libmaus2 →
2.0.813+ds-1 →
armhf → 2023-01-23 13:36:41
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| libmaus2 2.0.813+ds-1 (armhf) Mon, 23 Jan 2023 09:30:23 +0000 |
+==============================================================================+
Package: libmaus2
Version: 2.0.813+ds-1
Source Version: 2.0.813+ds-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-62d33076-bca8-4567-8bd3-d3940a625b6b' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.6 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.4 MB]
Fetched 28.0 MB in 28s (1002 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libmaus2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libmaus2.git
Please use:
git clone https://salsa.debian.org/med-team/libmaus2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1664 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main libmaus2 2.0.813+ds-1 (dsc) [2315 B]
Get:2 http://172.17.4.1/private bookworm-staging/main libmaus2 2.0.813+ds-1 (tar) [1656 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main libmaus2 2.0.813+ds-1 (diff) [6180 B]
Fetched 1664 kB in 0s (6443 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libmaus2-fMobW1/libmaus2-2.0.813+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libmaus2-fMobW1' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-jAB4TB/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-jAB4TB/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-jAB4TB/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jAB4TB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-jAB4TB/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-jAB4TB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jAB4TB/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jAB4TB/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2653 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 84 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jAB4TB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13011 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkg-config, zlib1g-dev
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkg-config, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-libmaus2-dummy' in '/<<BUILDDIR>>/resolver-jAB4TB/apt_archive/sbuild-build-depends-libmaus2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libmaus2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jAB4TB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-jAB4TB/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-jAB4TB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jAB4TB/apt_archive ./ Sources [536 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jAB4TB/apt_archive ./ Packages [615 B]
Fetched 2484 B in 1s (3185 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libmaus2 build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libassuan-dev
libboost-atomic-dev libboost-atomic1.74-dev libboost-atomic1.74.0
libboost1.74-dev libdebhelper-perl libelf1 libfile-stripnondeterminism-perl
libgmp-dev libgmpxx4ldbl libgpg-error-dev libgpgme-dev libgpgme11 libicu72
libmagic-mgc libmagic1 libpipeline1 libpkgconf3 libsecrecy-dev
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db nettle-dev
pkg-config pkgconf pkgconf-bin po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libboost1.74-doc
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
gmp-doc libgmp10-doc libmpfr-dev libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libassuan-dev
libboost-atomic-dev libboost-atomic1.74-dev libboost-atomic1.74.0
libboost1.74-dev libdebhelper-perl libelf1 libfile-stripnondeterminism-perl
libgmp-dev libgmpxx4ldbl libgpg-error-dev libgpgme-dev libgpgme11 libicu72
libmagic-mgc libmagic1 libpipeline1 libpkgconf3 libsecrecy-dev
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db nettle-dev
pkg-config pkgconf pkgconf-bin po-debconf
sbuild-build-depends-libmaus2-dummy zlib1g-dev
0 upgraded, 48 newly installed, 0 to remove and 84 not upgraded.
Need to get 32.0 MB of archives.
After this operation, 225 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jAB4TB/apt_archive ./ sbuild-build-depends-libmaus2-dummy 0.invalid.0 [904 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.2-1 [1342 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-2 [256 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf d-shlibs all 0.104 [18.6 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libgpg-error-dev armhf 1.46-1 [119 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libassuan-dev armhf 2.5.5-5 [102 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-18.1 [9509 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libboost-atomic1.74.0 armhf 1.74.0-18.1 [220 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libboost-atomic1.74-dev armhf 1.74.0-18.1 [221 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libboost-atomic-dev armhf 1.74.0.3+b4 [4912 B]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libgmpxx4ldbl armhf 2:6.2.1+dfsg1-1.1 [338 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libgmp-dev armhf 2:6.2.1+dfsg1-1.1 [582 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libgpgme11 armhf 1.18.0-3 [278 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libgpgme-dev armhf 1.18.0-3 [473 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libpkgconf3 armhf 1.8.0-12 [31.0 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf pkgconf-bin armhf 1.8.0-12 [27.6 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf pkgconf armhf 1.8.0-12 [25.6 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 1.8.0-12 [13.5 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf nettle-dev armhf 3.8.1-2 [1235 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libsecrecy-dev armhf 0.0.5+ds-2 [21.3 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
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Unpacking sbuild-build-depends-libmaus2-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libboost1.74-dev:armhf (1.74.0-18.1) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up libboost-atomic1.74.0:armhf (1.74.0-18.1) ...
Setting up bsdextrautils (2.38.1-4) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:armhf (1:5.41-4) ...
Setting up gettext-base (0.21-10) ...
Setting up m4 (1.4.19-2) ...
Setting up file (1:5.41-4) ...
Setting up libgpgme11:armhf (1.18.0-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpkgconf3:armhf (1.8.0-12) ...
Setting up libgmpxx4ldbl:armhf (2:6.2.1+dfsg1-1.1) ...
Setting up libgpg-error-dev (1.46-1) ...
Setting up autopoint (0.21-10) ...
Setting up libassuan-dev (2.5.5-5) ...
Setting up d-shlibs (0.104) ...
Setting up pkgconf-bin (1.8.0-12) ...
Setting up libgpgme-dev (1.18.0-3) ...
Setting up autoconf (2.71-3) ...
Setting up libboost-atomic1.74-dev:armhf (1.74.0-18.1) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ...
Setting up libboost-atomic-dev:armhf (1.74.0.3+b4) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-10) ...
Setting up libgmp-dev:armhf (2:6.2.1+dfsg1-1.1) ...
Setting up nettle-dev:armhf (3.8.1-2) ...
Setting up libtool (2.4.7-5) ...
Setting up pkgconf:armhf (1.8.0-12) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up pkg-config:armhf (1.8.0-12) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-9) ...
Setting up libsecrecy-dev:armhf (0.0.5+ds-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.11.4) ...
Setting up sbuild-build-depends-libmaus2-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.36-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39.50.20221208-5+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-10+rpi1 gcc-12_12.2.0-10+rpi1 libc6-dev_2.36-6+rpi1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 linux-libc-dev_6.0.12-1+rpi1
Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2-2 binutils_2.39.50.20221208-5+rpi1 binutils-arm-linux-gnueabihf_2.39.50.20221208-5+rpi1 binutils-common_2.39.50.20221208-5+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-10+rpi1 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.80 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-1 dirmngr_2.2.40-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-10+rpi1 gcc_4:12.2.0-1+rpi1 gcc-10-base_10.4.0-5+rpi1 gcc-12_12.2.0-10+rpi1 gcc-12-base_12.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-2 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan8_12.2.0-10+rpi1 libassuan-dev_2.5.5-5 libassuan0_2.5.5-5 libatomic1_12.2.0-10+rpi1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39.50.20221208-5+rpi1 libblkid1_2.38.1-4 libboost-atomic-dev_1.74.0.3+b4 libboost-atomic1.74-dev_1.74.0-18.1 libboost-atomic1.74.0_1.74.0-18.1 libboost1.74-dev_1.74.0-18.1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-6+rpi1 libc-dev-bin_2.36-6+rpi1 libc6_2.36-6+rpi1 libc6-dev_2.36-6+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-10+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.39.50.20221208-5+rpi1 libctf0_2.39.50.20221208-5+rpi1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.4 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.2.0-10+rpi1 libgcc-s1_12.2.0-10+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp-dev_2:6.2.1+dfsg1-1.1 libgmp10_2:6.2.1+dfsg1-1.1 libgmpxx4ldbl_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-10+rpi1 libgpg-error-dev_1.46-1 libgpg-error0_1.46-1 libgpgme-dev_1.18.0-3 libgpgme11_1.18.0-3 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libjansson4_2.14-2 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libksba8_1.6.2-4 libldap-2.4-2_2.4.59+dfsg-1 libldap-2.5-0_2.5.13+dfsg-2+rpi1+b1 libldap-common_2.5.13+dfsg-2+rpi1 liblocale-gettext-perl_1.07-5 liblz4-1_1.9.4-1+rpi1 liblzma5_5.4.0-0.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-3 libpcre3_2:8.39-14 libperl5.36_5.36.0-6 libpipeline1_1.5.7-1 libpkgconf3_1.8.0-12 libreadline8_8.2-1.2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1 libsecrecy-dev_0.0.5+ds-2 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1 libssl1.1_1.1.1o-1 libssl3_3.0.7-1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.2-1+rpi1 libtasn1-6_4.19.0-2 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_252.2-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-4 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.12-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-2 make_4.3-4.1 man-db_2.11.2-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 nano_7.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.4 nettle-dev_3.8.1-2 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1 pkg-config_1.8.0-12 pkgconf_1.8.0-12 pkgconf-bin_1.8.0-12 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libmaus2-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-7 tar_1.34+dfsg-1 tzdata_2022f-1 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.4.0-0.1 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.1NHiOr5Z/trustedkeys.kbx': General error
gpgv: Signature made Sun Jan 1 23:22:43 2023 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./libmaus2_2.0.813+ds-1.dsc
dpkg-source: info: extracting libmaus2 in /<<BUILDDIR>>/libmaus2-2.0.813+ds
dpkg-source: info: unpacking libmaus2_2.0.813+ds.orig.tar.xz
dpkg-source: info: unpacking libmaus2_2.0.813+ds-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-62d33076-bca8-4567-8bd3-d3940a625b6b
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libmaus2
dpkg-buildpackage: info: source version 2.0.813+ds-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:4: warning: The macro `AC_CANONICAL_SYSTEM' is obsolete.
configure.ac:4: You should run autoupdate.
./lib/autoconf/general.m4:2081: AC_CANONICAL_SYSTEM is expanded from...
configure.ac:4: the top level
configure.ac:6: warning: The macro `AC_PROG_LIBTOOL' is obsolete.
configure.ac:6: You should run autoupdate.
m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from...
configure.ac:6: the top level
configure.ac:9: warning: 'AM_CONFIG_HEADER': this macro is obsolete.
configure.ac:9: You should use the 'AC_CONFIG_HEADERS' macro instead.
./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from...
aclocal.m4:1089: AM_CONFIG_HEADER is expanded from...
configure.ac:9: the top level
configure.ac:77: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:77: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:77: the top level
configure.ac:153: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:153: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:153: the top level
configure.ac:211: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:211: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:211: the top level
configure.ac:247: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:247: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:247: the top level
configure.ac:276: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:276: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:276: the top level
configure.ac:331: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:331: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:331: the top level
configure.ac:386: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:386: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:386: the top level
configure.ac:565: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:565: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:565: the top level
configure.ac:577: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:577: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:577: the top level
configure.ac:589: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:589: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:589: the top level
configure.ac:601: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:601: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:601: the top level
configure.ac:613: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:613: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:613: the top level
configure.ac:627: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:627: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:627: the top level
configure.ac:641: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:641: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:641: the top level
configure.ac:655: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:655: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:655: the top level
configure.ac:669: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:669: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:669: the top level
configure.ac:683: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:683: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:683: the top level
configure.ac:696: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:696: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:696: the top level
configure.ac:713: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:713: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:713: the top level
configure.ac:727: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:727: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:727: the top level
configure.ac:743: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:743: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:743: the top level
configure.ac:759: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:759: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:759: the top level
configure.ac:773: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:773: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:773: the top level
configure.ac:786: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:786: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:786: the top level
configure.ac:800: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:800: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:800: the top level
configure.ac:813: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:813: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:813: the top level
configure.ac:829: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:829: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:829: the top level
configure.ac:838: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:838: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:838: the top level
configure.ac:851: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:851: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:851: the top level
configure.ac:865: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:865: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:865: the top level
configure.ac:879: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:879: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:879: the top level
configure.ac:893: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:893: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:893: the top level
configure.ac:909: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:909: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:909: the top level
configure.ac:951: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:951: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:951: the top level
configure.ac:969: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:969: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:969: the top level
configure.ac:988: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:988: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:988: the top level
configure.ac:1003: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1003: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1003: the top level
configure.ac:1020: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1020: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1020: the top level
configure.ac:1038: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1038: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1038: the top level
configure.ac:1056: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1056: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1056: the top level
configure.ac:1073: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1073: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1073: the top level
configure.ac:1090: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1090: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1090: the top level
configure.ac:1107: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1107: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1107: the top level
configure.ac:1124: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1124: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1124: the top level
configure.ac:1157: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1157: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1157: the top level
configure.ac:1174: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1174: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1174: the top level
configure.ac:1191: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1191: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1191: the top level
configure.ac:1224: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1224: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1224: the top level
configure.ac:1242: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1242: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1242: the top level
configure.ac:1260: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1260: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1260: the top level
configure.ac:1280: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1280: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1280: the top level
configure.ac:1300: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1300: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1300: the top level
configure.ac:1320: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1320: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1320: the top level
configure.ac:1340: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1340: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1340: the top level
configure.ac:1360: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1360: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1360: the top level
configure.ac:1380: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1380: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1380: the top level
configure.ac:1400: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1400: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1400: the top level
configure.ac:1437: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1437: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1437: the top level
configure.ac:1457: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1457: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1457: the top level
configure.ac:1477: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1477: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1477: the top level
configure.ac:1497: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1497: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1497: the top level
configure.ac:1536: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1536: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1536: the top level
configure.ac:1556: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1556: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1556: the top level
configure.ac:1577: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1577: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1577: the top level
configure.ac:1597: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1597: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1597: the top level
configure.ac:1612: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1612: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1612: the top level
configure.ac:1690: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1690: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1690: the top level
configure.ac:1699: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1699: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1699: the top level
configure.ac:1715: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1715: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1715: the top level
configure.ac:1731: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1731: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1731: the top level
configure.ac:1744: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1744: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1744: the top level
configure.ac:1759: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1759: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1759: the top level
configure.ac:1773: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1773: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1773: the top level
configure.ac:1787: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1787: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1787: the top level
configure.ac:1800: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1800: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1800: the top level
configure.ac:1819: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1819: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1819: the top level
configure.ac:1900: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:1900: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
m4/ax_openmp.m4:68: AX_OPENMP is expanded from...
configure.ac:1900: the top level
configure.ac:1910: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1910: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1910: the top level
configure.ac:1926: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1926: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1926: the top level
configure.ac:1946: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:1946: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:1946: the top level
configure.ac:2343: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:2343: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:2343: the top level
configure.ac:2382: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:2382: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:2382: the top level
configure.ac:2739: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:2739: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:2739: the top level
configure.ac:2807: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:2807: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:2807: the top level
configure.ac:2836: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:2836: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:2836: the top level
configure.ac:2852: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:2852: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:2852: the top level
configure.ac:3018: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:3018: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:3018: the top level
configure.ac:3243: warning: AC_OUTPUT should be used without arguments.
configure.ac:3243: You should run autoupdate.
configure.ac:6: installing './compile'
configure.ac:4: installing './config.guess'
configure.ac:4: installing './config.sub'
configure.ac:8: installing './install-sh'
configure.ac:8: installing './missing'
Makefile.am: installing './INSTALL'
src/Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
configure: Configuring for source in directory .
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking target system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking for gawk... no
checking for mawk... mawk
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking whether make sets $(MAKE)... yes
checking whether make supports the include directive... yes (GNU style)
checking whether make supports nested variables... yes
checking how to create a pax tar archive... gnutar
checking dependency style of gcc... none
checking whether we are cross compiling... no
checking for bash... /bin/bash
checking for base64... /usr/bin/base64
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking dependency style of g++... none
checking whether host cpu is x86_64... no
checking whether host os is GNU/Linux... no
checking whether we are compiling for x86_64 CPU on GNU/Linux OS ... no
checking size of unsigned long... 4
checking for winsock2.h... no
checking for ws2tcpip.h... no
checking for sys/wait.h... yes
checking for sys/ioctl.h... yes
checking for execinfo.h... yes
checking for windows.h... no
checking for unistd.h... (cached) yes
checking for linux/sysctl.h... yes
checking for features.h... yes
checking for dlfcn.h... (cached) yes
checking for sys/prctl.h... yes
checking for libunwind.h... no
checking for unw_backtrace in -lunwind... no
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for zlib >= 0... yes
checking for libcurl >= 7.47.0... no
checking for parasail-1 >= 2.4.3... no
checking for zlib >= 0... yes
checking whether we can compile a zlib program... yes
checking for snappy.h... no
checking for libdeflate.h... no
checking for GetProcessMemoryInfo... no
checking for dlopen... yes
checking for dlerror... yes
checking for dlsym... yes
checking for dlclose... yes
checking for dlopen in -ldl... yes
checking for dlerror in -ldl... yes
checking for dlsym in -ldl... yes
checking for dlclose in -ldl... yes
checking whether we found the dlopen function anywhere... yes
checking whether we found the dlerror function anywhere... yes
checking whether we found the dlsym function anywhere... yes
checking whether we found the dlclose function anywhere... yes
checking whether we found all the functions required for dynamic modules somewhere... yes
checking whether we need the dl library for any of the dl functions... no
checking for backtrace... yes
checking for gethostname... yes
checking for fsync... yes
checking for dup2... yes
checking for execv... yes
checking for mkstemp... yes
checking for fcntl... yes
checking for pipe... yes
checking for fork... yes
checking for symlink... yes
checking for waitpid... yes
checking for gethostbyname... yes
checking for gethostbyname2... yes
checking for prctl... yes
checking whether SIGPIPE exists... yes
checking whether SIGHUP exists... yes
checking whether pid_t exists... yes
checking whether getpid exists... yes
checking whether O_RDONLY... yes
checking whether O_WRONLY... yes
checking whether O_RDWR... yes
checking whether O_CREAT... yes
checking whether O_TRUNC... yes
checking whether OFF_T... yes
checking whether lseek function exists... yes
checking whether read function exists... yes
checking whether fstat function exists... yes
checking whether stat function exists... yes
checking whether fstatfs function exists... yes
checking whether sysconf function exists... yes
checking whether write function exists... yes
checking whether WIFEXITED exists... yes
checking whether WEXITSTATUS exists... yes
checking whether the C++ compiler supports the -std=c++17 flag... yes
checking whether the C++ compiler supports the -msse4 flag... no
checking whether the C++ compiler supports the -msse2 flag... no
checking whether the C++ compiler supports the -mssse3 flag... no
checking whether the C++ compiler supports the -msse4.1 flag... no
checking whether the C++ compiler supports the -mavx flag... no
checking whether the C++ compiler supports the -mavx2 flag... no
checking for smmintrin.h... no
checking for immintrin.h... no
checking whether the C++ compiler supports __builtin_cpu_supports... no
checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/8 variant)... no
checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/16 variant)... no
checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/8 variant)... no
checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/16 variant)... no
checking whether the C++ compiler supports all intrinsics required for one to many global alignment using AVX2... no
checking for cstdint... yes
checking whether the C++ compiler supports the -msse4 flag... no
checking for open with 2 arguments... yes
checking for open with 3 arguments... yes
checking for close... yes
checking for O_NONBLOCK... yes
checking for O_LARGEFILE... yes
checking for O_BINARY... no
checking for ssize_t... yes
checking for socklen_t... yes
checking whether the C++ compiler supports the -W flag... yes
checking whether the C++ compiler supports the -Wall flag... yes
checking whether the C++ compiler supports the -Wnon-virtual-dtor flag... yes
checking for OpenMP flag of C++ compiler... -fopenmp
checking whether the C++ compiler supports the -rdynamic flag... yes
checking whether std::unique_ptr exists... yes
checking whether std::shared_ptr exists... yes
checking whether std::unordered_map exists... yes
checking whether std::unordered_set exists... yes
checking whether std::move exists... yes
checking whether std::filesystem exists... yes
checking whether byte ordering is bigendian... no
checking for psapi.h... no
checking for fcntl.h... yes
checking for libgen.h... yes
checking for sys/stat.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/vfs.h... yes
checking for boost/smart_ptr/atomic_shared_ptr.hpp... yes
checking whether std::atomic< std::shared_ptr<> > is supported... no
checking whether boost::atomic_shared_ptr< > is supported... yes
configure: Using atomic_shared_ptr from boost
checking whether we can compile a program using statfs... yes
checking whether struct statfs has field f_iosize... no
checking whether struct statfs has field f_bsize... yes
checking whether the C++ compiler supports the -pthread flag... yes
checking whether getpagesize is present... yes
checking for unsigned __int128... no
checking whether we can compile a program using the gmp library... yes
checking for libsecrecy >= 0.0.0... yes
checking whether we can compile a libsecrecy program... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating libmaus2.pc
config.status: creating ubuntu.sh
config.status: creating src/libmaus2/LibMausConfig.hpp
config.status: creating test/Makefile
config.status: creating config.h
config.status: executing libtool commands
config.status: executing depfiles commands
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/libmaus2-2.0.813+ds'
make all-recursive
make[2]: Entering directory '/<<BUILDDIR>>/libmaus2-2.0.813+ds'
Making all in src
make[3]: Entering directory '/<<BUILDDIR>>/libmaus2-2.0.813+ds/src'
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-Phred.lo `test -f 'libmaus2/fastx/Phred.cpp' || echo './'`libmaus2/fastx/Phred.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignmentDecoderBase.lo `test -f 'libmaus2/bambam/BamAlignmentDecoderBase.cpp' || echo './'`libmaus2/bambam/BamAlignmentDecoderBase.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-StrCmpNum.lo `test -f 'libmaus2/bambam/StrCmpNum.cpp' || echo './'`libmaus2/bambam/StrCmpNum.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGenerator.lo `test -f 'libmaus2/util/TempFileNameGenerator.cpp' || echo './'`libmaus2/util/TempFileNameGenerator.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-Phred.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-StrCmpNum.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGenerator.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -o libmaus2/fastx/la-Phred.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGeneratorState.lo `test -f 'libmaus2/util/TempFileNameGeneratorState.cpp' || echo './'`libmaus2/util/TempFileNameGeneratorState.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -o libmaus2/bambam/la-StrCmpNum.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/TempFileNameGeneratorState.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGeneratorState.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-ArgInfo.lo `test -f 'libmaus2/util/ArgInfo.cpp' || echo './'`libmaus2/util/ArgInfo.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ArgInfo.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ArgInfo.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ArgInfo.cpp -o libmaus2/util/la-ArgInfo.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -o libmaus2/bambam/la-BamAlignmentDecoderBase.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-BitList.lo `test -f 'libmaus2/util/BitList.cpp' || echo './'`libmaus2/util/BitList.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/BitList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-BitList.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/BitList.cpp -o libmaus2/util/la-BitList.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-VarBitList.lo `test -f 'libmaus2/util/VarBitList.cpp' || echo './'`libmaus2/util/VarBitList.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/VarBitList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-VarBitList.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/VarBitList.cpp -o libmaus2/util/la-VarBitList.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Concat.lo `test -f 'libmaus2/util/Concat.cpp' || echo './'`libmaus2/util/Concat.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -o libmaus2/util/la-TempFileNameGenerator.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Concat.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Concat.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/TempFileNameGeneratorState.cpp -o libmaus2/util/la-TempFileNameGeneratorState.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Concat.cpp -o libmaus2/util/la-Concat.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-ConcatRequest.lo `test -f 'libmaus2/util/ConcatRequest.cpp' || echo './'`libmaus2/util/ConcatRequest.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ConcatRequest.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ConcatRequest.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ConcatRequest.cpp -o libmaus2/util/la-ConcatRequest.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-ConsoleColor.lo `test -f 'libmaus2/util/ConsoleColor.cpp' || echo './'`libmaus2/util/ConsoleColor.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ConsoleColor.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ConsoleColor.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ConsoleColor.cpp -o libmaus2/util/la-ConsoleColor.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-DynamicLoading.lo `test -f 'libmaus2/util/DynamicLoading.cpp' || echo './'`libmaus2/util/DynamicLoading.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/DynamicLoading.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-DynamicLoading.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-GetFileSize.lo `test -f 'libmaus2/util/GetFileSize.cpp' || echo './'`libmaus2/util/GetFileSize.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/GetFileSize.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GetFileSize.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/DynamicLoading.cpp -o libmaus2/util/la-DynamicLoading.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Histogram.lo `test -f 'libmaus2/util/Histogram.cpp' || echo './'`libmaus2/util/Histogram.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Histogram.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Histogram.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-HistogramSet.lo `test -f 'libmaus2/util/HistogramSet.cpp' || echo './'`libmaus2/util/HistogramSet.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/HistogramSet.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-HistogramSet.o
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from ./libmaus2/autoarray/AutoArray.hpp:35,
from ./libmaus2/util/Histogram.hpp:23,
from libmaus2/util/Histogram.cpp:20:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = pair<long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:70,
from ./libmaus2/stacktrace/StackTrace.hpp:33,
from ./libmaus2/exception/LibMausException.hpp:25,
from ./libmaus2/autoarray/AutoArray.hpp:31:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘std::vector<long long unsigned int> libmaus2::util::Histogram::getKeyVector()’ at libmaus2/util/Histogram.cpp:85:14:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long unsigned int, long long unsigned int> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1625:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1625 | __heap_select(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1625:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1625:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1916:27:
/usr/include/c++/12/bits/stl_algo.h:1900:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1900 | std::__heap_select(__first, __middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘std::vector<std::pair<long long unsigned int, long long unsigned int> > libmaus2::util::Histogram::getFreqSymVector()’ at libmaus2/util/Histogram.cpp:143:22:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘std::vector<std::pair<long long unsigned int, long long unsigned int> > libmaus2::util::Histogram::getFreqSymVector()’ at libmaus2/util/Histogram.cpp:145:12:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘std::vector<std::pair<long long unsigned int, long long unsigned int> > libmaus2::util::Histogram::getFreqSymVector()’ at libmaus2/util/Histogram.cpp:145:12:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Histogram.cpp -o libmaus2/util/la-Histogram.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/HistogramSet.cpp -o libmaus2/util/la-HistogramSet.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-IncreasingList.lo `test -f 'libmaus2/util/IncreasingList.cpp' || echo './'`libmaus2/util/IncreasingList.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-IncreasingList.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-IntervalTree.lo `test -f 'libmaus2/util/IntervalTree.cpp' || echo './'`libmaus2/util/IntervalTree.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-IntervalTree.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-GenericIntervalTree.lo `test -f 'libmaus2/util/GenericIntervalTree.cpp' || echo './'`libmaus2/util/GenericIntervalTree.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GenericIntervalTree.o
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from ./libmaus2/autoarray/AutoArray.hpp:35,
from ./libmaus2/util/IncreasingList.hpp:23,
from libmaus2/util/IncreasingList.cpp:20:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -o libmaus2/util/la-IntervalTree.o >/dev/null 2>&1
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static void libmaus2::util::IncreasingList::test(const std::vector<long long unsigned int>&)’ at libmaus2/util/IncreasingList.cpp:44:12:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static void libmaus2::util::IncreasingList::test(const std::vector<long long unsigned int>&)’ at libmaus2/util/IncreasingList.cpp:44:12:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -o libmaus2/util/la-IncreasingList.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -o libmaus2/util/la-GenericIntervalTree.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-LookupIntervalTree.lo `test -f 'libmaus2/util/LookupIntervalTree.cpp' || echo './'`libmaus2/util/LookupIntervalTree.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LookupIntervalTree.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/GetFileSize.cpp -o libmaus2/util/la-GetFileSize.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-md5_interface.lo `test -f 'libmaus2/digest/md5_interface.cpp' || echo './'`libmaus2/digest/md5_interface.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/md5_interface.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-md5_interface.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-MemUsage.lo `test -f 'libmaus2/util/MemUsage.cpp' || echo './'`libmaus2/util/MemUsage.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/MemUsage.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-MemUsage.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -o libmaus2/util/la-LookupIntervalTree.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/MemUsage.cpp -o libmaus2/util/la-MemUsage.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/md5_interface.cpp -o libmaus2/digest/la-md5_interface.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-nstat.lo `test -f 'libmaus2/util/nstat.cpp' || echo './'`libmaus2/util/nstat.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/nstat.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-nstat.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/nstat.cpp -o libmaus2/util/la-nstat.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-SaturatingCounter.lo `test -f 'libmaus2/util/SaturatingCounter.cpp' || echo './'`libmaus2/util/SaturatingCounter.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/SaturatingCounter.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-SaturatingCounter.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-StringSerialisation.lo `test -f 'libmaus2/util/StringSerialisation.cpp' || echo './'`libmaus2/util/StringSerialisation.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/StringSerialisation.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-StringSerialisation.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-SuccinctBorderArray.lo `test -f 'libmaus2/util/SuccinctBorderArray.cpp' || echo './'`libmaus2/util/SuccinctBorderArray.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/SuccinctBorderArray.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-SuccinctBorderArray.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/SuccinctBorderArray.cpp -o libmaus2/util/la-SuccinctBorderArray.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/SaturatingCounter.cpp -o libmaus2/util/la-SaturatingCounter.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Terminal.lo `test -f 'libmaus2/util/Terminal.cpp' || echo './'`libmaus2/util/Terminal.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Terminal.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Terminal.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/StringSerialisation.cpp -o libmaus2/util/la-StringSerialisation.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Terminal.cpp -o libmaus2/util/la-Terminal.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-OctetString.lo `test -f 'libmaus2/util/OctetString.cpp' || echo './'`libmaus2/util/OctetString.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/OctetString.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-OctetString.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Utf8String.lo `test -f 'libmaus2/util/Utf8String.cpp' || echo './'`libmaus2/util/Utf8String.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8String.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8String.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Utf8BlockIndexDecoder.lo `test -f 'libmaus2/util/Utf8BlockIndexDecoder.cpp' || echo './'`libmaus2/util/Utf8BlockIndexDecoder.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8BlockIndexDecoder.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8BlockIndexDecoder.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Utf8BlockIndex.lo `test -f 'libmaus2/util/Utf8BlockIndex.cpp' || echo './'`libmaus2/util/Utf8BlockIndex.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8BlockIndex.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8BlockIndex.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8BlockIndexDecoder.cpp -o libmaus2/util/la-Utf8BlockIndexDecoder.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Utf8DecoderBuffer.lo `test -f 'libmaus2/util/Utf8DecoderBuffer.cpp' || echo './'`libmaus2/util/Utf8DecoderBuffer.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8DecoderBuffer.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8DecoderBuffer.o
In file included from /usr/include/c++/12/vector:70,
from ./libmaus2/util/GetFileSize.hpp:23,
from ./libmaus2/util/Utf8BlockIndex.hpp:22,
from libmaus2/util/Utf8BlockIndex.cpp:19:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘static libmaus2::util::Utf8BlockIndex::unique_ptr_type libmaus2::util::Utf8BlockIndex::constructFromUtf8File(const std::string&, uint64_t, uint64_t)’ at libmaus2/util/Utf8BlockIndex.cpp:96:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘static libmaus2::util::Utf8BlockIndex::unique_ptr_type libmaus2::util::Utf8BlockIndex::constructFromUtf8File(const std::string&, uint64_t, uint64_t)’ at libmaus2/util/Utf8BlockIndex.cpp:105:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8BlockIndex.cpp -o libmaus2/util/la-Utf8BlockIndex.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8DecoderBuffer.cpp -o libmaus2/util/la-Utf8DecoderBuffer.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/OctetString.cpp -o libmaus2/util/la-OctetString.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Utf8DecoderWrapper.lo `test -f 'libmaus2/util/Utf8DecoderWrapper.cpp' || echo './'`libmaus2/util/Utf8DecoderWrapper.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8DecoderWrapper.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8DecoderWrapper.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-AlignmentValidity.lo `test -f 'libmaus2/bambam/AlignmentValidity.cpp' || echo './'`libmaus2/bambam/AlignmentValidity.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/AlignmentValidity.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-AlignmentValidity.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/AlignmentValidity.cpp -o libmaus2/bambam/la-AlignmentValidity.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamFlagBase.lo `test -f 'libmaus2/bambam/BamFlagBase.cpp' || echo './'`libmaus2/bambam/BamFlagBase.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamFlagBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamFlagBase.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8DecoderWrapper.cpp -o libmaus2/util/la-Utf8DecoderWrapper.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamFlagBase.cpp -o libmaus2/bambam/la-BamFlagBase.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8String.cpp -o libmaus2/util/la-Utf8String.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/ReadGroup.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadGroup.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/DuplicationMetrics.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-DuplicationMetrics.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/ReadGroup.cpp -o libmaus2/bambam/la-ReadGroup.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/DuplicationMetrics.cpp -o libmaus2/bambam/la-DuplicationMetrics.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamDefaultAdapters.lo `test -f 'libmaus2/bambam/BamDefaultAdapters.cpp' || echo './'`libmaus2/bambam/BamDefaultAdapters.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamDefaultAdapters.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamDefaultAdapters.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamDefaultAdapters.cpp -o libmaus2/bambam/la-BamDefaultAdapters.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamRange.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamRange.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamIndexBinChunk.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamIndexBinChunk.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamIndexLinearChunk.lo `test -f 'libmaus2/bambam/BamIndexLinearChunk.cpp' || echo './'`libmaus2/bambam/BamIndexLinearChunk.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamIndexLinearChunk.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamIndexLinearChunk.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamIndexBinChunk.cpp -o libmaus2/bambam/la-BamIndexBinChunk.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamIndexLinearChunk.cpp -o libmaus2/bambam/la-BamIndexLinearChunk.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/huffman/la-HuffmanTree.lo `test -f 'libmaus2/huffman/HuffmanTree.cpp' || echo './'`libmaus2/huffman/HuffmanTree.cpp
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/huffman/HuffmanTree.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-HuffmanTree.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderInfo.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -o libmaus2/bambam/la-BamAlignmentDecoderInfo.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/huffman/HuffmanTree.cpp -o libmaus2/huffman/la-HuffmanTree.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/Lz4Base.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4Base.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/Lz4Base.cpp -o libmaus2/lz/la-Lz4Base.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/Lz4Compress.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4Compress.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/Lz4DecoderBuffer.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4DecoderBuffer.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamRange.cpp -o libmaus2/bambam/la-BamRange.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/Lz4Compress.cpp -o libmaus2/lz/la-Lz4Compress.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/Lz4DecoderBuffer.cpp -o libmaus2/lz/la-Lz4DecoderBuffer.o >/dev/null 2>&1
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c libmaus2/lz/lz4.c -fPIC -DPIC -o libmaus2/lz/.libs/la-lz4.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fm/BidirectionalIndexInterval.cpp -fPIC -DPIC -o libmaus2/fm/.libs/la-BidirectionalIndexInterval.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c libmaus2/lz/lz4.c -o libmaus2/lz/la-lz4.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fm/BidirectionalIndexIntervalSymbol.cpp -fPIC -DPIC -o libmaus2/fm/.libs/la-BidirectionalIndexIntervalSymbol.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fm/BidirectionalIndexInterval.cpp -o libmaus2/fm/la-BidirectionalIndexInterval.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fm/BidirectionalIndexIntervalSymbol.cpp -o libmaus2/fm/la-BidirectionalIndexIntervalSymbol.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastALineParserLineInfo.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastALineParserLineInfo.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAMatchTable.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAMatchTable.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastABgzfIndexEntry.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastABgzfIndexEntry.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastALineParserLineInfo.cpp -o libmaus2/fastx/la-FastALineParserLineInfo.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAMatchTable.cpp -o libmaus2/fastx/la-FastAMatchTable.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastABgzfIndex.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastABgzfIndex.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAIndexEntry.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAIndexEntry.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastABgzfIndexEntry.cpp -o libmaus2/fastx/la-FastABgzfIndexEntry.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastABgzfIndex.cpp -o libmaus2/fastx/la-FastABgzfIndex.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAIndexEntry.cpp -o libmaus2/fastx/la-FastAIndexEntry.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAIndex.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAIndex.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/LocalBaseConstants.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-LocalBaseConstants.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/LocalBaseConstants.cpp -o libmaus2/lcs/la-LocalBaseConstants.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/LocalEditDistanceResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-LocalEditDistanceResult.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/LocalEditDistanceResult.cpp -o libmaus2/lcs/la-LocalEditDistanceResult.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/GeneFlatFile.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-GeneFlatFile.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-GeneFlatFileEntry.lo `test -f 'libmaus2/bambam/GeneFlatFileEntry.cpp' || echo './'`libmaus2/bambam/GeneFlatFileEntry.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/GeneFlatFileEntry.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-GeneFlatFileEntry.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAIndex.cpp -o libmaus2/fastx/la-FastAIndex.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/GeneFlatFileEntry.cpp -o libmaus2/bambam/la-GeneFlatFileEntry.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.lo `test -f 'libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp' || echo './'`libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-SamInfoBase.lo `test -f 'libmaus2/bambam/SamInfoBase.cpp' || echo './'`libmaus2/bambam/SamInfoBase.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/SamInfoBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-SamInfoBase.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/GeneFlatFile.cpp -o libmaus2/bambam/la-GeneFlatFile.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamHeaderParserStateBase.cpp -o libmaus2/bambam/la-BamHeaderParserStateBase.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/SamInfoBase.cpp -o libmaus2/bambam/la-SamInfoBase.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-SHA1.lo `test -f 'libmaus2/digest/SHA1.cpp' || echo './'`libmaus2/digest/SHA1.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA1.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA1.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA1.cpp -o libmaus2/digest/la-SHA1.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_224.lo `test -f 'libmaus2/digest/SHA2_224.cpp' || echo './'`libmaus2/digest/SHA2_224.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_224.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_224.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_256.lo `test -f 'libmaus2/digest/SHA2_256.cpp' || echo './'`libmaus2/digest/SHA2_256.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_256.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_256.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp -o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_224.cpp -o libmaus2/digest/la-SHA2_224.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_384.lo `test -f 'libmaus2/digest/SHA2_384.cpp' || echo './'`libmaus2/digest/SHA2_384.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_384.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_384.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_256.cpp -o libmaus2/digest/la-SHA2_256.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_512.lo `test -f 'libmaus2/digest/SHA2_512.cpp' || echo './'`libmaus2/digest/SHA2_512.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_512.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_512.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_384.cpp -o libmaus2/digest/la-SHA2_384.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/CRC32.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_512.cpp -o libmaus2/digest/la-SHA2_512.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/CRC32C_Core.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32C_Core.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/CRC32.cpp -o libmaus2/digest/la-CRC32.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/CRC32C_Core.cpp -o libmaus2/digest/la-CRC32C_Core.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/CRC32C.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32C.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/CRC32_Core.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32_Core.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/CRC32_Core.cpp -o libmaus2/digest/la-CRC32_Core.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-NameInfoBase.lo `test -f 'libmaus2/fastx/NameInfoBase.cpp' || echo './'`libmaus2/fastx/NameInfoBase.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/NameInfoBase.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-NameInfoBase.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/NameInfoBase.cpp -o libmaus2/fastx/la-NameInfoBase.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-RefIdInterval.lo `test -f 'libmaus2/bambam/parallel/RefIdInterval.cpp' || echo './'`libmaus2/bambam/parallel/RefIdInterval.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/parallel/RefIdInterval.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-RefIdInterval.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-RefPathToken.lo `test -f 'libmaus2/fastx/RefPathToken.cpp' || echo './'`libmaus2/fastx/RefPathToken.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/RefPathToken.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-RefPathToken.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/CRC32C.cpp -o libmaus2/digest/la-CRC32C.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/parallel/RefIdInterval.cpp -o libmaus2/bambam/parallel/la-RefIdInterval.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/RefPathToken.cpp -o libmaus2/fastx/la-RefPathToken.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-RefPathTokenVector.lo `test -f 'libmaus2/fastx/RefPathTokenVector.cpp' || echo './'`libmaus2/fastx/RefPathTokenVector.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/RefPathTokenVector.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-RefPathTokenVector.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignmentStatistics.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/RefPathTokenVector.cpp -o libmaus2/fastx/la-RefPathTokenVector.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignerFactory.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -o libmaus2/lcs/la-AlignmentStatistics.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -o libmaus2/fastx/la-SingleWordDNABitBuffer.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-BandedAlignerFactory.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TraceBlock.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-ApproximateRun.lo `test -f 'libmaus2/dazzler/align/ApproximateRun.cpp' || echo './'`libmaus2/dazzler/align/ApproximateRun.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-ApproximateRun.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -o libmaus2/dazzler/align/la-TraceBlock.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -o libmaus2/dazzler/align/la-ApproximateRun.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo `test -f 'libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp' || echo './'`libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapMeta.lo `test -f 'libmaus2/dazzler/align/OverlapMeta.cpp' || echo './'`libmaus2/dazzler/align/OverlapMeta.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapMeta.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -o libmaus2/lcs/la-BandedAlignerFactory.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -o libmaus2/lcs/la-AlignerFactory.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -o libmaus2/dazzler/align/la-OverlapMeta.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Tandem.lo `test -f 'libmaus2/dazzler/align/Tandem.cpp' || echo './'`libmaus2/dazzler/align/Tandem.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Tandem.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TandemVector.lo `test -f 'libmaus2/dazzler/align/TandemVector.cpp' || echo './'`libmaus2/dazzler/align/TandemVector.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TandemVector.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/math/la-GmpInteger.lo `test -f 'libmaus2/math/GmpInteger.cpp' || echo './'`libmaus2/math/GmpInteger.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/GmpInteger.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-GmpInteger.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -o libmaus2/dazzler/align/la-Tandem.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/GmpInteger.cpp -o libmaus2/math/la-GmpInteger.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -o libmaus2/dazzler/align/la-TandemVector.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/math/la-GmpFloat.lo `test -f 'libmaus2/math/GmpFloat.cpp' || echo './'`libmaus2/math/GmpFloat.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/GmpFloat.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-GmpFloat.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TracePoint.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TracePoint.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TracePoint.cpp -o libmaus2/dazzler/align/la-TracePoint.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/XzDecoder.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-XzDecoder.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/GmpFloat.cpp -o libmaus2/math/la-GmpFloat.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ArgParser.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ArgParser.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/XzDecoder.cpp -o libmaus2/lz/la-XzDecoder.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataSequence.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataSequence.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataSequence.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataSequence.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataSequence.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataSequence.cpp -o libmaus2/fastx/la-DNAIndexMetaDataSequence.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaData.lo `test -f 'libmaus2/fastx/DNAIndexMetaData.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaData.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaData.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaData.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ArgParser.cpp -o libmaus2/util/la-ArgParser.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-PileVectorElement.lo `test -f 'libmaus2/bambam/PileVectorElement.cpp' || echo './'`libmaus2/bambam/PileVectorElement.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/PileVectorElement.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-PileVectorElement.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-PileQualityVectorElement.lo `test -f 'libmaus2/bambam/PileQualityVectorElement.cpp' || echo './'`libmaus2/bambam/PileQualityVectorElement.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/PileQualityVectorElement.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-PileQualityVectorElement.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaData.cpp -o libmaus2/fastx/la-DNAIndexMetaData.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/PileVectorElement.cpp -o libmaus2/bambam/la-PileVectorElement.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/PileQualityVectorElement.cpp -o libmaus2/bambam/la-PileQualityVectorElement.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-SHA3_256.lo `test -f 'libmaus2/digest/SHA3_256.cpp' || echo './'`libmaus2/digest/SHA3_256.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA3_256.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA3_256.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataBigBand.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataBigBand.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataBigBand.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBand.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/rank/la-DNARankBiDirRange.lo `test -f 'libmaus2/rank/DNARankBiDirRange.cpp' || echo './'`libmaus2/rank/DNARankBiDirRange.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankBiDirRange.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -o libmaus2/rank/la-DNARankBiDirRange.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceElement.lo `test -f 'libmaus2/lcs/NNPTraceElement.cpp' || echo './'`libmaus2/lcs/NNPTraceElement.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceElement.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBand.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA3_256.cpp -o libmaus2/digest/la-SHA3_256.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -o libmaus2/lcs/la-NNPTraceElement.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceContainer.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-NNPAlignResult.lo `test -f 'libmaus2/lcs/NNPAlignResult.cpp' || echo './'`libmaus2/lcs/NNPAlignResult.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPAlignResult.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-FastAToCompact4BigBand.lo `test -f 'libmaus2/fastx/FastAToCompact4BigBand.cpp' || echo './'`libmaus2/fastx/FastAToCompact4BigBand.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -o libmaus2/lcs/la-NNPAlignResult.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -o libmaus2/lcs/la-NNPTraceContainer.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lz/la-ZlibInterface.lo `test -f 'libmaus2/lz/ZlibInterface.cpp' || echo './'`libmaus2/lz/ZlibInterface.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-ZlibInterface.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -o libmaus2/lz/la-ZlibInterface.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-FileRemoval.lo `test -f 'libmaus2/aio/FileRemoval.cpp' || echo './'`libmaus2/aio/FileRemoval.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-FileRemoval.o
In file included from /usr/include/c++/12/vector:70,
from ./libmaus2/fastx/FastAToCompact4BigBand.hpp:21,
from libmaus2/fastx/FastAToCompact4BigBand.cpp:18:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long unsigned int, long long unsigned int> >::iterator’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static int libmaus2::fastx::FastAToCompact4BigBand::fastaToCompact4BigBand(const std::vector<std::__cxx11::basic_string<char> >&, bool, bool, std::ostream*, std::string)’ at libmaus2/fastx/FastAToCompact4BigBand.cpp:190:19:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static int libmaus2::fastx::FastAToCompact4BigBand::fastaToCompact4BigBand(const std::vector<std::__cxx11::basic_string<char> >&, bool, bool, std::ostream*, std::string)’ at libmaus2/fastx/FastAToCompact4BigBand.cpp:206:19:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static int libmaus2::fastx::FastAToCompact4BigBand::fastaToCompact4BigBand(const std::vector<std::__cxx11::basic_string<char> >&, bool, bool, std::ostream*, std::string)’ at libmaus2/fastx/FastAToCompact4BigBand.cpp:248:25:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -o libmaus2/aio/la-FileRemoval.o >/dev/null 2>&1
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from ./libmaus2/autoarray/AutoArray.hpp:35,
from ./libmaus2/lz/StreamWrapperBuffer.hpp:23,
from ./libmaus2/lz/StreamWrapper.hpp:22,
from ./libmaus2/aio/PosixFdInput.hpp:26,
from ./libmaus2/aio/PosixFdInputWrapper.hpp:22,
from ./libmaus2/aio/PosixFdInputStream.hpp:22,
from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23,
from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23,
from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21,
from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
135 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<QueueElement*, vector<QueueElement, allocator<QueueElement> > >; _Distance = int; _Tp = QueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val<less<QueueElement> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<QueueElement*, std::vector<QueueElement, std::allocator<QueueElement> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, IsaTriple>*, vector<pair<long long unsigned int, IsaTriple>, allocator<pair<long long unsigned int, IsaTriple> > > >; _Distance = int; _Tp = pair<long long unsigned int, IsaTriple>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::MergingReadBack<IsaTriple, less<IsaTriple> >::HeapOrderAdapter>]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, IsaTriple>*, std::vector<std::pair<long long unsigned int, IsaTriple>, std::allocator<std::pair<long long unsigned int, IsaTriple> > > >’ changed in GCC 7.1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -o libmaus2/fastx/la-FastAToCompact4BigBand.o >/dev/null 2>&1
In file included from /usr/include/c++/12/vector:70,
from ./libmaus2/stacktrace/StackTrace.hpp:33,
from ./libmaus2/exception/LibMausException.hpp:25,
from ./libmaus2/parallel/StdMutex.hpp:23,
from ./libmaus2/aio/StreamLock.hpp:21,
from ./libmaus2/aio/PosixFdInput.hpp:23:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const libmaus2::huffman::IndexEntry&}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::huffman::IndexEntry>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {QueueElement}; _Tp = QueueElement; _Alloc = std::allocator<QueueElement>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<QueueElement, std::allocator<QueueElement> >::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:70,
from ./libmaus2/stacktrace/StackTrace.hpp:33,
from ./libmaus2/exception/LibMausException.hpp:25,
from ./libmaus2/autoarray/AutoArray.hpp:31,
from ./libmaus2/rank/ChooseCache.hpp:23,
from ./libmaus2/rank/CodeBase.hpp:23,
from ./libmaus2/rank/EncodeCache.hpp:23,
from ./libmaus2/rank/ERankBase.hpp:24,
from ./libmaus2/rank/ImpCacheLineRank.hpp:24,
from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23,
from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22,
from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long int, long long unsigned int>}; _Tp = std::pair<long long int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long int, long long unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long int, long long unsigned int> >::iterator’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long int, long long unsigned int>}; _Tp = std::pair<long long int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long int, long long unsigned int> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<long long int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long int, long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolDepthVector(std::vector<std::pair<long long int, long long unsigned int> >&, uint64_t) const’ at ./libmaus2/huffman/HuffmanTreeLeaf.hpp:71:44:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, long long unsigned int>*, std::vector<std::pair<long long int, long long unsigned int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long unsigned int, long long unsigned int> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’,
inlined from ‘static void libmaus2::huffman::RLEncoderTemplate<_huffmanencoderfile_type>::appendTemplate(out_type&, const std::string&, std::vector<libmaus2::huffman::IndexEntry>&) [with out_type = libmaus2::huffman::HuffmanEncoderFileTemplate<libmaus2::aio::SynchronousGenericOutput<unsigned char>, libmaus2::bitio::FastWriteBitWriterTemplate<unsigned char, libmaus2::aio::PutOutputIterator<unsigned char, libmaus2::aio::SynchronousGenericOutput<unsigned char> >, 128, 255, false> >; _huffmanencoderfile_type = libmaus2::huffman::HuffmanEncoderFileTemplate<libmaus2::aio::SynchronousGenericOutput<unsigned char>, libmaus2::bitio::FastWriteBitWriterTemplate<unsigned char, libmaus2::aio::PutOutputIterator<unsigned char, libmaus2::aio::SynchronousGenericOutput<unsigned char> >, 128, 255, false> >]’ at ./libmaus2/huffman/RLEncoder.hpp:338:22,
inlined from ‘static void libmaus2::huffman::RLEncoderTemplate<_huffmanencoderfile_type>::concatenate(const std::vector<std::__cxx11::basic_string<char> >&, const std::string&, bool) [with _huffmanencoderfile_type = libmaus2::huffman::HuffmanEncoderFileTemplate<libmaus2::aio::SynchronousGenericOutput<unsigned char>, libmaus2::bitio::FastWriteBitWriterTemplate<unsigned char, libmaus2::aio::PutOutputIterator<unsigned char, libmaus2::aio::SynchronousGenericOutput<unsigned char> >, 128, 255, false> >]’ at ./libmaus2/huffman/RLEncoder.hpp:367:20:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::huffman::IndexEntry*, std::vector<libmaus2::huffman::IndexEntry> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, IsaTriple>*, vector<pair<long long unsigned int, IsaTriple>, allocator<pair<long long unsigned int, IsaTriple> > > >; _Distance = int; _Tp = pair<long long unsigned int, IsaTriple>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<libmaus2::sorting::MergingReadBack<IsaTriple, less<IsaTriple> >::HeapOrderAdapter>]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, IsaTriple>*, std::vector<std::pair<long long unsigned int, IsaTriple>, std::allocator<std::pair<long long unsigned int, IsaTriple> > > >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, IsaTriple>}; _Tp = std::pair<long long unsigned int, IsaTriple>; _Alloc = std::allocator<std::pair<long long unsigned int, IsaTriple> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long unsigned int, IsaTriple>, std::allocator<std::pair<long long unsigned int, IsaTriple> > >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector<MergeStepRecSerialRequest<iterator, order_type, base_sort> >&, uint64_t) [with iterator = std::pair<long long unsigned int, long long unsigned int>*; order_type = libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>; base_sort = FixedSizeBaseSort]’ at ./libmaus2/sorting/InPlaceParallelSort.hpp:371:22,
inlined from ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector<MergeStepRecSerialRequest<iterator, order_type, base_sort> >&, uint64_t) [with iterator = std::pair<long long unsigned int, long long unsigned int>*; order_type = libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>; base_sort = FixedSizeBaseSort]’ at ./libmaus2/sorting/InPlaceParallelSort.hpp:353:16:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/rank/la-DNARankMEM.lo `test -f 'libmaus2/rank/DNARankMEM.cpp' || echo './'`libmaus2/rank/DNARankMEM.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankMEM.o
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector<MergeStepRecSerialRequest<iterator, order_type, base_sort> >&, uint64_t) [with iterator = std::pair<long long unsigned int, long long unsigned int>*; order_type = libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>; base_sort = FixedSizeBaseSort]’ at ./libmaus2/sorting/InPlaceParallelSort.hpp:371:22,
inlined from ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector<MergeStepRecSerialRequest<iterator, order_type, base_sort> >&, uint64_t) [with iterator = std::pair<long long unsigned int, long long unsigned int>*; order_type = libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>; base_sort = FixedSizeBaseSort]’ at ./libmaus2/sorting/InPlaceParallelSort.hpp:353:16:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>&}; _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -o libmaus2/rank/la-DNARankMEM.o >/dev/null 2>&1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long unsigned int, IsaTriple>}; _Tp = std::pair<long long unsigned int, IsaTriple>; _Alloc = std::allocator<std::pair<long long unsigned int, IsaTriple> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<long long unsigned int, IsaTriple>; _Alloc = std::allocator<std::pair<long long unsigned int, IsaTriple> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair<long long unsigned int, IsaTriple>; _Sequence = std::vector<std::pair<long long unsigned int, IsaTriple>, std::allocator<std::pair<long long unsigned int, IsaTriple> > >; _Compare = libmaus2::sorting::MergingReadBack<IsaTriple, std::less<IsaTriple> >::HeapOrderAdapter]’ at /usr/include/c++/12/bits/stl_queue.h:748:13,
inlined from ‘libmaus2::sorting::MergingReadBack<_data_type, _order_type>::MergingReadBack(const std::string&, const std::vector<long long unsigned int>&, uint64_t, uint64_t) [with _data_type = IsaTriple; _order_type = std::less<IsaTriple>]’ at ./libmaus2/sorting/MergingReadBack.hpp:174:13:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, IsaTriple>*, std::vector<std::pair<long long unsigned int, IsaTriple>, std::allocator<std::pair<long long unsigned int, IsaTriple> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainAddQueueElement.lo `test -f 'libmaus2/lcs/ChainAddQueueElement.cpp' || echo './'`libmaus2/lcs/ChainAddQueueElement.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainAddQueueElement.o
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const std::string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>]’ at ./libmaus2/sorting/PairFileSorting.hpp:273:16:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const std::string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>]’ at ./libmaus2/sorting/PairFileSorting.hpp:308:14:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -o libmaus2/lcs/la-ChainAddQueueElement.o >/dev/null 2>&1
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const std::string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>]’ at ./libmaus2/sorting/PairFileSorting.hpp:273:16:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const std::string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>]’ at ./libmaus2/sorting/PairFileSorting.hpp:308:14:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-Chain.lo `test -f 'libmaus2/lcs/Chain.cpp' || echo './'`libmaus2/lcs/Chain.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-Chain.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -o libmaus2/lcs/la-Chain.o >/dev/null 2>&1
In file included from /usr/include/c++/12/map:60,
from ./libmaus2/serialize/Serialize.hpp:25,
from ./libmaus2/autoarray/AutoArray.hpp:51:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const libmaus2::huffman::HuffmanTreeInnerNode* const&>, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> >; _Compare = std::less<const libmaus2::huffman::HuffmanTreeInnerNode*>; _Alloc = std::allocator<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<const libmaus2::huffman::HuffmanTreeInnerNode*, std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int>, std::_Select1st<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> >, std::less<const libmaus2::huffman::HuffmanTreeInnerNode*>, std::allocator<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less<const libmaus2::huffman::HuffmanTreeInnerNode*>; _Alloc = std::allocator<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> >]’,
inlined from ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’ at ./libmaus2/huffman/HuffmanTreeInnerNode.hpp:193:71:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<const libmaus2::huffman::HuffmanTreeInnerNode*, std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int>, std::_Select1st<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> >, std::less<const libmaus2::huffman::HuffmanTreeInnerNode*>, std::allocator<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNode.lo `test -f 'libmaus2/lcs/ChainNode.cpp' || echo './'`libmaus2/lcs/ChainNode.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNode.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -o libmaus2/lcs/la-ChainNode.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNodeInfo.lo `test -f 'libmaus2/lcs/ChainNodeInfo.cpp' || echo './'`libmaus2/lcs/ChainNodeInfo.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNodeInfo.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainRemoveQueueElement.lo `test -f 'libmaus2/lcs/ChainRemoveQueueElement.cpp' || echo './'`libmaus2/lcs/ChainRemoveQueueElement.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true]’ at ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1560:26:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -o libmaus2/lcs/la-ChainNodeInfo.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -o libmaus2/lcs/la-ChainRemoveQueueElement.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainSplayTreeNode.lo `test -f 'libmaus2/lcs/ChainSplayTreeNode.cpp' || echo './'`libmaus2/lcs/ChainSplayTreeNode.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-PosixFdOutputStreamFactory.lo `test -f 'libmaus2/aio/PosixFdOutputStreamFactory.cpp' || echo './'`libmaus2/aio/PosixFdOutputStreamFactory.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -o libmaus2/lcs/la-ChainSplayTreeNode.o >/dev/null 2>&1
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<std::__cxx11::basic_ostringstream<char> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:52:27:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<std::__cxx11::basic_ostringstream<char> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:46:18:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<std::__cxx11::basic_ostringstream<char> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:47:27:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_ostringstream<char> > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘virtual void libmaus2::util::MemTempFileContainer::closeOutputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:59:13:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<std::__cxx11::basic_istringstream<char> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > >]’,
inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:68:18:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<std::__cxx11::basic_istringstream<char> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > >]’,
inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:70:18:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<std::__cxx11::basic_istringstream<char> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > >]’,
inlined from ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/MemTempFileContainer.hpp:72:26:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<std::__cxx11::basic_istringstream<char> > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long unsigned int, IsaTriple>}; _Tp = std::pair<long long unsigned int, IsaTriple>; _Alloc = std::allocator<std::pair<long long unsigned int, IsaTriple> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<long long unsigned int, IsaTriple>; _Alloc = std::allocator<std::pair<long long unsigned int, IsaTriple> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair<long long unsigned int, IsaTriple>; _Sequence = std::vector<std::pair<long long unsigned int, IsaTriple>, std::allocator<std::pair<long long unsigned int, IsaTriple> > >; _Compare = libmaus2::sorting::MergingReadBack<IsaTriple, std::less<IsaTriple> >::HeapOrderAdapter]’ at /usr/include/c++/12/bits/stl_queue.h:748:13,
inlined from ‘bool libmaus2::sorting::MergingReadBack<_data_type, _order_type>::getNext(data_type&) [with _data_type = IsaTriple; _order_type = std::less<IsaTriple>]’ at ./libmaus2/sorting/MergingReadBack.hpp:231:13,
inlined from ‘static std::vector<long long unsigned int> libmaus2::sorting::MergingReadBack<_data_type, _order_type>::mergeStep(const std::string&, const std::vector<long long unsigned int>&, uint64_t, uint64_t) [with _data_type = IsaTriple; _order_type = std::less<IsaTriple>]’ at ./libmaus2/sorting/MergingReadBack.hpp:196:25:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, IsaTriple>*, std::vector<std::pair<long long unsigned int, IsaTriple>, std::allocator<std::pair<long long unsigned int, IsaTriple> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapHeader.lo `test -f 'libmaus2/dazzler/align/OverlapHeader.cpp' || echo './'`libmaus2/dazzler/align/OverlapHeader.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapHeader.o
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = true; bool keepsecond = true]’ at ./libmaus2/sorting/PairFileSorting.hpp:438:15:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = true; bool keepsecond = true]’ at ./libmaus2/sorting/PairFileSorting.hpp:491:13:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static std::vector<N> libmaus2::util::NumberSerialisation::deserialiseNumberVector(std::istream&) [with N = long long unsigned int]’ at ./libmaus2/util/NumberSerialisation.hpp:175:31,
inlined from ‘static std::vector<long long unsigned int> libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::loadIndex(const std::string&) [with _rank_type = libmaus2::rank::ImpCacheLineRank]’ at ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:160:89,
inlined from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::unique_ptr_type libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::load(const std::string&, uint64_t) [with _rank_type = libmaus2::rank::ImpCacheLineRank]’ at ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:267:33:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = true; bool keepsecond = false]’ at ./libmaus2/sorting/PairFileSorting.hpp:438:15:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = true; bool keepsecond = false]’ at ./libmaus2/sorting/PairFileSorting.hpp:491:13:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::OutputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::OutputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::OutputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::InputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >]’,
inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::InputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >]’,
inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = false; bool keepsecond = true]’ at ./libmaus2/sorting/PairFileSorting.hpp:438:15:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = false; bool keepsecond = true]’ at ./libmaus2/sorting/PairFileSorting.hpp:491:13:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = true; bool keepsecond = true]’ at ./libmaus2/sorting/PairFileSorting.hpp:438:15:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = true; bool keepsecond = true]’ at ./libmaus2/sorting/PairFileSorting.hpp:491:13:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -o libmaus2/dazzler/align/la-OverlapHeader.o >/dev/null 2>&1
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = true; bool keepsecond = false]’ at ./libmaus2/sorting/PairFileSorting.hpp:438:15:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = true; bool keepsecond = false]’ at ./libmaus2/sorting/PairFileSorting.hpp:491:13:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = false; bool keepsecond = true]’ at ./libmaus2/sorting/PairFileSorting.hpp:438:15:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = false; bool keepsecond = true]’ at ./libmaus2/sorting/PairFileSorting.hpp:491:13:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long unsigned int>}; _Tp = std::pair<std::__cxx11::basic_string<char>, long long unsigned int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long unsigned int>}; _Tp = std::pair<std::__cxx11::basic_string<char>, long long unsigned int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<std::__cxx11::basic_string<char>, long long unsigned int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘_ZN8libmaus27wavelet49ImpExternalWaveletGeneratorCompactHuffmanParallel17createFinalStreamISoEEyRT_y._omp_fn.0’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp:253:24:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = false; bool keepsecond = false]’ at ./libmaus2/sorting/PairFileSorting.hpp:438:15:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = false; bool keepsecond = false]’ at ./libmaus2/sorting/PairFileSorting.hpp:491:13:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignment.lo `test -f 'libmaus2/bambam/BamAlignment.cpp' || echo './'`libmaus2/bambam/BamAlignment.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignment.o
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector<MergeStepRecSerialRequest<iterator, order_type, base_sort> >&, uint64_t) [with iterator = std::pair<long long unsigned int, long long unsigned int>*; order_type = libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>; base_sort = FixedSizeBaseSort]’ at ./libmaus2/sorting/InPlaceParallelSort.hpp:371:22,
inlined from ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector<MergeStepRecSerialRequest<iterator, order_type, base_sort> >&, uint64_t) [with iterator = std::pair<long long unsigned int, long long unsigned int>*; order_type = libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>; base_sort = FixedSizeBaseSort]’ at ./libmaus2/sorting/InPlaceParallelSort.hpp:353:16,
inlined from ‘static void libmaus2::sorting::InPlaceParallelSort::inplacesort2(iterator, iterator, order_type, base_sort&, uint64_t) [with iterator = std::pair<long long unsigned int, long long unsigned int>*; order_type = libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>; base_sort = FixedSizeBaseSort]’ at ./libmaus2/sorting/InPlaceParallelSort.hpp:671:24,
inlined from ‘static void libmaus2::sorting::PairFileSorting::sortPairFileTemplate(const std::vector<std::__cxx11::basic_string<char> >&, const std::string&, bool, bool, bool, out_type&, uint64_t, uint64_t, bool, uint64_t, std::ostream*) [with out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>]’ at ./libmaus2/sorting/PairFileSorting.hpp:681:60:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::SecondComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector<MergeStepRecSerialRequest<iterator, order_type, base_sort> >&, uint64_t) [with iterator = std::pair<long long unsigned int, long long unsigned int>*; order_type = libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>; base_sort = FixedSizeBaseSort]’ at ./libmaus2/sorting/InPlaceParallelSort.hpp:371:22,
inlined from ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector<MergeStepRecSerialRequest<iterator, order_type, base_sort> >&, uint64_t) [with iterator = std::pair<long long unsigned int, long long unsigned int>*; order_type = libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>; base_sort = FixedSizeBaseSort]’ at ./libmaus2/sorting/InPlaceParallelSort.hpp:353:16,
inlined from ‘static void libmaus2::sorting::InPlaceParallelSort::inplacesort2(iterator, iterator, order_type, base_sort&, uint64_t) [with iterator = std::pair<long long unsigned int, long long unsigned int>*; order_type = libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>; base_sort = FixedSizeBaseSort]’ at ./libmaus2/sorting/InPlaceParallelSort.hpp:671:24,
inlined from ‘static void libmaus2::sorting::PairFileSorting::sortPairFileTemplate(const std::vector<std::__cxx11::basic_string<char> >&, const std::string&, bool, bool, bool, out_type&, uint64_t, uint64_t, bool, uint64_t, std::ostream*) [with out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>]’ at ./libmaus2/sorting/PairFileSorting.hpp:684:60:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator<libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest<std::pair<long long unsigned int, long long unsigned int>*, libmaus2::sorting::PairFileSorting::FirstComp<long long unsigned int, long long unsigned int>, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = false; bool keepsecond = false]’ at ./libmaus2/sorting/PairFileSorting.hpp:438:15,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriples(uint64_t, const std::string&, uint64_t, bool, bool, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>]’ at ./libmaus2/sorting/PairFileSorting.hpp:527:65,
inlined from ‘static void libmaus2::sorting::PairFileSorting::sortPairFileTemplate(const std::vector<std::__cxx11::basic_string<char> >&, const std::string&, bool, bool, bool, out_type&, uint64_t, uint64_t, bool, uint64_t, std::ostream*) [with out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>]’ at ./libmaus2/sorting/PairFileSorting.hpp:736:82:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Alloc = std::allocator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >]’,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Sequence = std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> >; _Compare = libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>]’ at /usr/include/c++/12/bits/stl_queue.h:740:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const std::string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>; bool keepfirst = false; bool keepsecond = false]’ at ./libmaus2/sorting/PairFileSorting.hpp:491:13,
inlined from ‘static void libmaus2::sorting::PairFileSorting::mergeTriples(uint64_t, const std::string&, uint64_t, bool, bool, out_type&, uint64_t, std::ostream*) [with comparator_type = TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int>; out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>]’ at ./libmaus2/sorting/PairFileSorting.hpp:527:65,
inlined from ‘static void libmaus2::sorting::PairFileSorting::sortPairFileTemplate(const std::vector<std::__cxx11::basic_string<char> >&, const std::string&, bool, bool, bool, out_type&, uint64_t, uint64_t, bool, uint64_t, std::ostream*) [with out_type = libmaus2::aio::SynchronousGenericOutput<long long unsigned int>]’ at ./libmaus2/sorting/PairFileSorting.hpp:736:82:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -o libmaus2/aio/la-PosixFdOutputStreamFactory.o >/dev/null 2>&1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {QueueElement}; _Tp = QueueElement; _Alloc = std::allocator<QueueElement>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = QueueElement; _Alloc = std::allocator<QueueElement>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = QueueElement; _Sequence = std::vector<QueueElement, std::allocator<QueueElement> >; _Compare = std::less<QueueElement>]’ at /usr/include/c++/12/bits/stl_queue.h:748:13,
inlined from ‘static void libmaus2::suffixsort::bwtb3m::BwtSelectSSA::computeSSA(std::vector<std::__cxx11::basic_string<char> >, const std::string&, const std::string&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&, std::string, bool, uint64_t, uint64_t, uint64_t, uint64_t, std::ostream*)’ at libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:1032:13:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<QueueElement*, std::vector<QueueElement, std::allocator<QueueElement> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {QueueElement}; _Tp = QueueElement; _Alloc = std::allocator<QueueElement>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = QueueElement; _Alloc = std::allocator<QueueElement>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = QueueElement; _Sequence = std::vector<QueueElement, std::allocator<QueueElement> >; _Compare = std::less<QueueElement>]’ at /usr/include/c++/12/bits/stl_queue.h:748:13,
inlined from ‘static void libmaus2::suffixsort::bwtb3m::BwtSelectSSA::computeSSA(std::vector<std::__cxx11::basic_string<char> >, const std::string&, const std::string&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&, std::string, bool, uint64_t, uint64_t, uint64_t, uint64_t, std::ostream*)’ at libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:1059:13:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<QueueElement*, std::vector<QueueElement, std::allocator<QueueElement> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less<const libmaus2::huffman::HuffmanTreeInnerNode*>; _Alloc = std::allocator<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> >]’,
inlined from ‘libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::ImpExternalWaveletGeneratorHuffman(const libmaus2::huffman::HuffmanTreeNode*, libmaus2::util::TempFileContainer&)’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp:117:23:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<const libmaus2::huffman::HuffmanTreeInnerNode*, std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int>, std::_Select1st<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> >, std::less<const libmaus2::huffman::HuffmanTreeInnerNode*>, std::allocator<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Tp = long long unsigned int; _Compare = std::less<const libmaus2::huffman::HuffmanTreeInnerNode*>; _Alloc = std::allocator<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> >]’,
inlined from ‘void libmaus2::wavelet::ImpHuffmanWaveletTree::init()’ at ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:168:23:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<const libmaus2::huffman::HuffmanTreeInnerNode*, std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int>, std::_Select1st<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> >, std::less<const libmaus2::huffman::HuffmanTreeInnerNode*>, std::allocator<std::pair<const libmaus2::huffman::HuffmanTreeInnerNode* const, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::createFinalStream(stream_type&) [with stream_type = std::__cxx11::basic_ostringstream<char>]’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp:205:26,
inlined from ‘libmaus2::util::ImpCompactNumberArray::unique_ptr_type libmaus2::util::ImpCompactNumberArrayGenerator::createFinal()’ at ./libmaus2/util/ImpCompactNumberArray.hpp:193:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static std::vector<N> libmaus2::util::NumberSerialisation::deserialiseNumberVector(std::istream&) [with N = long long unsigned int]’ at ./libmaus2/util/NumberSerialisation.hpp:175:31,
inlined from ‘libmaus2::wavelet::ImpHuffmanWaveletTree::ImpHuffmanWaveletTree(stream_type&) [with stream_type = std::__cxx11::basic_istringstream<char>]’ at ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:252:13,
inlined from ‘libmaus2::util::ImpCompactNumberArray::unique_ptr_type libmaus2::util::ImpCompactNumberArrayGenerator::createFinal()’ at ./libmaus2/util/ImpCompactNumberArray.hpp:197:101:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long unsigned int, IsaTriple>}; _Tp = std::pair<long long unsigned int, IsaTriple>; _Alloc = std::allocator<std::pair<long long unsigned int, IsaTriple> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<long long unsigned int, IsaTriple>; _Alloc = std::allocator<std::pair<long long unsigned int, IsaTriple> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair<long long unsigned int, IsaTriple>; _Sequence = std::vector<std::pair<long long unsigned int, IsaTriple>, std::allocator<std::pair<long long unsigned int, IsaTriple> > >; _Compare = libmaus2::sorting::MergingReadBack<IsaTriple, std::less<IsaTriple> >::HeapOrderAdapter]’ at /usr/include/c++/12/bits/stl_queue.h:748:13,
inlined from ‘bool libmaus2::sorting::MergingReadBack<_data_type, _order_type>::getNext(data_type&) [with _data_type = IsaTriple; _order_type = std::less<IsaTriple>]’ at ./libmaus2/sorting/MergingReadBack.hpp:231:13,
inlined from ‘_ZN8libmaus210suffixsort6bwtb3m12BwtSelectSSA10computeSSAESt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS9_EERKS9_SD_SD_RKSB_S9_byyyyPSo._omp_fn.0’ at libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:970:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, IsaTriple>*, std::vector<std::pair<long long unsigned int, IsaTriple>, std::allocator<std::pair<long long unsigned int, IsaTriple> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static std::vector<N> libmaus2::util::NumberSerialisation::deserialiseNumberVector(std::istream&) [with N = long long unsigned int]’ at ./libmaus2/util/NumberSerialisation.hpp:175:31,
inlined from ‘libmaus2::wavelet::ImpHuffmanWaveletTree::ImpHuffmanWaveletTree(stream_type&) [with stream_type = libmaus2::aio::InputStreamInstance]’ at ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:252:13,
inlined from ‘void libmaus2::util::ImpCompactNumberArray::deserialise(stream_type&) [with stream_type = libmaus2::aio::InputStreamInstance]’ at ./libmaus2/util/ImpCompactNumberArray.hpp:87:69,
inlined from ‘static libmaus2::util::ImpCompactNumberArray::unique_ptr_type libmaus2::util::ImpCompactNumberArray::load(stream_type&) [with stream_type = libmaus2::aio::InputStreamInstance]’ at ./libmaus2/util/ImpCompactNumberArray.hpp:105:19,
inlined from ‘libmaus2::rmq::RMMTree<_base_layer_type, _klog, _rmmtreedebug>::RMMTree(stream_type&, const base_layer_type&) [with stream_type = libmaus2::aio::InputStreamInstance; _base_layer_type = libmaus2::lcp::SuccinctLCP<libmaus2::lf::ImpCompactHuffmanWaveletLFTemplate<libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<libmaus2::rank::ImpCacheLineRank> >, libmaus2::fm::SimpleSampledSA<libmaus2::lf::ImpCompactHuffmanWaveletLFTemplate<libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<libmaus2::rank::ImpCacheLineRank> > >, libmaus2::fm::SampledISA<libmaus2::lf::ImpCompactHuffmanWaveletLFTemplate<libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<libmaus2::rank::ImpCacheLineRank> > > >; unsigned int _klog = 3; bool _rmmtreedebug = false]’ at ./libmaus2/rmq/RMMTree.hpp:104:17:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -o libmaus2/bambam/la-BamAlignment.o >/dev/null 2>&1
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffmanParallel::createFinalStream(stream_type&, uint64_t) [with stream_type = std::basic_ostream<char>]’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp:292:26,
inlined from ‘void libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffmanParallel::createFinalStream(const std::string&, uint64_t)’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp:378:22,
inlined from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<libmaus2::rank::ImpCacheLineRank>::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder]’ at ./libmaus2/wavelet/RlToHwtBase.hpp:1480:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/map:60,
from ./libmaus2/serialize/Serialize.hpp:25,
from ./libmaus2/autoarray/AutoArray.hpp:51,
from ./libmaus2/util/StringSerialisation.hpp:30,
from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:26,
from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:23,
from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp:21,
from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:18:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>, std::_Select1st<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >]’,
inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map<long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>, std::_Select1st<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >]’,
inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map<long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>, std::_Select1st<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from ./libmaus2/stacktrace/StackTrace.hpp:33,
from ./libmaus2/exception/LibMausException.hpp:25,
from ./libmaus2/util/NumberSerialisation.hpp:28,
from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequestQueryObject.hpp:24,
from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:22:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {libmaus2::suffixsort::BwtMergeZBlock}; _Tp = libmaus2::suffixsort::BwtMergeZBlock; _Alloc = std::allocator<libmaus2::suffixsort::BwtMergeZBlock>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::suffixsort::BwtMergeZBlock>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-InputOutputStreamInstance.lo `test -f 'libmaus2/aio/InputOutputStreamInstance.cpp' || echo './'`libmaus2/aio/InputOutputStreamInstance.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-InputOutputStreamInstance.o
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::suffixsort::BwtMergeZBlock}; _Tp = libmaus2::suffixsort::BwtMergeZBlock; _Alloc = std::allocator<libmaus2::suffixsort::BwtMergeZBlock>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = libmaus2::suffixsort::BwtMergeZBlock; _Alloc = std::allocator<libmaus2::suffixsort::BwtMergeZBlock>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillGapRequestObjects(uint64_t)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:165:34:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::suffixsort::BwtMergeZBlock*, std::vector<libmaus2::suffixsort::BwtMergeZBlock> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -o libmaus2/aio/la-InputOutputStreamInstance.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapInfo.lo `test -f 'libmaus2/dazzler/align/OverlapInfo.cpp' || echo './'`libmaus2/dazzler/align/OverlapInfo.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapInfo.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -o libmaus2/dazzler/align/la-OverlapInfo.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -o libmaus2/dazzler/align/la-OverlapDataInterface.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/PathTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-PathTools.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/OFStreamOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OFStreamOutputStreamFactory.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/PathTools.cpp -o libmaus2/util/la-PathTools.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/OFStreamOutputStreamFactory.cpp -o libmaus2/aio/la-OFStreamOutputStreamFactory.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/PosixFdInput.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-PosixFdInput.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lz/la-BgzfDeflateHeaderFunctions.lo `test -f 'libmaus2/lz/BgzfDeflateHeaderFunctions.cpp' || echo './'`libmaus2/lz/BgzfDeflateHeaderFunctions.cpp
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/BgzfDeflateZStreamBase.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-BgzfDeflateZStreamBase.o
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/SecrecyInputStreamFactory.cpp -o libmaus2/aio/la-SecrecyInputStreamFactory.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c -o libmaus2/bambam/la-Scram.lo `test -f 'libmaus2/bambam/Scram.c' || echo './'`libmaus2/bambam/Scram.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c libmaus2/bambam/Scram.c -fPIC -DPIC -o libmaus2/bambam/.libs/la-Scram.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c libmaus2/bambam/Scram.c -o libmaus2/bambam/la-Scram.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-ScramCramEncoding.lo `test -f 'libmaus2/bambam/parallel/ScramCramEncoding.cpp' || echo './'`libmaus2/bambam/parallel/ScramCramEncoding.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/parallel/ScramCramEncoding.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-ScramCramEncoding.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/parallel/ScramCramEncoding.cpp -o libmaus2/bambam/parallel/la-ScramCramEncoding.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaBase.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -o libmaus2/aio/la-SecrecyOutputStreamFactory.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaParallelBase.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeParallelGapFragMerge.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte32.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.o >/dev/null 2>&1
In file included from /usr/include/c++/12/vector:70,
from ./libmaus2/huffman/IndexWriter.hpp:22,
from ./libmaus2/huffman/RLEncoder.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.hpp:22,
from libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp:19:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::huffman::IndexEntry>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/ChecksumsFactory.cpp -o libmaus2/bambam/la-ChecksumsFactory.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz432.o
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void libmaus2::huffman::RLEncoderBaseTemplate<_bit_writer_type>::implicitFlush() [with _bit_writer_type = libmaus2::huffman::HuffmanEncoderFileTemplate<libmaus2::aio::SynchronousGenericOutput<unsigned char>, libmaus2::bitio::FastWriteBitWriterTemplate<unsigned char, libmaus2::aio::PutOutputIterator<unsigned char, libmaus2::aio::SynchronousGenericOutput<unsigned char> >, 128, 255, false> >]’ at ./libmaus2/huffman/RLEncoder.hpp:128:21:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::huffman::IndexEntry*, std::vector<libmaus2::huffman::IndexEntry> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from ./libmaus2/autoarray/AutoArray.hpp:35,
from ./libmaus2/math/numbits.hpp:24,
from ./libmaus2/huffman/IndexWriter.hpp:24,
from ./libmaus2/huffman/RLEncoder.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22,
from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:20:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
135 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from ./libmaus2/autoarray/AutoArray.hpp:35,
from ./libmaus2/math/numbits.hpp:24,
from ./libmaus2/huffman/IndexWriter.hpp:24,
from ./libmaus2/huffman/RLEncoder.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22,
from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:20:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
135 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.o >/dev/null 2>&1
during GIMPLE pass: thread
In file included from /usr/include/c++/12/vector:64,
from ./libmaus2/huffman/IndexWriter.hpp:22:
/usr/include/c++/12/bits/stl_vector.h: In function ‘std::vector<_Tp, _Alloc>::vector(size_type, const allocator_type&) [with _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’:
/usr/include/c++/12/bits/stl_vector.h:551:7: internal compiler error: Bus error
551 | vector(size_type __n, const allocator_type& __a = allocator_type())
| ^~~~~~
0x137a0d7 internal_error(char const*, ...)
???:0
0x46f95b ggc_internal_alloc(unsigned int, void (*)(void*), unsigned int, unsigned int)
???:0
0xb6fa63 copy_node(tree_node*)
???:0
0x96ee77 copy_tree_r(tree_node**, int*, void*)
???:0
0xb789c7 walk_tree_1(tree_node**, tree_node* (*)(tree_node**, int*, void*), void*, hash_set<tree_node*, false, default_hash_traits<tree_node*> >*, tree_node* (*)(tree_node**, int*, tree_node* (*)(tree_node**, int*, void*), void*, hash_set<tree_node*, false, default_hash_traits<tree_node*> >*))
???:0
0x66873b unshare_expr(tree_node*)
???:0
0x62cbef gimple_copy(gimple*)
???:0
0x4b8bf3 duplicate_block(basic_block_def*, edge_def*, basic_block_def*, copy_bb_data*)
???:0
0x4b93cf copy_bbs(basic_block_def**, unsigned int, basic_block_def**, edge_def**, unsigned int, edge_def**, loop*, basic_block_def*, bool)
???:0
0xae468b back_jt_path_registry::duplicate_thread_path(edge_def*, edge_def*, basic_block_def**, unsigned int, unsigned int)
???:0
0xae6833 back_jt_path_registry::update_cfg(bool)
???:0
0xae516b jt_path_registry::thread_through_all_blocks(bool)
???:0
0xadc6c7 back_threader::thread_blocks()
???:0
Please submit a full bug report, with preprocessed source (by using -freport-bug).
Please include the complete backtrace with any bug report.
See <file:///usr/share/doc/gcc-12/README.Bugs> for instructions.
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>*, vector<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>, allocator<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry> > > >; _Distance = int; _Tp = pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::SerialisingMergingReadBack<libmaus2::util::DirectoryStructure::DirectoryEntry, less<libmaus2::util::DirectoryStructure::DirectoryEntry> >::HeapOrderAdapter>]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>*, std::vector<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>, std::allocator<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>*, vector<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>, allocator<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry> > > >; _Distance = int; _Tp = pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::SerialisingMergingReadBack<libmaus2::util::DirectoryStructure::DirectoryEntry, libmaus2::util::DirectoryStructure::DirectoryEntryRevComp>::HeapOrderAdapter>]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>*, std::vector<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>, std::allocator<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::gamma::SparseGammaGapMultiFile*, vector<libmaus2::gamma::SparseGammaGapMultiFile, allocator<libmaus2::gamma::SparseGammaGapMultiFile> > >; _Distance = int; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Compare = __gnu_cxx::__ops::_Iter_comp_val<less<libmaus2::gamma::SparseGammaGapMultiFile> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::gamma::SparseGammaGapMultiFile*, std::vector<libmaus2::gamma::SparseGammaGapMultiFile, std::allocator<libmaus2::gamma::SparseGammaGapMultiFile> > >’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:70,
from ./libmaus2/huffman/IndexWriter.hpp:22:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const libmaus2::huffman::IndexEntry&}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::huffman::IndexEntry>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long unsigned int, long long unsigned int> >::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::huffman::IndexEntry>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {libmaus2::suffixsort::BwtMergeZBlock}; _Tp = libmaus2::suffixsort::BwtMergeZBlock; _Alloc = std::allocator<libmaus2::suffixsort::BwtMergeZBlock>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::suffixsort::BwtMergeZBlock>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffman::createFinalStream(stream_type&) [with stream_type = libmaus2::aio::OutputStreamInstance]’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp:194:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’,
inlined from ‘uint64_t libmaus2::gamma::GammaGapEncoder::encodeInternal(iterator, uint64_t, uint64_t) [with iterator = const std::atomic<unsigned int>*]’ at ./libmaus2/gamma/GammaGapEncoder.hpp:112:21:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::huffman::IndexEntry*, std::vector<libmaus2::huffman::IndexEntry> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffmanParallel::createFinalStream(stream_type&, uint64_t) [with stream_type = std::basic_ostream<char>]’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp:292:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’,
inlined from ‘static void libmaus2::huffman::RLEncoderTemplate<_huffmanencoderfile_type>::appendTemplate(out_type&, const std::string&, std::vector<libmaus2::huffman::IndexEntry>&) [with out_type = libmaus2::huffman::HuffmanEncoderFileTemplate<libmaus2::aio::SynchronousGenericOutput<unsigned char>, libmaus2::bitio::FastWriteBitWriterTemplate<unsigned char, libmaus2::aio::PutOutputIterator<unsigned char, libmaus2::aio::SynchronousGenericOutput<unsigned char> >, 128, 255, false> >; _huffmanencoderfile_type = libmaus2::huffman::HuffmanEncoderFileTemplate<libmaus2::aio::SynchronousGenericOutput<unsigned char>, libmaus2::bitio::FastWriteBitWriterTemplate<unsigned char, libmaus2::aio::PutOutputIterator<unsigned char, libmaus2::aio::SynchronousGenericOutput<unsigned char> >, 128, 255, false> >]’ at ./libmaus2/huffman/RLEncoder.hpp:338:22,
inlined from ‘static void libmaus2::huffman::RLEncoderTemplate<_huffmanencoderfile_type>::concatenate(const std::vector<std::__cxx11::basic_string<char> >&, const std::string&, bool) [with _huffmanencoderfile_type = libmaus2::huffman::HuffmanEncoderFileTemplate<libmaus2::aio::SynchronousGenericOutput<unsigned char>, libmaus2::bitio::FastWriteBitWriterTemplate<unsigned char, libmaus2::aio::PutOutputIterator<unsigned char, libmaus2::aio::SynchronousGenericOutput<unsigned char> >, 128, 255, false> >]’ at ./libmaus2/huffman/RLEncoder.hpp:367:20:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::huffman::IndexEntry*, std::vector<libmaus2::huffman::IndexEntry> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’,
inlined from ‘uint64_t libmaus2::gamma::GammaGapEncoder::encodeInternal(iterator, uint64_t, uint64_t) [with iterator = libmaus2::suffixsort::GapArrayByteDecoderBuffer::iterator]’ at ./libmaus2/gamma/GammaGapEncoder.hpp:112:21,
inlined from ‘void libmaus2::gamma::GammaGapEncoder::encode(iterator, uint64_t) [with iterator = libmaus2::suffixsort::GapArrayByteDecoderBuffer::iterator]’ at ./libmaus2/gamma/GammaGapEncoder.hpp:185:63,
inlined from ‘void libmaus2::suffixsort::GapArrayByte::saveGammaGapArray(const std::string&)’ at ./libmaus2/suffixsort/GapArrayByte.hpp:292:14:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::huffman::IndexEntry*, std::vector<libmaus2::huffman::IndexEntry> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/map:60,
from ./libmaus2/serialize/Serialize.hpp:25,
from ./libmaus2/autoarray/AutoArray.hpp:51:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>, std::_Select1st<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >]’,
inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map<long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>, std::_Select1st<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >]’,
inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map<long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>, std::_Select1st<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long unsigned int>}; _Tp = std::pair<std::__cxx11::basic_string<char>, long long unsigned int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long unsigned int>}; _Tp = std::pair<std::__cxx11::basic_string<char>, long long unsigned int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<std::__cxx11::basic_string<char>, long long unsigned int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘_ZN8libmaus27wavelet49ImpExternalWaveletGeneratorCompactHuffmanParallel17createFinalStreamISoEEyRT_y._omp_fn.0’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp:253:24:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘static std::vector<long long unsigned int> libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder::getSplitKeysInternal(const libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder&, const libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder&, uint64_t, uint64_t)’ at ./libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp:345:21:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::OutputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::OutputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::OutputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::InputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >]’,
inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::InputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >]’,
inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
during GIMPLE pass: vrp
In file included from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44:
./libmaus2/wavelet/RlToHwtBase.hpp: In function ‘_ZN8libmaus27wavelet11RlToHwtBaseILb0ENS_7huffman9RLDecoderEE24rlToHwtTermSmallAlphabetIjEESt10unique_ptrINS0_36ImpCompactHuffmanWaveletTreeTemplateINS_4rank16ImpCacheLineRankEEESt14default_deleteISA_EERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISK_EERKSK_yyy._omp_fn.2’:
./libmaus2/wavelet/RlToHwtBase.hpp:486:41: internal compiler error: Bus error
486 | #pragma omp parallel num_threads(numthreads)
| ^~~
0x137a0d7 internal_error(char const*, ...)
???:0
0xb7d3bb hash_table<int_cst_hasher, false, xcallocator>::find_slot_with_hash(tree_node* const&, unsigned int, insert_option)
???:0
0xb8437b irange::irange_set_anti_range(tree_node*, tree_node*)
???:0
0xb831b3 irange::operator=(irange const&)
???:0
0xb88c87 irange::intersect(irange const*)
???:0
0x12c61c3 operator_lshift::fold_range(irange&, tree_node*, irange const&, irange const&, tree_code) const
???:0
0xb5f3db range_fold_binary_expr(int_range<1u>*, tree_code, tree_node*, int_range<1u> const*, int_range<1u> const*)
???:0
0xbc7643 vr_values::extract_range_from_binary_expr(value_range_equiv*, tree_code, tree_node*, tree_node*, tree_node*)
???:0
0xbc9123 vr_values::extract_range_from_assignment(value_range_equiv*, gassign*)
???:0
0xb5588b vrp_prop::visit_stmt(gimple*, edge_def**, tree_node**)
???:0
0xa7c86b ssa_propagation_engine::simulate_stmt(gimple*)
???:0
0xa7cb13 ssa_propagation_engine::simulate_block(basic_block_def*)
???:0
0xa7cfb7 ssa_propagation_engine::ssa_propagate()
???:0
Please submit a full bug report, with preprocessed source (by using -freport-bug).
Please include the complete backtrace with any bug report.
See <file:///usr/share/doc/gcc-12/README.Bugs> for instructions.
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm32.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact32.o
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from ./libmaus2/autoarray/AutoArray.hpp:35,
from ./libmaus2/math/numbits.hpp:24,
from ./libmaus2/huffman/IndexWriter.hpp:24,
from ./libmaus2/huffman/RLEncoder.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22,
from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:20:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
135 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>*, vector<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>, allocator<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry> > > >; _Distance = int; _Tp = pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::SerialisingMergingReadBack<libmaus2::util::DirectoryStructure::DirectoryEntry, libmaus2::util::DirectoryStructure::DirectoryEntryRevComp>::HeapOrderAdapter>]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>*, std::vector<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>, std::allocator<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>*, vector<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>, allocator<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry> > > >; _Distance = int; _Tp = pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::SerialisingMergingReadBack<libmaus2::util::DirectoryStructure::DirectoryEntry, less<libmaus2::util::DirectoryStructure::DirectoryEntry> >::HeapOrderAdapter>]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>*, std::vector<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>, std::allocator<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::gamma::SparseGammaGapMultiFile*, vector<libmaus2::gamma::SparseGammaGapMultiFile, allocator<libmaus2::gamma::SparseGammaGapMultiFile> > >; _Distance = int; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Compare = __gnu_cxx::__ops::_Iter_comp_val<less<libmaus2::gamma::SparseGammaGapMultiFile> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::gamma::SparseGammaGapMultiFile*, std::vector<libmaus2::gamma::SparseGammaGapMultiFile, std::allocator<libmaus2::gamma::SparseGammaGapMultiFile> > >’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:70,
from ./libmaus2/huffman/IndexWriter.hpp:22:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const libmaus2::huffman::IndexEntry&}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::huffman::IndexEntry>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long unsigned int, long long unsigned int> >::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::huffman::IndexEntry>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {libmaus2::suffixsort::BwtMergeZBlock}; _Tp = libmaus2::suffixsort::BwtMergeZBlock; _Alloc = std::allocator<libmaus2::suffixsort::BwtMergeZBlock>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::suffixsort::BwtMergeZBlock>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffman::createFinalStream(stream_type&) [with stream_type = libmaus2::aio::OutputStreamInstance]’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp:194:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’,
inlined from ‘uint64_t libmaus2::gamma::GammaGapEncoder::encodeInternal(iterator, uint64_t, uint64_t) [with iterator = const std::atomic<unsigned int>*]’ at ./libmaus2/gamma/GammaGapEncoder.hpp:112:21:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::huffman::IndexEntry*, std::vector<libmaus2::huffman::IndexEntry> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffmanParallel::createFinalStream(stream_type&, uint64_t) [with stream_type = std::basic_ostream<char>]’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp:292:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
during IPA pass: inline
In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:22,
from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44:
./libmaus2/autoarray/AutoArray2d.hpp: In function ‘libmaus2::autoarray::AutoArray2d<_N, _atype>::N& libmaus2::autoarray::AutoArray2d<_N, _atype>::at(uint64_t, uint64_t) [with _N = long long unsigned int; libmaus2::autoarray::alloc_type _atype = libmaus2::autoarray::alloc_type_cxx]’:
./libmaus2/autoarray/AutoArray2d.hpp:103:52: internal compiler error: Bus error
103 | return A.at(i*m+j);
| ~~~~^~~~~~~
0x137a0d7 internal_error(char const*, ...)
???:0
0x97d6cb optimize_inline_calls(tree_node*)
???:0
0x6e4a9f inline_transform(cgraph_node*)
???:0
0x83273f execute_all_ipa_transforms(bool)
???:0
0x4ebcb3 cgraph_node::expand()
???:0
0x4efa33 symbol_table::finalize_compilation_unit()
???:0
Please submit a full bug report, with preprocessed source (by using -freport-bug).
Please include the complete backtrace with any bug report.
See <file:///usr/share/doc/gcc-12/README.Bugs> for instructions.
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from ./libmaus2/autoarray/AutoArray.hpp:35,
from ./libmaus2/math/numbits.hpp:24,
from ./libmaus2/huffman/IndexWriter.hpp:24,
from ./libmaus2/huffman/RLEncoder.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22,
from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22,
from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:20:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::PairFileSorting::TripleFirstComparator<long long unsigned int, long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
135 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::PairFileSorting::TripleSecondComparator<long long unsigned int, long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int>*, std::vector<libmaus2::sorting::PairFileSorting::Triple<long long unsigned int, long long unsigned int, long long unsigned int> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>*, vector<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>, allocator<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry> > > >; _Distance = int; _Tp = pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::SerialisingMergingReadBack<libmaus2::util::DirectoryStructure::DirectoryEntry, less<libmaus2::util::DirectoryStructure::DirectoryEntry> >::HeapOrderAdapter>]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>*, std::vector<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>, std::allocator<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>*, vector<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>, allocator<pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry> > > >; _Distance = int; _Tp = pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<libmaus2::sorting::SerialisingMergingReadBack<libmaus2::util::DirectoryStructure::DirectoryEntry, libmaus2::util::DirectoryStructure::DirectoryEntryRevComp>::HeapOrderAdapter>]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>*, std::vector<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry>, std::allocator<std::pair<long long unsigned int, libmaus2::util::DirectoryStructure::DirectoryEntry> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<libmaus2::gamma::SparseGammaGapMultiFile*, vector<libmaus2::gamma::SparseGammaGapMultiFile, allocator<libmaus2::gamma::SparseGammaGapMultiFile> > >; _Distance = int; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Compare = __gnu_cxx::__ops::_Iter_comp_val<less<libmaus2::gamma::SparseGammaGapMultiFile> >]’:
/usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::gamma::SparseGammaGapMultiFile*, std::vector<libmaus2::gamma::SparseGammaGapMultiFile, std::allocator<libmaus2::gamma::SparseGammaGapMultiFile> > >’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:70,
from ./libmaus2/huffman/IndexWriter.hpp:22:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const libmaus2::huffman::IndexEntry&}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::huffman::IndexEntry>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long unsigned int, long long unsigned int> >::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::huffman::IndexEntry>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {libmaus2::suffixsort::BwtMergeZBlock}; _Tp = libmaus2::suffixsort::BwtMergeZBlock; _Alloc = std::allocator<libmaus2::suffixsort::BwtMergeZBlock>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<libmaus2::suffixsort::BwtMergeZBlock>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffman::createFinalStream(stream_type&) [with stream_type = libmaus2::aio::OutputStreamInstance]’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp:194:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’,
inlined from ‘uint64_t libmaus2::gamma::GammaGapEncoder::encodeInternal(iterator, uint64_t, uint64_t) [with iterator = const std::atomic<unsigned int>*]’ at ./libmaus2/gamma/GammaGapEncoder.hpp:112:21:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::huffman::IndexEntry*, std::vector<libmaus2::huffman::IndexEntry> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffmanParallel::createFinalStream(stream_type&, uint64_t) [with stream_type = std::basic_ostream<char>]’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp:292:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’,
inlined from ‘static void libmaus2::huffman::RLEncoderTemplate<_huffmanencoderfile_type>::appendTemplate(out_type&, const std::string&, std::vector<libmaus2::huffman::IndexEntry>&) [with out_type = libmaus2::huffman::HuffmanEncoderFileTemplate<libmaus2::aio::SynchronousGenericOutput<unsigned char>, libmaus2::bitio::FastWriteBitWriterTemplate<unsigned char, libmaus2::aio::PutOutputIterator<unsigned char, libmaus2::aio::SynchronousGenericOutput<unsigned char> >, 128, 255, false> >; _huffmanencoderfile_type = libmaus2::huffman::HuffmanEncoderFileTemplate<libmaus2::aio::SynchronousGenericOutput<unsigned char>, libmaus2::bitio::FastWriteBitWriterTemplate<unsigned char, libmaus2::aio::PutOutputIterator<unsigned char, libmaus2::aio::SynchronousGenericOutput<unsigned char> >, 128, 255, false> >]’ at ./libmaus2/huffman/RLEncoder.hpp:338:22,
inlined from ‘static void libmaus2::huffman::RLEncoderTemplate<_huffmanencoderfile_type>::concatenate(const std::vector<std::__cxx11::basic_string<char> >&, const std::string&, bool) [with _huffmanencoderfile_type = libmaus2::huffman::HuffmanEncoderFileTemplate<libmaus2::aio::SynchronousGenericOutput<unsigned char>, libmaus2::bitio::FastWriteBitWriterTemplate<unsigned char, libmaus2::aio::PutOutputIterator<unsigned char, libmaus2::aio::SynchronousGenericOutput<unsigned char> >, 128, 255, false> >]’ at ./libmaus2/huffman/RLEncoder.hpp:367:20:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::huffman::IndexEntry*, std::vector<libmaus2::huffman::IndexEntry> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator<libmaus2::huffman::IndexEntry>]’,
inlined from ‘uint64_t libmaus2::gamma::GammaGapEncoder::encodeInternal(iterator, uint64_t, uint64_t) [with iterator = libmaus2::suffixsort::GapArrayByteDecoderBuffer::iterator]’ at ./libmaus2/gamma/GammaGapEncoder.hpp:112:21,
inlined from ‘void libmaus2::gamma::GammaGapEncoder::encode(iterator, uint64_t) [with iterator = libmaus2::suffixsort::GapArrayByteDecoderBuffer::iterator]’ at ./libmaus2/gamma/GammaGapEncoder.hpp:185:63,
inlined from ‘void libmaus2::suffixsort::GapArrayByte::saveGammaGapArray(const std::string&)’ at ./libmaus2/suffixsort/GapArrayByte.hpp:292:14:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<libmaus2::huffman::IndexEntry*, std::vector<libmaus2::huffman::IndexEntry> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/map:60,
from ./libmaus2/serialize/Serialize.hpp:25,
from ./libmaus2/autoarray/AutoArray.hpp:51:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>, std::_Select1st<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >]’,
inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillNodeMap(std::map<long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp:55:14:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>, std::_Select1st<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >]’,
inlined from ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyBaseBlock::fillNodeMap(std::map<long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>&)’ at ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:198:14:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*>, std::_Select1st<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, libmaus2::suffixsort::bwtb3m::MergeStrategyBlock*> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long unsigned int>}; _Tp = std::pair<std::__cxx11::basic_string<char>, long long unsigned int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long unsigned int>}; _Tp = std::pair<std::__cxx11::basic_string<char>, long long unsigned int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<std::__cxx11::basic_string<char>, long long unsigned int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘_ZN8libmaus27wavelet49ImpExternalWaveletGeneratorCompactHuffmanParallel17createFinalStreamISoEEyRT_y._omp_fn.0’ at ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp:253:24:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘static std::vector<long long unsigned int> libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder::getSplitKeysInternal(const libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder&, const libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder&, uint64_t, uint64_t)’ at ./libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp:345:21:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::OutputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:93:27:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:79:17:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:80:71:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:80:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::OutputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:81:18:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::OutputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >]’,
inlined from ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:82:27:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::OutputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::InputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >]’,
inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:121:17:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr<libmaus2::aio::InputStreamInstance>; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >]’,
inlined from ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’ at ./libmaus2/util/FileTempFileContainer.hpp:123:26:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> >, std::_Select1st<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::shared_ptr<libmaus2::aio::InputStreamInstance> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
during IPA pass: inline
In file included from ./libmaus2/network/CurlObjectThreadCallable.hpp:22,
from ./libmaus2/network/CurlObjectReader.hpp:21,
from ./libmaus2/network/CurlInputStreamBuffer.hpp:21,
from ./libmaus2/network/UrlInputStreamBufferWrapper.hpp:22,
from ./libmaus2/network/UrlInputStream.hpp:22,
from ./libmaus2/network/UrlInputStreamFactory.hpp:23,
from ./libmaus2/aio/InputStreamFactoryContainer.hpp:25,
from ./libmaus2/huffman/IndexLoaderBase.hpp:24,
from ./libmaus2/huffman/IndexLoader.hpp:23,
from ./libmaus2/huffman/RLEncoder.hpp:26:
In destructor ‘virtual libmaus2::parallel::StdThread::~StdThread()’,
inlined from ‘void std::default_delete<_Tp>::operator()(_Tp*) const [with _Tp = libmaus2::parallel::StdThread]’ at /usr/include/c++/12/bits/unique_ptr.h:95:2,
inlined from ‘void std::__uniq_ptr_impl<_Tp, _Dp>::reset(pointer) [with _Tp = libmaus2::parallel::StdThread; _Dp = std::default_delete<libmaus2::parallel::StdThread>]’ at /usr/include/c++/12/bits/unique_ptr.h:203:16,
inlined from ‘std::__uniq_ptr_impl<_Tp, _Dp>& std::__uniq_ptr_impl<_Tp, _Dp>::operator=(std::__uniq_ptr_impl<_Tp, _Dp>&&) [with _Tp = libmaus2::parallel::StdThread; _Dp = std::default_delete<libmaus2::parallel::StdThread>]’ at /usr/include/c++/12/bits/unique_ptr.h:183:7,
inlined from ‘std::__uniq_ptr_data<_Tp, _Dp, <anonymous>, <anonymous> >& std::__uniq_ptr_data<_Tp, _Dp, <anonymous>, <anonymous> >::operator=(std::__uniq_ptr_data<_Tp, _Dp, <anonymous>, <anonymous> >&&) [with _Tp = libmaus2::parallel::StdThread; _Dp = std::default_delete<libmaus2::parallel::StdThread>; bool <anonymous> = true; bool <anonymous> = true]’ at /usr/include/c++/12/bits/unique_ptr.h:235:24,
inlined from ‘std::unique_ptr<_Tp, _Dp>& std::unique_ptr<_Tp, _Dp>::operator=(std::unique_ptr<_Tp, _Dp>&&) [with _Tp = libmaus2::parallel::StdThread; _Dp = std::default_delete<libmaus2::parallel::StdThread>]’ at /usr/include/c++/12/bits/unique_ptr.h:406:19,
inlined from ‘static void libmaus2::autoarray::ArrayErase<std::unique_ptr<_Tp> >::erase(std::unique_ptr<_Tp>*, uint64_t) [with N = libmaus2::parallel::StdThread]’ at ./libmaus2/autoarray/AutoArray.hpp:1159:14,
inlined from ‘libmaus2::autoarray::AutoArray<N, atype, erase_type>::AutoArray(uint64_t, bool) [with N = std::unique_ptr<libmaus2::parallel::StdThread>; libmaus2::autoarray::alloc_type atype = libmaus2::autoarray::alloc_type_cxx; erase_type = libmaus2::autoarray::ArrayErase<std::unique_ptr<libmaus2::parallel::StdThread> >]’ at ./libmaus2/autoarray/AutoArray.hpp:921:23,
inlined from ‘libmaus2::suffixsort::bwtb3m::BaseBlockSorting::BaseBlockSorting(libmaus2::suffixsort::bwtb3m::MergeTree&, uint64_t, uint64_t, std::deque<long long unsigned int>&, std::ostream*, uint64_t)’ at ./libmaus2/suffixsort/bwtb3m/BaseBlockSorting.hpp:64:153:
./libmaus2/parallel/StdThread.hpp:144:47: internal compiler error: Bus error
144 | virtual ~StdThread() {}
| ^
0x137a0d7 internal_error(char const*, ...)
???:0
0x63087f is_gimple_reg(tree_node*)
???:0
0x720b93 ipa_param_adjustments::modify_call(cgraph_edge*, bool)
???:0
0x4e63e7 cgraph_edge::redirect_call_stmt_to_callee(cgraph_edge*)
???:0
0x9724cb redirect_all_calls(copy_body_data*, basic_block_def*)
???:0
0x97d6f3 optimize_inline_calls(tree_node*)
???:0
0x6e4a9f inline_transform(cgraph_node*)
???:0
0x83273f execute_all_ipa_transforms(bool)
???:0
0x4ebcb3 cgraph_node::expand()
???:0
0x4efa33 symbol_table::finalize_compilation_unit()
???:0
Please submit a full bug report, with preprocessed source (by using -freport-bug).
Please include the complete backtrace with any bug report.
See <file:///usr/share/doc/gcc-12/README.Bugs> for instructions.
g++: internal compiler error: Bus error signal terminated program cc1plus
Please submit a full bug report, with preprocessed source (by using -freport-bug).
See <file:///usr/share/doc/gcc-12/README.Bugs> for instructions.
make[3]: *** [Makefile:9842: libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.lo] Error 1
make[3]: *** Waiting for unfinished jobs....
The bug is not reproducible, so it is likely a hardware or OS problem.
make[3]: *** [Makefile:9821: libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.lo] Error 1
The bug is not reproducible, so it is likely a hardware or OS problem.
make[3]: *** [Makefile:9828: libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.lo] Error 1
The bug is not reproducible, so it is likely a hardware or OS problem.
make[3]: *** [Makefile:9835: libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.lo] Error 1
make[3]: Leaving directory '/<<BUILDDIR>>/libmaus2-2.0.813+ds/src'
make[2]: *** [Makefile:682: all-recursive] Error 1
make[2]: Leaving directory '/<<BUILDDIR>>/libmaus2-2.0.813+ds'
make[1]: *** [Makefile:566: all] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/libmaus2-2.0.813+ds'
dh_auto_build: error: make -j4 returned exit code 2
make: *** [debian/rules:16: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2023-01-23T13:36:17Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 14352
Distribution: bookworm-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 344
Job: libmaus2_2.0.813+ds-1
Machine Architecture: armhf
Package: libmaus2
Package-Time: 14756
Source-Version: 2.0.813+ds-1
Space: 0
Status: failed
Version: 2.0.813+ds-1
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Finished at 2023-01-23T13:36:19Z
Build needed 00:00:00, 0k disc space