libboost-program-options-dev_1.74.0.3+b2 libboost-program-options1.74-dev_1.74.0-14 libboost-program-options1.74.0_1.74.0-14 libboost-regex1.74-dev_1.74.0-14 libboost-regex1.74.0_1.74.0-14 libboost-serialization1.74-dev_1.74.0-14 libboost-serialization1.74.0_1.74.0-14 libboost-system-dev_1.74.0.3+b2 libboost-system1.74-dev_1.74.0-14 libboost-system1.74.0_1.74.0-14 libboost1.74-dev_1.74.0-14 libbrotli1_1.0.9-2+b1 libbsd0_0.11.5-1 libbz2-1.0_1.0.8-5 libbz2-dev_1.0.8-5 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-14+rpi1 libccp4-data_6.5.1-5 libccp4-dev_6.5.1-5 libccp4c0_6.5.1-5 libccp4f0_6.5.1-5 libcifpp-data_2.0.4-8 libcifpp-dev_2.0.4-8 libcifpp2_2.0.4-8 libclipper-dev_2.1.20201109-1 libclipper2_2.1.20201109-1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.26-1 libcrypt1_1:4.4.26-1 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.81.0-1 libcurl4_7.81.0-1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdpkg-perl_1.20.9+rpi1 libelf1_0.186-1 libevent-core-2.1-7_2.1.12-stable-1 libevent-pthreads-2.1-7_2.1.12-stable-1 libexpat1_2.4.3-3 libext2fs2_1.46.4-1 libfabric1_1.11.0-3 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.2.0-14+rpi1 libgcc-s1_11.2.0-14+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran5_11.2.0-14+rpi1 libglib2.0-0_2.70.3-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.2-2 libgomp1_11.2.0-14+rpi1 libgpg-error0_1.42-3 libgsl-dev_2.7.1+dfsg-3 libgsl27_2.7.1+dfsg-3 libgslcblas0_2.7.1+dfsg-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhwloc-plugins_2.7.0-2 libhwloc15_2.7.0-2 libibverbs1_39.0-1 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libjsoncpp25_1.9.5-3 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmmdb2-0_2.0.5-1 libmmdb2-dev_2.0.5-1 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libstdc++-11-dev_11.2.0-14+rpi1 libstdc++6_11.2.0-14+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.7-1+rpi1 libtasn1-6_4.18.0-4 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_249.7-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libuv1_1.43.0-1 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxml2_2.9.12+dfsg-5 libxnvctrl0_470.94-1 libxxhash0_0.8.0-2+rpi1 libzeep-dev_5.1.7-1 libzeep5.1_5.1.7-1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.16-1+rpi1 login_1:4.8.1-2 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.3-1 ncurses-bin_6.3-1 netbase_6.3 ocl-icd-libopencl1_2.2.14-3 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 procps_2:3.3.17-6 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libpdb-redo-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sfftw-dev_2.1.5-6 sfftw2_2.1.5-6 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.knUwwXu0/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb 3 18:13:56 2022 UTC
gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE
gpgv: issuer "maarten@hekkelman.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libpdb-redo_2.0.3-1.dsc
dpkg-source: info: extracting libpdb-redo in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libpdb-redo_2.0.3.orig.tar.gz
dpkg-source: info: unpacking libpdb-redo_2.0.3-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying backport-spacegroup-code.patch
dpkg-source: info: applying no-minimizer-yet.patch
dpkg-source: info: applying version.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-eae1f4aa-34cc-43d9-8287-b4e35240238b
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libpdb-redo
dpkg-buildpackage: info: source version 2.0.3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DBUILD_SHARED_LIBS=ON -DPDB_REDO_BUILD_TESTS=ON
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DBUILD_SHARED_LIBS=ON -DPDB_REDO_BUILD_TESTS=ON ..
-- The CXX compiler identification is GNU 11.2.0
-- The C compiler identification is GNU 11.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2")
Using resources not possible since mrc was not found
-- Looking for ccp4/ccp4_general.h - /usr/include
-- Found CCP4: /usr/lib/arm-linux-gnueabihf/libccp4c.so
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Looking for clipper/clipper.h - /usr/include
-- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-core.so
-- FFTW2 libraries - /usr/lib/libsfftw.so
-- - /usr/lib/libsrfftw.so
-- FFTW2 header directory - /usr/include
-- Performing Test _LINKING_WITH_CLIPPER_CORE
-- Performing Test _LINKING_WITH_CLIPPER_CORE - Success
-- Looking for clipper/clipper-ccp4.h - /usr/include
-- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so
-- Looking for clipper/clipper-contrib.h - /usr/include
-- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so
-- CCP4 include directory: /usr/include
-- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70.0") found components: system iostreams regex program_options
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found BZip2: /usr/lib/arm-linux-gnueabihf/libbz2.so (found version "1.0.8")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70.0") found components: system date_time regex
-- Looking for newuoa.h
-- Looking for newuoa.h - found
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/pdb-redo.dir/build.make CMakeFiles/pdb-redo.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/pdb-redo.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/pdb-redo.dir/build.make CMakeFiles/pdb-redo.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 8%] Building CXX object CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -MF CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -c /<<PKGBUILDDIR>>/src/AtomShape.cpp
[ 16%] Building CXX object CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -c /<<PKGBUILDDIR>>/src/DistanceMap.cpp
[ 33%] Building CXX object CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o
[ 33%] Building CXX object CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o -MF CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o -c /<<PKGBUILDDIR>>/src/MapMaker.cpp
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -MF CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -c /<<PKGBUILDDIR>>/src/ClipperWrapper.cpp
[ 41%] Building CXX object CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o -c /<<PKGBUILDDIR>>/src/Ramachandran.cpp
In file included from /usr/include/c++/11/vector:72,
from /usr/include/cif++/CifUtils.hpp:35,
from /<<PKGBUILDDIR>>/src/DistanceMap.cpp:30:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {clipper::RTop_orth}; _Tp = clipper::RTop_orth; _Alloc = std::allocator<clipper::RTop_orth>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::RTop_orth>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {clipper::RTop_orth}; _Tp = clipper::RTop_orth; _Alloc = std::allocator<clipper::RTop_orth>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<clipper::RTop_orth*, std::vector<clipper::RTop_orth> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o -MF CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o -c /<<PKGBUILDDIR>>/src/ResolutionCalculator.cpp
[ 58%] Building CXX object CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o -MF CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o -c /<<PKGBUILDDIR>>/src/SkipList.cpp
[ 66%] Building CXX object CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o -c /<<PKGBUILDDIR>>/src/Statistics.cpp
/<<PKGBUILDDIR>>/src/MapMaker.cpp: In member function ‘void pdb_redo::MapMaker<FTYPE>::fixMTZ() [with FTYPE = float]’:
/<<PKGBUILDDIR>>/src/MapMaker.cpp:1063:22: note: parameter passing for argument of type ‘clipper::datatypes::F_phi<float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1063 | auto mFo = mFbData[ih] - mFdData[ih];
| ^~~
[ 75%] Building CXX object CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o -c /<<PKGBUILDDIR>>/src/Symmetry-2.cpp
In file included from /usr/include/c++/11/bits/stl_algobase.h:64,
from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/istream:38,
from /usr/include/c++/11/fstream:38,
from /<<PKGBUILDDIR>>/src/Statistics.cpp:27:
/usr/include/c++/11/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type = double; typename std::decay<_Tp2>::type = double; typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type = double; typename std::decay<_Tp>::type = double]’:
/<<PKGBUILDDIR>>/src/Statistics.cpp:613:41: required from here
/usr/include/c++/11/bits/stl_pair.h:567:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
567 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /usr/include/cif++/CifUtils.hpp:35,
from /<<PKGBUILDDIR>>/src/Symmetry-2.cpp:30:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {clipper::Coord_orth}; _Tp = clipper::Coord_orth; _Alloc = std::allocator<clipper::Coord_orth>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::Coord_orth>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In function ‘clipper::Coord_orth pdb_redo::CalculateOffsetForCell(const mmcif::Structure&, const clipper::Spacegroup&, const clipper::Cell&)’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<clipper::Coord_orth*, std::vector<clipper::Coord_orth> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/bits/stl_algo.h:61,
from /usr/include/c++/11/functional:65,
from /usr/include/cif++/Cif++.hpp:32,
from /usr/include/cif++/Structure.hpp:32,
from /<<PKGBUILDDIR>>/src/Statistics.cpp:30:
/usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/11/functional:65,
from /usr/include/cif++/Cif++.hpp:32,
from /usr/include/cif++/Structure.hpp:32,
from /<<PKGBUILDDIR>>/src/Statistics.cpp:30:
/usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1819 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1925 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {clipper::RTop_orth}; _Tp = clipper::RTop_orth; _Alloc = std::allocator<clipper::RTop_orth>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::RTop_orth>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {clipper::RTop_orth}; _Tp = clipper::RTop_orth; _Alloc = std::allocator<clipper::RTop_orth>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<clipper::RTop_orth*, std::vector<clipper::RTop_orth> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /usr/include/c++/11/functional:62,
from /usr/include/cif++/Cif++.hpp:32,
from /usr/include/cif++/Structure.hpp:32,
from /<<PKGBUILDDIR>>/src/Statistics.cpp:30:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pdb_redo::ResidueStatistics}; _Tp = pdb_redo::ResidueStatistics; _Alloc = std::allocator<pdb_redo::ResidueStatistics>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<pdb_redo::ResidueStatistics>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const clipper::Coord_grid&, double&}; _Tp = pdb_redo::AtomGridData; _Alloc = std::allocator<pdb_redo::AtomGridData>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<pdb_redo::AtomGridData>::iterator’ changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/11/map:60,
from /usr/include/c++/11/regex:52,
from /usr/include/cif++/Cif++.hpp:36,
from /usr/include/cif++/Structure.hpp:32,
from /<<PKGBUILDDIR>>/src/Statistics.cpp:30:
/usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const clipper::Coord_grid&>, std::tuple<>}; _Key = clipper::Coord_grid; _Val = std::pair<const clipper::Coord_grid, double>; _KeyOfValue = std::_Select1st<std::pair<const clipper::Coord_grid, double> >; _Compare = pdb_redo::StatsCollector::cmpGPt; _Alloc = std::allocator<std::pair<const clipper::Coord_grid, double> >]’:
/usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree<clipper::Coord_grid, std::pair<const clipper::Coord_grid, double>, std::_Select1st<std::pair<const clipper::Coord_grid, double> >, pdb_redo::StatsCollector::cmpGPt, std::allocator<std::pair<const clipper::Coord_grid, double> > >::const_iterator’ changed in GCC 7.1
2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/map:61,
from /usr/include/c++/11/regex:52,
from /usr/include/cif++/Cif++.hpp:36,
from /usr/include/cif++/Structure.hpp:32,
from /<<PKGBUILDDIR>>/src/Statistics.cpp:30:
/usr/include/c++/11/bits/stl_map.h: In member function ‘void pdb_redo::StatsCollector::sumDensity(std::vector<pdb_redo::AtomData>&, pdb_redo::StatsCollector::GridPtDataMap&, std::map<std::__cxx11::basic_string<char>, std::vector<double> >&) const’:
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree<clipper::Coord_grid, std::pair<const clipper::Coord_grid, double>, std::_Select1st<std::pair<const clipper::Coord_grid, double> >, pdb_redo::StatsCollector::cmpGPt, std::allocator<std::pair<const clipper::Coord_grid, double> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /usr/include/c++/11/functional:62,
from /usr/include/cif++/Cif++.hpp:32,
from /usr/include/cif++/Structure.hpp:32,
from /<<PKGBUILDDIR>>/src/Statistics.cpp:30:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<pdb_redo::AtomGridData*, std::vector<pdb_redo::AtomGridData> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {mmcif::Atom&, float&}; _Tp = pdb_redo::AtomData; _Alloc = std::allocator<pdb_redo::AtomData>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<pdb_redo::AtomData>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {mmcif::Atom&, float&}; _Tp = pdb_redo::AtomData; _Alloc = std::allocator<pdb_redo::AtomData>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<pdb_redo::AtomData*, std::vector<pdb_redo::AtomData> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/functional:65,
from /usr/include/cif++/Cif++.hpp:32,
from /usr/include/cif++/Structure.hpp:32,
from /<<PKGBUILDDIR>>/src/Statistics.cpp:30:
/usr/include/c++/11/bits/stl_algo.h: In member function ‘void pdb_redo::StatsCollector::initialize()’:
/usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1954 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1955 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1956 | __comp);
| ~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1871 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /usr/include/c++/11/functional:62,
from /usr/include/cif++/Cif++.hpp:32,
from /usr/include/cif++/Structure.hpp:32,
from /<<PKGBUILDDIR>>/src/Statistics.cpp:30:
/usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector<pdb_redo::ResidueStatistics> pdb_redo::StatsCollector::collect(const std::vector<std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, pdb_redo::BoundingBox&, bool) const’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<pdb_redo::ResidueStatistics*, std::vector<pdb_redo::ResidueStatistics> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<pdb_redo::ResidueStatistics*, std::vector<pdb_redo::ResidueStatistics> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /usr/include/c++/11/functional:62,
from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/11/algorithm:74,
from /usr/include/c++/11/ext/slist:47,
from /usr/include/boost/algorithm/string/std/slist_traits.hpp:16,
from /usr/include/boost/algorithm/string/std_containers_traits.hpp:23,
from /usr/include/boost/algorithm/string.hpp:18,
from /<<PKGBUILDDIR>>/src/MapMaker.cpp:31:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/11/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from /usr/include/c++/11/functional:62,
from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/11/algorithm:74,
from /usr/include/c++/11/ext/slist:47,
from /usr/include/boost/algorithm/string/std/slist_traits.hpp:16,
from /usr/include/boost/algorithm/string/std_containers_traits.hpp:23,
from /usr/include/boost/algorithm/string.hpp:18,
from /<<PKGBUILDDIR>>/src/MapMaker.cpp:31:
/usr/include/c++/11/bits/stl_vector.h: In constructor ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’:
/usr/include/c++/11/bits/stl_vector.h:960:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/map:61,
from /usr/include/c++/11/regex:52,
from /usr/include/cif++/Cif++.hpp:36,
from /usr/include/cif++/Structure.hpp:32,
from /<<PKGBUILDDIR>>/src/Statistics.cpp:30:
/usr/include/c++/11/bits/stl_map.h: In member function ‘void pdb_redo::StatsCollector::collectSums(std::vector<pdb_redo::AtomData>&, pdb_redo::StatsCollector::GridPtDataMap&) const’:
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree<clipper::Coord_grid, std::pair<const clipper::Coord_grid, double>, std::_Select1st<std::pair<const clipper::Coord_grid, double> >, pdb_redo::StatsCollector::cmpGPt, std::allocator<std::pair<const clipper::Coord_grid, double> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /usr/include/c++/11/functional:62,
from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/11/algorithm:74,
from /usr/include/c++/11/ext/slist:47,
from /usr/include/boost/algorithm/string/std/slist_traits.hpp:16,
from /usr/include/boost/algorithm/string/std_containers_traits.hpp:23,
from /usr/include/boost/algorithm/string.hpp:18,
from /<<PKGBUILDDIR>>/src/MapMaker.cpp:31:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {clipper::Atom}; _Tp = clipper::Atom; _Alloc = std::allocator<clipper::Atom>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::Atom>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {clipper::Atom}; _Tp = clipper::Atom; _Alloc = std::allocator<clipper::Atom>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<clipper::Atom*, std::vector<clipper::Atom> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 83%] Linking CXX shared library libpdb-redo.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/pdb-redo.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpdb-redo.so.2 -o libpdb-redo.so.2.0.3 CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o /usr/lib/arm-linux-gnueabihf/libcifpp.so.2.0.3 /usr/lib/arm-linux-gnueabihf/libzeep.so.5.1.7 /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so /usr/lib/arm-linux-gnueabihf/libclipper-core.so /usr/lib/arm-linux-gnueabihf/libccp4c.so /usr/lib/arm-linux-gnueabihf/libnewuoa.so /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 -latomic -lpthread /usr/lib/arm-linux-gnueabihf/libboost_regex.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_date_time.so.1.74.0
/usr/bin/cmake -E cmake_symlink_library libpdb-redo.so.2.0.3 libpdb-redo.so.2 libpdb-redo.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 83%] Built target pdb-redo
make -f CMakeFiles/unit-test.dir/build.make CMakeFiles/unit-test.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/unit-test.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/unit-test.dir/build.make CMakeFiles/unit-test.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 91%] Building CXX object CMakeFiles/unit-test.dir/test/unit-test.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/unit-test.dir/test/unit-test.cpp.o -MF CMakeFiles/unit-test.dir/test/unit-test.cpp.o.d -o CMakeFiles/unit-test.dir/test/unit-test.cpp.o -c /<<PKGBUILDDIR>>/test/unit-test.cpp
In file included from /usr/include/c++/11/vector:72,
from /usr/include/c++/11/functional:62,
from /usr/include/boost/smart_ptr/detail/shared_count.hpp:37,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /usr/include/boost/test/execution_monitor.hpp:24,
from /usr/include/boost/test/impl/compiler_log_formatter.ipp:22,
from /usr/include/boost/test/included/unit_test.hpp:18,
from /<<PKGBUILDDIR>>/test/unit-test.cpp:28:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {TestResidue}; _Tp = TestResidue; _Alloc = std::allocator<TestResidue>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<TestResidue>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void stats_1::test_method()’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TestResidue*, std::vector<TestResidue> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[100%] Linking CXX executable unit-test
/usr/bin/cmake -E cmake_link_script CMakeFiles/unit-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now CMakeFiles/unit-test.dir/test/unit-test.cpp.o -o unit-test -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf libpdb-redo.so.2.0.3 /usr/lib/arm-linux-gnueabihf/libcifpp.so.2.0.3 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 -latomic /usr/lib/arm-linux-gnueabihf/libzeep.so.5.1.7 -lpthread /usr/lib/arm-linux-gnueabihf/libboost_regex.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_date_time.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so /usr/lib/arm-linux-gnueabihf/libclipper-core.so /usr/lib/arm-linux-gnueabihf/libccp4c.so /usr/lib/arm-linux-gnueabihf/libnewuoa.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target unit-test
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_test -a
cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j4
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Parse Config file:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Parse Config file:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Test project /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
Start 1: unit-test
1: Test command: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/unit-test "--" "/<<PKGBUILDDIR>>/test"
1: Test timeout computed to be: 1500
1: Running 7 test cases...
1: inconsistent mandatory value for _diffrn_refln.standard_code in dictionary
1: choosing N
1: Reading map from "/<<PKGBUILDDIR>>/test/../examples/1cbs_map.mtz"
1: with labels: FB: FWT,PHWT
1: with labels: FD: DELFWT,PHDELWT
1: with labels: FA: FAN,PHAN
1: with labels: FO: FP,SIGFP
1: with labels: FC: FC_ALL,PHIC_ALL
1: Read Xmaps with sampling rate: 1.5
1: stored resolution: 1.79991
1: calculated reshi = 1.80009 reslo = 7.99918
1: spacegroup: P 21 21 21
1: cell: Cell ( 45.65, 47.56, 77.61, 90, 90, 90)
1: grid: Nuvw = ( 80, 80, 132)
1: R-factor : 0.180853
1: Free R-factor : 0.184876
1: skipping water in bond map calculation
1: 1 N 1.07327
1: 2 C 1.07747
1: 3 C 1.06093
1: 4 O 1.03793
1: 5 C 1.08041
1: 6 C 1.0807
1: 7 C 1.09096
1: 8 N 1.02885
1: 9 C 1.01706
1: 10 C 0.98581
1: 11 O 0.949879
1: 12 C 1.03256
1: 13 C 1.04372
1: 14 O 1.00052
1: 15 N 1.05783
1: 16 N 0.957396
1: 17 C 0.95347
1: 18 C 0.952071
1: 19 O 0.926261
1: 20 C 0.938776
1: 21 C 0.947439
1: 22 C 0.940042
1: 23 C 0.958542
1: 24 C 0.92616
1: 25 C 0.946796
1: 26 C 0.935361
1: 27 N 0.930847
1: 28 C 0.943131
1: 29 C 0.93617
1: 30 O 0.911906
1: 31 C 0.96053
1: 32 O 0.961552
1: 33 N 0.92031
1: 34 C 0.939679
1: 35 C 0.942494
1: 36 O 0.909548
1: 37 N 0.924386
1: 38 C 0.941311
1: 39 C 0.93563
1: 40 O 0.919858
1: 41 C 0.955999
1: 42 C 0.996134
1: 43 O 0.982804
1: 44 N 1.00745
1: 45 N 0.911032
1: 46 C 0.923198
1: 47 C 0.930114
1: 48 O 0.90597
1: 49 C 0.917515
1: 50 C 0.917601
1: 51 C 0.919834
1: 52 C 0.914452
1: 53 N 0.915186
1: 54 C 0.92311
1: 55 C 0.909822
1: 56 C 0.915049
1: 57 C 0.914282
1: 58 C 0.901453
1: 59 N 0.916605
1: 60 C 0.945142
1: 61 C 0.937334
1: 62 O 0.91126
1: 63 C 0.973701
1: 64 C 0.999573
1: 65 C 1.0586
1: 66 C 1.08021
1: 67 N 1.09047
1: 68 N 0.907665
1: 69 C 0.918203
1: 70 C 0.916494
1: 71 O 0.898073
1: 72 C 0.938414
1: 73 C 0.940496
1: 74 C 0.938414
1: 75 C 0.958259
1: 76 N 0.899173
1: 77 C 0.913355
1: 78 C 0.921385
1: 79 O 0.906295
1: 80 C 0.935181
1: 81 C 0.937066
1: 82 C 0.933752
1: 83 C 0.95012
1: 84 N 0.902946
1: 85 C 0.92303
1: 86 C 0.928532
1: 87 O 0.908974
1: 88 C 0.918117
1: 89 C 0.950677
1: 90 C 0.960056
1: 91 N 0.963036
1: 92 C 1.00782
1: 93 N 0.993583
1: 94 N 0.978888
1: 95 N 0.91253
1: 96 C 0.922247
1: 97 C 0.928968
1: 98 O 0.908974
1: 99 C 0.925464
1: 100 O 0.925161
1: 101 N 0.902946
1: 102 C 0.930469
1: 103 C 0.925814
1: 104 O 0.890241
1: 105 C 0.930913
1: 106 C 0.97341
1: 107 C 1.0013
1: 108 O 0.97517
1: 109 O 0.980435
1: 110 N 0.912114
1: 111 C 0.919834
1: 112 C 0.912506
1: 113 O 0.887778
1: 114 C 0.911669
1: 115 C 0.928267
1: 116 O 0.91298
1: 117 N 0.893694
1: 118 N 0.900448
1: 119 C 0.925814
1: 120 C 0.926423
1: 121 O 0.899971
1: 122 C 0.933488
1: 123 C 0.937424
1: 124 C 0.959582
1: 125 C 0.944502
1: 126 C 0.960436
1: 127 C 0.945509
1: 128 C 0.960436
1: 129 N 0.930236
1: 130 C 0.953096
1: 131 C 0.946335
1: 132 O 0.930353
1: 133 C 0.97928
1: 134 C 1.02098
1: 135 C 1.05195
1: 136 O 1.04594
1: 137 O 1.05078
1: 138 N 0.934065
1: 139 C 0.96148
1: 140 C 0.960246
1: 141 O 0.922877
1: 142 C 0.988104
1: 143 C 1.03732
1: 144 C 1.06991
1: 145 O 1.03559
1: 146 O 1.07412
1: 147 N 0.92756
1: 148 C 0.928703
1: 149 C 0.927297
1: 150 O 0.903006
1: 151 C 0.931175
1: 152 C 0.943679
1: 153 C 0.963004
1: 154 C 0.953937
1: 155 N 0.926954
1: 156 C 0.941947
1: 157 C 0.952723
1: 158 O 0.910519
1: 159 C 0.948732
1: 160 C 0.936256
1: 161 C 0.956563
1: 162 C 0.944318
1: 163 N 0.955192
1: 164 C 0.984122
1: 165 C 0.981252
1: 166 O 0.955005
1: 167 C 1.01151
1: 168 C 1.06114
1: 169 C 1.09267
1: 170 C 1.12586
1: 171 N 1.13687
1: 172 N 0.962013
1: 173 C 0.96741
1: 174 C 0.972339
1: 175 O 0.937345
1: 176 C 0.971467
1: 177 C 0.990001
1: 178 C 0.972826
1: 179 N 0.956016
1: 180 C 0.967506
1: 181 C 0.975946
1: 182 O 0.962012
1: 183 C 0.961289
1: 184 C 0.963958
1: 185 C 0.958448
1: 186 C 0.969048
1: 187 N 0.970626
1: 188 C 0.988004
1: 189 C 0.995528
1: 190 O 0.982138
1: 191 N 0.958039
1: 192 C 0.96205
1: 193 C 0.972826
1: 194 O 0.941459
1: 195 C 0.950027
1: 196 C 0.922943
1: 197 C 0.943771
1: 198 N 0.962572
1: 199 C 0.993513
1: 200 C 0.997652
1: 201 O 0.971432
1: 202 C 1.00639
1: 203 C 1.02904
1: 204 O 1.00644
1: 205 N 1.02975
1: 206 N 0.988038
1: 207 C 1.00507
1: 208 C 0.998461
1: 209 O 0.974887
1: 210 C 1.01686
1: 211 C 1.02925
1: 212 C 1.02088
1: 213 N 0.990464
1: 214 C 1.00752
1: 215 C 1.00364
1: 216 O 0.973204
1: 217 C 1.03629
1: 218 C 1.08576
1: 219 S 1.11146
1: 220 C 1.12273
1: 221 N 0.973178
1: 222 C 0.983031
1: 223 C 0.986705
1: 224 O 0.948807
1: 225 C 0.979381
1: 226 C 0.985513
1: 227 C 0.967312
1: 228 C 0.955061
1: 229 N 0.967802
1: 230 C 0.998864
1: 231 C 1.00486
1: 232 O 0.970875
1: 233 C 1.00029
1: 234 C 1.02067
1: 235 C 1.04681
1: 236 N 1.07202
1: 237 C 1.08013
1: 238 N 1.07661
1: 239 N 1.08423
1: 240 N 0.99632
1: 241 C 1.02605
1: 242 C 1.01789
1: 243 O 1.00266
1: 244 C 1.0497
1: 245 C 1.08933
1: 246 C 1.12402
1: 247 C 1.14112
1: 248 N 1.15207
1: 249 N 0.985812
1: 250 C 0.983033
1: 251 C 0.975164
1: 252 O 0.947476
1: 253 C 0.984817
1: 254 C 1.0012
1: 255 C 0.977709
1: 256 C 0.989802
1: 257 N 0.947381
1: 258 C 0.954592
1: 259 C 0.949471
1: 260 O 0.91421
1: 261 C 0.952071
1: 262 N 0.936166
1: 263 C 0.962717
1: 264 C 0.964244
1: 265 O 0.941017
1: 266 C 0.960815
1: 267 C 0.980463
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1: 1007 N 0.961364
1: 1008 C 0.95506
1: 1009 C 0.945325
1: 1010 O 0.908156
1: 1011 C 0.954873
1: 1012 C 0.955811
1: 1013 C 0.966545
1: 1014 N 0.915942
1: 1015 C 0.917086
1: 1016 C 0.913516
1: 1017 O 0.900691
1: 1018 C 0.928526
1: 1019 C 0.925896
1: 1020 C 0.928703
1: 1021 N 0.902539
1: 1022 C 0.905826
1: 1023 C 0.906816
1: 1024 O 0.891722
1: 1025 C 0.902523
1: 1026 S 0.895237
1: 1027 N 0.895346
1: 1028 C 0.901535
1: 1029 C 0.903597
1: 1030 O 0.878746
1: 1031 C 0.906983
1: 1032 O 0.89227
1: 1033 C 0.915638
1: 1034 N 0.893219
1: 1035 C 0.915049
1: 1036 C 0.91133
1: 1037 O 0.900051
1: 1038 C 0.930469
1: 1039 C 0.972339
1: 1040 C 0.98611
1: 1041 N 0.940318
1: 1042 C 0.955811
1: 1043 N 0.950723
1: 1044 N 0.933369
1: 1045 N 0.891027
1: 1046 C 0.901453
1: 1047 C 0.901053
1: 1048 O 0.876721
1: 1049 C 0.904995
1: 1050 C 0.917086
1: 1051 C 0.905743
1: 1052 N 0.886203
1: 1053 C 0.891213
1: 1054 C 0.896739
1: 1055 O 0.865284
1: 1056 C 0.908562
1: 1057 C 0.924326
1: 1058 C 0.935271
1: 1059 C 0.936886
1: 1060 C 0.956751
1: 1061 C 0.949842
1: 1062 C 0.954967
1: 1063 O 0.971619
1: 1064 N 0.895744
1: 1065 C 0.920778
1: 1066 C 0.925727
1: 1067 O 0.902844
1: 1068 C 0.917945
1: 1069 C 0.927297
1: 1070 C 0.93599
1: 1071 N 0.917946
1: 1072 C 0.939679
1: 1073 C 0.946059
1: 1074 O 0.920447
1: 1075 C 0.948547
1: 1076 C 0.963385
1: 1077 C 0.978692
1: 1078 N 0.975645
1: 1079 C 1.02388
1: 1080 N 1.02286
1: 1081 N 1.01787
1: 1082 N 0.960624
1: 1083 C 0.995528
1: 1084 C 1.00303
1: 1085 O 0.96624
1: 1086 C 1.01008
1: 1087 C 1.07161
1: 1088 C 1.10875
1: 1089 O 1.11244
1: 1090 O 1.10618
1: 1091 O 1.00344
1: 1092 C 0.973995
1: 1093 C 0.976924
1: 1094 C 0.981449
1: 1095 C 0.96895
1: 1096 C 0.96501
1: 1097 C 0.967506
1: 1098 C 0.963385
1: 1099 C 0.947532
1: 1100 C 0.93977
1: 1101 C 0.926775
1: 1102 C 0.93581
1: 1103 C 0.937247
1: 1104 C 0.940132
1: 1105 C 0.947716
1: 1106 C 0.970982
1: 1107 C 0.975751
1: 1108 C 0.959677
1: 1109 C 0.953376
1: 1110 C 0.933756
1: 1111 C 0.933752
1: 1112 O 0.935088
1: 1113 O 0.917603
1: 1114 O 0.966797
1: 1115 O 0.930353
1: 1116 O 0.977705
1: 1117 O 0.941459
1: 1118 O 0.959547
1: 1119 O 0.960729
1: 1120 O 0.908728
1: 1121 O 1.00401
1: 1122 O 1.09987
1: 1123 O 0.940142
1: 1124 O 0.986887
1: 1125 O 1.02187
1: 1126 O 0.901236
1: 1127 O 1.05908
1: 1128 O 1.01434
1: 1129 O 0.985078
1: 1130 O 0.947648
1: 1131 O 0.971436
1: 1132 O 0.940407
1: 1133 O 1.04068
1: 1134 O 0.974233
1: 1135 O 0.907599
1: 1136 O 0.918777
1: 1137 O 0.921787
1: 1138 O 1.0116
1: 1139 O 1.02451
1: 1140 O 0.916195
1: 1141 O 1.16851
1: 1142 O 1.06215
1: 1143 O 1.13002
1: 1144 O 1.08718
1: 1145 O 1.07944
1: 1146 O 1.10196
1: 1147 O 1.0539
1: 1148 O 1.13138
1: 1149 O 1.07663
1: 1150 O 1.13783
1: 1151 O 1.01502
1: 1152 O 0.99272
1: 1153 O 1.05418
1: 1154 O 1.01806
1: 1155 O 1.14773
1: 1156 O 1.00082
1: 1157 O 0.994833
1: 1158 O 1.18155
1: 1159 O 0.994741
1: 1160 O 1.04028
1: 1161 O 1.06227
1: 1162 O 1.18741
1: 1163 O 1.18684
1: 1164 O 1.01365
1: 1165 O 1.00839
1: 1166 O 1.10304
1: 1167 O 1.05186
1: 1168 O 1.11466
1: 1169 O 1.1797
1: 1170 O 1.12676
1: 1171 O 1.04193
1: 1172 O 1.16338
1: 1173 O 1.02001
1: 1174 O 1.01903
1: 1175 O 1.02716
1: 1176 O 1.02707
1: 1177 O 1.06043
1: 1178 O 1.1673
1: 1179 O 1.06178
1: 1180 O 1.04622
1: 1181 O 1.01131
1: 1182 O 1.11928
1: 1183 O 1.1162
1: 1184 O 1.16926
1: 1185 O 1.15718
1: 1186 O 1.16384
1: 1187 O 1.12737
1: 1188 O 1.10618
1: 1189 O 1.01532
1: 1190 O 0.987271
1: 1191 O 1.05388
1: 1192 O 1.19834
1: 1193 O 1.21706
1: 1194 O 1.15144
1: 1195 O 1.19413
1: 1196 O 1.17286
1: 1197 O 1.13967
1: 1198 O 1.05622
1: 1199 O 1.07637
1: 1200 O 1.05321
1: 1201 O 1.06045
1: 1202 O 1.06759
1: 1203 O 1.10337
1: 1204 O 1.07042
1: 1205 O 1.03578
1: 1206 O 1.07165
1: 1207 O 1.01962
1: 1208 O 1.14131
1: 1209 O 1.10064
1: 1210 O 1.1191
1: 1211 O 1.08935
1: 1212 O 1.12555
1: 1213 O 1.08862
1:
1: Intercept & gradient before LS: -0.076201 (0.000425224) 0.1134 (0.00066587)
1:
1: Rescale SD(delta-rho) using Q-Q plot for asym A:
1: ======================================================
1: Input & updated SD(delta-rho): 0.123854 ; 0.137899
1:
1:
1: Intercept & gradient before LS: 0.112013 (0.00322152) -0.0975523 (0.00506053)
1:
1: Rescale SD(delta-rho) using Q-Q plot for asym B:
1: ======================================================
1: Input & updated SD(delta-rho): 0.123854 ; 0.111772
1:
1:
1: Intercept & gradient before LS: -0.038699 (0.00144741) -0.0997851 (0.00226694)
1:
1: Rescale SD(delta-rho) using Q-Q plot for asym C:
1: ======================================================
1: Input & updated SD(delta-rho): 0.123854 ; 0.111495
1:
1: median position of atoms: (18.242,21.389,27.986)
1: Calculating radii with B Factor 24.9788
1: Radius for atom with type N is 1.03582
1: Radius for atom with type C is 1.04896
1: Radius for atom with type O is 1.02401
1: Radius for atom with type S is 1.01993
1: 1 N 1.07327
1: 2 C 1.07747
1: 3 C 1.06093
1: 4 O 1.03793
1: 5 C 1.08041
1: 6 C 1.0807
1: 7 C 1.09096
1: 8 N 1.02885
1: 9 C 1.01706
1: 10 C 0.98581
1: 11 O 0.949879
1: 12 C 1.03256
1: 13 C 1.04372
1: 14 O 1.00052
1: 15 N 1.05783
1: 16 N 0.957396
1: 17 C 0.95347
1: 18 C 0.952071
1: 19 O 0.926261
1: 20 C 0.938776
1: 21 C 0.947439
1: 22 C 0.940042
1: 23 C 0.958542
1: 24 C 0.92616
1: 25 C 0.946796
1: 26 C 0.935361
1: 27 N 0.930847
1: 28 C 0.943131
1: 29 C 0.93617
1: 30 O 0.911906
1: 31 C 0.96053
1: 32 O 0.961552
1: 33 N 0.92031
1: 34 C 0.939679
1: 35 C 0.942494
1: 36 O 0.909548
1: 37 N 0.924386
1: 38 C 0.941311
1: 39 C 0.93563
1: 40 O 0.919858
1: 41 C 0.955999
1: 42 C 0.996134
1: 43 O 0.982804
1: 44 N 1.00745
1: 45 N 0.911032
1: 46 C 0.923198
1: 47 C 0.930114
1: 48 O 0.90597
1: 49 C 0.917515
1: 50 C 0.917601
1: 51 C 0.919834
1: 52 C 0.914452
1: 53 N 0.915186
1: 54 C 0.92311
1: 55 C 0.909822
1: 56 C 0.915049
1: 57 C 0.914282
1: 58 C 0.901453
1: 59 N 0.916605
1: 60 C 0.945142
1: 61 C 0.937334
1: 62 O 0.91126
1: 63 C 0.973701
1: 64 C 0.999573
1: 65 C 1.0586
1: 66 C 1.08021
1: 67 N 1.09047
1: 68 N 0.907665
1: 69 C 0.918203
1: 70 C 0.916494
1: 71 O 0.898073
1: 72 C 0.938414
1: 73 C 0.940496
1: 74 C 0.938414
1: 75 C 0.958259
1: 76 N 0.899173
1: 77 C 0.913355
1: 78 C 0.921385
1: 79 O 0.906295
1: 80 C 0.935181
1: 81 C 0.937066
1: 82 C 0.933752
1: 83 C 0.95012
1: 84 N 0.902946
1: 85 C 0.92303
1: 86 C 0.928532
1: 87 O 0.908974
1: 88 C 0.918117
1: 89 C 0.950677
1: 90 C 0.960056
1: 91 N 0.963036
1: 92 C 1.00782
1: 93 N 0.993583
1: 94 N 0.978888
1: 95 N 0.91253
1: 96 C 0.922247
1: 97 C 0.928968
1: 98 O 0.908974
1: 99 C 0.925464
1: 100 O 0.925161
1: 101 N 0.902946
1: 102 C 0.930469
1: 103 C 0.925814
1: 104 O 0.890241
1: 105 C 0.930913
1: 106 C 0.97341
1: 107 C 1.0013
1: 108 O 0.97517
1: 109 O 0.980435
1: 110 N 0.912114
1: 111 C 0.919834
1: 112 C 0.912506
1: 113 O 0.887778
1: 114 C 0.911669
1: 115 C 0.928267
1: 116 O 0.91298
1: 117 N 0.893694
1: 118 N 0.900448
1: 119 C 0.925814
1: 120 C 0.926423
1: 121 O 0.899971
1: 122 C 0.933488
1: 123 C 0.937424
1: 124 C 0.959582
1: 125 C 0.944502
1: 126 C 0.960436
1: 127 C 0.945509
1: 128 C 0.960436
1: 129 N 0.930236
1: 130 C 0.953096
1: 131 C 0.946335
1: 132 O 0.930353
1: 133 C 0.97928
1: 134 C 1.02098
1: 135 C 1.05195
1: 136 O 1.04594
1: 137 O 1.05078
1: 138 N 0.934065
1: 139 C 0.96148
1: 140 C 0.960246
1: 141 O 0.922877
1: 142 C 0.988104
1: 143 C 1.03732
1: 144 C 1.06991
1: 145 O 1.03559
1: 146 O 1.07412
1: 147 N 0.92756
1: 148 C 0.928703
1: 149 C 0.927297
1: 150 O 0.903006
1: 151 C 0.931175
1: 152 C 0.943679
1: 153 C 0.963004
1: 154 C 0.953937
1: 155 N 0.926954
1: 156 C 0.941947
1: 157 C 0.952723
1: 158 O 0.910519
1: 159 C 0.948732
1: 160 C 0.936256
1: 161 C 0.956563
1: 162 C 0.944318
1: 163 N 0.955192
1: 164 C 0.984122
1: 165 C 0.981252
1: 166 O 0.955005
1: 167 C 1.01151
1: 168 C 1.06114
1: 169 C 1.09267
1: 170 C 1.12586
1: 171 N 1.13687
1: 172 N 0.962013
1: 173 C 0.96741
1: 174 C 0.972339
1: 175 O 0.937345
1: 176 C 0.971467
1: 177 C 0.990001
1: 178 C 0.972826
1: 179 N 0.956016
1: 180 C 0.967506
1: 181 C 0.975946
1: 182 O 0.962012
1: 183 C 0.961289
1: 184 C 0.963958
1: 185 C 0.958448
1: 186 C 0.969048
1: 187 N 0.970626
1: 188 C 0.988004
1: 189 C 0.995528
1: 190 O 0.982138
1: 191 N 0.958039
1: 192 C 0.96205
1: 193 C 0.972826
1: 194 O 0.941459
1: 195 C 0.950027
1: 196 C 0.922943
1: 197 C 0.943771
1: 198 N 0.962572
1: 199 C 0.993513
1: 200 C 0.997652
1: 201 O 0.971432
1: 202 C 1.00639
1: 203 C 1.02904
1: 204 O 1.00644
1: 205 N 1.02975
1: 206 N 0.988038
1: 207 C 1.00507
1: 208 C 0.998461
1: 209 O 0.974887
1: 210 C 1.01686
1: 211 C 1.02925
1: 212 C 1.02088
1: 213 N 0.990464
1: 214 C 1.00752
1: 215 C 1.00364
1: 216 O 0.973204
1: 217 C 1.03629
1: 218 C 1.08576
1: 219 S 1.11146
1: 220 C 1.12273
1: 221 N 0.973178
1: 222 C 0.983031
1: 223 C 0.986705
1: 224 O 0.948807
1: 225 C 0.979381
1: 226 C 0.985513
1: 227 C 0.967312
1: 228 C 0.955061
1: 229 N 0.967802
1: 230 C 0.998864
1: 231 C 1.00486
1: 232 O 0.970875
1: 233 C 1.00029
1: 234 C 1.02067
1: 235 C 1.04681
1: 236 N 1.07202
1: 237 C 1.08013
1: 238 N 1.07661
1: 239 N 1.08423
1: 240 N 0.99632
1: 241 C 1.02605
1: 242 C 1.01789
1: 243 O 1.00266
1: 244 C 1.0497
1: 245 C 1.08933
1: 246 C 1.12402
1: 247 C 1.14112
1: 248 N 1.15207
1: 249 N 0.985812
1: 250 C 0.983033
1: 251 C 0.975164
1: 252 O 0.947476
1: 253 C 0.984817
1: 254 C 1.0012
1: 255 C 0.977709
1: 256 C 0.989802
1: 257 N 0.947381
1: 258 C 0.954592
1: 259 C 0.949471
1: 260 O 0.91421
1: 261 C 0.952071
1: 262 N 0.936166
1: 263 C 0.962717
1: 264 C 0.964244
1: 265 O 0.941017
1: 266 C 0.960815
1: 267 C 0.980463
1: 268 C 0.971758
1: 269 N 0.957577
1: 270 C 0.971661
1: 271 C 0.976729
1: 272 O 0.960729
1: 273 C 0.980758
1: 274 N 0.94585
1: 275 C 0.956845
1: 276 C 0.955811
1: 277 O 0.927792
1: 278 C 0.949749
1: 279 N 0.932062
1: 280 C 0.953563
1: 281 C 0.959488
1: 282 O 0.936477
1: 283 C 0.947072
1: 284 N 0.950905
1: 285 C 0.979479
1: 286 C 0.983527
1: 287 O 0.972927
1: 288 C 0.987204
1: 289 O 0.998982
1: 290 N 0.97441
1: 291 C 0.998357
1: 292 C 0.979182
1: 293 O 0.961373
1: 294 C 1.04145
1: 295 C 1.09287
1: 296 C 1.13091
1: 297 C 1.14587
1: 298 N 1.1375
1: 299 N 0.948464
1: 300 C 0.947624
1: 301 C 0.949102
1: 302 O 0.926261
1: 303 C 0.927914
1: 304 C 0.935541
1: 305 C 0.939679
1: 306 N 0.932931
1: 307 C 0.947347
1: 308 C 0.934733
1: 309 O 0.913394
1: 310 C 0.94386
1: 311 N 0.926781
1: 312 C 0.932328
1: 313 C 0.945877
1: 314 O 0.920689
1: 315 C 0.938327
1: 316 C 0.943496
1: 317 C 0.943222
1: 318 N 0.928418
1: 319 C 0.951792
1: 320 C 0.944043
1: 321 O 0.913726
1: 322 C 0.981944
1: 323 C 1.0399
1: 324 C 1.07091
1: 325 O 1.06043
1: 326 O 1.0801
1: 327 N 0.925409
1: 328 C 0.938508
1: 329 C 0.941402
1: 330 O 0.916445
1: 331 C 0.936706
1: 332 C 0.936616
1: 333 C 0.93572
1: 334 C 0.925288
1: 335 N 0.938544
1: 336 C 0.964052
1: 337 C 0.965584
1: 338 O 0.941459
1: 339 C 0.984518
1: 340 C 1.03329
1: 341 C 1.07874
1: 342 C 1.09713
1: 343 N 1.10602
1: 344 N 0.964712
1: 345 C 0.98007
1: 346 C 0.992309
1: 347 O 0.964767
1: 348 C 0.976141
1: 349 C 0.961384
1: 350 C 0.977415
1: 351 O 0.977516
1: 352 N 0.973083
1: 353 N 0.986586
1: 354 C 1.02067
1: 355 C 1.00364
1: 356 O 0.986983
1: 357 C 1.05992
1: 358 C 1.13767
1: 359 C 1.16876
1: 360 O 1.15662
1: 361 O 1.15734
1: 362 N 0.985522
1: 363 C 1.00303
1: 364 C 0.997649
1: 365 O 0.971432
1: 366 N 0.972419
1: 367 C 0.986705
1: 368 C 0.979185
1: 369 O 0.944276
1: 370 C 1.00323
1: 371 C 1.02243
1: 372 O 1.01297
1: 373 O 1.02441
1: 374 N 0.95009
1: 375 C 0.962907
1: 376 C 0.958165
1: 377 O 0.929491
1: 378 C 0.980758
1: 379 O 0.970594
1: 380 C 0.981055
1: 381 N 0.938196
1: 382 C 0.9395
1: 383 C 0.936076
1: 384 O 0.909466
1: 385 C 0.939138
1: 386 C 0.957504
1: 387 C 0.948362
1: 388 C 0.966928
1: 389 C 0.953937
1: 390 C 0.969241
1: 391 C 0.957693
1: 392 N 0.924042
1: 393 C 0.940496
1: 394 C 0.931798
1: 395 O 0.908483
1: 396 C 0.95319
1: 397 C 0.955811
1: 398 C 0.978496
1: 399 C 0.964722
1: 400 C 0.983925
1: 401 C 0.969048
1: 402 C 0.984422
1: 403 O 0.967443
1: 404 N 0.925582
1: 405 C 0.925896
1: 406 C 0.921725
1: 407 O 0.913796
1: 408 C 0.924938
1: 409 C 0.926423
1: 410 C 0.93617
1: 411 C 0.918375
1: 412 N 0.910617
1: 413 C 0.93038
1: 414 C 0.922936
1: 415 O 0.892113
1: 416 C 0.937694
1: 417 C 0.965872
1: 418 C 1.01315
1: 419 C 1.06337
1: 420 N 1.06641
1: 421 N 0.9098
1: 422 C 0.917344
1: 423 C 0.919316
1: 424 O 0.898232
1: 425 C 0.919999
1: 426 O 0.909876
1: 427 C 0.894085
1: 428 N 0.911781
1: 429 C 0.936976
1: 430 C 0.927215
1: 431 O 0.902522
1: 432 C 0.957128
1: 433 O 1.01005
1: 434 N 0.912519
1: 435 C 0.917945
1: 436 C 0.918289
1: 437 O 0.889094
1: 438 C 0.907567
1: 439 O 0.908319
1: 440 C 0.915638
1: 441 N 0.914934
1: 442 C 0.921385
1: 443 C 0.913601
1: 444 O 0.905741
1: 445 C 0.92616
1: 446 O 0.905822
1: 447 C 0.944593
1: 448 N 0.906445
1: 449 C 0.925896
1: 450 C 0.922768
1: 451 O 0.887547
1: 452 C 0.932684
1: 453 C 0.941493
1: 454 C 0.928532
1: 455 N 0.912686
1: 456 C 0.932595
1: 457 C 0.93411
1: 458 O 0.910931
1: 459 C 0.957316
1: 460 C 0.98611
1: 461 C 1.0012
1: 462 N 1.0029
1: 463 C 1.03349
1: 464 N 1.01758
1: 465 N 1.02605
1: 466 N 0.93076
1: 467 C 0.947347
1: 468 C 0.946519
1: 469 O 0.938222
1: 470 C 0.93402
1: 471 O 0.914293
1: 472 C 0.940857
1: 473 N 0.93485
1: 474 C 0.944958
1: 475 C 0.93986
1: 476 O 0.907435
1: 477 C 0.95375
1: 478 O 0.941548
1: 479 C 0.965488
1: 480 N 0.937663
1: 481 C 0.95553
1: 482 C 0.950212
1: 483 O 0.940142
1: 484 C 0.981055
1: 485 C 1.03898
1: 486 C 1.0853
1: 487 O 1.0743
1: 488 O 1.08881
1: 489 N 0.924558
1: 490 C 0.940947
1: 491 C 0.945509
1: 492 O 0.904121
1: 493 C 0.942948
1: 494 C 0.937694
1: 495 C 0.945693
1: 496 C 0.959488
1: 497 N 0.937575
1: 498 C 0.970497
1: 499 C 0.958637
1: 500 O 0.935088
1: 501 C 0.986609
1: 502 C 1.01789
1: 503 O 1.00849
1: 504 N 1.01489
1: 505 N 0.943521
1: 506 C 0.953563
1: 507 C 0.956939
1: 508 O 0.929156
1: 509 C 0.943222
1: 510 C 0.951234
1: 511 C 0.935451
1: 512 C 0.942676
1: 513 C 0.940766
1: 514 C 0.946151
1: 515 C 0.950119
1: 516 N 0.945399
1: 517 C 0.959583
1: 518 C 0.950028
1: 519 O 0.932323
1: 520 C 0.985117
1: 521 C 1.04609
1: 522 C 1.07518
1: 523 C 1.10131
1: 524 N 1.09083
1: 525 N 0.935202
1: 526 C 0.940314
1: 527 C 0.948362
1: 528 O 0.93709
1: 529 C 0.933663
1: 530 C 0.940587
1: 531 C 0.934737
1: 532 N 0.919715
1: 533 C 0.927826
1: 534 C 0.937694
1: 535 O 0.92482
1: 536 N 0.929801
1: 537 C 0.953657
1: 538 C 0.957128
1: 539 O 0.926688
1: 540 C 0.950119
1: 541 C 0.991104
1: 542 C 1.01882
1: 543 O 0.997242
1: 544 O 1.01248
1: 545 N 0.956108
1: 546 C 0.978396
1: 547 C 0.962145
1: 548 O 0.937959
1: 549 C 1.0109
1: 550 C 1.073
1: 551 C 1.10539
1: 552 O 1.10177
1: 553 O 1.10168
1: 554 N 0.942809
1: 555 C 0.95142
1: 556 C 0.956187
1: 557 O 0.929501
1: 558 C 0.93322
1: 559 C 0.936796
1: 560 C 0.932595
1: 561 C 0.927473
1: 562 C 0.931091
1: 563 C 0.929234
1: 564 C 0.921211
1: 565 N 0.96007
1: 566 C 0.989201
1: 567 C 0.976143
1: 568 O 0.956997
1: 569 C 1.02656
1: 570 C 1.09163
1: 571 C 1.11934
1: 572 O 1.10267
1: 573 O 1.12315
1: 574 N 0.947829
1: 575 C 0.963385
1: 576 C 0.961955
1: 577 O 0.937696
1: 578 C 0.953563
1: 579 C 0.937243
1: 580 C 0.924763
1: 581 O 0.927534
1: 582 O 0.91298
1: 583 N 0.945044
1: 584 C 0.957787
1: 585 C 0.955342
1: 586 O 0.934226
1: 587 C 0.97928
1: 588 C 1.00854
1: 589 C 1.01861
1: 590 O 1.0044
1: 591 N 1.02915
1: 592 N 0.928766
1: 593 C 0.947255
1: 594 C 0.942768
1: 595 O 0.909876
1: 596 C 0.947992
1: 597 O 0.935263
1: 598 C 0.958637
1: 599 N 0.950272
1: 600 C 0.967408
1: 601 C 0.956187
1: 602 O 0.938565
1: 603 C 0.975459
1: 604 C 0.993513
1: 605 C 1.0109
1: 606 N 0.949549
1: 607 C 0.967986
1: 608 C 0.973993
1: 609 O 0.947476
1: 610 C 0.976927
1: 611 C 0.979185
1: 612 O 0.945337
1: 613 O 0.969576
1: 614 N 0.961089
1: 615 C 0.979182
1: 616 C 0.986807
1: 617 O 0.981571
1: 618 N 0.973368
1: 619 C 0.996134
1: 620 C 0.984221
1: 621 O 0.960184
1: 622 C 1.01675
1: 623 C 1.05585
1: 624 C 1.08421
1: 625 N 1.10478
1: 626 C 1.12717
1: 627 N 1.12637
1: 628 N 1.11217
1: 629 N 0.967335
1: 630 C 0.975751
1: 631 C 0.966064
1: 632 O 0.94481
1: 633 C 0.975849
1: 634 C 0.996941
1: 635 C 0.988303
1: 636 N 0.948373
1: 637 C 0.951885
1: 638 C 0.952723
1: 639 O 0.923386
1: 640 C 0.945417
1: 641 S 0.926222
1: 642 N 0.950905
1: 643 C 0.967312
1: 644 C 0.96053
1: 645 O 0.930612
1: 646 C 0.998357
1: 647 C 1.05676
1: 648 C 1.09401
1: 649 C 1.12389
1: 650 N 1.12597
1: 651 N 0.930062
1: 652 C 0.933752
1: 653 C 0.942038
1: 654 O 0.911837
1: 655 C 0.935361
1: 656 O 0.921533
1: 657 N 0.930236
1: 658 C 0.947347
1: 659 C 0.936256
1: 660 O 0.919185
1: 661 C 0.959867
1: 662 C 0.977809
1: 663 C 0.987306
1: 664 C 1.0014
1: 665 N 0.918199
1: 666 C 0.929145
1: 667 C 0.931091
1: 668 O 0.904768
1: 669 C 0.924326
1: 670 C 0.919057
1: 671 C 0.921298
1: 672 N 0.920896
1: 673 C 0.948086
1: 674 C 0.947716
1: 675 O 0.917687
1: 676 C 0.951792
1: 677 C 0.980068
1: 678 C 1.0215
1: 679 C 1.03567
1: 680 N 1.06126
1: 681 N 0.926954
1: 682 C 0.929411
1: 683 C 0.932243
1: 684 O 0.923714
1: 685 C 0.923372
1: 686 C 0.924245
1: 687 C 0.923721
1: 688 C 0.92862
1: 689 N 0.906199
1: 690 C 0.939588
1: 691 C 0.929848
1: 692 C 0.944318
1: 693 C 0.938595
1: 694 C 0.94698
1: 695 N 0.920821
1: 696 C 0.943131
1: 697 C 0.946703
1: 698 O 0.931207
1: 699 C 0.960435
1: 700 C 1.00069
1: 701 C 1.03773
1: 702 O 1.03569
1: 703 O 1.03579
1: 704 N 0.932668
1: 705 C 0.941676
1: 706 C 0.941855
1: 707 O 0.90963
1: 708 C 0.952071
1: 709 O 0.943483
1: 710 N 0.922509
1: 711 C 0.939407
1: 712 C 0.931976
1: 713 O 0.912402
1: 714 C 0.948086
1: 715 C 0.984023
1: 716 C 1.00936
1: 717 O 0.995414
1: 718 O 1.00849
1: 719 N 0.912114
1: 720 C 0.936976
1: 721 C 0.930647
1: 722 O 0.888552
1: 723 C 0.966832
1: 724 C 0.993213
1: 725 O 0.99301
1: 726 N 0.993485
1: 727 N 0.910712
1: 728 C 0.924419
1: 729 C 0.922247
1: 730 O 0.902281
1: 731 C 0.925984
1: 732 C 0.948177
1: 733 C 0.964626
1: 734 C 0.982439
1: 735 N 0.97803
1: 736 N 0.902864
1: 737 C 0.919143
1: 738 C 0.926687
1: 739 O 0.893192
1: 740 C 0.930558
1: 741 C 0.957787
1: 742 S 0.962171
1: 743 C 0.999674
1: 744 N 0.917364
1: 745 C 0.929588
1: 746 C 0.933752
1: 747 O 0.906133
1: 748 C 0.94122
1: 749 C 0.95553
1: 750 C 0.964244
1: 751 N 0.917449
1: 752 C 0.923895
1: 753 C 0.946243
1: 754 O 0.927534
1: 755 C 0.923634
1: 756 S 0.911661
1: 757 N 0.927993
1: 758 C 0.9704
1: 759 C 0.963003
1: 760 O 0.931294
1: 761 C 1.01254
1: 762 C 1.10345
1: 763 C 1.1477
1: 764 O 1.14756
1: 765 O 1.14463
1: 766 N 0.947381
1: 767 C 0.96072
1: 768 C 0.978986
1: 769 O 0.957819
1: 770 C 0.950119
1: 771 C 0.953003
1: 772 C 0.965777
1: 773 O 0.93241
1: 774 N 0.957761
1: 775 N 0.97736
1: 776 C 1.00936
1: 777 C 0.999778
1: 778 O 0.968737
1: 779 C 1.03618
1: 780 C 1.09257
1: 781 C 1.13542
1: 782 C 1.1527
1: 783 N 1.15755
1: 784 N 0.993094
1: 785 C 1.02109
1: 786 C 1.03287
1: 787 O 1.01219
1: 788 C 1.02698
1: 789 C 1.03184
1: 790 C 1.03432
1: 791 C 1.03856
1: 792 N 1.02935
1: 793 C 1.06841
1: 794 C 1.09257
1: 795 O 1.07072
1: 796 C 1.05288
1: 797 C 1.04753
1: 798 C 1.06093
1: 799 C 1.04753
1: 800 N 1.10531
1: 801 C 1.14004
1: 802 C 1.13729
1: 803 O 1.11185
1: 804 C 1.15823
1: 805 C 1.18655
1: 806 C 1.20721
1: 807 C 1.22275
1: 808 N 1.20972
1: 809 N 1.12314
1: 810 C 1.13339
1: 811 C 1.13042
1: 812 O 1.10181
1: 813 N 1.1132
1: 814 C 1.12444
1: 815 C 1.09954
1: 816 O 1.07271
1: 817 C 1.15038
1: 818 C 1.18915
1: 819 C 1.21663
1: 820 O 1.21081
1: 821 O 1.20551
1: 822 N 1.06535
1: 823 C 1.05216
1: 824 C 1.02698
1: 825 O 1.00072
1: 826 N 0.994364
1: 827 C 0.994923
1: 828 C 0.976924
1: 829 O 0.94375
1: 830 C 1.00221
1: 831 C 1.0014
1: 832 C 0.998562
1: 833 N 0.96752
1: 834 C 0.987204
1: 835 C 0.975946
1: 836 O 0.946409
1: 837 C 1.01861
1: 838 C 1.07131
1: 839 C 1.10884
1: 840 C 1.12246
1: 841 N 1.09953
1: 842 N 0.951361
1: 843 C 0.949749
1: 844 C 0.946061
1: 845 O 0.914626
1: 846 C 0.951513
1: 847 O 0.928135
1: 848 C 0.95347
1: 849 N 0.922604
1: 850 C 0.932863
1: 851 C 0.932332
1: 852 O 0.898694
1: 853 C 0.931798
1: 854 O 0.939622
1: 855 N 0.905789
1: 856 C 0.916408
1: 857 C 0.914111
1: 858 O 0.896169
1: 859 C 0.919488
1: 860 C 0.918117
1: 861 C 0.927385
1: 862 C 0.927649
1: 863 N 0.918962
1: 864 C 0.925639
1: 865 C 0.932328
1: 866 C 0.930913
1: 867 C 0.934912
1: 868 C 0.933841
1: 869 N 0.901499
1: 870 C 0.903834
1: 871 C 0.91293
1: 872 O 0.883574
1: 873 C 0.911162
1: 874 O 0.89141
1: 875 C 0.907066
1: 876 N 0.896462
1: 877 C 0.904165
1: 878 C 0.916751
1: 879 O 0.897835
1: 880 C 0.903586
1: 881 C 0.91276
1: 882 C 0.92303
1: 883 N 0.91997
1: 884 C 0.934733
1: 885 N 0.928167
1: 886 N 0.933282
1: 887 N 0.903353
1: 888 C 0.935451
1: 889 C 0.932417
1: 890 O 0.894607
1: 891 C 0.964722
1: 892 C 1.01377
1: 893 C 1.04969
1: 894 O 1.00431
1: 895 O 1.02501
1: 896 N 0.913354
1: 897 C 0.949009
1: 898 C 0.949194
1: 899 O 0.925919
1: 900 C 0.967312
1: 901 C 0.991304
1: 902 C 1.00803
1: 903 C 0.998968
1: 904 N 0.929461
1: 905 C 0.946611
1: 906 C 0.943952
1: 907 O 0.92128
1: 908 C 0.955623
1: 909 O 0.951941
1: 910 C 0.970111
1: 911 N 0.946121
1: 912 C 0.981449
1: 913 C 0.96616
1: 914 O 0.94623
1: 915 C 1.02553
1: 916 C 1.08421
1: 917 O 1.09551
1: 918 N 1.09341
1: 919 N 0.93705
1: 920 C 0.948547
1: 921 C 0.944318
1: 922 O 0.92702
1: 923 C 0.963385
1: 924 C 0.984518
1: 925 O 0.983749
1: 926 O 0.987558
1: 927 N 0.925668
1: 928 C 0.931708
1: 929 C 0.932773
1: 930 O 0.913643
1: 931 N 0.916943
1: 932 C 0.915895
1: 933 C 0.914452
1: 934 O 0.895633
1: 935 C 0.924245
1: 936 C 0.930203
1: 937 C 0.959582
1: 938 O 0.924565
1: 939 O 0.960368
1: 940 N 0.902783
1: 941 C 0.909402
1: 942 C 0.919834
1: 943 O 0.896882
1: 944 C 0.916237
1: 945 C 0.929499
1: 946 C 0.94122
1: 947 C 0.95291
1: 948 N 0.892271
1: 949 C 0.903751
1: 950 C 0.913524
1: 951 O 0.884415
1: 952 C 0.91133
1: 953 C 0.919574
1: 954 C 0.906232
1: 955 C 0.928002
1: 956 N 0.89417
1: 957 C 0.904
1: 958 C 0.913015
1: 959 O 0.880384
1: 960 C 0.912676
1: 961 C 0.917172
1: 962 C 0.916922
1: 963 C 0.917172
1: 964 N 0.896382
1: 965 C 0.91598
1: 966 C 0.921986
1: 967 O 0.889404
1: 968 C 0.913686
1: 969 O 0.904687
1: 970 C 0.916494
1: 971 N 0.905052
1: 972 C 0.927039
1: 973 C 0.922681
1: 974 O 0.895949
1: 975 C 0.928179
1: 976 C 0.947071
1: 977 S 0.955057
1: 978 C 0.96501
1: 979 N 0.899964
1: 980 C 0.929499
1: 981 C 0.933931
1: 982 O 0.906702
1: 983 C 0.938776
1: 984 O 0.925151
1: 985 C 0.946061
1: 986 N 0.929461
1: 987 C 0.945785
1: 988 C 0.960056
1: 989 O 0.933704
1: 990 C 0.957787
1: 991 N 0.956842
1: 992 C 0.994321
1: 993 C 1.00059
1: 994 O 0.981666
1: 995 C 0.998562
1: 996 C 1.02894
1: 997 O 1.01082
1: 998 O 1.01913
1: 999 N 0.999557
1: 1000 C 1.02294
1: 1001 C 1.00211
1: 1002 O 0.991475
1: 1003 C 1.06012
1: 1004 C 1.10865
1: 1005 O 1.10407
1: 1006 O 1.11954
1: 1007 N 0.961364
1: 1008 C 0.95506
1: 1009 C 0.945325
1: 1010 O 0.908156
1: 1011 C 0.954873
1: 1012 C 0.955811
1: 1013 C 0.966545
1: 1014 N 0.915942
1: 1015 C 0.917086
1: 1016 C 0.913516
1: 1017 O 0.900691
1: 1018 C 0.928526
1: 1019 C 0.925896
1: 1020 C 0.928703
1: 1021 N 0.902539
1: 1022 C 0.905826
1: 1023 C 0.906816
1: 1024 O 0.891722
1: 1025 C 0.902523
1: 1026 S 0.895237
1: 1027 N 0.895346
1: 1028 C 0.901535
1: 1029 C 0.903597
1: 1030 O 0.878746
1: 1031 C 0.906983
1: 1032 O 0.89227
1: 1033 C 0.915638
1: 1034 N 0.893219
1: 1035 C 0.915049
1: 1036 C 0.91133
1: 1037 O 0.900051
1: 1038 C 0.930469
1: 1039 C 0.972339
1: 1040 C 0.98611
1: 1041 N 0.940318
1: 1042 C 0.955811
1: 1043 N 0.950723
1: 1044 N 0.933369
1: 1045 N 0.891027
1: 1046 C 0.901453
1: 1047 C 0.901053
1: 1048 O 0.876721
1: 1049 C 0.904995
1: 1050 C 0.917086
1: 1051 C 0.905743
1: 1052 N 0.886203
1: 1053 C 0.891213
1: 1054 C 0.896739
1: 1055 O 0.865284
1: 1056 C 0.908562
1: 1057 C 0.924326
1: 1058 C 0.935271
1: 1059 C 0.936886
1: 1060 C 0.956751
1: 1061 C 0.949842
1: 1062 C 0.954967
1: 1063 O 0.971619
1: 1064 N 0.895744
1: 1065 C 0.920778
1: 1066 C 0.925727
1: 1067 O 0.902844
1: 1068 C 0.917945
1: 1069 C 0.927297
1: 1070 C 0.93599
1: 1071 N 0.917946
1: 1072 C 0.939679
1: 1073 C 0.946059
1: 1074 O 0.920447
1: 1075 C 0.948547
1: 1076 C 0.963385
1: 1077 C 0.978692
1: 1078 N 0.975645
1: 1079 C 1.02388
1: 1080 N 1.02286
1: 1081 N 1.01787
1: 1082 N 0.960624
1: 1083 C 0.995528
1: 1084 C 1.00303
1: 1085 O 0.96624
1: 1086 C 1.01008
1: 1087 C 1.07161
1: 1088 C 1.10875
1: 1089 O 1.11244
1: 1090 O 1.10618
1: 1091 O 1.00344
1: 1092 C 0.973995
1: 1093 C 0.976924
1: 1094 C 0.981449
1: 1095 C 0.96895
1: 1096 C 0.96501
1: 1097 C 0.967506
1: 1098 C 0.963385
1: 1099 C 0.947532
1: 1100 C 0.93977
1: 1101 C 0.926775
1: 1102 C 0.93581
1: 1103 C 0.937247
1: 1104 C 0.940132
1: 1105 C 0.947716
1: 1106 C 0.970982
1: 1107 C 0.975751
1: 1108 C 0.959677
1: 1109 C 0.953376
1: 1110 C 0.933756
1: 1111 C 0.933752
1: 1112 O 0.935088
1: 1113 O 0.917603
1: 1114 O 0.966797
1: 1115 O 0.930353
1: 1116 O 0.977705
1: 1117 O 0.941459
1: 1118 O 0.959547
1: 1119 O 0.960729
1: 1120 O 0.908728
1: 1121 O 1.00401
1: 1122 O 1.09987
1: 1123 O 0.940142
1: 1124 O 0.986887
1: 1125 O 1.02187
1: 1126 O 0.901236
1: 1127 O 1.05908
1: 1128 O 1.01434
1: 1129 O 0.985078
1: 1130 O 0.947648
1: 1131 O 0.971436
1: 1132 O 0.940407
1: 1133 O 1.04068
1: 1134 O 0.974233
1: 1135 O 0.907599
1: 1136 O 0.918777
1: 1137 O 0.921787
1: 1138 O 1.0116
1: 1139 O 1.02451
1: 1140 O 0.916195
1: 1141 O 1.16851
1: 1142 O 1.06215
1: 1143 O 1.13002
1: 1144 O 1.08718
1: 1145 O 1.07944
1: 1146 O 1.10196
1: 1147 O 1.0539
1: 1148 O 1.13138
1: 1149 O 1.07663
1: 1150 O 1.13783
1: 1151 O 1.01502
1: 1152 O 0.99272
1: 1153 O 1.05418
1: 1154 O 1.01806
1: 1155 O 1.14773
1: 1156 O 1.00082
1: 1157 O 0.994833
1: 1158 O 1.18155
1: 1159 O 0.994741
1: 1160 O 1.04028
1: 1161 O 1.06227
1: 1162 O 1.18741
1: 1163 O 1.18684
1: 1164 O 1.01365
1: 1165 O 1.00839
1: 1166 O 1.10304
1: 1167 O 1.05186
1: 1168 O 1.11466
1: 1169 O 1.1797
1: 1170 O 1.12676
1: 1171 O 1.04193
1: 1172 O 1.16338
1: 1173 O 1.02001
1: 1174 O 1.01903
1: 1175 O 1.02716
1: 1176 O 1.02707
1: 1177 O 1.06043
1: 1178 O 1.1673
1: 1179 O 1.06178
1: 1180 O 1.04622
1: 1181 O 1.01131
1: 1182 O 1.11928
1: 1183 O 1.1162
1: 1184 O 1.16926
1: 1185 O 1.15718
1: 1186 O 1.16384
1: 1187 O 1.12737
1: 1188 O 1.10618
1: 1189 O 1.01532
1: 1190 O 0.987271
1: 1191 O 1.05388
1: 1192 O 1.19834
1: 1193 O 1.21706
1: 1194 O 1.15144
1: 1195 O 1.19413
1: 1196 O 1.17286
1: 1197 O 1.13967
1: 1198 O 1.05622
1: 1199 O 1.07637
1: 1200 O 1.05321
1: 1201 O 1.06045
1: 1202 O 1.06759
1: 1203 O 1.10337
1: 1204 O 1.07042
1: 1205 O 1.03578
1: 1206 O 1.07165
1: 1207 O 1.01962
1: 1208 O 1.14131
1: 1209 O 1.10064
1: 1210 O 1.1191
1: 1211 O 1.08935
1: 1212 O 1.12555
1: 1213 O 1.08862
1: inconsistent mandatory value for _diffrn_refln.standard_code in dictionary
1: choosing N
1: Reading map from "/<<PKGBUILDDIR>>/test/../examples/1cbs_map.mtz"
1: with labels: FB: FWT,PHWT
1: with labels: FD: DELFWT,PHDELWT
1: with labels: FA: FAN,PHAN
1: with labels: FO: FP,SIGFP
1: with labels: FC: FC_ALL,PHIC_ALL
1: Read Xmaps with sampling rate: 0.75
1: stored resolution: 1.79991
1: calculated reshi = 1.80009 reslo = 7.99918
1: spacegroup: P 21 21 21
1: cell: Cell ( 45.65, 47.56, 77.61, 90, 90, 90)
1: grid: Nuvw = ( 40, 40, 72)
1: R-factor : 0.180853
1: Free R-factor : 0.184876
1: skipping water in bond map calculation
1: Missing compound bond info for U_K
1: 1 N 1.07327
1: 2 C 1.07747
1: 3 C 1.06093
1: 4 O 1.03793
1: 5 C 1.08041
1: 6 C 1.0807
1: 7 C 1.09096
1: 8 N 1.02885
1: 9 C 1.01706
1: 10 C 0.98581
1: 11 O 0.949879
1: 12 C 1.03256
1: 13 C 1.04372
1: 14 O 1.00052
1: 15 N 1.05783
1: 16 N 0.957396
1: 17 C 0.95347
1: 18 C 0.952071
1: 19 O 0.926261
1: 20 C 0.938776
1: 21 C 0.947439
1: 22 C 0.940042
1: 23 C 0.958542
1: 24 C 0.92616
1: 25 C 0.946796
1: 26 C 0.935361
1: 27 N 0.930847
1: 28 C 0.943131
1: 29 C 0.93617
1: 30 O 0.911906
1: 31 C 0.96053
1: 32 O 0.961552
1: 33 N 0.92031
1: 34 C 0.939679
1: 35 C 0.942494
1: 36 O 0.909548
1: 37 N 0.924386
1: 38 C 0.941311
1: 39 C 0.93563
1: 40 O 0.919858
1: 41 C 0.955999
1: 42 C 0.996134
1: 43 O 0.982804
1: 44 N 1.00745
1: 45 N 0.911032
1: 46 C 0.923198
1: 47 C 0.930114
1: 48 O 0.90597
1: 49 C 0.917515
1: 50 C 0.917601
1: 51 C 0.919834
1: 52 C 0.914452
1: 53 N 0.915186
1: 54 C 0.92311
1: 55 C 0.909822
1: 56 C 0.915049
1: 57 C 0.914282
1: 58 C 0.901453
1: 59 N 0.916605
1: 60 C 0.945142
1: 61 C 0.937334
1: 62 O 0.91126
1: 63 C 0.973701
1: 64 C 0.999573
1: 65 C 1.0586
1: 66 C 1.08021
1: 67 N 1.09047
1: 68 N 0.907665
1: 69 C 0.918203
1: 70 C 0.916494
1: 71 O 0.898073
1: 72 C 0.938414
1: 73 C 0.940496
1: 74 C 0.938414
1: 75 C 0.958259
1: 76 N 0.899173
1: 77 C 0.913355
1: 78 C 0.921385
1: 79 O 0.906295
1: 80 C 0.935181
1: 81 C 0.937066
1: 82 C 0.933752
1: 83 C 0.95012
1: 84 N 0.902946
1: 85 C 0.92303
1: 86 C 0.928532
1: 87 O 0.908974
1: 88 C 0.918117
1: 89 C 0.950677
1: 90 C 0.960056
1: 91 N 0.963036
1: 92 C 1.00782
1: 93 N 0.993583
1: 94 N 0.978888
1: 95 N 0.91253
1: 96 C 0.922247
1: 97 C 0.928968
1: 98 O 0.908974
1: 99 C 0.925464
1: 100 O 0.925161
1: 101 N 0.902946
1: 102 C 0.930469
1: 103 C 0.925814
1: 104 O 0.890241
1: 105 C 0.930913
1: 106 C 0.97341
1: 107 C 1.0013
1: 108 O 0.97517
1: 109 O 0.980435
1: 110 N 0.912114
1: 111 C 0.919834
1: 112 C 0.912506
1: 113 O 0.887778
1: 114 C 0.911669
1: 115 C 0.928267
1: 116 O 0.91298
1: 117 N 0.893694
1: 118 N 0.900448
1: 119 C 0.925814
1: 120 C 0.926423
1: 121 O 0.899971
1: 122 C 0.933488
1: 123 C 0.937424
1: 124 C 0.959582
1: 125 C 0.944502
1: 126 C 0.960436
1: 127 C 0.945509
1: 128 C 0.960436
1: 129 N 0.930236
1: 130 C 0.953096
1: 131 C 0.946335
1: 132 O 0.930353
1: 133 C 0.97928
1: 134 C 1.02098
1: 135 C 1.05195
1: 136 O 1.04594
1: 137 O 1.05078
1: 138 N 0.934065
1: 139 C 0.96148
1: 140 C 0.960246
1: 141 O 0.922877
1: 142 C 0.988104
1: 143 C 1.03732
1: 144 C 1.06991
1: 145 O 1.03559
1: 146 O 1.07412
1: 147 N 0.92756
1: 148 C 0.928703
1: 149 C 0.927297
1: 150 O 0.903006
1: 151 C 0.931175
1: 152 C 0.943679
1: 153 C 0.963004
1: 154 C 0.953937
1: 155 N 0.926954
1: 156 C 0.941947
1: 157 C 0.952723
1: 158 O 0.910519
1: 159 C 0.948732
1: 160 C 0.936256
1: 161 C 0.956563
1: 162 C 0.944318
1: 163 N 0.955192
1: 164 C 0.984122
1: 165 C 0.981252
1: 166 O 0.955005
1: 167 C 1.01151
1: 168 C 1.06114
1: 169 C 1.09267
1: 170 C 1.12586
1: 171 N 1.13687
1: 172 N 0.962013
1: 173 C 0.96741
1: 174 C 0.972339
1: 175 O 0.937345
1: 176 C 0.971467
1: 177 C 0.990001
1: 178 C 0.972826
1: 179 N 0.956016
1: 180 C 0.967506
1: 181 C 0.975946
1: 182 O 0.962012
1: 183 C 0.961289
1: 184 C 0.963958
1: 185 C 0.958448
1: 186 C 0.969048
1: 187 N 0.970626
1: 188 C 0.988004
1: 189 C 0.995528
1: 190 O 0.982138
1: 191 N 0.958039
1: 192 C 0.96205
1: 193 C 0.972826
1: 194 O 0.941459
1: 195 C 0.950027
1: 196 C 0.922943
1: 197 C 0.943771
1: 198 N 0.962572
1: 199 C 0.993513
1: 200 C 0.997652
1: 201 O 0.971432
1: 202 C 1.00639
1: 203 C 1.02904
1: 204 O 1.00644
1: 205 N 1.02975
1: 206 N 0.988038
1: 207 C 1.00507
1: 208 C 0.998461
1: 209 O 0.974887
1: 210 C 1.01686
1: 211 C 1.02925
1: 212 C 1.02088
1: 213 N 0.990464
1: 214 C 1.00752
1: 215 C 1.00364
1: 216 O 0.973204
1: 217 C 1.03629
1: 218 C 1.08576
1: 219 S 1.11146
1: 220 C 1.12273
1: 221 N 0.973178
1: 222 C 0.983031
1: 223 C 0.986705
1: 224 O 0.948807
1: 225 C 0.979381
1: 226 C 0.985513
1: 227 C 0.967312
1: 228 C 0.955061
1: 229 N 0.967802
1: 230 C 0.998864
1: 231 C 1.00486
1: 232 O 0.970875
1: 233 C 1.00029
1: 234 C 1.02067
1: 235 C 1.04681
1: 236 N 1.07202
1: 237 C 1.08013
1: 238 N 1.07661
1: 239 N 1.08423
1: 240 N 0.99632
1: 241 C 1.02605
1: 242 C 1.01789
1: 243 O 1.00266
1: 244 C 1.0497
1: 245 C 1.08933
1: 246 C 1.12402
1: 247 C 1.14112
1: 248 N 1.15207
1: 249 N 0.985812
1: 250 C 0.983033
1: 251 C 0.975164
1: 252 O 0.947476
1: 253 C 0.984817
1: 254 C 1.0012
1: 255 C 0.977709
1: 256 C 0.989802
1: 257 N 0.947381
1: 258 C 0.954592
1: 259 C 0.949471
1: 260 O 0.91421
1: 261 C 0.952071
1: 262 N 0.936166
1: 263 C 0.962717
1: 264 C 0.964244
1: 265 O 0.941017
1: 266 C 0.960815
1: 267 C 0.980463
1: 268 C 0.971758
1: 269 N 0.957577
1: 270 C 0.971661
1: 271 C 0.976729
1: 272 O 0.960729
1: 273 C 0.980758
1: 274 N 0.94585
1: 275 C 0.956845
1: 276 C 0.955811
1: 277 O 0.927792
1: 278 C 0.949749
1: 279 N 0.932062
1: 280 C 0.953563
1: 281 C 0.959488
1: 282 O 0.936477
1: 283 C 0.947072
1: 284 N 0.950905
1: 285 C 0.979479
1: 286 C 0.983527
1: 287 O 0.972927
1: 288 C 0.987204
1: 289 O 0.998982
1: 290 N 0.97441
1: 291 C 0.998357
1: 292 C 0.979182
1: 293 O 0.961373
1: 294 C 1.04145
1: 295 C 1.09287
1: 296 C 1.13091
1: 297 C 1.14587
1: 298 N 1.1375
1: 299 N 0.948464
1: 300 C 0.947624
1: 301 C 0.949102
1: 302 O 0.926261
1: 303 C 0.927914
1: 304 C 0.935541
1: 305 C 0.939679
1: 306 N 0.932931
1: 307 C 0.947347
1: 308 C 0.934733
1: 309 O 0.913394
1: 310 C 0.94386
1: 311 N 0.926781
1: 312 C 0.932328
1: 313 C 0.945877
1: 314 O 0.920689
1: 315 C 0.938327
1: 316 C 0.943496
1: 317 C 0.943222
1: 318 N 0.928418
1: 319 C 0.951792
1: 320 C 0.944043
1: 321 O 0.913726
1: 322 C 0.981944
1: 323 C 1.0399
1: 324 C 1.07091
1: 325 O 1.06043
1: 326 O 1.0801
1: 327 N 0.925409
1: 328 C 0.938508
1: 329 C 0.941402
1: 330 O 0.916445
1: 331 C 0.936706
1: 332 C 0.936616
1: 333 C 0.93572
1: 334 C 0.925288
1: 335 N 0.938544
1: 336 C 0.964052
1: 337 C 0.965584
1: 338 O 0.941459
1: 339 C 0.984518
1: 340 C 1.03329
1: 341 C 1.07874
1: 342 C 1.09713
1: 343 N 1.10602
1: 344 N 0.964712
1: 345 C 0.98007
1: 346 C 0.992309
1: 347 O 0.964767
1: 348 C 0.976141
1: 349 C 0.961384
1: 350 C 0.977415
1: 351 O 0.977516
1: 352 N 0.973083
1: 353 N 0.986586
1: 354 C 1.02067
1: 355 C 1.00364
1: 356 O 0.986983
1: 357 C 1.05992
1: 358 C 1.13767
1: 359 C 1.16876
1: 360 O 1.15662
1: 361 O 1.15734
1: 362 N 0.985522
1: 363 C 1.00303
1: 364 C 0.997649
1: 365 O 0.971432
1: 366 N 0.972419
1: 367 C 0.986705
1: 368 C 0.979185
1: 369 O 0.944276
1: 370 C 1.00323
1: 371 C 1.02243
1: 372 O 1.01297
1: 373 O 1.02441
1: 374 N 0.95009
1: 375 C 0.962907
1: 376 C 0.958165
1: 377 O 0.929491
1: 378 C 0.980758
1: 379 O 0.970594
1: 380 C 0.981055
1: 381 N 0.938196
1: 382 C 0.9395
1: 383 C 0.936076
1: 384 O 0.909466
1: 385 C 0.939138
1: 386 C 0.957504
1: 387 C 0.948362
1: 388 C 0.966928
1: 389 C 0.953937
1: 390 C 0.969241
1: 391 C 0.957693
1: 392 N 0.924042
1: 393 C 0.940496
1: 394 C 0.931798
1: 395 O 0.908483
1: 396 C 0.95319
1: 397 C 0.955811
1: 398 C 0.978496
1: 399 C 0.964722
1: 400 C 0.983925
1: 401 C 0.969048
1: 402 C 0.984422
1: 403 O 0.967443
1: 404 N 0.925582
1: 405 C 0.925896
1: 406 C 0.921725
1: 407 O 0.913796
1: 408 C 0.924938
1: 409 C 0.926423
1: 410 C 0.93617
1: 411 C 0.918375
1: 412 N 0.910617
1: 413 C 0.93038
1: 414 C 0.922936
1: 415 O 0.892113
1: 416 C 0.937694
1: 417 C 0.965872
1: 418 C 1.01315
1: 419 C 1.06337
1: 420 N 1.06641
1: 421 N 0.9098
1: 422 C 0.917344
1: 423 C 0.919316
1: 424 O 0.898232
1: 425 C 0.919999
1: 426 O 0.909876
1: 427 C 0.894085
1: 428 N 0.911781
1: 429 C 0.936976
1: 430 C 0.927215
1: 431 O 0.902522
1: 432 C 0.957128
1: 433 O 1.01005
1: 434 N 0.912519
1: 435 C 0.917945
1: 436 C 0.918289
1: 437 O 0.889094
1: 438 C 0.907567
1: 439 O 0.908319
1: 440 C 0.915638
1: 441 N 0.914934
1: 442 C 0.921385
1: 443 C 0.913601
1: 444 O 0.905741
1: 445 C 0.92616
1: 446 O 0.905822
1: 447 C 0.944593
1: 448 N 0.906445
1: 449 C 0.925896
1: 450 C 0.922768
1: 451 O 0.887547
1: 452 C 0.932684
1: 453 C 0.941493
1: 454 C 0.928532
1: 455 N 0.912686
1: 456 C 0.932595
1: 457 C 0.93411
1: 458 O 0.910931
1: 459 C 0.957316
1: 460 C 0.98611
1: 461 C 1.0012
1: 462 N 1.0029
1: 463 C 1.03349
1: 464 N 1.01758
1: 465 N 1.02605
1: 466 N 0.93076
1: 467 C 0.947347
1: 468 C 0.946519
1: 469 O 0.938222
1: 470 C 0.93402
1: 471 O 0.914293
1: 472 C 0.940857
1: 473 N 0.93485
1: 474 C 0.944958
1: 475 C 0.93986
1: 476 O 0.907435
1: 477 C 0.95375
1: 478 O 0.941548
1: 479 C 0.965488
1: 480 N 0.937663
1: 481 C 0.95553
1: 482 C 0.950212
1: 483 O 0.940142
1: 484 C 0.981055
1: 485 C 1.03898
1: 486 C 1.0853
1: 487 O 1.0743
1: 488 O 1.08881
1: 489 N 0.924558
1: 490 C 0.940947
1: 491 C 0.945509
1: 492 O 0.904121
1: 493 C 0.942948
1: 494 C 0.937694
1: 495 C 0.945693
1: 496 C 0.959488
1: 497 N 0.937575
1: 498 C 0.970497
1: 499 C 0.958637
1: 500 O 0.935088
1: 501 C 0.986609
1: 502 C 1.01789
1: 503 O 1.00849
1: 504 N 1.01489
1: 505 N 0.943521
1: 506 C 0.953563
1: 507 C 0.956939
1: 508 O 0.929156
1: 509 C 0.943222
1: 510 C 0.951234
1: 511 C 0.935451
1: 512 C 0.942676
1: 513 C 0.940766
1: 514 C 0.946151
1: 515 C 0.950119
1: 516 N 0.945399
1: 517 C 0.959583
1: 518 C 0.950028
1: 519 O 0.932323
1: 520 C 0.985117
1: 521 C 1.04609
1: 522 C 1.07518
1: 523 C 1.10131
1: 524 N 1.09083
1: 525 N 0.935202
1: 526 C 0.940314
1: 527 C 0.948362
1: 528 O 0.93709
1: 529 C 0.933663
1: 530 C 0.940587
1: 531 C 0.934737
1: 532 N 0.919715
1: 533 C 0.927826
1: 534 C 0.937694
1: 535 O 0.92482
1: 536 N 0.929801
1: 537 C 0.953657
1: 538 C 0.957128
1: 539 O 0.926688
1: 540 C 0.950119
1: 541 C 0.991104
1: 542 C 1.01882
1: 543 O 0.997242
1: 544 O 1.01248
1: 545 N 0.956108
1: 546 C 0.978396
1: 547 C 0.962145
1: 548 O 0.937959
1: 549 C 1.0109
1: 550 C 1.073
1: 551 C 1.10539
1: 552 O 1.10177
1: 553 O 1.10168
1: 554 N 0.942809
1: 555 C 0.95142
1: 556 C 0.956187
1: 557 O 0.929501
1: 558 C 0.93322
1: 559 C 0.936796
1: 560 C 0.932595
1: 561 C 0.927473
1: 562 C 0.931091
1: 563 C 0.929234
1: 564 C 0.921211
1: 565 N 0.96007
1: 566 C 0.989201
1: 567 C 0.976143
1: 568 O 0.956997
1: 569 C 1.02656
1: 570 C 1.09163
1: 571 C 1.11934
1: 572 O 1.10267
1: 573 O 1.12315
1: 574 N 0.947829
1: 575 C 0.963385
1: 576 C 0.961955
1: 577 O 0.937696
1: 578 C 0.953563
1: 579 C 0.937243
1: 580 C 0.924763
1: 581 O 0.927534
1: 582 O 0.91298
1: 583 N 0.945044
1: 584 C 0.957787
1: 585 C 0.955342
1: 586 O 0.934226
1: 587 C 0.97928
1: 588 C 1.00854
1: 589 C 1.01861
1: 590 O 1.0044
1: 591 N 1.02915
1: 592 N 0.928766
1: 593 C 0.947255
1: 594 C 0.942768
1: 595 O 0.909876
1: 596 C 0.947992
1: 597 O 0.935263
1: 598 C 0.958637
1: 599 N 0.950272
1: 600 C 0.967408
1: 601 C 0.956187
1: 602 O 0.938565
1: 603 C 0.975459
1: 604 C 0.993513
1: 605 C 1.0109
1: 606 N 0.949549
1: 607 C 0.967986
1: 608 C 0.973993
1: 609 O 0.947476
1: 610 C 0.976927
1: 611 C 0.979185
1: 612 O 0.945337
1: 613 O 0.969576
1: 614 N 0.961089
1: 615 C 0.979182
1: 616 C 0.986807
1: 617 O 0.981571
1: 618 N 0.973368
1: 619 C 0.996134
1: 620 C 0.984221
1: 621 O 0.960184
1: 622 C 1.01675
1: 623 C 1.05585
1: 624 C 1.08421
1: 625 N 1.10478
1: 626 C 1.12717
1: 627 N 1.12637
1: 628 N 1.11217
1: 629 N 0.967335
1: 630 C 0.975751
1: 631 C 0.966064
1: 632 O 0.94481
1: 633 C 0.975849
1: 634 C 0.996941
1: 635 C 0.988303
1: 636 N 0.948373
1: 637 C 0.951885
1: 638 C 0.952723
1: 639 O 0.923386
1: 640 C 0.945417
1: 641 S 0.926222
1: 642 N 0.950905
1: 643 C 0.967312
1: 644 C 0.96053
1: 645 O 0.930612
1: 646 C 0.998357
1: 647 C 1.05676
1: 648 C 1.09401
1: 649 C 1.12389
1: 650 N 1.12597
1: 651 N 0.930062
1: 652 C 0.933752
1: 653 C 0.942038
1: 654 O 0.911837
1: 655 C 0.935361
1: 656 O 0.921533
1: 657 N 0.930236
1: 658 C 0.947347
1: 659 C 0.936256
1: 660 O 0.919185
1: 661 C 0.959867
1: 662 C 0.977809
1: 663 C 0.987306
1: 664 C 1.0014
1: 665 N 0.918199
1: 666 C 0.929145
1: 667 C 0.931091
1: 668 O 0.904768
1: 669 C 0.924326
1: 670 C 0.919057
1: 671 C 0.921298
1: 672 N 0.920896
1: 673 C 0.948086
1: 674 C 0.947716
1: 675 O 0.917687
1: 676 C 0.951792
1: 677 C 0.980068
1: 678 C 1.0215
1: 679 C 1.03567
1: 680 N 1.06126
1: 681 N 0.926954
1: 682 C 0.929411
1: 683 C 0.932243
1: 684 O 0.923714
1: 685 C 0.923372
1: 686 C 0.924245
1: 687 C 0.923721
1: 688 C 0.92862
1: 689 N 0.906199
1: 690 C 0.939588
1: 691 C 0.929848
1: 692 C 0.944318
1: 693 C 0.938595
1: 694 C 0.94698
1: 695 N 0.920821
1: 696 C 0.943131
1: 697 C 0.946703
1: 698 O 0.931207
1: 699 C 0.960435
1: 700 C 1.00069
1: 701 C 1.03773
1: 702 O 1.03569
1: 703 O 1.03579
1: 704 N 0.932668
1: 705 C 0.941676
1: 706 C 0.941855
1: 707 O 0.90963
1: 708 C 0.952071
1: 709 O 0.943483
1: 710 N 0.922509
1: 711 C 0.939407
1: 712 C 0.931976
1: 713 O 0.912402
1: 714 C 0.948086
1: 715 C 0.984023
1: 716 C 1.00936
1: 717 O 0.995414
1: 718 O 1.00849
1: 719 N 0.912114
1: 720 C 0.936976
1: 721 C 0.930647
1: 722 O 0.888552
1: 723 C 0.966832
1: 724 C 0.993213
1: 725 O 0.99301
1: 726 N 0.993485
1: 727 N 0.910712
1: 728 C 0.924419
1: 729 C 0.922247
1: 730 O 0.902281
1: 731 C 0.925984
1: 732 C 0.948177
1: 733 C 0.964626
1: 734 C 0.982439
1: 735 N 0.97803
1: 736 N 0.902864
1: 737 C 0.919143
1: 738 C 0.926687
1: 739 O 0.893192
1: 740 C 0.930558
1: 741 C 0.957787
1: 742 S 0.962171
1: 743 C 0.999674
1: 744 N 0.917364
1: 745 C 0.929588
1: 746 C 0.933752
1: 747 O 0.906133
1: 748 C 0.94122
1: 749 C 0.95553
1: 750 C 0.964244
1: 751 N 0.917449
1: 752 C 0.923895
1: 753 C 0.946243
1: 754 O 0.927534
1: 755 C 0.923634
1: 756 S 0.911661
1: 757 N 0.927993
1: 758 C 0.9704
1: 759 C 0.963003
1: 760 O 0.931294
1: 761 C 1.01254
1: 762 C 1.10345
1: 763 C 1.1477
1: 764 O 1.14756
1: 765 O 1.14463
1: 766 N 0.947381
1: 767 C 0.96072
1: 768 C 0.978986
1: 769 O 0.957819
1: 770 C 0.950119
1: 771 C 0.953003
1: 772 C 0.965777
1: 773 O 0.93241
1: 774 N 0.957761
1: 775 N 0.97736
1: 776 C 1.00936
1: 777 C 0.999778
1: 778 O 0.968737
1: 779 C 1.03618
1: 780 C 1.09257
1: 781 C 1.13542
1: 782 C 1.1527
1: 783 N 1.15755
1: 784 N 0.993094
1: 785 C 1.02109
1: 786 C 1.03287
1: 787 O 1.01219
1: 788 C 1.02698
1: 789 C 1.03184
1: 790 C 1.03432
1: 791 C 1.03856
1: 792 N 1.02935
1: 793 C 1.06841
1: 794 C 1.09257
1: 795 O 1.07072
1: 796 C 1.05288
1: 797 C 1.04753
1: 798 C 1.06093
1: 799 C 1.04753
1: 800 N 1.10531
1: 801 C 1.14004
1: 802 C 1.13729
1: 803 O 1.11185
1: 804 C 1.15823
1: 805 C 1.18655
1: 806 C 1.20721
1: 807 C 1.22275
1: 808 N 1.20972
1: 809 N 1.12314
1: 810 C 1.13339
1: 811 C 1.13042
1: 812 O 1.10181
1: 813 N 1.1132
1: 814 C 1.12444
1: 815 C 1.09954
1: 816 O 1.07271
1: 817 C 1.15038
1: 818 C 1.18915
1: 819 C 1.21663
1: 820 O 1.21081
1: 821 O 1.20551
1: 822 N 1.06535
1: 823 C 1.05216
1: 824 C 1.02698
1: 825 O 1.00072
1: 826 N 0.994364
1: 827 C 0.994923
1: 828 C 0.976924
1: 829 O 0.94375
1: 830 C 1.00221
1: 831 C 1.0014
1: 832 C 0.998562
1: 833 N 0.96752
1: 834 C 0.987204
1: 835 C 0.975946
1: 836 O 0.946409
1: 837 C 1.01861
1: 838 C 1.07131
1: 839 C 1.10884
1: 840 C 1.12246
1: 841 N 1.09953
1: 842 N 0.951361
1: 843 C 0.949749
1: 844 C 0.946061
1: 845 O 0.914626
1: 846 C 0.951513
1: 847 O 0.928135
1: 848 C 0.95347
1: 849 N 0.922604
1: 850 C 0.932863
1: 851 C 0.932332
1: 852 O 0.898694
1: 853 C 0.931798
1: 854 O 0.939622
1: 855 N 0.905789
1: 856 C 0.916408
1: 857 C 0.914111
1: 858 O 0.896169
1: 859 C 0.919488
1: 860 C 0.918117
1: 861 C 0.927385
1: 862 C 0.927649
1: 863 N 0.918962
1: 864 C 0.925639
1: 865 C 0.932328
1: 866 C 0.930913
1: 867 C 0.934912
1: 868 C 0.933841
1: 869 N 0.901499
1: 870 C 0.903834
1: 871 C 0.91293
1: 872 O 0.883574
1: 873 C 0.911162
1: 874 O 0.89141
1: 875 C 0.907066
1: 876 N 0.896462
1: 877 C 0.904165
1: 878 C 0.916751
1: 879 O 0.897835
1: 880 C 0.903586
1: 881 C 0.91276
1: 882 C 0.92303
1: 883 N 0.91997
1: 884 C 0.934733
1: 885 N 0.928167
1: 886 N 0.933282
1: 887 N 0.903353
1: 888 C 0.935451
1: 889 C 0.932417
1: 890 O 0.894607
1: 891 C 0.964722
1: 892 C 1.01377
1: 893 C 1.04969
1: 894 O 1.00431
1: 895 O 1.02501
1: 896 N 0.913354
1: 897 C 0.949009
1: 898 C 0.949194
1: 899 O 0.925919
1: 900 C 0.967312
1: 901 C 0.991304
1: 902 C 1.00803
1: 903 C 0.998968
1: 904 N 0.929461
1: 905 C 0.946611
1: 906 C 0.943952
1: 907 O 0.92128
1: 908 C 0.955623
1: 909 O 0.951941
1: 910 C 0.970111
1: 911 N 0.946121
1: 912 C 0.981449
1: 913 C 0.96616
1: 914 O 0.94623
1: 915 C 1.02553
1: 916 C 1.08421
1: 917 O 1.09551
1: 918 N 1.09341
1: 919 N 0.93705
1: 920 C 0.948547
1: 921 C 0.944318
1: 922 O 0.92702
1: 923 C 0.963385
1: 924 C 0.984518
1: 925 O 0.983749
1: 926 O 0.987558
1: 927 N 0.925668
1: 928 C 0.931708
1: 929 C 0.932773
1: 930 O 0.913643
1: 931 N 0.916943
1: 932 C 0.915895
1: 933 C 0.914452
1: 934 O 0.895633
1: 935 C 0.924245
1: 936 C 0.930203
1: 937 C 0.959582
1: 938 O 0.924565
1: 939 O 0.960368
1: 940 N 0.902783
1: 941 C 0.909402
1: 942 C 0.919834
1: 943 O 0.896882
1: 944 C 0.916237
1: 945 C 0.929499
1: 946 C 0.94122
1: 947 C 0.95291
1: 948 N 0.892271
1: 949 C 0.903751
1: 950 C 0.913524
1: 951 O 0.884415
1: 952 C 0.91133
1: 953 C 0.919574
1: 954 C 0.906232
1: 955 C 0.928002
1: 956 N 0.89417
1: 957 C 0.904
1: 958 C 0.913015
1: 959 O 0.880384
1: 960 C 0.912676
1: 961 C 0.917172
1: 962 C 0.916922
1: 963 C 0.917172
1: 964 N 0.896382
1: 965 C 0.91598
1: 966 C 0.921986
1: 967 O 0.889404
1: 968 C 0.913686
1: 969 O 0.904687
1: 970 C 0.916494
1: 971 N 0.905052
1: 972 C 0.927039
1: 973 C 0.922681
1: 974 O 0.895949
1: 975 C 0.928179
1: 976 C 0.947071
1: 977 S 0.955057
1: 978 C 0.96501
1: 979 N 0.899964
1: 980 C 0.929499
1: 981 C 0.933931
1: 982 O 0.906702
1: 983 C 0.938776
1: 984 O 0.925151
1: 985 C 0.946061
1: 986 N 0.929461
1: 987 C 0.945785
1: 988 C 0.960056
1: 989 O 0.933704
1: 990 C 0.957787
1: 991 N 0.956842
1: 992 C 0.994321
1: 993 C 1.00059
1: 994 O 0.981666
1: 995 C 0.998562
1: 996 C 1.02894
1: 997 O 1.01082
1: 998 O 1.01913
1: 999 N 0.999557
1: 1000 C 1.02294
1: 1001 C 1.00211
1: 1002 O 0.991475
1: 1003 C 1.06012
1: 1004 C 1.10865
1: 1005 O 1.10407
1: 1006 O 1.11954
1: 1007 N 0.961364
1: 1008 C 0.95506
1: 1009 C 0.945325
1: 1010 O 0.908156
1: 1011 C 0.954873
1: 1012 C 0.955811
1: 1013 C 0.966545
1: 1014 N 0.915942
1: 1015 C 0.917086
1: 1016 C 0.913516
1: 1017 O 0.900691
1: 1018 C 0.928526
1: 1019 C 0.925896
1: 1020 C 0.928703
1: 1021 N 0.902539
1: 1022 C 0.905826
1: 1023 C 0.906816
1: 1024 O 0.891722
1: 1025 C 0.902523
1: 1026 S 0.895237
1: 1027 N 0.895346
1: 1028 C 0.901535
1: 1029 C 0.903597
1: 1030 O 0.878746
1: 1031 C 0.906983
1: 1032 O 0.89227
1: 1033 C 0.915638
1: 1034 N 0.893219
1: 1035 C 0.915049
1: 1036 C 0.91133
1: 1037 O 0.900051
1: 1038 C 0.930469
1: 1039 C 0.972339
1: 1040 C 0.98611
1: 1041 N 0.940318
1: 1042 C 0.955811
1: 1043 N 0.950723
1: 1044 N 0.933369
1: 1045 N 0.891027
1: 1046 C 0.901453
1: 1047 C 0.901053
1: 1048 O 0.876721
1: 1049 C 0.904995
1: 1050 C 0.917086
1: 1051 C 0.905743
1: 1052 N 0.886203
1: 1053 C 0.891213
1: 1054 C 0.896739
1: 1055 O 0.865284
1: 1056 C 0.908562
1: 1057 C 0.924326
1: 1058 C 0.935271
1: 1059 C 0.936886
1: 1060 C 0.956751
1: 1061 C 0.949842
1: 1062 C 0.954967
1: 1063 O 0.971619
1: 1064 N 0.895744
1: 1065 C 0.920778
1: 1066 C 0.925727
1: 1067 O 0.902844
1: 1068 C 0.917945
1: 1069 C 0.927297
1: 1070 C 0.93599
1: 1071 N 0.917946
1: 1072 C 0.939679
1: 1073 C 0.946059
1: 1074 O 0.920447
1: 1075 C 0.948547
1: 1076 C 0.963385
1: 1077 C 0.978692
1: 1078 N 0.975645
1: 1079 C 1.02388
1: 1080 N 1.02286
1: 1081 N 1.01787
1: 1082 N 0.960624
1: 1083 C 0.995528
1: 1084 C 1.00303
1: 1085 O 0.96624
1: 1086 C 1.01008
1: 1087 C 1.07161
1: 1088 C 1.10875
1: 1089 O 1.11244
1: 1090 O 1.10618
1: 1091 O 1.00344
1: 1092 C 0.973995
1: 1093 C 0.976924
1: 1094 C 0.981449
1: 1095 C 0.96895
1: 1096 C 0.96501
1: 1097 C 0.967506
1: 1098 C 0.963385
1: 1099 C 0.947532
1: 1100 C 0.93977
1: 1101 C 0.926775
1: 1102 C 0.93581
1: 1103 C 0.937247
1: 1104 C 0.940132
1: 1105 C 0.947716
1: 1106 C 0.970982
1: 1107 C 0.975751
1: 1108 C 0.959677
1: 1109 C 0.953376
1: 1110 C 0.933756
1: 1111 C 0.933752
1: 1112 O 0.935088
1: 1113 O 0.917603
1: 1114 O 0.966797
1: 1115 O 0.930353
1: 1116 O 0.977705
1: 1117 O 0.941459
1: 1118 O 0.959547
1: 1119 O 0.960729
1: 1120 O 0.908728
1: 1121 O 1.00401
1: 1122 O 1.09987
1: 1123 O 0.940142
1: 1124 O 0.986887
1: 1125 O 1.02187
1: 1126 O 0.901236
1: 1127 O 1.05908
1: 1128 O 1.01434
1: 1129 O 0.985078
1: 1130 O 0.947648
1: 1131 O 0.971436
1: 1132 O 0.940407
1: 1133 O 1.04068
1: 1134 O 0.974233
1: 1135 O 0.907599
1: 1136 O 0.918777
1: 1137 O 0.921787
1: 1138 O 1.0116
1: 1139 O 1.02451
1: 1140 O 0.916195
1: 1141 O 1.16851
1: 1142 O 1.06215
1: 1143 O 1.13002
1: 1144 O 1.08718
1: 1145 O 1.07944
1: 1146 O 1.10196
1: 1147 O 1.0539
1: 1148 O 1.13138
1: 1149 O 1.07663
1: 1150 O 1.13783
1: 1151 O 1.01502
1: 1152 O 0.99272
1: 1153 O 1.05418
1: 1154 O 1.01806
1: 1155 O 1.14773
1: 1156 O 1.00082
1: 1157 O 0.994833
1: 1158 O 1.18155
1: 1159 O 0.994741
1: 1160 O 1.04028
1: 1161 O 1.06227
1: 1162 O 1.18741
1: 1163 O 1.18684
1: 1164 O 1.01365
1: 1165 O 1.00839
1: 1166 O 1.10304
1: 1167 O 1.05186
1: 1168 O 1.11466
1: 1169 O 1.1797
1: 1170 O 1.12676
1: 1171 O 1.04193
1: 1172 O 1.16338
1: 1173 O 1.02001
1: 1174 O 1.01903
1: 1175 O 1.02716
1: 1176 O 1.02707
1: 1177 O 1.06043
1: 1178 O 1.1673
1: 1179 O 1.06178
1: 1180 O 1.04622
1: 1181 O 1.01131
1: 1182 O 1.11928
1: 1183 O 1.1162
1: 1184 O 1.16926
1: 1185 O 1.15718
1: 1186 O 1.16384
1: 1187 O 1.12737
1: 1188 O 1.10618
1: 1189 O 1.01532
1: 1190 O 0.987271
1: 1191 O 1.05388
1: 1192 O 1.19834
1: 1193 O 1.21706
1: 1194 O 1.15144
1: 1195 O 1.19413
1: 1196 O 1.17286
1: 1197 O 1.13967
1: 1198 O 1.05622
1: 1199 O 1.07637
1: 1200 O 1.05321
1: 1201 O 1.06045
1: 1202 O 1.06759
1: 1203 O 1.10337
1: 1204 O 1.07042
1: 1205 O 1.03578
1: 1206 O 1.07165
1: 1207 O 1.01962
1: 1208 O 1.14131
1: 1209 O 1.10064
1: 1210 O 1.1191
1: 1211 O 1.08935
1: 1212 O 1.12555
1: 1213 O 1.08862
1:
1: Intercept & gradient before LS: -0.0615663 (0.000573911) 0.0873704 (0.000898727)
1:
1: Rescale SD(delta-rho) using Q-Q plot for asym A:
1: ======================================================
1: Input & updated SD(delta-rho): 0.11509 ; 0.125146
1:
1:
1: Intercept & gradient before LS: 0.0679982 (0.0146148) -0.0420235 (0.0228119)
1:
1: Rescale SD(delta-rho) using Q-Q plot for asym B:
1: ======================================================
1: Input & updated SD(delta-rho): 0.11509 ; 0.110254
1:
1:
1: Intercept & gradient before LS: -0.00860157 (0.000800546) -0.185508 (0.00125356)
1:
1: Rescale SD(delta-rho) using Q-Q plot for asym C:
1: ======================================================
1: Input & updated SD(delta-rho): 0.11509 ; 0.09374
1:
1: median position of atoms: (18.242,21.389,27.986)
1: Calculating radii with B Factor 24.9788
1: Radius for atom with type N is 1.03582
1: Radius for atom with type C is 1.04896
1: Radius for atom with type O is 1.02401
1: Radius for atom with type S is 1.01993
1: 1 N 1.07327
1: 2 C 1.07747
1: 3 C 1.06093
1: 4 O 1.03793
1: 5 C 1.08041
1: 6 C 1.0807
1: 7 C 1.09096
1: 8 N 1.02885
1: 9 C 1.01706
1: 10 C 0.98581
1: 11 O 0.949879
1: 12 C 1.03256
1: 13 C 1.04372
1: 14 O 1.00052
1: 15 N 1.05783
1: 16 N 0.957396
1: 17 C 0.95347
1: 18 C 0.952071
1: 19 O 0.926261
1: 20 C 0.938776
1: 21 C 0.947439
1: 22 C 0.940042
1: 23 C 0.958542
1: 24 C 0.92616
1: 25 C 0.946796
1: 26 C 0.935361
1: 27 N 0.930847
1: 28 C 0.943131
1: 29 C 0.93617
1: 30 O 0.911906
1: 31 C 0.96053
1: 32 O 0.961552
1: 33 N 0.92031
1: 34 C 0.939679
1: 35 C 0.942494
1: 36 O 0.909548
1: 37 N 0.924386
1: 38 C 0.941311
1: 39 C 0.93563
1: 40 O 0.919858
1: 41 C 0.955999
1: 42 C 0.996134
1: 43 O 0.982804
1: 44 N 1.00745
1: 45 N 0.911032
1: 46 C 0.923198
1: 47 C 0.930114
1: 48 O 0.90597
1: 49 C 0.917515
1: 50 C 0.917601
1: 51 C 0.919834
1: 52 C 0.914452
1: 53 N 0.915186
1: 54 C 0.92311
1: 55 C 0.909822
1: 56 C 0.915049
1: 57 C 0.914282
1: 58 C 0.901453
1: 59 N 0.916605
1: 60 C 0.945142
1: 61 C 0.937334
1: 62 O 0.91126
1: 63 C 0.973701
1: 64 C 0.999573
1: 65 C 1.0586
1: 66 C 1.08021
1: 67 N 1.09047
1: 68 N 0.907665
1: 69 C 0.918203
1: 70 C 0.916494
1: 71 O 0.898073
1: 72 C 0.938414
1: 73 C 0.940496
1: 74 C 0.938414
1: 75 C 0.958259
1: 76 N 0.899173
1: 77 C 0.913355
1: 78 C 0.921385
1: 79 O 0.906295
1: 80 C 0.935181
1: 81 C 0.937066
1: 82 C 0.933752
1: 83 C 0.95012
1: 84 N 0.902946
1: 85 C 0.92303
1: 86 C 0.928532
1: 87 O 0.908974
1: 88 C 0.918117
1: 89 C 0.950677
1: 90 C 0.960056
1: 91 N 0.963036
1: 92 C 1.00782
1: 93 N 0.993583
1: 94 N 0.978888
1: 95 N 0.91253
1: 96 C 0.922247
1: 97 C 0.928968
1: 98 O 0.908974
1: 99 C 0.925464
1: 100 O 0.925161
1: 101 N 0.902946
1: 102 C 0.930469
1: 103 C 0.925814
1: 104 O 0.890241
1: 105 C 0.930913
1: 106 C 0.97341
1: 107 C 1.0013
1: 108 O 0.97517
1: 109 O 0.980435
1: 110 N 0.912114
1: 111 C 0.919834
1: 112 C 0.912506
1: 113 O 0.887778
1: 114 C 0.911669
1: 115 C 0.928267
1: 116 O 0.91298
1: 117 N 0.893694
1: 118 N 0.900448
1: 119 C 0.925814
1: 120 C 0.926423
1: 121 O 0.899971
1: 122 C 0.933488
1: 123 C 0.937424
1: 124 C 0.959582
1: 125 C 0.944502
1: 126 C 0.960436
1: 127 C 0.945509
1: 128 C 0.960436
1: 129 N 0.930236
1: 130 C 0.953096
1: 131 C 0.946335
1: 132 O 0.930353
1: 133 C 0.97928
1: 134 C 1.02098
1: 135 C 1.05195
1: 136 O 1.04594
1: 137 O 1.05078
1: 138 N 0.934065
1: 139 C 0.96148
1: 140 C 0.960246
1: 141 O 0.922877
1: 142 C 0.988104
1: 143 C 1.03732
1: 144 C 1.06991
1: 145 O 1.03559
1: 146 O 1.07412
1: 147 N 0.92756
1: 148 C 0.928703
1: 149 C 0.927297
1: 150 O 0.903006
1: 151 C 0.931175
1: 152 C 0.943679
1: 153 C 0.963004
1: 154 C 0.953937
1: 155 N 0.926954
1: 156 C 0.941947
1: 157 C 0.952723
1: 158 O 0.910519
1: 159 C 0.948732
1: 160 C 0.936256
1: 161 C 0.956563
1: 162 C 0.944318
1: 163 N 0.955192
1: 164 C 0.984122
1: 165 C 0.981252
1: 166 O 0.955005
1: 167 C 1.01151
1: 168 C 1.06114
1: 169 C 1.09267
1: 170 C 1.12586
1: 171 N 1.13687
1: 172 N 0.962013
1: 173 C 0.96741
1: 174 C 0.972339
1: 175 O 0.937345
1: 176 C 0.971467
1: 177 C 0.990001
1: 178 C 0.972826
1: 179 N 0.956016
1: 180 C 0.967506
1: 181 C 0.975946
1: 182 O 0.962012
1: 183 C 0.961289
1: 184 C 0.963958
1: 185 C 0.958448
1: 186 C 0.969048
1: 187 N 0.970626
1: 188 C 0.988004
1: 189 C 0.995528
1: 190 O 0.982138
1: 191 N 0.958039
1: 192 C 0.96205
1: 193 C 0.972826
1: 194 O 0.941459
1: 195 C 0.950027
1: 196 C 0.922943
1: 197 C 0.943771
1: 198 N 0.962572
1: 199 C 0.993513
1: 200 C 0.997652
1: 201 O 0.971432
1: 202 C 1.00639
1: 203 C 1.02904
1: 204 O 1.00644
1: 205 N 1.02975
1: 206 N 0.988038
1: 207 C 1.00507
1: 208 C 0.998461
1: 209 O 0.974887
1: 210 C 1.01686
1: 211 C 1.02925
1: 212 C 1.02088
1: 213 N 0.990464
1: 214 C 1.00752
1: 215 C 1.00364
1: 216 O 0.973204
1: 217 C 1.03629
1: 218 C 1.08576
1: 219 S 1.11146
1: 220 C 1.12273
1: 221 N 0.973178
1: 222 C 0.983031
1: 223 C 0.986705
1: 224 O 0.948807
1: 225 C 0.979381
1: 226 C 0.985513
1: 227 C 0.967312
1: 228 C 0.955061
1: 229 N 0.967802
1: 230 C 0.998864
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1: 1180 O 1.04622
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1: 1183 O 1.1162
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1: 1186 O 1.16384
1: 1187 O 1.12737
1: 1188 O 1.10618
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1: 1190 O 0.987271
1: 1191 O 1.05388
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1: 1193 O 1.21706
1: 1194 O 1.15144
1: 1195 O 1.19413
1: 1196 O 1.17286
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1: 1199 O 1.07637
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1: 1210 O 1.1191
1: 1211 O 1.08935
1: 1212 O 1.12555
1: 1213 O 1.08862
1: Missing information for compound 'U_K'
1: Missing bond information for compound U_K
1:
1: [1;32;49m*** No errors detected
1: [0;39;49m
1/1 Test #1: unit-test ........................ Passed 13.57 sec
100% tests passed, 0 tests failed out of 1
Total Test time (real) = 13.57 sec
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libpdb-redo.so.2.0.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libpdb-redo.so.2
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libpdb-redo.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoTargets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoTargets-none.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/AtomShape.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/ClipperWrapper.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/Compound.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/DistanceMap.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/MapMaker.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/Minimizer.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/Ramachandran.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/ResolutionCalculator.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/Restraints.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/SkipList.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/Statistics.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/Symmetry-2.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/pdb-redo_export.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoConfig.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoConfigVersion.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/libpdb-redo.pc
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libpdb-redo2/usr/lib/arm-linux-gnueabihf/libpdb-redo.so.2.0.3 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libpdb-redo-dev' in '../libpdb-redo-dev_2.0.3-1_armhf.deb'.
dpkg-deb: building package 'libpdb-redo2' in '../libpdb-redo2_2.0.3-1_armhf.deb'.
dpkg-deb: building package 'libpdb-redo2-dbgsym' in '../libpdb-redo2-dbgsym_2.0.3-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../libpdb-redo_2.0.3-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-02-06T05:31:08Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libpdb-redo_2.0.3-1_armhf.changes:
----------------------------------
Format: 1.8
Date: Thu, 03 Feb 2022 11:29:02 +0100
Source: libpdb-redo
Binary: libpdb-redo-dev libpdb-redo2 libpdb-redo2-dbgsym
Architecture: armhf
Version: 2.0.3-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Maarten L. Hekkelman <maarten@hekkelman.com>
Description:
libpdb-redo-dev - Development files for libpdb-redo
libpdb-redo2 - Library file for libpdb-redo
Changes:
libpdb-redo (2.0.3-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
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b1938781cdba38a15ca9e3b06b8d6cd31386b21a 3480416 libpdb-redo2-dbgsym_2.0.3-1_armhf.deb
a6e88d1dd8714f5d712988133a266fe1dc186ff0 177488 libpdb-redo2_2.0.3-1_armhf.deb
235bdfd78ca7fd22af731d03faf081d04d8af347 8248 libpdb-redo_2.0.3-1_armhf.buildinfo
Checksums-Sha256:
2078c0107c49efa5d57e71559e4605582e8a583b2feeea4acccde200b4ad2661 626780 libpdb-redo-dev_2.0.3-1_armhf.deb
9c4c5281375df94e2b9e85c1175fa68455b3625c26cfc7ef2e00f64c58c2fe44 3480416 libpdb-redo2-dbgsym_2.0.3-1_armhf.deb
ec428e5fa235f778acdb4f0652d2cda4da11e383bf6680388cff20d71ceda78a 177488 libpdb-redo2_2.0.3-1_armhf.deb
421c2af9b318cc9e69686af250f8305fbfbad43e5b03a7529563025ba2fc4c26 8248 libpdb-redo_2.0.3-1_armhf.buildinfo
Files:
1ab8c2c66e1ba905cbe85516627386b7 626780 libdevel optional libpdb-redo-dev_2.0.3-1_armhf.deb
cf495419b1c648925642e0190b198282 3480416 debug optional libpdb-redo2-dbgsym_2.0.3-1_armhf.deb
fea004a8b5f91755274086f3fbc8ba29 177488 libs optional libpdb-redo2_2.0.3-1_armhf.deb
017e6eb760511edef40a30c22d992b5e 8248 libs optional libpdb-redo_2.0.3-1_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libpdb-redo-dev_2.0.3-1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 626780 bytes: control archive=1376 bytes.
538 bytes, 16 lines control
1911 bytes, 24 lines md5sums
Package: libpdb-redo-dev
Source: libpdb-redo
Version: 2.0.3-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1067
Depends: libpdb-redo2 (= 2.0.3-1)
Section: libdevel
Priority: optional
Homepage: https://github.com/PDB-REDO/libpdb-redo
Description: Development files for libpdb-redo
This library contains shared code for the various programs
in the project PDB-REDO.
.
This specific package contains all files needed to develop new
software using libpdb-redo.
drwxr-xr-x root/root 0 2022-02-03 10:29 ./
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/include/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/include/pdb-redo/
-rw-r--r-- root/root 2191 2022-02-03 10:27 ./usr/include/pdb-redo/AtomShape.hpp
-rw-r--r-- root/root 2045 2022-02-03 10:27 ./usr/include/pdb-redo/ClipperWrapper.hpp
-rw-r--r-- root/root 9352 2022-02-03 10:27 ./usr/include/pdb-redo/Compound.hpp
-rw-r--r-- root/root 3136 2022-02-03 10:27 ./usr/include/pdb-redo/DistanceMap.hpp
-rw-r--r-- root/root 5718 2022-02-03 10:27 ./usr/include/pdb-redo/MapMaker.hpp
-rw-r--r-- root/root 5832 2022-02-03 10:27 ./usr/include/pdb-redo/Minimizer.hpp
-rw-r--r-- root/root 1814 2022-02-03 10:27 ./usr/include/pdb-redo/Ramachandran.hpp
-rw-r--r-- root/root 2043 2022-02-03 10:27 ./usr/include/pdb-redo/ResolutionCalculator.hpp
-rw-r--r-- root/root 5984 2022-02-03 10:27 ./usr/include/pdb-redo/Restraints.hpp
-rw-r--r-- root/root 4925 2022-02-03 10:27 ./usr/include/pdb-redo/SkipList.hpp
-rw-r--r-- root/root 4464 2022-02-03 10:27 ./usr/include/pdb-redo/Statistics.hpp
-rw-r--r-- root/root 6155 2022-02-03 10:27 ./usr/include/pdb-redo/Symmetry-2.hpp
-rw-r--r-- root/root 1055 2022-02-03 10:29 ./usr/include/pdb-redo/pdb-redo_export.hpp
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/cmake/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/
-rw-r--r-- root/root 1703 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoConfig.cmake
-rw-r--r-- root/root 1977 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoConfigVersion.cmake
-rw-r--r-- root/root 889 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoTargets-none.cmake
-rw-r--r-- root/root 4382 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoTargets.cmake
lrwxrwxrwx root/root 0 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/libpdb-redo.so -> libpdb-redo.so.2
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 297 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libpdb-redo.pc
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/share/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/share/doc/libpdb-redo-dev/
-rw-r--r-- root/root 697 2022-02-03 10:29 ./usr/share/doc/libpdb-redo-dev/changelog.Debian.gz
-rw-r--r-- root/root 326 2022-02-03 10:27 ./usr/share/doc/libpdb-redo-dev/changelog.gz
-rw-r--r-- root/root 3497 2022-02-03 10:29 ./usr/share/doc/libpdb-redo-dev/copyright
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/share/doc/libpdb-redo-dev/examples/
-rw-r--r-- root/root 993520 2022-02-03 10:27 ./usr/share/doc/libpdb-redo-dev/examples/1cbs_map.mtz
-rw-r--r-- root/root 2354 2022-02-03 10:29 ./usr/share/doc/libpdb-redo-dev/examples/CMakeLists.txt
-rw-r--r-- root/root 968 2022-02-03 10:27 ./usr/share/doc/libpdb-redo-dev/examples/example.cpp
libpdb-redo2-dbgsym_2.0.3-1_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 3480416 bytes: control archive=540 bytes.
390 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libpdb-redo2-dbgsym
Source: libpdb-redo
Version: 2.0.3-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3564
Depends: libpdb-redo2 (= 2.0.3-1)
Section: debug
Priority: optional
Description: debug symbols for libpdb-redo2
Build-Ids: 1a069497ca2e352b9c5a53752c5ce7947baacdfd
drwxr-xr-x root/root 0 2022-02-03 10:29 ./
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/lib/debug/.build-id/1a/
-rw-r--r-- root/root 3639096 2022-02-03 10:29 ./usr/lib/debug/.build-id/1a/069497ca2e352b9c5a53752c5ce7947baacdfd.debug
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/share/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-02-03 10:29 ./usr/share/doc/libpdb-redo2-dbgsym -> libpdb-redo2
libpdb-redo2_2.0.3-1_armhf.deb
------------------------------
new Debian package, version 2.0.
size 177488 bytes: control archive=892 bytes.
659 bytes, 15 lines control
309 bytes, 4 lines md5sums
38 bytes, 1 lines shlibs
65 bytes, 2 lines triggers
Package: libpdb-redo2
Source: libpdb-redo
Version: 2.0.3-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 587
Depends: libboost-iostreams1.74.0 (>= 1.74.0), libc6 (>= 2.32), libcifpp2 (>= 2.0.4), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.5), libnewuoa0 (>= 0.1.1), libstdc++6 (>= 11), libzeep5.1 (>= 5.1.7)
Section: libs
Priority: optional
Homepage: https://github.com/PDB-REDO/libpdb-redo
Description: Library file for libpdb-redo
This library contains shared code for the various programs
in the project PDB-REDO.
.
This package contains the shared library for libpdb-redo.
drwxr-xr-x root/root 0 2022-02-03 10:29 ./
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/libpdb-redo.so.2 -> libpdb-redo.so.2.0.3
-rw-r--r-- root/root 583584 2022-02-03 10:29 ./usr/lib/arm-linux-gnueabihf/libpdb-redo.so.2.0.3
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/share/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-02-03 10:29 ./usr/share/doc/libpdb-redo2/
-rw-r--r-- root/root 697 2022-02-03 10:29 ./usr/share/doc/libpdb-redo2/changelog.Debian.gz
-rw-r--r-- root/root 326 2022-02-03 10:27 ./usr/share/doc/libpdb-redo2/changelog.gz
-rw-r--r-- root/root 3497 2022-02-03 10:29 ./usr/share/doc/libpdb-redo2/copyright
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| Cleanup |
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Purging /<<BUILDDIR>>
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Build Architecture: armhf
Build-Space: 77032
Build-Time: 267
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 397
Job: libpdb-redo_2.0.3-1
Machine Architecture: armhf
Package: libpdb-redo
Package-Time: 687
Source-Version: 2.0.3-1
Space: 77032
Status: successful
Version: 2.0.3-1
--------------------------------------------------------------------------------
Finished at 2022-02-06T05:31:08Z
Build needed 00:11:27, 77032k disk space