libpdb-redo →
1.0.2-2+b1 →
armhf → 2021-11-03 08:19:35
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| libpdb-redo 1.0.2-2+b1 (armhf) Wed, 03 Nov 2021 07:54:29 +0000 |
+==============================================================================+
Package: libpdb-redo
Version: 1.0.2-2+b1
Source Version: 1.0.2-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-ce3d8fbe-33ae-4da5-be86-32c22e1596c8' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.5 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.9 MB in 31s (834 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libpdb-redo' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libpdb-redo.git
Please use:
git clone https://salsa.debian.org/med-team/libpdb-redo.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 4170 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main libpdb-redo 1.0.2-2 (dsc) [2299 B]
Get:2 http://172.17.0.1/private bookworm-staging/main libpdb-redo 1.0.2-2 (tar) [4163 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main libpdb-redo 1.0.2-2 (diff) [4788 B]
Fetched 4170 kB in 3s (1264 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libpdb-redo-TKwDL1/libpdb-redo-1.0.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libpdb-redo-TKwDL1' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-dzZ7ai/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-dzZ7ai/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2876 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 844 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [844 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 844 B in 0s (21.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12500 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libcifpp-dev (>= 1.0.1), autoconf-archive, libnewuoa-dev, pkg-config, libgsl-dev, libboost-dev, libboost-iostreams-dev, libzeep-dev (>= 5.0.2), libclipper-dev, libccp4-dev (>= 6.5.1-5)
Filtered Build-Depends: debhelper-compat (= 13), libcifpp-dev (>= 1.0.1), autoconf-archive, libnewuoa-dev, pkg-config, libgsl-dev, libboost-dev, libboost-iostreams-dev, libzeep-dev (>= 5.0.2), libclipper-dev, libccp4-dev (>= 6.5.1-5)
dpkg-deb: building package 'sbuild-build-depends-libpdb-redo-dummy' in '/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive/sbuild-build-depends-libpdb-redo-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libpdb-redo-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive ./ Sources [587 B]
Get:5 copy:/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive ./ Packages [668 B]
Fetched 2588 B in 1s (3493 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libpdb-redo build dependencies (apt-based resolver)
-----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev bsdextrautils
debhelper dh-autoreconf dh-strip-nondeterminism dwz fftw-dev fftw2 file
gettext gettext-base groff-base icu-devtools intltool-debian
libarchive-zip-perl libboost-date-time-dev libboost-date-time1.74-dev
libboost-date-time1.74.0 libboost-dev libboost-iostreams-dev
libboost-iostreams1.74-dev libboost-iostreams1.74.0
libboost-program-options-dev libboost-program-options1.74-dev
libboost-program-options1.74.0 libboost-regex1.74-dev libboost-regex1.74.0
libboost-serialization1.74-dev libboost-serialization1.74.0
libboost-system-dev libboost-system1.74-dev libboost-system1.74.0
libboost1.74-dev libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0
libcifpp-data libcifpp-dev libcifpp1 libclipper-dev libclipper2
libdebhelper-perl libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7
libfabric1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
libgsl-dev libgsl25 libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1
libicu-dev libicu67 libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev
libnewuoa-dev libnewuoa0 libnl-3-200 libnl-route-3-200 libopenmpi3
libpciaccess0 libpipeline1 libpmix2 librdmacm1 libsigsegv2
libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libzeep-dev libzeep5.1 m4
man-db ocl-icd-libopencl1 pkg-config po-debconf sensible-utils sfftw-dev
sfftw2
Suggested packages:
gnu-standards autoconf-doc dh-make mpi-defaults-bin gettext-doc
libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.74-doc
libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev
libboost-context1.74-dev libboost-contract1.74-dev
libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev
libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev
libboost-numpy1.74-dev libboost-python1.74-dev libboost-random1.74-dev
libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
libclipper-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
icu-doc pciutils libtool-doc gfortran | fortran95-compiler gcj-jdk
libzeep-doc mrc m4-doc apparmor less www-browser opencl-icd libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs ibverbs-providers libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev bsdextrautils
debhelper dh-autoreconf dh-strip-nondeterminism dwz fftw-dev fftw2 file
gettext gettext-base groff-base icu-devtools intltool-debian
libarchive-zip-perl libboost-date-time-dev libboost-date-time1.74-dev
libboost-date-time1.74.0 libboost-dev libboost-iostreams-dev
libboost-iostreams1.74-dev libboost-iostreams1.74.0
libboost-program-options-dev libboost-program-options1.74-dev
libboost-program-options1.74.0 libboost-regex1.74-dev libboost-regex1.74.0
libboost-serialization1.74-dev libboost-serialization1.74.0
libboost-system-dev libboost-system1.74-dev libboost-system1.74.0
libboost1.74-dev libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0
libcifpp-data libcifpp-dev libcifpp1 libclipper-dev libclipper2
libdebhelper-perl libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7
libfabric1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
libgsl-dev libgsl25 libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1
libicu-dev libicu67 libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev
libnewuoa-dev libnewuoa0 libnl-3-200 libnl-route-3-200 libopenmpi3
libpciaccess0 libpipeline1 libpmix2 librdmacm1 libsigsegv2
libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libzeep-dev libzeep5.1 m4
man-db ocl-icd-libopencl1 pkg-config po-debconf
sbuild-build-depends-libpdb-redo-dummy sensible-utils sfftw-dev sfftw2
0 upgraded, 100 newly installed, 0 to remove and 1 not upgraded.
Need to get 54.0 MB of archives.
After this operation, 332 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-dzZ7ai/apt_archive ./ sbuild-build-depends-libpdb-redo-dummy 0.invalid.0 [952 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-4 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf autoconf-archive all 20210219-2 [767 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.5-1 [823 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-2 [15.5 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf libboost-date-time1.74.0 armhf 1.74.0-9 [241 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libboost-serialization1.74.0 armhf 1.74.0-9 [319 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libboost-serialization1.74-dev armhf 1.74.0-9 [388 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libboost-date-time1.74-dev armhf 1.74.0-9 [251 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libboost-date-time-dev armhf 1.74.0.3+b1 [4604 B]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b1 [4820 B]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libboost-regex1.74.0 armhf 1.74.0-9 [448 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libboost-regex1.74-dev armhf 1.74.0-9 [553 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libboost-iostreams1.74.0 armhf 1.74.0-9 [260 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libboost-iostreams1.74-dev armhf 1.74.0-9 [269 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libboost-iostreams-dev armhf 1.74.0.3+b1 [4588 B]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libboost-program-options1.74.0 armhf 1.74.0-9 [334 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libboost-program-options1.74-dev armhf 1.74.0-9 [374 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libboost-program-options-dev armhf 1.74.0.3+b1 [4616 B]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libboost-system1.74.0 armhf 1.74.0-9 [242 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libboost-system1.74-dev armhf 1.74.0-9 [243 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libboost-system-dev armhf 1.74.0.3+b1 [4744 B]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libccp4-data all 6.5.1-5 [61.6 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libccp4c0 armhf 6.5.1-5 [74.3 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-10+rpi1 [234 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libmmdb2-0 armhf 2.0.5-1 [264 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libccp4f0 armhf 6.5.1-5 [202 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libccp4-dev armhf 6.5.1-5 [42.8 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libcifpp-data all 1.0.1-5 [584 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libcifpp1 armhf 1.0.1-5 [742 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libcifpp-dev armhf 1.0.1-5 [67.9 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-1 [126 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-1 [56.8 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libibverbs1 armhf 36.0-1 [53.2 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf librdmacm1 armhf 36.0-1 [60.1 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libfabric1 armhf 1.11.0-2 [311 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libhwloc15 armhf 2.6.0-1 [127 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libpciaccess0 armhf 0.16-1 [51.0 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libxnvctrl0 armhf 470.57.02-2 [26.0 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf ocl-icd-libopencl1 armhf 2.2.14-3 [39.9 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libhwloc-plugins armhf 2.6.0-1 [20.2 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libpmix2 armhf 4.1.1~rc4-1 [477 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libopenmpi3 armhf 4.1.2~rc1-4+rpi1 [1779 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf fftw2 armhf 2.1.5-4.2+b2 [244 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf fftw-dev armhf 2.1.5-4.2+b2 [264 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf sfftw2 armhf 2.1.5-4.2+b2 [229 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libclipper2 armhf 2.1.20201109-1 [1069 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libmmdb2-dev armhf 2.0.5-1 [91.9 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf sfftw-dev armhf 2.1.5-4.2+b2 [250 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libclipper-dev armhf 2.1.20201109-1 [82.6 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.0-3 [1209 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.6+dfsg-2 [79.5 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libgsl25 armhf 2.6+dfsg-2 [753 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libgsl-dev armhf 2.6+dfsg-2 [950 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libnewuoa0 armhf 0.1.1-2 [16.4 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libnewuoa-dev armhf 0.1.1-2 [4916 B]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libzeep5.1 armhf 5.1.4-1 [492 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libzeep-dev armhf 5.1.4-1 [78.6 kB]
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Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up autoconf-archive (20210219-2) ...
Setting up file (1:5.39-3) ...
Setting up libccp4-data (6.5.1-5) ...
Setting up libnewuoa0 (0.1.1-2) ...
Setting up libboost-program-options1.74-dev:armhf (1.74.0-9) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libboost-program-options-dev:armhf (1.74.0.3+b1) ...
Setting up libx11-data (2:1.7.2-2) ...
Setting up libboost-system1.74-dev:armhf (1.74.0-9) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libboost-regex1.74.0:armhf (1.74.0-9) ...
Setting up libhwloc15:armhf (2.6.0-1) ...
Setting up libevent-core-2.1-7:armhf (2.1.12-stable-1) ...
Setting up libmmdb2-dev (2.0.5-1) ...
Setting up autopoint (0.21-4) ...
Setting up icu-devtools (67.1-7) ...
Setting up pkg-config (0.29.2-1) ...
Setting up libccp4c0:armhf (6.5.1-5) ...
Setting up libcifpp-data (1.0.1-5) ...
Setting up libgfortran5:armhf (11.2.0-10+rpi1) ...
Setting up libboost-serialization1.74.0:armhf (1.74.0-9) ...
Setting up libcifpp1 (1.0.1-5) ...
Setting up libmd0:armhf (1.0.4-1) ...
Setting up sensible-utils (0.0.17) ...
Setting up ocl-icd-libopencl1:armhf (2.2.14-3) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libnl-3-200:armhf (3.4.0-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libboost-dev:armhf (1.74.0.3+b1) ...
Setting up libboost-date-time1.74.0:armhf (1.74.0-9) ...
Setting up libzeep5.1 (5.1.4-1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libicu-dev:armhf (67.1-7) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-1) ...
Setting up libccp4f0:armhf (6.5.1-5) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up libgsl-dev (2.6+dfsg-2) ...
Setting up libccp4-dev:armhf (6.5.1-5) ...
Setting up libtool (2.4.6-15) ...
Setting up libnewuoa-dev (0.1.1-2) ...
Setting up libboost-system-dev:armhf (1.74.0.3+b1) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up autoconf (2.71-2) ...
Setting up libboost-serialization1.74-dev:armhf (1.74.0-9) ...
Setting up libcifpp-dev:armhf (1.0.1-5) ...
Setting up dh-strip-nondeterminism (1.12.0-2) ...
Setting up dwz (0.14-1) ...
Setting up libboost-regex1.74-dev:armhf (1.74.0-9) ...
Setting up groff-base (1.22.4-7) ...
Setting up libx11-6:armhf (2:1.7.2-2) ...
Setting up automake (1:1.16.5-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libibverbs1:armhf (36.0-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxnvctrl0:armhf (470.57.02-2) ...
Setting up libboost-iostreams1.74-dev:armhf (1.74.0-9) ...
Setting up dh-autoreconf (20) ...
Setting up libboost-date-time1.74-dev:armhf (1.74.0-9) ...
Setting up libboost-date-time-dev:armhf (1.74.0.3+b1) ...
Setting up librdmacm1:armhf (36.0-1) ...
Setting up debhelper (13.5.2) ...
Setting up libboost-iostreams-dev:armhf (1.74.0.3+b1) ...
Setting up libhwloc-plugins:armhf (2.6.0-1) ...
Setting up libzeep-dev (5.1.4-1) ...
Setting up libfabric1 (1.11.0-2) ...
Setting up libpmix2:armhf (4.1.1~rc4-1) ...
Setting up libopenmpi3:armhf (4.1.2~rc1-4+rpi1) ...
Setting up sfftw2 (2.1.5-4.2+b2) ...
Setting up fftw2 (2.1.5-4.2+b2) ...
Setting up sfftw-dev (2.1.5-4.2+b2) ...
Setting up libclipper2:armhf (2.1.20201109-1) ...
Setting up fftw-dev (2.1.5-4.2+b2) ...
Setting up libclipper-dev:armhf (2.1.20201109-1) ...
Setting up sbuild-build-depends-libpdb-redo-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.9-2+rpi1
Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 autoconf-archive_20210219-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 dash_0.5.11+git20210903+057cd650a4ed-1 debconf_1.5.78 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 fftw-dev_2.1.5-4.2+b2 fftw2_2.1.5-4.2+b2 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan6_11.2.0-10+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-10+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-4 libboost-date-time-dev_1.74.0.3+b1 libboost-date-time1.74-dev_1.74.0-9 libboost-date-time1.74.0_1.74.0-9 libboost-dev_1.74.0.3+b1 libboost-iostreams-dev_1.74.0.3+b1 libboost-iostreams1.74-dev_1.74.0-9 libboost-iostreams1.74.0_1.74.0-9 libboost-program-options-dev_1.74.0.3+b1 libboost-program-options1.74-dev_1.74.0-9 libboost-program-options1.74.0_1.74.0-9 libboost-regex1.74-dev_1.74.0-9 libboost-regex1.74.0_1.74.0-9 libboost-serialization1.74-dev_1.74.0-9 libboost-serialization1.74.0_1.74.0-9 libboost-system-dev_1.74.0.3+b1 libboost-system1.74-dev_1.74.0-9 libboost-system1.74.0_1.74.0-9 libboost1.74-dev_1.74.0-9 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10+rpi1 libccp4-data_6.5.1-5 libccp4-dev_6.5.1-5 libccp4c0_6.5.1-5 libccp4f0_6.5.1-5 libcifpp-data_1.0.1-5 libcifpp-dev_1.0.1-5 libcifpp1_1.0.1-5 libclipper-dev_2.1.20201109-1 libclipper2_2.1.20201109-1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libevent-core-2.1-7_2.1.12-stable-1 libevent-pthreads-2.1-7_2.1.12-stable-1 libext2fs2_1.46.4-1 libfabric1_1.11.0-2 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-2 libgcc-10-dev_10.3.0-11+rpi1 libgcc-s1_11.2.0-10+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran5_11.2.0-10+rpi1 libglib2.0-0_2.70.0-3 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10+rpi1 libgpg-error0_1.42-3 libgsl-dev_2.6+dfsg-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhwloc-plugins_2.6.0-1 libhwloc15_2.6.0-1 libibverbs1_36.0-1 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.4-1 libmmdb2-0_2.0.5-1 libmmdb2-dev_2.0.5-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnewuoa-dev_0.1.1-2 libnewuoa0_0.1.1-2 libnl-3-200_3.4.0-1 libnl-route-3-200_3.4.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenmpi3_4.1.2~rc1-4+rpi1 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpciaccess0_0.16-1 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libpmix2_4.1.1~rc4-1 librdmacm1_36.0-1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.5-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_249.5-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxml2_2.9.12+dfsg-5 libxnvctrl0_470.57.02-2 libxxhash0_0.8.0-2+rpi1 libzeep-dev_5.1.4-1 libzeep5.1_5.1.4-1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.9-2+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 ocl-icd-libopencl1_2.2.14-3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libpdb-redo-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sfftw-dev_2.1.5-4.2+b2 sfftw2_2.1.5-4.2+b2 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.39K4lYCy/trustedkeys.kbx': General error
gpgv: Signature made Wed Jan 6 10:54:36 2021 UTC
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libpdb-redo_1.0.2-2.dsc
dpkg-source: info: extracting libpdb-redo in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libpdb-redo_1.0.2.orig.tar.gz
dpkg-source: info: unpacking libpdb-redo_1.0.2-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying no-data-update.patch
dpkg-source: info: applying unit-test.patch
dpkg-source: info: applying configure.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.0.2-2+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-ce3d8fbe-33ae-4da5-be86-32c22e1596c8
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libpdb-redo
dpkg-buildpackage: info: source version 1.0.2-2+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac,
libtoolize: and rerunning libtoolize and aclocal.
libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
configure.ac:141: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:141: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:141: the top level
configure.ac:141: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:141: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2894: _AC_LINK_IFELSE is expanded from...
./lib/autoconf/general.m4:2911: AC_LINK_IFELSE is expanded from...
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:141: the top level
configure.ac:259: warning: AC_OUTPUT should be used without arguments.
configure.ac:259: You should run autoupdate.
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-shared --disable-static
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-shared --disable-static
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking whether g++ supports C++17 features with -std=c++17... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for gcc... gcc
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking for gawk... no
checking for mawk... mawk
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -std=c++17 -E
checking for ld used by g++ -std=c++17... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ -std=c++17 linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ -std=c++17 option to produce PIC... -fPIC -DPIC
checking if g++ -std=c++17 PIC flag -fPIC -DPIC works... yes
checking if g++ -std=c++17 static flag -static works... yes
checking if g++ -std=c++17 supports -c -o file.o... yes
checking if g++ -std=c++17 supports -c -o file.o... (cached) yes
checking whether the g++ -std=c++17 linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether C++ compiler accepts -fstandalone-debug... no
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for mrc... USE_RSRC=1
checking for sin in -lm... yes
checking for gsl ... yes
checking how to run the C preprocessor... gcc -E
checking whether gcc is Clang... no
checking whether pthreads work with "-pthread" and "-lpthread"... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking for boostlib >= 1.71 (107100)... yes
checking whether the Boost::IOStreams library is available... yes
checking for exit in -lboost_iostreams... yes
checking for filesystem... yes
checking for endian.h... yes
checking for libcifpp ... yes
checking for libzeep ... yes
checking for clipper ... yes
checking clipper version... ok
checking for dlib/global_optimization.h... no
configure: WARNING: libdlib-dev not found
checking for newuoa ... yes
configure: creating ./config.status
config.status: creating GNUmakefile
config.status: creating libpdb-redo.pc
config.status: creating src/config.hpp
config.status: executing libtool commands
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p obj
>> src/AtomShape.cpp
>> src/BondMap.cpp
>> src/ClipperWrapper.cpp
>> src/DistanceMap.cpp
>> src/MapMaker.cpp
>> src/Minimizer.cpp
In file included from /usr/include/c++/10/vector:72,
from /usr/include/cif++/CifUtils.hpp:31,
from src/DistanceMap.cpp:32:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {clipper::RTop_orth}; _Tp = clipper::RTop_orth; _Alloc = std::allocator<clipper::RTop_orth>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::RTop_orth>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {clipper::RTop_orth}; _Tp = clipper::RTop_orth; _Alloc = std::allocator<clipper::RTop_orth>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<clipper::RTop_orth*, std::vector<clipper::RTop_orth> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> src/Ramachandran.cpp
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from src/BondMap.cpp:30:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >; _Distance = int; _Tp = mmcif::{anonymous}::CompoundBondInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mmcif::createBondInfoFile(const std::filesystem::__cxx11::path&, const std::filesystem::__cxx11::path&)::<lambda(mmcif::{anonymous}::CompoundBondInfo&, mmcif::{anonymous}::CompoundBondInfo&)> >]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from src/BondMap.cpp:30:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<mmcif::createBondInfoFile(const std::filesystem::__cxx11::path&, const std::filesystem::__cxx11::path&)::<lambda(mmcif::{anonymous}::CompoundBondInfo&, mmcif::{anonymous}::CompoundBondInfo&)> >]’:
/usr/include/c++/10/bits/stl_algo.h:1824:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1824 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mmcif::createBondInfoFile(const std::filesystem::__cxx11::path&, const std::filesystem::__cxx11::path&)::<lambda(mmcif::{anonymous}::CompoundBondInfo&, mmcif::{anonymous}::CompoundBondInfo&)> >]’:
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1844 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mmcif::createBondInfoFile(const std::filesystem::__cxx11::path&, const std::filesystem::__cxx11::path&)::<lambda(mmcif::{anonymous}::CompoundBondInfo&, mmcif::{anonymous}::CompoundBondInfo&)> >]’:
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1950 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1964:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1964 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> src/ResolutionCalculator.cpp
/usr/include/c++/10/bits/stl_algo.h: In function ‘void mmcif::createBondInfoFile(const std::filesystem::__cxx11::path&, const std::filesystem::__cxx11::path&)’:
/usr/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1979 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1980 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1981 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1896 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
src/MapMaker.cpp: In member function ‘void mmcif::MapMaker<FTYPE>::fixMTZ() [with FTYPE = float]’:
src/MapMaker.cpp:1033:8: note: parameter passing for argument of type ‘clipper::datatypes::F_phi<float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1033 | auto mFo = mFbData[ih] - mFdData[ih];
| ^~~
>> src/Restraints.cpp
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from src/Minimizer.cpp:35:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {TransPeptideRestraint}; _Tp = TransPeptideRestraint; _Alloc = std::allocator<TransPeptideRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<TransPeptideRestraint>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {PlanarityRestraint}; _Tp = PlanarityRestraint; _Alloc = std::allocator<PlanarityRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PlanarityRestraint>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {PlanarityRestraint}; _Tp = PlanarityRestraint; _Alloc = std::allocator<PlanarityRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PlanarityRestraint*, std::vector<PlanarityRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {unsigned int, unsigned int, float&, float&}; _Tp = BondRestraint; _Alloc = std::allocator<BondRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<BondRestraint>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {unsigned int, unsigned int, float&, float&}; _Tp = BondRestraint; _Alloc = std::allocator<BondRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BondRestraint*, std::vector<BondRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {unsigned int, unsigned int, unsigned int, float&, float&}; _Tp = AngleRestraint; _Alloc = std::allocator<AngleRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AngleRestraint>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {unsigned int, unsigned int, unsigned int, float&, float&}; _Tp = AngleRestraint; _Alloc = std::allocator<AngleRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AngleRestraint*, std::vector<AngleRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {unsigned int, unsigned int, unsigned int, unsigned int, float}; _Tp = ChiralVolumeRestraint; _Alloc = std::allocator<ChiralVolumeRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<ChiralVolumeRestraint>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {unsigned int&, unsigned int&, double&, double}; _Tp = NonBondedContactRestraint; _Alloc = std::allocator<NonBondedContactRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<NonBondedContactRestraint>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {unsigned int, unsigned int, unsigned int, unsigned int, float&}; _Tp = ChiralVolumeRestraint; _Alloc = std::allocator<ChiralVolumeRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<ChiralVolumeRestraint>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void Minimizer::addLinkRestraints(const mmcif::Monomer&, const mmcif::Monomer&, const mmcif::Link&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ChiralVolumeRestraint*, std::vector<ChiralVolumeRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<unsigned int, double>}; _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<unsigned int, double> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
>> src/SkipList.cpp
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/ext/slist:47,
from /usr/include/boost/algorithm/string/std/slist_traits.hpp:16,
from /usr/include/boost/algorithm/string/std_containers_traits.hpp:23,
from /usr/include/boost/algorithm/string.hpp:18,
from src/Restraints.cpp:36:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/ext/slist:47,
from /usr/include/boost/algorithm/string/std/slist_traits.hpp:16,
from /usr/include/boost/algorithm/string/std_containers_traits.hpp:23,
from /usr/include/boost/algorithm/string.hpp:18,
from src/Restraints.cpp:36:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<T> clipper::Matrix<T>::eigen(bool) [with T = double]’:
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/boost/format.hpp:17,
from src/MapMaker.cpp:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/boost/format.hpp:17,
from src/MapMaker.cpp:33:
/usr/include/c++/10/bits/stl_vector.h: In constructor ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’:
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/boost/format.hpp:17,
from src/MapMaker.cpp:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {clipper::Atom}; _Tp = clipper::Atom; _Alloc = std::allocator<clipper::Atom>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::Atom>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {clipper::Atom}; _Tp = clipper::Atom; _Alloc = std::allocator<clipper::Atom>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<clipper::Atom*, std::vector<clipper::Atom> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> src/Statistics.cpp
/usr/include/c++/10/bits/vector.tcc: In constructor ‘Minimizer::Minimizer(const mmcif::Polymer&, int, int, const mmcif::BondMap&, const XMap&, float, float)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TransPeptideRestraint*, std::vector<TransPeptideRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ChiralVolumeRestraint*, std::vector<ChiralVolumeRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<NonBondedContactRestraint*, std::vector<NonBondedContactRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/bits/stl_algobase.h:64,
from /usr/include/c++/10/bits/char_traits.h:39,
from /usr/include/c++/10/ios:40,
from /usr/include/c++/10/istream:38,
from /usr/include/c++/10/fstream:38,
from src/Statistics.cpp:29:
/usr/include/c++/10/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type = double; typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type = double]’:
src/Statistics.cpp:610:80: required from here
/usr/include/c++/10/bits/stl_pair.h:567:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
567 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
>> src/Symmetry-2.cpp
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/functional:65,
from /usr/include/cif++/Point.hpp:29,
from /usr/include/cif++/Structure.hpp:32,
from src/Statistics.cpp:32:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/functional:65,
from /usr/include/cif++/Point.hpp:29,
from /usr/include/cif++/Structure.hpp:32,
from src/Statistics.cpp:32:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1844 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1950 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1964:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1964 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/cif++/Point.hpp:29,
from /usr/include/cif++/Structure.hpp:32,
from src/Statistics.cpp:32:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {mmcif::ResidueStatistics}; _Tp = mmcif::ResidueStatistics; _Alloc = std::allocator<mmcif::ResidueStatistics>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<mmcif::ResidueStatistics>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const clipper::Coord_grid&, double&}; _Tp = mmcif::AtomGridData; _Alloc = std::allocator<mmcif::AtomGridData>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<mmcif::AtomGridData>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void mmcif::StatsCollector::sumDensity(std::vector<mmcif::AtomData>&, mmcif::StatsCollector::GridPtDataMap&, std::map<std::__cxx11::basic_string<char>, std::vector<double> >&) const’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::AtomGridData*, std::vector<mmcif::AtomGridData> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {mmcif::Atom&, float&}; _Tp = mmcif::AtomData; _Alloc = std::allocator<mmcif::AtomData>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<mmcif::AtomData>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {mmcif::Atom&, float&}; _Tp = mmcif::AtomData; _Alloc = std::allocator<mmcif::AtomData>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::AtomData*, std::vector<mmcif::AtomData> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/functional:65,
from /usr/include/cif++/Point.hpp:29,
from /usr/include/cif++/Structure.hpp:32,
from src/Statistics.cpp:32:
/usr/include/c++/10/bits/stl_algo.h: In member function ‘void mmcif::StatsCollector::initialize()’:
/usr/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1979 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1980 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1981 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1896 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/cif++/Point.hpp:29,
from /usr/include/cif++/Structure.hpp:32,
from src/Statistics.cpp:32:
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<mmcif::ResidueStatistics> mmcif::StatsCollector::collect(const std::vector<std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, mmcif::BoundingBox&, bool) const’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::ResidueStatistics*, std::vector<mmcif::ResidueStatistics> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::ResidueStatistics*, std::vector<mmcif::ResidueStatistics> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/cif++/CifUtils.hpp:31,
from src/Symmetry-2.cpp:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {clipper::Coord_orth}; _Tp = clipper::Coord_orth; _Alloc = std::allocator<clipper::Coord_orth>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::Coord_orth>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘clipper::Coord_orth CalculateOffsetForCell(const mmcif::Structure&, const clipper::Spacegroup&, const clipper::Cell&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<clipper::Coord_orth*, std::vector<clipper::Coord_orth> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {clipper::RTop_orth}; _Tp = clipper::RTop_orth; _Alloc = std::allocator<clipper::RTop_orth>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::RTop_orth>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::RTop_orth>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {clipper::RTop_orth}; _Tp = clipper::RTop_orth; _Alloc = std::allocator<clipper::RTop_orth>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<clipper::RTop_orth*, std::vector<clipper::RTop_orth> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/sh /<<PKGBUILDDIR>>/libtool --silent --tag=CXX --mode=link g++ -std=c++17 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wall -Wno-multichar -I include -O2 -DDATADIR='"/usr/share/libpdb-redo"' -DNDEBUG -Wl,-z,relro -Wl,-z,now -pthread -version-info 1:0:0 -o libpdb-redo.la -rpath /usr/lib/arm-linux-gnueabihf obj/AtomShape.lo obj/BondMap.lo obj/ClipperWrapper.lo obj/DistanceMap.lo obj/MapMaker.lo obj/Minimizer.lo obj/Ramachandran.lo obj/ResolutionCalculator.lo obj/Restraints.lo obj/SkipList.lo obj/Statistics.lo obj/Symmetry-2.lo -lcifpp -lzeep -lgsl -lgslcblas -lm -lnewuoa -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lboost_iostreams -lm
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make test
make[2]: Entering directory '/<<PKGBUILDDIR>>'
>> test/unit-test.cpp
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/smart_ptr/detail/shared_count.hpp:37,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /usr/include/boost/test/execution_monitor.hpp:24,
from /usr/include/boost/test/impl/compiler_log_formatter.ipp:22,
from /usr/include/boost/test/included/unit_test.hpp:18,
from test/unit-test.cpp:28:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {TestResidue}; _Tp = TestResidue; _Alloc = std::allocator<TestResidue>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<TestResidue>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<TestResidue>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void stats_1::test_method()’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TestResidue*, std::vector<TestResidue> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>> building unit-test
g++ -std=c++17 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wall -Wno-multichar -I include -O2 -DDATADIR='"/usr/share/libpdb-redo"' -DNDEBUG -Wl,-z,relro -Wl,-z,now -pthread -o test/unit-test obj/unit-test.o -L.libs -lpdb-redo -lcifpp -lzeep -lgsl -lgslcblas -lm -lnewuoa -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lboost_iostreams -lm
cd test; BOND_INFO_FILE=/<<PKGBUILDDIR>>/rsrc/bond-info.bin.gz LD_LIBRARY_PATH=../.libs ./unit-test
Running 7 test cases...
Missing bond information for compound U_K
Missing information for compound 'U_K'
Missing bond information for compound U_K
[1;32;49m*** No errors detected
[0;39;49mmake[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
install -d /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
/bin/sh /<<PKGBUILDDIR>>/libtool --mode=install install libpdb-redo.la /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
libtool: install: install .libs/libpdb-redo.so.1.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libpdb-redo.so.1.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libpdb-redo.so.1.0.0 libpdb-redo.so.1 || { rm -f libpdb-redo.so.1 && ln -s libpdb-redo.so.1.0.0 libpdb-redo.so.1; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libpdb-redo.so.1.0.0 libpdb-redo.so || { rm -f libpdb-redo.so && ln -s libpdb-redo.so.1.0.0 libpdb-redo.so; }; })
libtool: install: install .libs/libpdb-redo.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libpdb-redo.la
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
install -d /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo
for f in AtomShape.hpp BondMap.hpp ClipperWrapper.hpp DistanceMap.hpp MapMaker.hpp Minimizer.hpp Ramachandran.hpp ResolutionCalculator.hpp Restraints.hpp SkipList.hpp Statistics.hpp Symmetry-2.hpp; do install include/pdb-redo/$f /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/$f; done
install -d /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig
install -m 644 libpdb-redo.pc /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/libpdb-redo.pc
install -d /<<PKGBUILDDIR>>/debian/tmp/usr/share/libpdb-redo
install -m 644 rsrc/bond-info.bin.gz /<<PKGBUILDDIR>>/debian/tmp/usr/share/libpdb-redo/bond-info.bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libpdb-redo1/usr/lib/arm-linux-gnueabihf/libpdb-redo.so.1.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libpdb-redo-dev' in '../libpdb-redo-dev_1.0.2-2+b1_armhf.deb'.
dpkg-deb: building package 'libpdb-redo1' in '../libpdb-redo1_1.0.2-2+b1_armhf.deb'.
dpkg-deb: building package 'libpdb-redo1-dbgsym' in '../libpdb-redo1-dbgsym_1.0.2-2+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libpdb-redo_1.0.2-2+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-11-03T08:19:23Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libpdb-redo_1.0.2-2+b1_armhf.changes:
-------------------------------------
Format: 1.8
Date: Mon, 04 Jan 2021 13:00:54 +0100
Source: libpdb-redo (1.0.2-2)
Binary: libpdb-redo-dev libpdb-redo1 libpdb-redo1-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.0.2-2+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
libpdb-redo-dev - Development files for libpdb-redo
libpdb-redo1 - Library file for libpdb-redo
Changes:
libpdb-redo (1.0.2-2+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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Files:
8f9faf65de1a643d9a3161b00c1075bf 620488 libdevel optional libpdb-redo-dev_1.0.2-2+b1_armhf.deb
fc3e81b2d89ddfc5e98ef14c14aace10 5359516 debug optional libpdb-redo1-dbgsym_1.0.2-2+b1_armhf.deb
a03b1f5a1770a0fd8283edeec87b3670 3163248 libs optional libpdb-redo1_1.0.2-2+b1_armhf.deb
0eadc6f308fecbe8319e508786922147 7829 libs optional libpdb-redo_1.0.2-2+b1_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libpdb-redo-dev_1.0.2-2+b1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 620488 bytes: control archive=1264 bytes.
554 bytes, 16 lines control
1516 bytes, 20 lines md5sums
Package: libpdb-redo-dev
Source: libpdb-redo (1.0.2-2)
Version: 1.0.2-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1041
Depends: libpdb-redo1 (= 1.0.2-2+b1)
Section: libdevel
Priority: optional
Homepage: https://github.com/PDB-REDO/libpdb-redo
Description: Development files for libpdb-redo
This library contains shared code for the various programs
in the project PDB-REDO.
.
This specific package contains all files needed to develop new
software using libpdb-redo.
drwxr-xr-x root/root 0 2021-01-04 12:00 ./
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/include/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/include/pdb-redo/
-rw-r--r-- root/root 2130 2021-01-04 12:00 ./usr/include/pdb-redo/AtomShape.hpp
-rw-r--r-- root/root 3137 2021-01-04 12:00 ./usr/include/pdb-redo/BondMap.hpp
-rw-r--r-- root/root 1804 2021-01-04 12:00 ./usr/include/pdb-redo/ClipperWrapper.hpp
-rw-r--r-- root/root 2881 2021-01-04 12:00 ./usr/include/pdb-redo/DistanceMap.hpp
-rw-r--r-- root/root 5521 2021-01-04 12:00 ./usr/include/pdb-redo/MapMaker.hpp
-rw-r--r-- root/root 4820 2021-01-04 12:00 ./usr/include/pdb-redo/Minimizer.hpp
-rw-r--r-- root/root 1773 2021-01-04 12:00 ./usr/include/pdb-redo/Ramachandran.hpp
-rw-r--r-- root/root 2040 2021-01-04 12:00 ./usr/include/pdb-redo/ResolutionCalculator.hpp
-rw-r--r-- root/root 5875 2021-01-04 12:00 ./usr/include/pdb-redo/Restraints.hpp
-rw-r--r-- root/root 2103 2021-01-04 12:00 ./usr/include/pdb-redo/SkipList.hpp
-rw-r--r-- root/root 4475 2021-01-04 12:00 ./usr/include/pdb-redo/Statistics.hpp
-rw-r--r-- root/root 5491 2021-01-04 12:00 ./usr/include/pdb-redo/Symmetry-2.hpp
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2021-01-04 12:00 ./usr/lib/arm-linux-gnueabihf/libpdb-redo.so -> libpdb-redo.so.1.0.0
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 354 2021-01-04 12:00 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libpdb-redo.pc
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/share/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/share/doc/libpdb-redo-dev/
-rw-r--r-- root/root 224 2021-01-04 12:00 ./usr/share/doc/libpdb-redo-dev/changelog.Debian.armhf.gz
-rw-r--r-- root/root 480 2021-01-04 12:00 ./usr/share/doc/libpdb-redo-dev/changelog.Debian.gz
-rw-r--r-- root/root 80 2020-12-15 15:04 ./usr/share/doc/libpdb-redo-dev/changelog.gz
-rw-r--r-- root/root 3497 2021-01-04 12:00 ./usr/share/doc/libpdb-redo-dev/copyright
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/share/doc/libpdb-redo-dev/examples/
-rw-r--r-- root/root 993520 2020-12-15 15:04 ./usr/share/doc/libpdb-redo-dev/examples/1cbs_map.mtz
-rw-r--r-- root/root 362 2021-01-04 12:00 ./usr/share/doc/libpdb-redo-dev/examples/GNUmakefile
-rw-r--r-- root/root 952 2020-12-15 15:04 ./usr/share/doc/libpdb-redo-dev/examples/example.cpp
libpdb-redo1-dbgsym_1.0.2-2+b1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 5359516 bytes: control archive=548 bytes.
406 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libpdb-redo1-dbgsym
Source: libpdb-redo (1.0.2-2)
Version: 1.0.2-2+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5455
Depends: libpdb-redo1 (= 1.0.2-2+b1)
Section: debug
Priority: optional
Description: debug symbols for libpdb-redo1
Build-Ids: 22f2eb076d5eb24161e587bcfacbc9769c290e9c
drwxr-xr-x root/root 0 2021-01-04 12:00 ./
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/lib/debug/.build-id/22/
-rw-r--r-- root/root 5574944 2021-01-04 12:00 ./usr/lib/debug/.build-id/22/f2eb076d5eb24161e587bcfacbc9769c290e9c.debug
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/share/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-01-04 12:00 ./usr/share/doc/libpdb-redo1-dbgsym -> libpdb-redo1
libpdb-redo1_1.0.2-2+b1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 3163248 bytes: control archive=968 bytes.
691 bytes, 15 lines control
466 bytes, 6 lines md5sums
38 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libpdb-redo1
Source: libpdb-redo (1.0.2-2)
Version: 1.0.2-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3633
Depends: libboost-iostreams1.74.0 (>= 1.74.0), libc6 (>= 2.29), libcifpp1 (>= 1.0.1), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.5), libgsl25 (>= 2.6), libnewuoa0 (>= 0.1.1), libstdc++6 (>= 9), libzeep5.1 (>= 5.1.4)
Section: libs
Priority: optional
Homepage: https://github.com/PDB-REDO/libpdb-redo
Description: Library file for libpdb-redo
This library contains shared code for the various programs
in the project PDB-REDO.
.
This package contains the shared library for libpdb-redo.
drwxr-xr-x root/root 0 2021-01-04 12:00 ./
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2021-01-04 12:00 ./usr/lib/arm-linux-gnueabihf/libpdb-redo.so.1 -> libpdb-redo.so.1.0.0
-rw-r--r-- root/root 751520 2021-01-04 12:00 ./usr/lib/arm-linux-gnueabihf/libpdb-redo.so.1.0.0
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/share/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/share/doc/libpdb-redo1/
-rw-r--r-- root/root 224 2021-01-04 12:00 ./usr/share/doc/libpdb-redo1/changelog.Debian.armhf.gz
-rw-r--r-- root/root 480 2021-01-04 12:00 ./usr/share/doc/libpdb-redo1/changelog.Debian.gz
-rw-r--r-- root/root 80 2020-12-15 15:04 ./usr/share/doc/libpdb-redo1/changelog.gz
-rw-r--r-- root/root 3497 2021-01-04 12:00 ./usr/share/doc/libpdb-redo1/copyright
drwxr-xr-x root/root 0 2021-01-04 12:00 ./usr/share/libpdb-redo/
-rw-r--r-- root/root 2948417 2021-01-04 12:00 ./usr/share/libpdb-redo/bond-info.bin
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 129816
Build-Time: 853
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 581
Job: libpdb-redo_1.0.2-2
Machine Architecture: armhf
Package: libpdb-redo
Package-Time: 1494
Source-Version: 1.0.2-2
Space: 129816
Status: successful
Version: 1.0.2-2+b1
--------------------------------------------------------------------------------
Finished at 2021-11-03T08:19:23Z
Build needed 00:24:54, 129816k disc space