libpdb-redo →
1.0.2-1 →
armhf → 2021-01-06 11:17:05
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| libpdb-redo 1.0.2-1 (armhf) Wed, 06 Jan 2021 11:02:30 +0000 |
+==============================================================================+
Package: libpdb-redo
Version: 1.0.2-1
Source Version: 1.0.2-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-aca700ee-209c-4d6c-948c-dfd48dbeba2a' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/libpdb-redo-l4JK7v/resolver-CXb6VM' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.0 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.1 MB]
Fetched 25.1 MB in 12s (2107 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libpdb-redo' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libpdb-redo.git
Please use:
git clone https://salsa.debian.org/med-team/libpdb-redo.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 4169 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main libpdb-redo 1.0.2-1 (dsc) [2251 B]
Get:2 http://172.17.0.1/private bullseye-staging/main libpdb-redo 1.0.2-1 (tar) [4163 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main libpdb-redo 1.0.2-1 (diff) [4660 B]
Fetched 4169 kB in 1s (6467 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libpdb-redo-l4JK7v/libpdb-redo-1.0.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libpdb-redo-l4JK7v' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libcifpp-dev, autoconf-archive, libnewuoa-dev, pkg-config, libgsl-dev, libboost-dev, libboost-iostreams-dev, libzeep-dev, libclipper-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), libcifpp-dev, autoconf-archive, libnewuoa-dev, pkg-config, libgsl-dev, libboost-dev, libboost-iostreams-dev, libzeep-dev, libclipper-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [433 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [514 B]
Fetched 1904 B in 0s (51.8 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev bsdextrautils
cpp-10 debhelper dh-autoreconf dh-strip-nondeterminism dwz fftw-dev fftw2
file g++-10 gcc-10 gcc-10-base gettext gettext-base groff-base icu-devtools
intltool-debian libarchive-zip-perl libasan6 libatomic1
libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0
libboost-dev libboost-iostreams-dev libboost-iostreams1.74-dev
libboost-iostreams1.74.0 libboost-program-options-dev
libboost-program-options1.74-dev libboost-program-options1.74.0
libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev
libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev
libboost-system1.74.0 libboost1.74-dev libbsd0 libcc1-0 libccp4-data
libccp4-dev libccp4c0 libccp4f0 libcifpp-dev libcifpp1 libclipper-dev
libclipper2 libdebhelper-perl libelf1 libevent-core-2.1-7
libevent-pthreads-2.1-7 libfile-stripnondeterminism-perl libgcc-10-dev
libgcc-s1 libgfortran5 libglib2.0-0 libgomp1 libgsl-dev libgsl25
libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu-dev libicu67
libmagic-mgc libmagic1 libmmdb2-0 libmmdb2-dev libnewuoa-dev libnewuoa0
libnl-3-200 libnl-route-3-200 libopenmpi3 libpciaccess0 libpipeline1
libpmix2 libsigsegv2 libstdc++-10-dev libstdc++6 libsub-override-perl
libtool libubsan1 libuchardet0 libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxext6 libxml2 libxnvctrl0 libzeep-dev libzeep5 m4 man-db
ocl-icd-libopencl1 pkg-config po-debconf sensible-utils sfftw-dev sfftw2
Suggested packages:
gnu-standards autoconf-doc gcc-10-locales dh-make mpi-defaults-bin
gcc-10-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc
libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev
libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev
libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev
libboost-numpy1.74-dev libboost-python1.74-dev libboost-random1.74-dev
libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
libclipper-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
icu-doc pciutils libstdc++-10-doc libtool-doc gfortran | fortran95-compiler
gcj-jdk libzeep-doc mrc m4-doc apparmor less www-browser opencl-icd
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs ibverbs-providers libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev bsdextrautils
debhelper dh-autoreconf dh-strip-nondeterminism dwz fftw-dev fftw2 file
gettext gettext-base groff-base icu-devtools intltool-debian
libarchive-zip-perl libboost-date-time-dev libboost-date-time1.74-dev
libboost-date-time1.74.0 libboost-dev libboost-iostreams-dev
libboost-iostreams1.74-dev libboost-iostreams1.74.0
libboost-program-options-dev libboost-program-options1.74-dev
libboost-program-options1.74.0 libboost-regex1.74-dev libboost-regex1.74.0
libboost-serialization1.74-dev libboost-serialization1.74.0
libboost-system-dev libboost-system1.74-dev libboost-system1.74.0
libboost1.74-dev libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0
libcifpp-dev libcifpp1 libclipper-dev libclipper2 libdebhelper-perl libelf1
libevent-core-2.1-7 libevent-pthreads-2.1-7 libfile-stripnondeterminism-perl
libgfortran5 libglib2.0-0 libgsl-dev libgsl25 libgslcblas0 libhwloc-plugins
libhwloc15 libibverbs1 libicu-dev libicu67 libmagic-mgc libmagic1 libmmdb2-0
libmmdb2-dev libnewuoa-dev libnewuoa0 libnl-3-200 libnl-route-3-200
libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libsigsegv2
libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libzeep-dev libzeep5 m4
man-db ocl-icd-libopencl1 pkg-config po-debconf
sbuild-build-depends-main-dummy sensible-utils sfftw-dev sfftw2
The following packages will be upgraded:
cpp-10 g++-10 gcc-10 gcc-10-base libasan6 libatomic1 libcc1-0 libgcc-10-dev
libgcc-s1 libgomp1 libstdc++-10-dev libstdc++6 libubsan1
13 upgraded, 96 newly installed, 0 to remove and 10 not upgraded.
Need to get 87.4 MB of archives.
After this operation, 6225 kB disk space will be freed.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf bsdextrautils armhf 2.36.1-3 [133 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.2.1-3+rpi1 [746 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.2.1-3+rpi1 [201 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.2.1-3+rpi1 [36.0 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.2.1-3+rpi1 [83.7 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.2.1-3+rpi1 [8212 B]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libasan6 armhf 10.2.1-3+rpi1 [1986 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf cpp-10 armhf 10.2.1-3+rpi1 [6687 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.2.1-3+rpi1 [38.3 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf g++-10 armhf 10.2.1-3+rpi1 [7337 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf gcc-10 armhf 10.2.1-3+rpi1 [13.4 MB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libgcc-10-dev armhf 10.2.1-3+rpi1 [683 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-10-dev armhf 10.2.1-3+rpi1 [1752 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.2.1-3+rpi1 [409 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf autoconf-archive all 20190106-2.1 [746 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-3 [170 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-3 [32.4 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-3 [509 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.1 [188 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-2 [162 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20201015-2 [162 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-5 [8288 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-3 [1214 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3.1 [1010 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 67.1-5 [172 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libboost1.74-dev armhf 1.74.0-3 [9532 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libboost-date-time1.74.0 armhf 1.74.0-3 [241 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libboost-serialization1.74.0 armhf 1.74.0-3 [319 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libboost-serialization1.74-dev armhf 1.74.0-3 [388 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libboost-date-time1.74-dev armhf 1.74.0-3 [250 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libboost-date-time-dev armhf 1.74.0.3 [4332 B]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.74.0.3 [4548 B]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex1.74.0 armhf 1.74.0-3 [447 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 67.1-5 [9227 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex1.74-dev armhf 1.74.0-3 [553 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams1.74.0 armhf 1.74.0-3 [259 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams1.74-dev armhf 1.74.0-3 [269 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams-dev armhf 1.74.0.3 [4316 B]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.74.0 armhf 1.74.0-3 [334 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.74-dev armhf 1.74.0-3 [374 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options-dev armhf 1.74.0.3 [4340 B]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.74.0 armhf 1.74.0-3 [241 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.74-dev armhf 1.74.0-3 [242 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libboost-system-dev armhf 1.74.0.3 [4468 B]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libccp4-data all 6.5.1-4 [61.7 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libccp4c0 armhf 6.5.1-4 [73.8 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.1-3+rpi1 [231 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libmmdb2-0 armhf 2.0.5-1 [264 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libccp4f0 armhf 6.5.1-4 [202 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libccp4-dev armhf 6.5.1-4 [42.7 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libcifpp1 armhf 1.0.1-2 [1315 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libcifpp-dev armhf 1.0.1-2 [65.0 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-1 [126 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-1 [56.8 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libhwloc15 armhf 2.4.0+dfsg-3 [121 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libibverbs1 armhf 32.0-1+b1 [52.3 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libpciaccess0 armhf 0.16-1 [51.0 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2.1 [136 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.12-1 [311 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.12-1 [700 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libxnvctrl0 armhf 450.80.02-1 [25.3 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf ocl-icd-libopencl1 armhf 2.2.13-1 [36.5 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-plugins armhf 2.4.0+dfsg-3 [19.5 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libpmix2 armhf 3.2.2~rc1-1 [369 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi3 armhf 4.0.5-7+rpi1 [1582 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf fftw2 armhf 2.1.5-4.2+b2 [244 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf fftw-dev armhf 2.1.5-4.2+b2 [264 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf sfftw2 armhf 2.1.5-4.2+b2 [229 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libclipper2 armhf 2.1.20201109-1 [1069 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libmmdb2-dev armhf 2.0.5-1 [91.9 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf sfftw-dev armhf 2.1.5-4.2+b2 [250 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libclipper-dev armhf 2.1.20201109-1 [82.6 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.4-1 [1182 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libgslcblas0 armhf 2.6+dfsg-2 [79.5 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libgsl25 armhf 2.6+dfsg-2 [753 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libgsl-dev armhf 2.6+dfsg-2 [950 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libnewuoa0 armhf 0.1.1-2 [16.4 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libnewuoa-dev armhf 0.1.1-2 [4916 B]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libzeep5 armhf 5.0.2-3 [554 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libzeep-dev armhf 5.0.2-3 [1018 kB]
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Setting up libgsl25:armhf (2.6+dfsg-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.4-1) ...
No schema files found: doing nothing.
Setting up libboost-iostreams1.74.0:armhf (1.74.0-3) ...
Setting up libboost-program-options1.74.0:armhf (1.74.0-3) ...
Setting up libdebhelper-perl (13.3.1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-3) ...
Setting up autoconf-archive (20190106-2.1) ...
Setting up file (1:5.39-3) ...
Setting up libccp4-data (6.5.1-4) ...
Setting up libnewuoa0 (0.1.1-2) ...
Setting up libgomp1:armhf (10.2.1-3+rpi1) ...
Setting up libasan6:armhf (10.2.1-3+rpi1) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libx11-data (2:1.6.12-1) ...
Setting up libsigsegv2:armhf (2.12-3) ...
Setting up libboost-regex1.74.0:armhf (1.74.0-3) ...
Setting up libhwloc15:armhf (2.4.0+dfsg-3) ...
Setting up libevent-core-2.1-7:armhf (2.1.12-stable-1) ...
Setting up libatomic1:armhf (10.2.1-3+rpi1) ...
Setting up libmmdb2-dev (2.0.5-1) ...
Setting up autopoint (0.21-3) ...
Setting up icu-devtools (67.1-5) ...
Setting up libzeep5 (5.0.2-3) ...
Setting up pkg-config (0.29.2-1) ...
Setting up libccp4c0:armhf (6.5.1-4) ...
Setting up libgfortran5:armhf (10.2.1-3+rpi1) ...
Setting up libubsan1:armhf (10.2.1-3+rpi1) ...
Setting up libboost-serialization1.74.0:armhf (1.74.0-3) ...
Setting up libcifpp1 (1.0.1-2) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up ocl-icd-libopencl1:armhf (2.2.13-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libnl-3-200:armhf (3.4.0-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libboost-date-time1.74.0:armhf (1.74.0-3) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libelf1:armhf (0.182-2) ...
Setting up libicu-dev:armhf (67.1-5) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up libcc1-0:armhf (10.2.1-3+rpi1) ...
Setting up cpp-10 (10.2.1-3+rpi1) ...
Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-1) ...
Setting up libccp4f0:armhf (6.5.1-4) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libxcb1:armhf (1.14-2.1) ...
Setting up gettext (0.21-3) ...
Setting up libgsl-dev (2.6+dfsg-2) ...
Setting up libccp4-dev:armhf (6.5.1-4) ...
Setting up libtool (2.4.6-14) ...
Setting up libnewuoa-dev (0.1.1-2) ...
Setting up libgcc-10-dev:armhf (10.2.1-3+rpi1) ...
Setting up m4 (1.4.18-4) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up gcc-10 (10.2.1-3+rpi1) ...
Setting up autoconf (2.69-14) ...
Setting up libcifpp-dev (1.0.1-2) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13+20201015-2) ...
Setting up groff-base (1.22.4-5) ...
Setting up libx11-6:armhf (2:1.6.12-1) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libibverbs1:armhf (32.0-1+b1) ...
Setting up libstdc++-10-dev:armhf (10.2.1-3+rpi1) ...
Setting up libboost1.74-dev:armhf (1.74.0-3) ...
Setting up g++-10 (10.2.1-3+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:armhf (2:1.3.3-1.1) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libboost-program-options1.74-dev:armhf (1.74.0-3) ...
Setting up libxnvctrl0:armhf (450.80.02-1) ...
Setting up libboost-program-options-dev:armhf (1.74.0.3) ...
Setting up libboost-system1.74-dev:armhf (1.74.0-3) ...
Setting up libboost-serialization1.74-dev:armhf (1.74.0-3) ...
Setting up libboost-regex1.74-dev:armhf (1.74.0-3) ...
Setting up libboost-dev:armhf (1.74.0.3) ...
Setting up libboost-system-dev:armhf (1.74.0.3) ...
Setting up libhwloc-plugins:armhf (2.4.0+dfsg-3) ...
Setting up libboost-iostreams1.74-dev:armhf (1.74.0-3) ...
Setting up libboost-date-time1.74-dev:armhf (1.74.0-3) ...
Setting up libboost-date-time-dev:armhf (1.74.0.3) ...
Setting up libpmix2:armhf (3.2.2~rc1-1) ...
Setting up libopenmpi3:armhf (4.0.5-7+rpi1) ...
Setting up sfftw2 (2.1.5-4.2+b2) ...
Setting up libboost-iostreams-dev:armhf (1.74.0.3) ...
Setting up fftw2 (2.1.5-4.2+b2) ...
Setting up sfftw-dev (2.1.5-4.2+b2) ...
Setting up libzeep-dev (5.0.2-3) ...
Setting up libclipper2:armhf (2.1.20201109-1) ...
Setting up fftw-dev (2.1.5-4.2+b2) ...
Setting up libclipper-dev:armhf (2.1.20201109-1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.3.1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-6+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.35.1-6+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.1-3+rpi1 gcc-10_10.2.1-3+rpi1 libc6-dev_2.31-6+rpi1 libstdc++-10-dev_10.2.1-3+rpi1 libstdc++6_10.2.1-3+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1
Package versions: adduser_3.118 apt_2.1.12+deb11u1 autoconf_2.69-14 autoconf-archive_20190106-2.1 automake_1:1.16.2-4 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1-1 binutils_2.35.1-6+rpi1 binutils-arm-linux-gnueabihf_2.35.1-6+rpi1 binutils-common_2.35.1-6+rpi1 bsdextrautils_2.36.1-3 bsdutils_1:2.36.1-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.1-3+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.74 debhelper_13.3.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fftw-dev_2.1.5-4.2+b2 fftw2_2.1.5-4.2+b2 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.1-3+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.1-3+rpi1 gcc-10-base_10.2.1-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-5+rpi1 gcc-9-base_9.3.0-19+rpi1 gettext_0.21-3 gettext-base_0.21-3 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 icu-devtools_67.1-5 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-9 libapt-pkg6.0_2.1.12+deb11u1 libarchive-zip-perl_1.68-1 libasan6_10.2.1-3+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-3+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-1 libaudit1_1:3.0-1 libbinutils_2.35.1-6+rpi1 libblkid1_2.36.1-3 libboost-date-time-dev_1.74.0.3 libboost-date-time1.74-dev_1.74.0-3 libboost-date-time1.74.0_1.74.0-3 libboost-dev_1.74.0.3 libboost-iostreams-dev_1.74.0.3 libboost-iostreams1.74-dev_1.74.0-3 libboost-iostreams1.74.0_1.74.0-3 libboost-program-options-dev_1.74.0.3 libboost-program-options1.74-dev_1.74.0-3 libboost-program-options1.74.0_1.74.0-3 libboost-regex1.74-dev_1.74.0-3 libboost-regex1.74.0_1.74.0-3 libboost-serialization1.74-dev_1.74.0-3 libboost-serialization1.74.0_1.74.0-3 libboost-system-dev_1.74.0.3 libboost-system1.74-dev_1.74.0-3 libboost-system1.74.0_1.74.0-3 libboost1.74-dev_1.74.0-3 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-6+rpi1 libc-dev-bin_2.31-6+rpi1 libc6_2.31-6+rpi1 libc6-dev_2.31-6+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-3+rpi1 libccp4-data_6.5.1-4 libccp4-dev_6.5.1-4 libccp4c0_6.5.1-4 libccp4f0_6.5.1-4 libcifpp-dev_1.0.1-2 libcifpp1_1.0.1-2 libclipper-dev_2.1.20201109-1 libclipper2_2.1.20201109-1 libcom-err2_1.45.6-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-6+rpi1 libctf0_2.35.1-6+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255+b1 libdebhelper-perl_13.3.1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-2 libevent-core-2.1-7_2.1.12-stable-1 libevent-pthreads-2.1-7_2.1.12-stable-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.1-3+rpi1 libgcc-s1_10.2.1-3+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.1-3+rpi1 libglib2.0-0_2.66.4-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.6.15-4 libgomp1_10.2.1-3+rpi1 libgpg-error0_1.38-2 libgsl-dev_2.6+dfsg-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libgssapi-krb5-2_1.18.3-4 libhogweed6_3.6-2 libhwloc-plugins_2.4.0+dfsg-3 libhwloc15_2.4.0+dfsg-3 libibverbs1_32.0-1+b1 libicu-dev_67.1-5 libicu67_67.1-5 libidn2-0_2.3.0-4 libisl23_0.23-1 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-3 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-1+rpi1 liblzma5_5.2.4-1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmmdb2-0_2.0.5-1 libmmdb2-dev_2.0.5-1 libmount1_2.36.1-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-1 libnettle8_3.6-2 libnewuoa-dev_0.1.1-2 libnewuoa0_0.1.1-2 libnl-3-200_3.4.0-1 libnl-route-3-200_3.4.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libopenmpi3_4.0.5-7+rpi1 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.16-1 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.0-6 libpipeline1_1.5.3-1 libpmix2_3.2.2~rc1-1 libreadline8_8.1-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-3 libsmartcols1_2.36.1-3 libsqlite3-0_3.34.0-1 libss2_1.45.6-1 libssl1.1_1.1.1i-1 libstdc++-10-dev_10.2.1-3+rpi1 libstdc++6_10.2.1-3+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-4+rpi1 libtasn1-6_4.16.0-2 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.1-3+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-4+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-3 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2.1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1.1 libxml2_2.9.10+dfsg-6.3 libxnvctrl0_450.80.02-1 libzeep-dev_5.0.2-3 libzeep5_5.0.2-3 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-3 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 ocl-icd-libopencl1_2.2.13-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sfftw-dev_2.1.5-4.2+b2 sfftw2_2.1.5-4.2+b2 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tzdata_2020e-1 util-linux_2.36.1-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: libpdb-redo
Binary: libpdb-redo-dev, libpdb-redo1
Architecture: any
Version: 1.0.2-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Maarten L. Hekkelman <maarten@hekkelman.com>
Homepage: https://github.com/PDB-REDO/libpdb-redo
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/libpdb-redo
Vcs-Git: https://salsa.debian.org/med-team/libpdb-redo.git
Testsuite: autopkgtest
Testsuite-Triggers: @builddeps@, mrc
Build-Depends: debhelper-compat (= 13), libcifpp-dev, autoconf-archive, libnewuoa-dev, pkg-config, libgsl-dev, libboost-dev, libboost-iostreams-dev, libzeep-dev, libclipper-dev
Package-List:
libpdb-redo-dev deb libdevel optional arch=any
libpdb-redo1 deb libs optional arch=any
Checksums-Sha1:
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6c0d0face1ce451cb706873421da2925458e9bef 4660 libpdb-redo_1.0.2-1.debian.tar.xz
Checksums-Sha256:
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079c6c713758874cbab35eed8e126dc5bd2c0c5c896290455bda5f14e4c072d8 4660 libpdb-redo_1.0.2-1.debian.tar.xz
Files:
d6f80bebff8fb8553bd2801b730583d0 4162557 libpdb-redo_1.0.2.orig.tar.gz
0ee3ee3a7d621e64e4dfc329d89847cb 4660 libpdb-redo_1.0.2-1.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.dv6ntFwo/trustedkeys.kbx': General error
gpgv: Signature made Mon Jan 4 09:07:01 2021 UTC
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libpdb-redo_1.0.2-1.dsc
dpkg-source: info: extracting libpdb-redo in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libpdb-redo_1.0.2.orig.tar.gz
dpkg-source: info: unpacking libpdb-redo_1.0.2-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying no-data-update.patch
dpkg-source: info: applying unit-test.patch
dpkg-source: info: applying configure.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/buildd
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-aca700ee-209c-4d6c-948c-dfd48dbeba2a
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c12376
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package libpdb-redo
dpkg-buildpackage: info: source version 1.0.2-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
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dh_autoreconf -a
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac,
libtoolize: and rerunning libtoolize and aclocal.
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debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-shared --disable-static
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-shared --disable-static
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make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p obj
>> src/AtomShape.cpp
>> src/BondMap.cpp
>> src/ClipperWrapper.cpp
>> src/DistanceMap.cpp
>> src/MapMaker.cpp
>> src/Minimizer.cpp
In file included from /usr/include/c++/10/vector:72,
from /usr/include/cif++/CifUtils.hpp:31,
from src/DistanceMap.cpp:32:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {clipper::RTop_orth}; _Tp = clipper::RTop_orth; _Alloc = std::allocator<clipper::RTop_orth>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::RTop_orth>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {clipper::RTop_orth}; _Tp = clipper::RTop_orth; _Alloc = std::allocator<clipper::RTop_orth>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<clipper::RTop_orth*, std::vector<clipper::RTop_orth> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> src/Ramachandran.cpp
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from src/BondMap.cpp:30:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >; _Distance = int; _Tp = mmcif::{anonymous}::CompoundBondInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mmcif::createBondInfoFile(const std::filesystem::__cxx11::path&, const std::filesystem::__cxx11::path&)::<lambda(mmcif::{anonymous}::CompoundBondInfo&, mmcif::{anonymous}::CompoundBondInfo&)> >]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from src/BondMap.cpp:30:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<mmcif::createBondInfoFile(const std::filesystem::__cxx11::path&, const std::filesystem::__cxx11::path&)::<lambda(mmcif::{anonymous}::CompoundBondInfo&, mmcif::{anonymous}::CompoundBondInfo&)> >]’:
/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1819 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mmcif::createBondInfoFile(const std::filesystem::__cxx11::path&, const std::filesystem::__cxx11::path&)::<lambda(mmcif::{anonymous}::CompoundBondInfo&, mmcif::{anonymous}::CompoundBondInfo&)> >]’:
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mmcif::createBondInfoFile(const std::filesystem::__cxx11::path&, const std::filesystem::__cxx11::path&)::<lambda(mmcif::{anonymous}::CompoundBondInfo&, mmcif::{anonymous}::CompoundBondInfo&)> >]’:
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> src/ResolutionCalculator.cpp
/usr/include/c++/10/bits/stl_algo.h: In function ‘void mmcif::createBondInfoFile(const std::filesystem::__cxx11::path&, const std::filesystem::__cxx11::path&)’:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::{anonymous}::CompoundBondInfo*, std::vector<mmcif::{anonymous}::CompoundBondInfo> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
src/MapMaker.cpp: In member function ‘void mmcif::MapMaker<FTYPE>::fixMTZ() [with FTYPE = float]’:
src/MapMaker.cpp:1033:8: note: parameter passing for argument of type ‘clipper::datatypes::F_phi<float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1033 | auto mFo = mFbData[ih] - mFdData[ih];
| ^~~
>> src/Restraints.cpp
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/regex:38,
from src/Minimizer.cpp:35:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {TransPeptideRestraint}; _Tp = TransPeptideRestraint; _Alloc = std::allocator<TransPeptideRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<TransPeptideRestraint>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {PlanarityRestraint}; _Tp = PlanarityRestraint; _Alloc = std::allocator<PlanarityRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PlanarityRestraint>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {PlanarityRestraint}; _Tp = PlanarityRestraint; _Alloc = std::allocator<PlanarityRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PlanarityRestraint*, std::vector<PlanarityRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {unsigned int, unsigned int, float&, float&}; _Tp = BondRestraint; _Alloc = std::allocator<BondRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<BondRestraint>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {unsigned int, unsigned int, float&, float&}; _Tp = BondRestraint; _Alloc = std::allocator<BondRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BondRestraint*, std::vector<BondRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {unsigned int, unsigned int, unsigned int, float&, float&}; _Tp = AngleRestraint; _Alloc = std::allocator<AngleRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AngleRestraint>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {unsigned int, unsigned int, unsigned int, float&, float&}; _Tp = AngleRestraint; _Alloc = std::allocator<AngleRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AngleRestraint*, std::vector<AngleRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {unsigned int, unsigned int, unsigned int, unsigned int, float}; _Tp = ChiralVolumeRestraint; _Alloc = std::allocator<ChiralVolumeRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<ChiralVolumeRestraint>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {unsigned int&, unsigned int&, double&, double}; _Tp = NonBondedContactRestraint; _Alloc = std::allocator<NonBondedContactRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<NonBondedContactRestraint>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {unsigned int, unsigned int, unsigned int, unsigned int, float&}; _Tp = ChiralVolumeRestraint; _Alloc = std::allocator<ChiralVolumeRestraint>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<ChiralVolumeRestraint>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void Minimizer::addLinkRestraints(const mmcif::Monomer&, const mmcif::Monomer&, const mmcif::Link&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ChiralVolumeRestraint*, std::vector<ChiralVolumeRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> src/SkipList.cpp
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<unsigned int, double>}; _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<unsigned int, double> >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/ext/slist:47,
from /usr/include/boost/algorithm/string/std/slist_traits.hpp:16,
from /usr/include/boost/algorithm/string/std_containers_traits.hpp:23,
from /usr/include/boost/algorithm/string.hpp:18,
from src/Restraints.cpp:36:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/c++/10/functional:62,
from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
from /usr/include/c++/10/algorithm:74,
from /usr/include/c++/10/ext/slist:47,
from /usr/include/boost/algorithm/string/std/slist_traits.hpp:16,
from /usr/include/boost/algorithm/string/std_containers_traits.hpp:23,
from /usr/include/boost/algorithm/string.hpp:18,
from src/Restraints.cpp:36:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<T> clipper::Matrix<T>::eigen(bool) [with T = double]’:
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/boost/format.hpp:17,
from src/MapMaker.cpp:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /usr/include/boost/format.hpp:17,
from src/MapMaker.cpp:33:
/usr/include/c++/10/bits/stl_vector.h: In constructor ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’:
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/boost/format.hpp:17,
from src/MapMaker.cpp:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {clipper::Atom}; _Tp = clipper::Atom; _Alloc = std::allocator<clipper::Atom>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::Atom>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {clipper::Atom}; _Tp = clipper::Atom; _Alloc = std::allocator<clipper::Atom>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<clipper::Atom*, std::vector<clipper::Atom> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> src/Statistics.cpp
/usr/include/c++/10/bits/vector.tcc: In constructor ‘Minimizer::Minimizer(const mmcif::Polymer&, int, int, const mmcif::BondMap&, const XMap&, float, float)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TransPeptideRestraint*, std::vector<TransPeptideRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ChiralVolumeRestraint*, std::vector<ChiralVolumeRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<NonBondedContactRestraint*, std::vector<NonBondedContactRestraint> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/bits/stl_algobase.h:64,
from /usr/include/c++/10/bits/char_traits.h:39,
from /usr/include/c++/10/ios:40,
from /usr/include/c++/10/istream:38,
from /usr/include/c++/10/fstream:38,
from src/Statistics.cpp:29:
/usr/include/c++/10/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type = double; typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type = double]’:
src/Statistics.cpp:610:80: required from here
/usr/include/c++/10/bits/stl_pair.h:567:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
567 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
>> src/Symmetry-2.cpp
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/functional:65,
from /usr/include/cif++/Point.hpp:29,
from /usr/include/cif++/Structure.hpp:32,
from src/Statistics.cpp:32:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/functional:65,
from /usr/include/cif++/Point.hpp:29,
from /usr/include/cif++/Structure.hpp:32,
from src/Statistics.cpp:32:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/cif++/Point.hpp:29,
from /usr/include/cif++/Structure.hpp:32,
from src/Statistics.cpp:32:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {mmcif::ResidueStatistics}; _Tp = mmcif::ResidueStatistics; _Alloc = std::allocator<mmcif::ResidueStatistics>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<mmcif::ResidueStatistics>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const clipper::Coord_grid&, double&}; _Tp = mmcif::AtomGridData; _Alloc = std::allocator<mmcif::AtomGridData>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<mmcif::AtomGridData>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void mmcif::StatsCollector::sumDensity(std::vector<mmcif::AtomData>&, mmcif::StatsCollector::GridPtDataMap&, std::map<std::__cxx11::basic_string<char>, std::vector<double> >&) const’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::AtomGridData*, std::vector<mmcif::AtomGridData> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {mmcif::Atom&, float&}; _Tp = mmcif::AtomData; _Alloc = std::allocator<mmcif::AtomData>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<mmcif::AtomData>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {mmcif::Atom&, float&}; _Tp = mmcif::AtomData; _Alloc = std::allocator<mmcif::AtomData>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::AtomData*, std::vector<mmcif::AtomData> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/functional:65,
from /usr/include/cif++/Point.hpp:29,
from /usr/include/cif++/Structure.hpp:32,
from src/Statistics.cpp:32:
/usr/include/c++/10/bits/stl_algo.h: In member function ‘void mmcif::StatsCollector::initialize()’:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/cif++/Point.hpp:29,
from /usr/include/cif++/Structure.hpp:32,
from src/Statistics.cpp:32:
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<mmcif::ResidueStatistics> mmcif::StatsCollector::collect(const std::vector<std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, mmcif::BoundingBox&, bool) const’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::ResidueStatistics*, std::vector<mmcif::ResidueStatistics> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mmcif::ResidueStatistics*, std::vector<mmcif::ResidueStatistics> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /usr/include/cif++/CifUtils.hpp:31,
from src/Symmetry-2.cpp:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {clipper::Coord_orth}; _Tp = clipper::Coord_orth; _Alloc = std::allocator<clipper::Coord_orth>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::Coord_orth>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function ‘clipper::Coord_orth CalculateOffsetForCell(const mmcif::Structure&, const clipper::Spacegroup&, const clipper::Cell&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<clipper::Coord_orth*, std::vector<clipper::Coord_orth> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {clipper::RTop_orth}; _Tp = clipper::RTop_orth; _Alloc = std::allocator<clipper::RTop_orth>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::RTop_orth>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<clipper::RTop_orth>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {clipper::RTop_orth}; _Tp = clipper::RTop_orth; _Alloc = std::allocator<clipper::RTop_orth>]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<clipper::RTop_orth*, std::vector<clipper::RTop_orth> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/sh /<<PKGBUILDDIR>>/libtool --silent --tag=CXX --mode=link g++ -std=c++17 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wall -Wno-multichar -I include -O2 -DDATADIR='"/usr/share/libpdb-redo"' -DNDEBUG -Wl,-z,relro -Wl,-z,now -pthread -version-info 1:0:0 -o libpdb-redo.la -rpath /usr/lib/arm-linux-gnueabihf obj/AtomShape.lo obj/BondMap.lo obj/ClipperWrapper.lo obj/DistanceMap.lo obj/MapMaker.lo obj/Minimizer.lo obj/Ramachandran.lo obj/ResolutionCalculator.lo obj/Restraints.lo obj/SkipList.lo obj/Statistics.lo obj/Symmetry-2.lo -lcifpp -lzeep -lgsl -lgslcblas -lm -lnewuoa -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lboost_iostreams -lm
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make test
make[2]: Entering directory '/<<PKGBUILDDIR>>'
>> test/unit-test.cpp
In file included from /usr/include/c++/10/vector:72,
from /usr/include/c++/10/functional:62,
from /usr/include/boost/smart_ptr/detail/shared_count.hpp:37,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /usr/include/boost/test/execution_monitor.hpp:24,
from /usr/include/boost/test/impl/compiler_log_formatter.ipp:22,
from /usr/include/boost/test/included/unit_test.hpp:18,
from test/unit-test.cpp:28:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {TestResidue}; _Tp = TestResidue; _Alloc = std::allocator<TestResidue>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<TestResidue>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<TestResidue>::iterator’ changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function ‘void stats_1::test_method()’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TestResidue*, std::vector<TestResidue> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>> building unit-test
g++ -std=c++17 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wall -Wno-multichar -I include -O2 -DDATADIR='"/usr/share/libpdb-redo"' -DNDEBUG -Wl,-z,relro -Wl,-z,now -pthread -o test/unit-test obj/unit-test.o -L.libs -lpdb-redo -lcifpp -lzeep -lgsl -lgslcblas -lm -lnewuoa -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lboost_iostreams -lm
cd test; BOND_INFO_FILE=/<<PKGBUILDDIR>>/rsrc/bond-info.bin.gz LD_LIBRARY_PATH=../.libs ./unit-test
Running 7 test cases...
Missing bond information for compound U_K
Missing information for compound 'U_K'
Missing bond information for compound U_K
[1;32;49m*** No errors detected
[0;39;49mmake[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
install -d /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
/bin/sh /<<PKGBUILDDIR>>/libtool --mode=install install libpdb-redo.la /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
libtool: install: install .libs/libpdb-redo.so.1.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libpdb-redo.so.1.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libpdb-redo.so.1.0.0 libpdb-redo.so.1 || { rm -f libpdb-redo.so.1 && ln -s libpdb-redo.so.1.0.0 libpdb-redo.so.1; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libpdb-redo.so.1.0.0 libpdb-redo.so || { rm -f libpdb-redo.so && ln -s libpdb-redo.so.1.0.0 libpdb-redo.so; }; })
libtool: install: install .libs/libpdb-redo.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libpdb-redo.la
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
install -d /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo
for f in AtomShape.hpp BondMap.hpp ClipperWrapper.hpp DistanceMap.hpp MapMaker.hpp Minimizer.hpp Ramachandran.hpp ResolutionCalculator.hpp Restraints.hpp SkipList.hpp Statistics.hpp Symmetry-2.hpp; do install include/pdb-redo/$f /<<PKGBUILDDIR>>/debian/tmp/usr/include/pdb-redo/$f; done
install -d /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig
install -m 644 libpdb-redo.pc /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/libpdb-redo.pc
install -d /<<PKGBUILDDIR>>/debian/tmp/usr/share/libpdb-redo
install -m 644 rsrc/bond-info.bin.gz /<<PKGBUILDDIR>>/debian/tmp/usr/share/libpdb-redo/bond-info.bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libpdb-redo1/usr/lib/arm-linux-gnueabihf/libpdb-redo.so.1.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libpdb-redo-dev' in '../libpdb-redo-dev_1.0.2-1_armhf.deb'.
dpkg-deb: building package 'libpdb-redo1-dbgsym' in '../libpdb-redo1-dbgsym_1.0.2-1_armhf.deb'.
dpkg-deb: building package 'libpdb-redo1' in '../libpdb-redo1_1.0.2-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../libpdb-redo_1.0.2-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-01-06T11:16:56Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libpdb-redo_1.0.2-1_armhf.changes:
----------------------------------
Format: 1.8
Date: Mon, 04 Jan 2021 08:35:24 +0100
Source: libpdb-redo
Binary: libpdb-redo-dev libpdb-redo1 libpdb-redo1-dbgsym
Architecture: armhf
Version: 1.0.2-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Maarten L. Hekkelman <maarten@hekkelman.com>
Description:
libpdb-redo-dev - Development files for libpdb-redo
libpdb-redo1 - Library file for libpdb-redo
Closes: 978057
Changes:
libpdb-redo (1.0.2-1) unstable; urgency=medium
.
* New upstream version (includes patch from 1.0.1-2)
* Fixes pkg-config problem for cross-building
Closes: #978057
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586adb3adfa71684b66b9e6b3b03e391 7348 libs optional libpdb-redo_1.0.2-1_armhf.buildinfo
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: libpdb-redo
Binary: libpdb-redo-dev libpdb-redo1 libpdb-redo1-dbgsym
Architecture: armhf
Version: 1.0.2-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Wed, 06 Jan 2021 11:16:55 +0000
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libpdb-redo-dev_1.0.2-1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 624524 bytes: control archive=1232 bytes.
538 bytes, 16 lines control
1426 bytes, 19 lines md5sums
Package: libpdb-redo-dev
Source: libpdb-redo
Version: 1.0.2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1040
Depends: libpdb-redo1 (= 1.0.2-1)
Section: libdevel
Priority: optional
Homepage: https://github.com/PDB-REDO/libpdb-redo
Description: Development files for libpdb-redo
This library contains shared code for the various programs
in the project PDB-REDO.
.
This specific package contains all files needed to develop new
software using libpdb-redo.
drwxr-xr-x root/root 0 2021-01-04 07:35 ./
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/include/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/include/pdb-redo/
-rw-r--r-- root/root 2130 2021-01-04 07:35 ./usr/include/pdb-redo/AtomShape.hpp
-rw-r--r-- root/root 3137 2021-01-04 07:35 ./usr/include/pdb-redo/BondMap.hpp
-rw-r--r-- root/root 1804 2021-01-04 07:35 ./usr/include/pdb-redo/ClipperWrapper.hpp
-rw-r--r-- root/root 2881 2021-01-04 07:35 ./usr/include/pdb-redo/DistanceMap.hpp
-rw-r--r-- root/root 5521 2021-01-04 07:35 ./usr/include/pdb-redo/MapMaker.hpp
-rw-r--r-- root/root 4820 2021-01-04 07:35 ./usr/include/pdb-redo/Minimizer.hpp
-rw-r--r-- root/root 1773 2021-01-04 07:35 ./usr/include/pdb-redo/Ramachandran.hpp
-rw-r--r-- root/root 2040 2021-01-04 07:35 ./usr/include/pdb-redo/ResolutionCalculator.hpp
-rw-r--r-- root/root 5875 2021-01-04 07:35 ./usr/include/pdb-redo/Restraints.hpp
-rw-r--r-- root/root 2103 2021-01-04 07:35 ./usr/include/pdb-redo/SkipList.hpp
-rw-r--r-- root/root 4475 2021-01-04 07:35 ./usr/include/pdb-redo/Statistics.hpp
-rw-r--r-- root/root 5491 2021-01-04 07:35 ./usr/include/pdb-redo/Symmetry-2.hpp
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2021-01-04 07:35 ./usr/lib/arm-linux-gnueabihf/libpdb-redo.so -> libpdb-redo.so.1.0.0
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 354 2021-01-04 07:35 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libpdb-redo.pc
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/share/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/share/doc/libpdb-redo-dev/
-rw-r--r-- root/root 389 2021-01-04 07:35 ./usr/share/doc/libpdb-redo-dev/changelog.Debian.gz
-rw-r--r-- root/root 80 2020-12-15 15:04 ./usr/share/doc/libpdb-redo-dev/changelog.gz
-rw-r--r-- root/root 3497 2021-01-04 07:35 ./usr/share/doc/libpdb-redo-dev/copyright
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/share/doc/libpdb-redo-dev/examples/
-rw-r--r-- root/root 993520 2020-12-15 15:04 ./usr/share/doc/libpdb-redo-dev/examples/1cbs_map.mtz
-rw-r--r-- root/root 362 2021-01-04 07:35 ./usr/share/doc/libpdb-redo-dev/examples/GNUmakefile
-rw-r--r-- root/root 952 2020-12-15 15:04 ./usr/share/doc/libpdb-redo-dev/examples/example.cpp
libpdb-redo1-dbgsym_1.0.2-1_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 5341212 bytes: control archive=540 bytes.
390 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libpdb-redo1-dbgsym
Source: libpdb-redo
Version: 1.0.2-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5438
Depends: libpdb-redo1 (= 1.0.2-1)
Section: debug
Priority: optional
Description: debug symbols for libpdb-redo1
Build-Ids: 53588c6e489947f626ddbce8968ae0d3513512d0
drwxr-xr-x root/root 0 2021-01-04 07:35 ./
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/lib/debug/.build-id/53/
-rw-r--r-- root/root 5557480 2021-01-04 07:35 ./usr/lib/debug/.build-id/53/588c6e489947f626ddbce8968ae0d3513512d0.debug
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/share/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-01-04 07:35 ./usr/share/doc/libpdb-redo1-dbgsym -> libpdb-redo1
libpdb-redo1_1.0.2-1_armhf.deb
------------------------------
new Debian package, version 2.0.
size 3162884 bytes: control archive=936 bytes.
676 bytes, 15 lines control
379 bytes, 5 lines md5sums
38 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libpdb-redo1
Source: libpdb-redo
Version: 1.0.2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3632
Depends: libboost-iostreams1.74.0 (>= 1.74.0), libc6 (>= 2.29), libcifpp1 (>= 1.0.1), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.5), libgsl25 (>= 2.6), libnewuoa0 (>= 0.1.1), libstdc++6 (>= 9), libzeep5 (>= 5.0.2)
Section: libs
Priority: optional
Homepage: https://github.com/PDB-REDO/libpdb-redo
Description: Library file for libpdb-redo
This library contains shared code for the various programs
in the project PDB-REDO.
.
This package contains the shared library for libpdb-redo.
drwxr-xr-x root/root 0 2021-01-04 07:35 ./
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2021-01-04 07:35 ./usr/lib/arm-linux-gnueabihf/libpdb-redo.so.1 -> libpdb-redo.so.1.0.0
-rw-r--r-- root/root 751520 2021-01-04 07:35 ./usr/lib/arm-linux-gnueabihf/libpdb-redo.so.1.0.0
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/share/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/share/doc/libpdb-redo1/
-rw-r--r-- root/root 389 2021-01-04 07:35 ./usr/share/doc/libpdb-redo1/changelog.Debian.gz
-rw-r--r-- root/root 80 2020-12-15 15:04 ./usr/share/doc/libpdb-redo1/changelog.gz
-rw-r--r-- root/root 3497 2021-01-04 07:35 ./usr/share/doc/libpdb-redo1/copyright
drwxr-xr-x root/root 0 2021-01-04 07:35 ./usr/share/libpdb-redo/
-rw-r--r-- root/root 2948417 2021-01-04 07:35 ./usr/share/libpdb-redo/bond-info.bin
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 128404
Build-Time: 303
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 536
Job: libpdb-redo_1.0.2-1
Machine Architecture: armhf
Package: libpdb-redo
Package-Time: 866
Source-Version: 1.0.2-1
Space: 128404
Status: successful
Version: 1.0.2-1
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Finished at 2021-01-06T11:16:56Z
Build needed 00:14:26, 128404k disk space