libhmsbeagle →
2.1-2 →
armhf → 2014-01-19 06:02:24
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testwandboard
╔══════════════════════════════════════════════════════════════════════════════╗
║ libhmsbeagle 2.1-2 (armhf) 19 Jan 2014 05:34 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: libhmsbeagle
Version: 2.1-2
Source Version: 2.1-2
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/libhmsbeagle-VtU2S4/libhmsbeagle-2.1' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/libhmsbeagle-VtU2S4' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-3d5c25c1-79ff-4ab3-b0ba-5b01c625ac7a' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7193 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8315 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 15.5 MB in 46s (330 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'libhmsbeagle' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/libhmsbeagle/trunk/
Need to get 303 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main libhmsbeagle 2.1-2 (dsc) [1614 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main libhmsbeagle 2.1-2 (tar) [260 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main libhmsbeagle 2.1-2 (diff) [41.1 kB]
Fetched 303 kB in 0s (583 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-BH1QE6/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/758 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12180 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, dh-autoreconf, doxygen, graphviz, javahelper, default-jdk (>= 1:1.6), ant, dh-linktree, libjs-jquery
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, dh-autoreconf, doxygen, graphviz, javahelper, default-jdk (>= 1:1.6), ant, dh-linktree, libjs-jquery
dpkg-deb: building package `sbuild-build-depends-libhmsbeagle-dummy' in `/«BUILDDIR»/resolver-HL6EK8/apt_archive/sbuild-build-depends-libhmsbeagle-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install libhmsbeagle build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
ant autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
ca-certificates-java dctrl-tools debhelper default-jdk default-jre
default-jre-headless devscripts dh-autoreconf dh-linktree dh-python doxygen
file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base
graphviz groff-base intltool-debian java-common javahelper
libarchive-zip-perl libasound2 libasound2-data libasprintf0c2 libasyncns0
libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data
libavahi-client3 libavahi-common-data libavahi-common3 libcairo2 libcdt4
libcgraph5 libcroco3 libcups2 libdatrie1 libdrm2 libexpat1 libffi6 libflac8
libfontconfig1 libfreetype6 libgcrypt11 libgd3 libgdk-pixbuf2.0-0
libgdk-pixbuf2.0-common libgif4 libgl1-mesa-glx libglapi-mesa libglib2.0-0
libgnutls26 libgpg-error0 libgraph4 libgraphite2-3 libgssapi-krb5-2
libgtk2.0-0 libgtk2.0-common libgvc5 libgvpr1 libharfbuzz0b libice6
libjasper1 libjbig0 libjpeg8 libjs-jquery libjson-c2 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libltdl7 libmagic1
libnspr4 libnss3 libogg0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpathplan4 libpcsclite1 libpipeline1 libpixman-1-0
libpng12-0 libpulse0 libpython3-stdlib libpython3.3-minimal
libpython3.3-stdlib libsigsegv2 libsm6 libsndfile1 libsqlite3-0 libssl1.0.0
libtasn1-3 libthai-data libthai0 libtiff4 libtool libunistring0 libvorbis0a
libvorbisenc2 libvpx1 libwrap0 libx11-6 libx11-data libx11-xcb1 libxau6
libxaw7 libxcb-dri2-0 libxcb-glx0 libxcb-render0 libxcb-shm0 libxcb1
libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxerces2-java
libxext6 libxfixes3 libxi6 libxinerama1 libxml-commons-external-java
libxml-commons-resolver1.1-java libxml2 libxmu6 libxpm4 libxrandr2
libxrender1 libxt6 libxtst6 libxxf86vm1 m4 man-db mime-support openjdk-7-jdk
openjdk-7-jre openjdk-7-jre-headless openssl po-debconf python3
python3-minimal python3.3 python3.3-minimal shared-mime-info tzdata-java ucf
x11-common
Suggested packages:
ant-doc ant-gcj autoconf2.13 autoconf-archive gnu-standards autoconf-doc
wamerican wordlist whois vacation debtags dh-make bsd-mailx mailx
cvs-buildpackage devscripts-el gnuplot libauthen-sasl-perl
libfile-desktopentry-perl libnet-smtp-ssl-perl libterm-size-perl
libyaml-syck-perl mutt ssh-client svn-buildpackage w3m doxygen-latex
doxygen-doc doxygen-gui gettext-doc gsfonts graphviz-doc groff cvs gawk
tofrodos libasound2-plugins alsa-utils cups-common rng-tools libgd-tools
krb5-doc krb5-user librsvg2-common gvfs libjasper-runtime liblcms2-utils
ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp pcscd pulseaudio libtool-doc automaken gfortran
fortran95-compiler gcj-jdk libxerces2-java-doc libxerces2-java-gcj
libxml-commons-resolver1.1-java-doc less www-browser openjdk-7-demo
openjdk-7-source visualvm icedtea-7-plugin libnss-mdns sun-java6-fonts
fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei ttf-wqy-zenhei
ttf-indic-fonts libmail-box-perl python3-doc python3-tk python3.3-doc
binfmt-support
Recommended packages:
ant-optional at dput dupload libdistro-info-perl libencode-locale-perl
libjson-perl libparse-debcontrol-perl liburi-perl libwww-perl lintian
patchutils python3-debian python3-magic strace unzip wdiff wget curl
debian-keyring equivs liblwp-protocol-https-perl libsoap-lite-perl
libasprintf-dev libgettextpo-dev ttf-liberation libgl1-mesa-dri
libglib2.0-data hicolor-icon-theme libgtk2.0-bin javascript-common
krb5-locales libltdl-dev tcpd xml-core libxt-dev libgnome2-0 libgnomevfs2-0
libgconf2-4 fonts-dejavu-extra icedtea-7-jre-jamvm libmail-sendmail-perl
The following NEW packages will be installed:
ant autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
ca-certificates-java dctrl-tools debhelper default-jdk default-jre
default-jre-headless devscripts dh-autoreconf dh-linktree dh-python doxygen
file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base
graphviz groff-base intltool-debian java-common javahelper
libarchive-zip-perl libasound2 libasound2-data libasprintf0c2 libasyncns0
libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data
libavahi-client3 libavahi-common-data libavahi-common3 libcairo2 libcdt4
libcgraph5 libcroco3 libcups2 libdatrie1 libdrm2 libexpat1 libffi6 libflac8
libfontconfig1 libfreetype6 libgcrypt11 libgd3 libgdk-pixbuf2.0-0
libgdk-pixbuf2.0-common libgif4 libgl1-mesa-glx libglapi-mesa libglib2.0-0
libgnutls26 libgpg-error0 libgraph4 libgraphite2-3 libgssapi-krb5-2
libgtk2.0-0 libgtk2.0-common libgvc5 libgvpr1 libharfbuzz0b libice6
libjasper1 libjbig0 libjpeg8 libjs-jquery libjson-c2 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libltdl7 libmagic1
libnspr4 libnss3 libogg0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpathplan4 libpcsclite1 libpipeline1 libpixman-1-0
libpng12-0 libpulse0 libpython3-stdlib libpython3.3-minimal
libpython3.3-stdlib libsigsegv2 libsm6 libsndfile1 libsqlite3-0 libssl1.0.0
libtasn1-3 libthai-data libthai0 libtiff4 libtool libunistring0 libvorbis0a
libvorbisenc2 libvpx1 libwrap0 libx11-6 libx11-data libx11-xcb1 libxau6
libxaw7 libxcb-dri2-0 libxcb-glx0 libxcb-render0 libxcb-shm0 libxcb1
libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxerces2-java
libxext6 libxfixes3 libxi6 libxinerama1 libxml-commons-external-java
libxml-commons-resolver1.1-java libxml2 libxmu6 libxpm4 libxrandr2
libxrender1 libxt6 libxtst6 libxxf86vm1 m4 man-db mime-support openjdk-7-jdk
openjdk-7-jre openjdk-7-jre-headless openssl po-debconf python3
python3-minimal python3.3 python3.3-minimal
sbuild-build-depends-libhmsbeagle-dummy shared-mime-info tzdata-java ucf
x11-common
0 upgraded, 162 newly installed, 0 to remove and 0 not upgraded.
Need to get 101 MB/101 MB of archives.
After this operation, 202 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.6-1 [24.4 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main libssl1.0.0 armhf 1.0.1f-1 [809 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-4 [958 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-3 [943 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.1-2 [29.5 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libgpg-error0 armhf 1.12-0.2 [78.9 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libgcrypt11 armhf 1.5.3-3 [231 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libp11-kit0 armhf 0.20.1-3 [154 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libtasn1-3 armhf 2.14-3 [64.1 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libgnutls26 armhf 2.12.23-8 [596 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libkeyutils1 armhf 1.5.6-1 [7900 B]
Get:14 http://172.17.0.1/private/ jessie-staging/main libkrb5support0 armhf 1.11.3+dfsg-3+nmu1 [55.0 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main libk5crypto3 armhf 1.11.3+dfsg-3+nmu1 [130 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main libkrb5-3 armhf 1.11.3+dfsg-3+nmu1 [338 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libgssapi-krb5-2 armhf 1.11.3+dfsg-3+nmu1 [145 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libsqlite3-0 armhf 3.8.2-1 [423 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libwrap0 armhf 7.6.q-25 [55.5 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libasound2-data all 1.0.27.2-3 [58.7 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libasound2 armhf 1.0.27.2-3 [407 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libasyncns0 armhf 0.8-4 [12.8 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.4-1 [1907 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libatk1.0-data all 2.10.0-2 [171 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main libatk1.0-0 armhf 2.10.0-2 [79.0 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-4 [117 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.49-5 [179 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.5.2-1 [397 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0027+nmu1 [70.6 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.34-1 [1047 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main fontconfig-config all 2.11.0-2 [270 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libfontconfig1 armhf 2.11.0-2 [329 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libdrm2 armhf 2.4.50-1 [474 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libglapi-mesa armhf 9.2.2-1 [63.2 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main libxcb1 armhf 1.10-2 [36.9 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libx11-data all 2:1.6.2-1 [125 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libx11-6 armhf 2:1.6.2-1 [867 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main libx11-xcb1 armhf 2:1.6.2-1 [163 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libxcb-dri2-0 armhf 1.10-2 [11.8 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libxcb-glx0 armhf 1.10-2 [23.2 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libxfixes3 armhf 1:5.0.1-1 [21.0 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libxdamage1 armhf 1:1.1.4-1 [14.6 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libxext6 armhf 2:1.3.2-1 [51.1 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libxxf86vm1 armhf 1:1.1.3-1 [20.0 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main libgl1-mesa-glx armhf 9.2.2-1 [128 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main libpixman-1-0 armhf 0.32.4-1 [476 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main libxcb-render0 armhf 1.10-2 [15.7 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libxcb-shm0 armhf 1.10-2 [10.8 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main libcairo2 armhf 1.12.16-2+rpi1 [894 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main libjpeg8 armhf 8d-2 [133 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main libjasper1 armhf 1.900.1-14 [141 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main libjbig0 armhf 2.0-2 [31.5 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main libtiff4 armhf 3.9.7-3 [190 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main libgdk-pixbuf2.0-common all 2.28.2-1 [291 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main libgdk-pixbuf2.0-0 armhf 2.28.2-1 [141 kB]
Get:61 http://172.17.0.1/private/ jessie-staging/main libgtk2.0-common all 2.24.22-1 [3140 kB]
Get:62 http://172.17.0.1/private/ jessie-staging/main libavahi-common-data armhf 0.6.31-4 [98.4 kB]
Get:63 http://172.17.0.1/private/ jessie-staging/main libavahi-common3 armhf 0.6.31-4 [48.2 kB]
Get:64 http://172.17.0.1/private/ jessie-staging/main libavahi-client3 armhf 0.6.31-4 [49.8 kB]
Get:65 http://172.17.0.1/private/ jessie-staging/main libcups2 armhf 1.6.4-2+rpi1 [263 kB]
Get:66 http://172.17.0.1/private/ jessie-staging/main libthai-data all 0.1.20-1 [157 kB]
Get:67 http://172.17.0.1/private/ jessie-staging/main libdatrie1 armhf 0.2.8-1 [29.1 kB]
Get:68 http://172.17.0.1/private/ jessie-staging/main libthai0 armhf 0.1.20-1 [41.4 kB]
Get:69 http://172.17.0.1/private/ jessie-staging/main fontconfig armhf 2.11.0-2 [407 kB]
Get:70 http://172.17.0.1/private/ jessie-staging/main libpango-1.0-0 armhf 1.36.0-1+b1 [257 kB]
Get:71 http://172.17.0.1/private/ jessie-staging/main libgraphite2-3 armhf 1.2.4-1 [57.9 kB]
Get:72 http://172.17.0.1/private/ jessie-staging/main libharfbuzz0b armhf 0.9.25-1 [452 kB]
Get:73 http://172.17.0.1/private/ jessie-staging/main libpangoft2-1.0-0 armhf 1.36.0-1+b1 [192 kB]
Get:74 http://172.17.0.1/private/ jessie-staging/main libpangocairo-1.0-0 armhf 1.36.0-1+b1 [181 kB]
Get:75 http://172.17.0.1/private/ jessie-staging/main libxcomposite1 armhf 1:0.4.4-1 [16.8 kB]
Get:76 http://172.17.0.1/private/ jessie-staging/main libxcursor1 armhf 1:1.1.14-1 [34.7 kB]
Get:77 http://172.17.0.1/private/ jessie-staging/main libxi6 armhf 2:1.7.2-1 [76.8 kB]
Get:78 http://172.17.0.1/private/ jessie-staging/main libxinerama1 armhf 2:1.1.3-1 [16.9 kB]
Get:79 http://172.17.0.1/private/ jessie-staging/main libxrandr2 armhf 2:1.4.1-1 [33.8 kB]
Get:80 http://172.17.0.1/private/ jessie-staging/main shared-mime-info armhf 1.0-1 [1065 kB]
Get:81 http://172.17.0.1/private/ jessie-staging/main libgtk2.0-0 armhf 2.24.22-1 [1943 kB]
Get:82 http://172.17.0.1/private/ jessie-staging/main openssl armhf 1.0.1f-1 [653 kB]
Get:83 http://172.17.0.1/private/ jessie-staging/main ca-certificates all 20130906 [185 kB]
Get:84 http://172.17.0.1/private/ jessie-staging/main libnspr4 armhf 2:4.10.2-1 [115 kB]
Get:85 http://172.17.0.1/private/ jessie-staging/main libnss3 armhf 2:3.15.3.1-1 [873 kB]
Get:86 http://172.17.0.1/private/ jessie-staging/main ca-certificates-java all 20130815 [14.7 kB]
Get:87 http://172.17.0.1/private/ jessie-staging/main tzdata-java all 2013i-1 [81.2 kB]
Get:88 http://172.17.0.1/private/ jessie-staging/main java-common all 0.49 [135 kB]
Get:89 http://172.17.0.1/private/ jessie-staging/main liblcms2-2 armhf 2.2+git20110628-2.3 [124 kB]
Get:90 http://172.17.0.1/private/ jessie-staging/main libpcsclite1 armhf 1.8.10-1 [55.4 kB]
Get:91 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jre-headless armhf 7u45-2.4.3-4 [38.9 MB]
Get:92 http://172.17.0.1/private/ jessie-staging/main default-jre-headless armhf 1:1.7-49 [8648 B]
Get:93 http://172.17.0.1/private/ jessie-staging/main libgif4 armhf 4.1.6-11 [40.4 kB]
Get:94 http://172.17.0.1/private/ jessie-staging/main x11-common all 1:7.7+5 [282 kB]
Get:95 http://172.17.0.1/private/ jessie-staging/main libice6 armhf 2:1.0.8-2 [56.2 kB]
Get:96 http://172.17.0.1/private/ jessie-staging/main libjson-c2 armhf 0.11-3 [25.4 kB]
Get:97 http://172.17.0.1/private/ jessie-staging/main libsm6 armhf 2:1.2.1-2 [32.5 kB]
Get:98 http://172.17.0.1/private/ jessie-staging/main libogg0 armhf 1.3.1-1 [18.2 kB]
Get:99 http://172.17.0.1/private/ jessie-staging/main libflac8 armhf 1.3.0-2 [95.0 kB]
Get:100 http://172.17.0.1/private/ jessie-staging/main libvorbis0a armhf 1.3.2-1.3 [102 kB]
Get:101 http://172.17.0.1/private/ jessie-staging/main libvorbisenc2 armhf 1.3.2-1.3 [120 kB]
Get:102 http://172.17.0.1/private/ jessie-staging/main libsndfile1 armhf 1.0.25-7 [249 kB]
Get:103 http://172.17.0.1/private/ jessie-staging/main libxtst6 armhf 2:1.2.2-1 [26.8 kB]
Get:104 http://172.17.0.1/private/ jessie-staging/main libpulse0 armhf 4.0-6+b2 [208 kB]
Get:105 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jre armhf 7u45-2.4.3-4 [206 kB]
Get:106 http://172.17.0.1/private/ jessie-staging/main default-jre armhf 1:1.7-49 [848 B]
Get:107 http://172.17.0.1/private/ jessie-staging/main libatk-wrapper-java all 0.30.4-4 [30.1 kB]
Get:108 http://172.17.0.1/private/ jessie-staging/main libatk-wrapper-java-jni armhf 0.30.4-4 [26.1 kB]
Get:109 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:110 http://172.17.0.1/private/ jessie-staging/main libvpx1 armhf 1.3.0-2+rpi1 [363 kB]
Get:111 http://172.17.0.1/private/ jessie-staging/main libxpm4 armhf 1:3.5.10-1 [44.9 kB]
Get:112 http://172.17.0.1/private/ jessie-staging/main libgd3 armhf 2.1.0-3 [156 kB]
Get:113 http://172.17.0.1/private/ jessie-staging/main libltdl7 armhf 2.4.2-1.6 [349 kB]
Get:114 http://172.17.0.1/private/ jessie-staging/main libpython3.3-minimal armhf 3.3.3-5 [417 kB]
Get:115 http://172.17.0.1/private/ jessie-staging/main mime-support all 3.54 [36.4 kB]
Get:116 http://172.17.0.1/private/ jessie-staging/main libpython3.3-stdlib armhf 3.3.3-5 [2007 kB]
Get:117 http://172.17.0.1/private/ jessie-staging/main libsigsegv2 armhf 2.10-2 [29.2 kB]
Get:118 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:119 http://172.17.0.1/private/ jessie-staging/main libxt6 armhf 1:1.1.4-1 [183 kB]
Get:120 http://172.17.0.1/private/ jessie-staging/main libxmu6 armhf 2:1.1.1-1 [59.1 kB]
Get:121 http://172.17.0.1/private/ jessie-staging/main libxaw7 armhf 2:1.0.11-1 [195 kB]
Get:122 http://172.17.0.1/private/ jessie-staging/main python3.3-minimal armhf 3.3.3-5 [1164 kB]
Get:123 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:124 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.1-2 [135 kB]
Get:125 http://172.17.0.1/private/ jessie-staging/main m4 armhf 1.4.16-5 [245 kB]
Get:126 http://172.17.0.1/private/ jessie-staging/main libxml-commons-resolver1.1-java all 1.2-7 [91.9 kB]
Get:127 http://172.17.0.1/private/ jessie-staging/main libxml-commons-external-java all 1.4.01-2 [245 kB]
Get:128 http://172.17.0.1/private/ jessie-staging/main libxerces2-java all 2.11.0-7 [1365 kB]
Get:129 http://172.17.0.1/private/ jessie-staging/main ant all 1.9.3-1 [1877 kB]
Get:130 http://172.17.0.1/private/ jessie-staging/main autoconf all 2.69-2 [339 kB]
Get:131 http://172.17.0.1/private/ jessie-staging/main autotools-dev all 20130810.1 [69.6 kB]
Get:132 http://172.17.0.1/private/ jessie-staging/main automake all 1:1.14.1-2 [724 kB]
Get:133 http://172.17.0.1/private/ jessie-staging/main autopoint all 0.18.3.1-2 [392 kB]
Get:134 http://172.17.0.1/private/ jessie-staging/main dctrl-tools armhf 2.23 [159 kB]
Get:135 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.1-2 [1829 kB]
Get:136 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:137 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:138 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20131227 [687 kB]
Get:139 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jdk armhf 7u45-2.4.3-4 [14.1 MB]
Get:140 http://172.17.0.1/private/ jessie-staging/main default-jdk armhf 1:1.7-49 [848 B]
Get:141 http://172.17.0.1/private/ jessie-staging/main python3.3 armhf 3.3.3-5 [159 kB]
Get:142 http://172.17.0.1/private/ jessie-staging/main python3-minimal armhf 3.3.2-17 [38.6 kB]
Get:143 http://172.17.0.1/private/ jessie-staging/main libpython3-stdlib armhf 3.3.2-17 [18.8 kB]
Get:144 http://172.17.0.1/private/ jessie-staging/main dh-python all 1.20131021-1 [51.3 kB]
Get:145 http://172.17.0.1/private/ jessie-staging/main python3 armhf 3.3.2-17 [22.1 kB]
Get:146 http://172.17.0.1/private/ jessie-staging/main devscripts armhf 2.13.9 [921 kB]
Get:147 http://172.17.0.1/private/ jessie-staging/main libtool armhf 2.4.2-1.6 [505 kB]
Get:148 http://172.17.0.1/private/ jessie-staging/main dh-autoreconf all 9 [15.5 kB]
Get:149 http://172.17.0.1/private/ jessie-staging/main dh-linktree all 0.4 [10.3 kB]
Get:150 http://172.17.0.1/private/ jessie-staging/main doxygen armhf 1.8.6-1 [2147 kB]
Get:151 http://172.17.0.1/private/ jessie-staging/main libcdt4 armhf 2.26.3-16 [57.9 kB]
Get:152 http://172.17.0.1/private/ jessie-staging/main libcgraph5 armhf 2.26.3-16 [80.2 kB]
Get:153 http://172.17.0.1/private/ jessie-staging/main libgraph4 armhf 2.26.3-16 [69.7 kB]
Get:154 http://172.17.0.1/private/ jessie-staging/main libpathplan4 armhf 2.26.3-16 [62.6 kB]
Get:155 http://172.17.0.1/private/ jessie-staging/main libxdot4 armhf 2.26.3-16 [53.5 kB]
Get:156 http://172.17.0.1/private/ jessie-staging/main libgvc5 armhf 2.26.3-16 [476 kB]
Get:157 http://172.17.0.1/private/ jessie-staging/main libgvpr1 armhf 2.26.3-16 [234 kB]
Get:158 http://172.17.0.1/private/ jessie-staging/main graphviz armhf 2.26.3-16 [348 kB]
Get:159 http://172.17.0.1/private/ jessie-staging/main libarchive-zip-perl all 1.30-7 [96.5 kB]
Get:160 http://172.17.0.1/private/ jessie-staging/main javahelper all 0.45 [83.2 kB]
Get:161 http://172.17.0.1/private/ jessie-staging/main libjs-jquery all 1.7.2+dfsg-3 [96.9 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.2.6-1) ...
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
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No schema files found: doing nothing.
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Setting up libcups2:armhf (1.6.4-2+rpi1) ...
Setting up libthai-data (0.1.20-1) ...
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Setting up fontconfig (2.11.0-2) ...
Regenerating fonts cache... done.
Setting up libpango-1.0-0:armhf (1.36.0-1+b1) ...
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Setting up x11-common (1:7.7+5) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:armhf (2:1.0.8-2) ...
Setting up libjson-c2:armhf (0.11-3) ...
Setting up libsm6:armhf (2:1.2.1-2) ...
Setting up libogg0:armhf (1.3.1-1) ...
Setting up libflac8:armhf (1.3.0-2) ...
Setting up libvorbis0a:armhf (1.3.2-1.3) ...
Setting up libvorbisenc2:armhf (1.3.2-1.3) ...
Setting up libsndfile1:armhf (1.0.25-7) ...
Setting up libxtst6:armhf (2:1.2.2-1) ...
Setting up libpulse0:armhf (4.0-6+b2) ...
Setting up libcroco3:armhf (0.6.8-2) ...
Setting up libvpx1:armhf (1.3.0-2+rpi1) ...
Setting up libxpm4:armhf (1:3.5.10-1) ...
Setting up libgd3:armhf (2.1.0-3) ...
Setting up libltdl7:armhf (2.4.2-1.6) ...
Setting up libpython3.3-minimal:armhf (3.3.3-5) ...
Setting up mime-support (3.54) ...
update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
Setting up libpython3.3-stdlib:armhf (3.3.3-5) ...
Setting up libsigsegv2:armhf (2.10-2) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up libxt6:armhf (1:1.1.4-1) ...
Setting up libxmu6:armhf (2:1.1.1-1) ...
Setting up libxaw7:armhf (2:1.0.11-1) ...
Setting up python3.3-minimal (3.3.3-5) ...
Setting up file (1:5.14-2) ...
Setting up gettext-base (0.18.3.1-2) ...
Setting up m4 (1.4.16-5) ...
Setting up libxml-commons-resolver1.1-java (1.2-7) ...
Setting up libxml-commons-external-java (1.4.01-2) ...
Setting up libxerces2-java (2.11.0-7) ...
Setting up autoconf (2.69-2) ...
Setting up autotools-dev (20130810.1) ...
Setting up automake (1:1.14.1-2) ...
update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.18.3.1-2) ...
Setting up dctrl-tools (2.23) ...
Setting up gettext (0.18.3.1-2) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20131227) ...
Setting up python3.3 (3.3.3-5) ...
Setting up python3-minimal (3.3.2-17) ...
Setting up libpython3-stdlib:armhf (3.3.2-17) ...
Setting up libtool (2.4.2-1.6) ...
Setting up dh-autoreconf (9) ...
Setting up dh-linktree (0.4) ...
Setting up doxygen (1.8.6-1) ...
Setting up libcdt4 (2.26.3-16) ...
Setting up libcgraph5 (2.26.3-16) ...
Setting up libgraph4 (2.26.3-16) ...
Setting up libpathplan4 (2.26.3-16) ...
Setting up libxdot4 (2.26.3-16) ...
Setting up libgvc5 (2.26.3-16) ...
Setting up libgvpr1 (2.26.3-16) ...
Setting up graphviz (2.26.3-16) ...
Setting up libarchive-zip-perl (1.30-7) ...
Setting up libjs-jquery (1.7.2+dfsg-3) ...
Setting up dh-python (1.20131021-1) ...
Setting up python3 (3.3.2-17) ...
Setting up devscripts (2.13.9) ...
Setting up javahelper (0.45) ...
Setting up openjdk-7-jre-headless:armhf (7u45-2.4.3-4) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up default-jre-headless (1:1.7-49) ...
Setting up openjdk-7-jre:armhf (7u45-2.4.3-4) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode
Setting up default-jre (1:1.7-49) ...
Setting up ant (1.9.3-1) ...
Setting up openjdk-7-jdk:armhf (7u45-2.4.3-4) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javah to provide /usr/bin/javah (javah) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode
Setting up default-jdk (1:1.7-49) ...
Setting up sbuild-build-depends-libhmsbeagle-dummy (0.invalid.0) ...
Setting up ca-certificates-java (20130815) ...
done.
Setting up libatk-wrapper-java (0.30.4-4) ...
Setting up libatk-wrapper-java-jni:armhf (0.30.4-4) ...
Processing triggers for libc-bin (2.17-97) ...
Processing triggers for ca-certificates (20130906) ...
Updating certificates in /etc/ssl/certs... 164 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....
Adding debian:cacert.org_class3.pem
Adding debian:cacert.org_root.pem
Adding debian:A-Trust-nQual-03.pem
Adding debian:ACEDICOM_Root.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/AC_Ra?z_Certic?mara_S.A..pem. Message:
/etc/ssl/certs/AC_Ra?z_Certic?mara_S.A..pem (No such file or directory)
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:America_Online_Root_Certification_Authority_1.pem
Adding debian:America_Online_Root_Certification_Authority_2.pem
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_CA_1.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig.pem
Adding debian:CA_Disig_Root_R1.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:Certigna.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/Certinomis_-_Autorit?_Racine.pem. Message:
/etc/ssl/certs/Certinomis_-_Autorit?_Racine.pem (No such file or directory)
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:Certum_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem
Adding debian:ComSign_CA.pem
Adding debian:ComSign_Secured_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem
Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/EBG_Elektronik_Sertifika_Hizmet_Sa?lay?c?s?.pem. Message:
/etc/ssl/certs/EBG_Elektronik_Sertifika_Hizmet_Sa?lay?c?s?.pem (No such file or directory)
Adding debian:EC-ACC.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust.net_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Adding debian:Firmaprofesional_Root_CA.pem
Adding debian:GTE_CyberTrust_Global_Root.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:IGC_A.pem
Adding debian:Izenpe.com.pem
Adding debian:Juur-SK.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem. Message:
/etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem (No such file or directory)
Adding debian:NetLock_Business_=Class_B=_Root.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:PSCProcert.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:RSA_Root_Certificate_1.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:StartCom_Certification_Authority_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:Swisscom_Root_CA_2.pem
Adding debian:Swisscom_Root_EV_CA_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TC_TrustCenter_Class_2_CA_II.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:TC_TrustCenter_Universal_CA_I.pem
Adding debian:TDC_Internet_Root_CA.pem
Adding debian:TDC_OCES_Root_CA.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:Thawte_Premium_Server_CA.pem
Adding debian:Thawte_Server_CA.pem
Adding debian:Trustis_FPS_Root_CA.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/T?B?TAK_UEKAE_K?k_Sertifika_Hizmet_Sa?lay?c?s?_-_S?r?m_3.pem. Message:
/etc/ssl/certs/T?B?TAK_UEKAE_K?k_Sertifika_Hizmet_Sa?lay?c?s?_-_S?r?m_3.pem (No such file or directory)
Adding debian:UTN_DATACorp_SGC_Root_CA.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:ValiCert_Class_1_VA.pem
Adding debian:ValiCert_Class_2_VA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:Wells_Fargo_Root_CA.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:spi-cacert-2008.pem
done.
done.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.11.0-armv7-x13 armhf (armv7l)
Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.5+rpi1 g++-4.6_4.6.4-5+rpi1 g++-4.8_4.8.2-12 gcc-4.6_4.6.4-5+rpi1 gcc-4.8_4.8.2-12 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-12 libstdc++6_4.8.2-12 libstdc++6-4.6-dev_4.6.4-5+rpi1 linux-libc-dev_3.12.6-2+rpi1
Package versions: ant_1.9.3-1 apt_0.9.14.2 autoconf_2.69-2 automake_1:1.14.1-2 autopoint_0.18.3.1-2 autotools-dev_20130810.1 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.24-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 ca-certificates_20130906 ca-certificates-java_20130815 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.8.2-1 cpp-4.6_4.6.4-5+rpi1 cpp-4.8_4.8.2-12 dash_0.5.7-3+nmu1 dctrl-tools_2.23 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debianutils_4.4 default-jdk_1:1.7-49 default-jre_1:1.7-49 default-jre-headless_1:1.7-49 devscripts_2.13.9 dh-autoreconf_9 dh-linktree_0.4 dh-python_1.20131021-1 diffutils_1:3.3-1 doxygen_1.8.6-1 dpkg_1.17.5+rpi1 dpkg-dev_1.17.5+rpi1 e2fslibs_1.42.9-2 e2fsprogs_1.42.9-2 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-7 fontconfig_2.11.0-2 fontconfig-config_2.11.0-2 fonts-dejavu-core_2.34-1 g++_4:4.8.2-1 g++-4.6_4.6.4-5+rpi1 g++-4.8_4.8.2-12 gcc_4:4.8.2-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-5+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-9+rpi1 gcc-4.8_4.8.2-12 gcc-4.8-base_4.8.2-12 gettext_0.18.3.1-2 gettext-base_0.18.3.1-2 gnupg_1.4.16-1 gpgv_1.4.16-1 graphviz_2.26.3-16 grep_2.15-2 groff-base_1.22.2-4 gzip_1.6-3 hostname_3.15 initramfs-tools_0.115 initscripts_2.88dsf-45 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 java-common_0.49 javahelper_0.45 klibc-utils_2.0.2-1+rpi1 kmod_16-2 libacl1_2.2.52-1 libapt-pkg4.12_0.9.14.2 libarchive-extract-perl_0.70-1 libarchive-zip-perl_1.30-7 libasan0_4.8.2-12 libasound2_1.0.27.2-3 libasound2-data_1.0.27.2-3 libasprintf0c2_0.18.3.1-2 libasyncns0_0.8-4 libatk-wrapper-java_0.30.4-4 libatk-wrapper-java-jni_0.30.4-4 libatk1.0-0_2.10.0-2 libatk1.0-data_2.10.0-2 libatomic1_4.8.2-12 libattr1_1:2.4.47-1 libaudit-common_1:2.3.2-3 libaudit1_1:2.3.2-3 libavahi-client3_0.6.31-4 libavahi-common-data_0.6.31-4 libavahi-common3_0.6.31-4 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-5 libc-bin_2.17-97 libc-dev-bin_2.17-97 libc6_2.17-97 libc6-dev_2.17-97 libcairo2_1.12.16-2+rpi1 libcap2_1:2.22-1.2 libcdt4_2.26.3-16 libcgraph5_2.26.3-16 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.1-3 libcomerr2_1.42.9-2 libcroco3_0.6.8-2 libcups2_1.6.4-2+rpi1 libdatrie1_0.2.8-1 libdb5.1_5.1.29-6 libdbus-1-3_1.7.10-2 libdpkg-perl_1.17.5+rpi1 libdrm2_2.4.50-1 libexpat1_2.1.0-4 libffi6_3.0.13-4 libflac8_1.3.0-2 libfontconfig1_2.11.0-2 libfreetype6_2.5.2-1 libgc1c2_1:7.2d-6 libgcc-4.8-dev_4.8.2-12 libgcc1_1:4.8.2-12 libgcrypt11_1.5.3-3 libgd3_2.1.0-3 libgdbm3_1.8.3-12 libgdk-pixbuf2.0-0_2.28.2-1 libgdk-pixbuf2.0-common_2.28.2-1 libgif4_4.1.6-11 libgl1-mesa-glx_9.2.2-1 libglapi-mesa_9.2.2-1 libglib2.0-0_2.36.4-1 libgmp10_2:5.1.3+dfsg-1 libgnutls26_2.12.23-8 libgomp1_4.8.2-12 libgpg-error0_1.12-0.2 libgraph4_2.26.3-16 libgraphite2-3_1.2.4-1 libgssapi-krb5-2_1.11.3+dfsg-3+nmu1 libgtk2.0-0_2.24.22-1 libgtk2.0-common_2.24.22-1 libgvc5_2.26.3-16 libgvpr1_2.26.3-16 libharfbuzz0b_0.9.25-1 libice6_2:1.0.8-2 libisl10_0.12.1-2 libjasper1_1.900.1-14 libjbig0_2.0-2 libjpeg8_8d-2 libjs-jquery_1.7.2+dfsg-3 libjson-c2_0.11-3 libk5crypto3_1.11.3+dfsg-3+nmu1 libkeyutils1_1.5.6-1 libklibc_2.0.2-1+rpi1 libkmod2_16-2 libkrb5-3_1.11.3+dfsg-3+nmu1 libkrb5support0_1.11.3+dfsg-3+nmu1 liblcms2-2_2.2+git20110628-2.3 liblog-message-simple-perl_0.10-1 libltdl7_2.4.2-1.6 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmodule-pluggable-perl_5.1-1 libmount1_2.20.1-5.5 libmpc3_1.0.1-1 libmpfr4_3.1.2-1 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libnih-dbus1_1.0.3-4.2 libnih1_1.0.3-4.2 libnspr4_2:4.10.2-1 libnss3_2:3.15.3.1-1 libogg0_1.3.1-1 libp11-kit0_0.20.1-3 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango-1.0-0_1.36.0-1+b1 libpangocairo-1.0-0_1.36.0-1+b1 libpangoft2-1.0-0_1.36.0-1+b1 libpathplan4_2.26.3-16 libpcre3_1:8.31-2 libpcsclite1_1.8.10-1 libpipeline1_1.2.6-1 libpixman-1-0_0.32.4-1 libpng12-0_1.2.49-5 libpod-latex-perl_0.61-1 libprocps0_1:3.3.4-2 libpulse0_4.0-6+b2 libpython3-stdlib_3.3.2-17 libpython3.3-minimal_3.3.3-5 libpython3.3-stdlib_3.3.3-5 libreadline6_6.2+dfsg-0.1 libselinux1_2.2.2-1 libsemanage-common_2.2-1 libsemanage1_2.2-1 libsepol1_2.2-1 libsigsegv2_2.10-2 libslang2_2.2.4-16 libsm6_2:1.2.1-2 libsndfile1_1.0.25-7 libsqlite3-0_3.8.2-1 libss2_1.42.9-2 libssl1.0.0_1.0.1f-1 libstdc++-4.8-dev_4.8.2-12 libstdc++6_4.8.2-12 libstdc++6-4.6-dev_4.6.4-5+rpi1 libswitch-perl_2.16-2 libtasn1-3_2.14-3 libterm-ui-perl_0.42-1 libthai-data_0.1.20-1 libthai0_0.1.20-1 libtiff4_3.9.7-3 libtimedate-perl_2.3000-1 libtinfo5_5.9+20130608-1 libtool_2.4.2-1.6 libudev0_175-7.2 libudev1_204-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.3 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libvorbis0a_1.3.2-1.3 libvorbisenc2_1.3.2-1.3 libvpx1_1.3.0-2+rpi1 libwrap0_7.6.q-25 libx11-6_2:1.6.2-1 libx11-data_2:1.6.2-1 libx11-xcb1_2:1.6.2-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.11-1 libxcb-dri2-0_1.10-2 libxcb-glx0_1.10-2 libxcb-render0_1.10-2 libxcb-shm0_1.10-2 libxcb1_1.10-2 libxcomposite1_1:0.4.4-1 libxcursor1_1:1.1.14-1 libxdamage1_1:1.1.4-1 libxdmcp6_1:1.1.1-1 libxdot4_2.26.3-16 libxerces2-java_2.11.0-7 libxext6_2:1.3.2-1 libxfixes3_1:5.0.1-1 libxi6_2:1.7.2-1 libxinerama1_2:1.1.3-1 libxml-commons-external-java_1.4.01-2 libxml-commons-resolver1.1-java_1.2-7 libxml2_2.9.1+dfsg1-3 libxmu6_2:1.1.1-1 libxpm4_1:3.5.10-1 libxrandr2_2:1.4.1-1 libxrender1_1:0.9.8-1 libxt6_1:1.1.4-1 libxtst6_2:1.2.2-1 libxxf86vm1_1:1.1.3-1 linux-libc-dev_3.12.6-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12+rpi1 m4_1.4.16-5 make_3.81-8.3 makedev_2.3.1-93 man-db_2.6.5-3 mawk_1.3.3-17 mime-support_3.54 mount_2.20.1-5.5 mountall_2.52 multiarch-support_2.17-97 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 openjdk-7-jdk_7u45-2.4.3-4 openjdk-7-jre_7u45-2.4.3-4 openjdk-7-jre-headless_7u45-2.4.3-4 openssl_1.0.1f-1 passwd_1:4.1.5.1-1 patch_2.7.1-4 perl_5.18.1-5 perl-base_5.18.1-5 perl-modules_5.18.1-5 plymouth_0.8.8-6+deb8u3 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 python3_3.3.2-17 python3-minimal_3.3.2-17 python3.3_3.3.3-5 python3.3-minimal_3.3.3-5 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libhmsbeagle-dummy_0.invalid.0 sed_4.2.2-3 sensible-utils_0.0.9 shared-mime-info_1.0-1 sysv-rc_2.88dsf-45 sysvinit_2.88dsf-45 sysvinit-core_2.88dsf-45 sysvinit-utils_2.88dsf-45 tar_1.26+dfsg-8 tzdata_2013i-1 tzdata-java_2013i-1 ucf_3.0027+nmu1 udev_204-6 util-linux_2.20.1-5.5 x11-common_1:7.7+5 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon Jan 13 16:07:55 2014 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./libhmsbeagle_2.1-2.dsc
dpkg-source: info: extracting libhmsbeagle in libhmsbeagle-2.1
dpkg-source: info: unpacking libhmsbeagle_2.1.orig.tar.xz
dpkg-source: info: unpacking libhmsbeagle_2.1-2.debian.tar.gz
dpkg-source: info: applying enable_static.patch
dpkg-source: info: applying gcc-4.7.patch
dpkg-source: info: applying doxygen_update.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=root
MAIL=/var/mail/root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-3d5c25c1-79ff-4ab3-b0ba-5b01c625ac7a
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=192.168.1.2 56681 22
SSH_CONNECTION=192.168.1.2 56681 192.168.1.46 22
SSH_TTY=/dev/pts/0
TERM=xterm
USER=buildd
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package libhmsbeagle
dpkg-buildpackage: source version 2.1-2
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build libhmsbeagle-2.1
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with autoreconf --with javahelper
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory `/«PKGBUILDDIR»'
/usr/bin/make -f Makefile distclean || true
make[2]: Entering directory `/«PKGBUILDDIR»'
make[2]: Makefile: No such file or directory
make[2]: *** No rule to make target `Makefile'. Stop.
make[2]: Leaving directory `/«PKGBUILDDIR»'
rm -rf doc .config configure
rm -rf lib build
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_autoreconf_clean
jh_clean
dh_clean
debian/rules build-arch
dh build-arch --with autoreconf --with javahelper
dh_testdir -a
dh_autoreconf -a
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.config'.
libtoolize: copying file `.config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
libtoolize: copying file `m4/libtool.m4'
libtoolize: copying file `m4/ltoptions.m4'
libtoolize: copying file `m4/ltsugar.m4'
libtoolize: copying file `m4/ltversion.m4'
libtoolize: copying file `m4/lt~obsolete.m4'
configure.ac:59: installing '.config/compile'
configure.ac:65: installing '.config/config.guess'
configure.ac:65: installing '.config/config.sub'
configure.ac:57: installing '.config/install-sh'
configure.ac:57: installing '.config/missing'
Makefile.am: installing './INSTALL'
examples/complextest/Makefile.am: installing '.config/depcomp'
parallel-tests: installing '.config/test-driver'
debian/rules override_dh_auto_configure
make[1]: Entering directory `/«PKGBUILDDIR»'
./autogen.sh
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.config'.
libtoolize: copying file `.config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
libtoolize: copying file `m4/libtool.m4'
libtoolize: copying file `m4/ltoptions.m4'
libtoolize: copying file `m4/ltsugar.m4'
libtoolize: copying file `m4/ltversion.m4'
libtoolize: copying file `m4/lt~obsolete.m4'
dh_auto_configure -- --enable-doxygen-man --enable-march-native=no --enable-sse=no
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking whether ln -s works... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 805306365
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for library containing lt_dlinit... no
checking for library containing dlopen... -ldl
checking if gcc accepts -dumpversion option... yes
checking gcc version... 4.8
checking for /usr/include/CL... no
checking for /usr/local/cuda/... no
checking for /usr/local/cuda/include... no
checking for /usr/local/cuda/lib... no
checking for javac... javac
checking for javac... /usr/bin/javac
checking symlink for /usr/bin/javac... /etc/alternatives/javac
checking symlink for /etc/alternatives/javac... /usr/lib/jvm/java-7-openjdk-armhf/bin/javac
checking for doxygen... /usr/bin/doxygen
checking for perl... /usr/bin/perl
checking for dot... /usr/bin/dot
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating hmsbeagle-2.pc
config.status: creating libhmsbeagle/Makefile
config.status: creating libhmsbeagle/GPU/Makefile
config.status: creating libhmsbeagle/GPU/kernels/Makefile
config.status: creating libhmsbeagle/CPU/Makefile
config.status: creating libhmsbeagle/plugin/Makefile
config.status: creating libhmsbeagle/JNI/Makefile
config.status: creating examples/Makefile
config.status: creating examples/tinytest/Makefile
config.status: creating examples/complextest/Makefile
config.status: creating examples/oddstatetest/Makefile
config.status: creating examples/fourtaxon/Makefile
config.status: creating examples/genomictest/Makefile
config.status: creating examples/matrixtest/Makefile
config.status: creating libhmsbeagle/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
configure: WARNING: OpenCL not found or disabled. OpenCL implementation will not be built. If OpenCL support is desired, check the path to OpenCL and specify --with-opencl=/path/to/opencl
configure: WARNING: NVIDIA CUDA nvcc compiler not found or CUDA support disabled. CUDA implementation will not be built. If CUDA support is desired, check the path to CUDA and specify --with-cuda=/path/to/cuda
make[1]: Leaving directory `/«PKGBUILDDIR»'
jh_linkjars -a
debian/rules override_dh_auto_build
make[1]: Entering directory `/«PKGBUILDDIR»'
/usr/bin/make
make[2]: Entering directory `/«PKGBUILDDIR»'
Making all in libhmsbeagle
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
/usr/bin/make all-recursive
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
Making all in GPU
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
Making all in kernels
make[6]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
/usr/bin/make all-am
make[7]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[7]: Nothing to be done for `all-am'.
make[7]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[6]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[6]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[6]: Nothing to be done for `all-am'.
make[6]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
Making all in CPU
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/«PKGBUILDDIR» -I/«PKGBUILDDIR» -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libhmsbeagle_cpu_la-BeagleCPUPlugin.lo `test -f 'BeagleCPUPlugin.cpp' || echo './'`BeagleCPUPlugin.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/«PKGBUILDDIR» -I/«PKGBUILDDIR» -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c BeagleCPUPlugin.cpp -fPIC -DPIC -o .libs/libhmsbeagle_cpu_la-BeagleCPUPlugin.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/«PKGBUILDDIR» -I/«PKGBUILDDIR» -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c BeagleCPUPlugin.cpp -o libhmsbeagle_cpu_la-BeagleCPUPlugin.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -module -version-number 21 -Wl,-z,relro -o libhmsbeagle-cpu.la -rpath /usr/lib/arm-linux-gnueabihf libhmsbeagle_cpu_la-BeagleCPUPlugin.lo -ldl
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/4.8/crtbeginS.o .libs/libhmsbeagle_cpu_la-BeagleCPUPlugin.o -ldl -L/usr/lib/gcc/arm-linux-gnueabihf/4.8 -L/usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/4.8/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf/crtn.o -O2 -Wl,-z -Wl,relro -Wl,-soname -Wl,libhmsbeagle-cpu.so.21 -o .libs/libhmsbeagle-cpu.so.21.0.0
libtool: link: (cd ".libs" && rm -f "libhmsbeagle-cpu.so.21" && ln -s "libhmsbeagle-cpu.so.21.0.0" "libhmsbeagle-cpu.so.21")
libtool: link: (cd ".libs" && rm -f "libhmsbeagle-cpu.so" && ln -s "libhmsbeagle-cpu.so.21.0.0" "libhmsbeagle-cpu.so")
libtool: link: ar cru .libs/libhmsbeagle-cpu.a libhmsbeagle_cpu_la-BeagleCPUPlugin.o
libtool: link: ranlib .libs/libhmsbeagle-cpu.a
libtool: link: ( cd ".libs" && rm -f "libhmsbeagle-cpu.la" && ln -s "../libhmsbeagle-cpu.la" "libhmsbeagle-cpu.la" )
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
Making all in plugin
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libplugin_la-Plugin.lo `test -f 'Plugin.cpp' || echo './'`Plugin.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c Plugin.cpp -fPIC -DPIC -o .libs/libplugin_la-Plugin.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c Plugin.cpp -o libplugin_la-Plugin.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libplugin_la-UnixSharedLibrary.lo `test -f 'UnixSharedLibrary.cpp' || echo './'`UnixSharedLibrary.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c UnixSharedLibrary.cpp -fPIC -DPIC -o .libs/libplugin_la-UnixSharedLibrary.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c UnixSharedLibrary.cpp -o libplugin_la-UnixSharedLibrary.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -o libplugin.la libplugin_la-Plugin.lo libplugin_la-UnixSharedLibrary.lo -ldl
libtool: link: ar cru .libs/libplugin.a .libs/libplugin_la-Plugin.o .libs/libplugin_la-UnixSharedLibrary.o
libtool: link: ranlib .libs/libplugin.a
libtool: link: ( cd ".libs" && rm -f "libplugin.la" && ln -s "../libplugin.la" "libplugin.la" )
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libhmsbeagle_la-beagle.lo `test -f 'beagle.cpp' || echo './'`beagle.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c beagle.cpp -fPIC -DPIC -o .libs/libhmsbeagle_la-beagle.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c beagle.cpp -o libhmsbeagle_la-beagle.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -version-info 2:1:1 -Wl,-z,relro -o libhmsbeagle.la -rpath /usr/lib/arm-linux-gnueabihf libhmsbeagle_la-beagle.lo plugin/libplugin.la -ldl
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/4.8/crtbeginS.o .libs/libhmsbeagle_la-beagle.o -Wl,--whole-archive plugin/.libs/libplugin.a -Wl,--no-whole-archive -ldl -L/usr/lib/gcc/arm-linux-gnueabihf/4.8 -L/usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/4.8/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf/crtn.o -O2 -Wl,-z -Wl,relro -Wl,-soname -Wl,libhmsbeagle.so.1 -o .libs/libhmsbeagle.so.1.1.1
libtool: link: (cd ".libs" && rm -f "libhmsbeagle.so.1" && ln -s "libhmsbeagle.so.1.1.1" "libhmsbeagle.so.1")
libtool: link: (cd ".libs" && rm -f "libhmsbeagle.so" && ln -s "libhmsbeagle.so.1.1.1" "libhmsbeagle.so")
libtool: link: (cd .libs/libhmsbeagle.lax/libplugin.a && ar x "/«PKGBUILDDIR»/libhmsbeagle/plugin/.libs/libplugin.a")
libtool: link: ar cru .libs/libhmsbeagle.a libhmsbeagle_la-beagle.o .libs/libhmsbeagle.lax/libplugin.a/libplugin_la-Plugin.o .libs/libhmsbeagle.lax/libplugin.a/libplugin_la-UnixSharedLibrary.o
libtool: link: ranlib .libs/libhmsbeagle.a
libtool: link: rm -fr .libs/libhmsbeagle.lax
libtool: link: ( cd ".libs" && rm -f "libhmsbeagle.la" && ln -s "../libhmsbeagle.la" "libhmsbeagle.la" )
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
Making all in libhmsbeagle/JNI
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/JNI'
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo `test -f 'beagle_BeagleJNIWrapper.cpp' || echo './'`beagle_BeagleJNIWrapper.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c beagle_BeagleJNIWrapper.cpp -fPIC -DPIC -o .libs/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c beagle_BeagleJNIWrapper.cpp -o libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -module -avoid-version -Wl,-z,relro -o libhmsbeagle-jni.la -rpath /usr/lib/arm-linux-gnueabihf libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo -L../../libhmsbeagle -lhmsbeagle -ldl
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/4.8/crtbeginS.o .libs/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o -Wl,-rpath -Wl,/«PKGBUILDDIR»/libhmsbeagle/.libs -L../../libhmsbeagle /«PKGBUILDDIR»/libhmsbeagle/.libs/libhmsbeagle.so -ldl -L/usr/lib/gcc/arm-linux-gnueabihf/4.8 -L/usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/4.8/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf/crtn.o -O2 -Wl,-z -Wl,relro -Wl,-soname -Wl,libhmsbeagle-jni.so -o .libs/libhmsbeagle-jni.so
libtool: link: ar cru .libs/libhmsbeagle-jni.a libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o
libtool: link: ranlib .libs/libhmsbeagle-jni.a
libtool: link: ( cd ".libs" && rm -f "libhmsbeagle-jni.la" && ln -s "../libhmsbeagle-jni.la" "libhmsbeagle-jni.la" )
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/JNI'
Making all in examples
make[3]: Entering directory `/«PKGBUILDDIR»/examples'
Making all in genomictest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
Making all in tinytest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
Making all in oddstatetest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
Making all in complextest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
Making all in fourtaxon
make[4]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
Making all in matrixtest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
make[4]: Entering directory `/«PKGBUILDDIR»/examples'
make[4]: Nothing to be done for `all-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples'
make[3]: Entering directory `/«PKGBUILDDIR»'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/«PKGBUILDDIR»'
make[2]: Leaving directory `/«PKGBUILDDIR»'
/usr/bin/make doxygen-doc
make[2]: Entering directory `/«PKGBUILDDIR»'
rm -rf doc
SRCDIR='.' PROJECT='libhmsbeagle' DOCDIR='doc' VERSION='2.1' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='YES' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='NO' /usr/bin/doxygen ./beagle.dox
Notice: Output directory `doc' does not exist. I have created it for you.
Searching for include files...
Searching for example files...
Searching for images...
Searching for dot files...
Searching for msc files...
Searching for dia files...
Searching for files to exclude
Searching for files to process...
Searching for files in directory /«PKGBUILDDIR»/libhmsbeagle
Reading and parsing tag files
Parsing files
Preprocessing /«PKGBUILDDIR»/libhmsbeagle/beagle.h...
Parsing file /«PKGBUILDDIR»/libhmsbeagle/beagle.h...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Associating documentation with classes...
Computing nesting relations for classes...
Building example list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Creating members for template instances...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Sorting lists...
Freeing entry tree
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Computing dependencies between directories...
Generating citations page...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Generating style sheet...
Generating search indices...
Generating example documentation...
Generating file sources...
Generating code for file libhmsbeagle/beagle.h...
Generating file documentation...
Generating docs for file libhmsbeagle/beagle.h...
Generating page documentation...
Generating group documentation...
Generating class documentation...
Generating docs for compound BeagleInstanceDetails...
Generating docs for compound BeagleOperation...
Generating docs for compound BeagleResource...
Generating docs for compound BeagleResourceList...
Generating namespace index...
Generating graph info page...
Generating directory documentation...
Generating dependency graph for directory libhmsbeagle
Generating index page...
Generating page index...
Generating module index...
Generating namespace index...
Generating namespace member index...
Generating annotated compound index...
Generating alphabetical compound index...
Generating hierarchical class index...
Generating graphical class hierarchy...
Generating member index...
Generating file index...
Generating file member index...
Generating example index...
finalizing index lists...
Running dot...
Generating dot graphs using 5 parallel threads...
Running dot for graph 1/4
Running dot for graph 2/4
Running dot for graph 3/4
Running dot for graph 4/4
Patching output file 1/3
Patching output file 2/3
Patching output file 3/3
lookup cache used 96/65536 hits=137 misses=97
finished...
make[2]: Leaving directory `/«PKGBUILDDIR»'
ant
Buildfile: /«PKGBUILDDIR»/build.xml
init:
[mkdir] Created dir: /«PKGBUILDDIR»/build
[mkdir] Created dir: /«PKGBUILDDIR»/lib
compile:
[javac] /«PKGBUILDDIR»/build.xml:37: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 13 source files to /«PKGBUILDDIR»/build
[javac] warning: [options] bootstrap class path not set in conjunction with -source 1.6
[javac] 1 warning
dist:
[jar] Building jar: /«PKGBUILDDIR»/lib/beagle.jar
BUILD SUCCESSFUL
Total time: 17 seconds
make[1]: Leaving directory `/«PKGBUILDDIR»'
jh_build -a
dh_auto_test -a
make[1]: Entering directory `/«PKGBUILDDIR»'
Making check in libhmsbeagle
make[2]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
Making check in GPU
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
Making check in kernels
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make check-am
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[5]: Nothing to be done for `check-am'.
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[4]: Nothing to be done for `check-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
Making check in CPU
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
make[3]: Nothing to be done for `check'.
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
Making check in plugin
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[3]: Nothing to be done for `check'.
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
make[2]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
Making check in libhmsbeagle/JNI
make[2]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/JNI'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/JNI'
Making check in examples
make[2]: Entering directory `/«PKGBUILDDIR»/examples'
Making check in genomictest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
make genomictest genomictest.sh
make[4]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o genomictest.o genomictest.cpp
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o linalg.o linalg.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -o genomictest genomictest.o linalg.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z -Wl,relro -o .libs/genomictest genomictest.o linalg.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl
echo './genomictest' > genomictest.sh
echo './genomictest --states 64 --sites 100 --taxa 10' >> genomictest.sh
chmod +x genomictest.sh
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
make check-TESTS
make[4]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
make[5]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
PASS: genomictest.sh
make[6]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
============================================================================
Testsuite summary for libhmsbeagle 2.1
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
Making check in tinytest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
make tinytest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o tinytest.o tinytest.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -o tinytest tinytest.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z -Wl,relro -o .libs/tinytest tinytest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
make check-TESTS
make[4]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
make[5]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
PASS: tinytest
make[6]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
============================================================================
Testsuite summary for libhmsbeagle 2.1
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
Making check in oddstatetest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
make oddstatetest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o oddstatetest.o oddstatetest.cpp
oddstatetest.cpp: In function 'int main(int, const char**)':
oddstatetest.cpp:444:36: warning: passing NULL to non-pointer argument 1 of 'void runBeagle(int, int, int, int, bool, bool, int)' [-Wconversion-null]
rateCategoryCount);
^
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -o oddstatetest oddstatetest.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z -Wl,relro -o .libs/oddstatetest oddstatetest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
make check-TESTS
make[4]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
make[5]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
PASS: oddstatetest
make[6]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
============================================================================
Testsuite summary for libhmsbeagle 2.1
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
Making check in complextest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
make complextest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o complextest.o complextest.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -o complextest complextest.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z -Wl,relro -o .libs/complextest complextest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
make check-TESTS
make[4]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
make[5]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
PASS: complextest
make[6]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
============================================================================
Testsuite summary for libhmsbeagle 2.1
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
Making check in fourtaxon
make[3]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
make fourtaxon fourtaxonrun.sh
make[4]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o fourtaxon.o fourtaxon.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -o fourtaxon fourtaxon.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z -Wl,relro -o .libs/fourtaxon fourtaxon.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl
echo './fourtaxon --niters 4 --filename ./fourtaxon.dat' > fourtaxonrun.sh
chmod +x fourtaxonrun.sh
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
make check-TESTS
make[4]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
make[5]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
PASS: fourtaxonrun.sh
make[6]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
============================================================================
Testsuite summary for libhmsbeagle 2.1
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
Making check in matrixtest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
make matrixtest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o matrixtest.o matrixtest.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -o matrixtest matrixtest.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z -Wl,relro -o .libs/matrixtest matrixtest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
make check-TESTS
make[4]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
make[5]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
PASS: matrixtest
make[6]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
============================================================================
Testsuite summary for libhmsbeagle 2.1
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
make[3]: Entering directory `/«PKGBUILDDIR»/examples'
make[3]: Nothing to be done for `check-am'.
make[3]: Leaving directory `/«PKGBUILDDIR»/examples'
make[2]: Leaving directory `/«PKGBUILDDIR»/examples'
make[2]: Entering directory `/«PKGBUILDDIR»'
make[2]: Nothing to be done for `check-am'.
make[2]: Leaving directory `/«PKGBUILDDIR»'
make[1]: Leaving directory `/«PKGBUILDDIR»'
fakeroot debian/rules binary-arch
dh binary-arch --with autoreconf --with javahelper
dh_testroot -a
dh_prep -a
dh_installdirs -a
dh_auto_install -a
make[1]: Entering directory `/«PKGBUILDDIR»'
Making install in libhmsbeagle
make[2]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
Making install in GPU
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
Making install in kernels
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make install-am
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[6]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[6]: Nothing to be done for `install-exec-am'.
make[6]: Nothing to be done for `install-data-am'.
make[6]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[5]: Nothing to be done for `install-data-am'.
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
Making install in CPU
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ../../libtool --mode=install /usr/bin/install -c libhmsbeagle-cpu.la '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libhmsbeagle-cpu.so.21.0.0 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.so.21.0.0
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libhmsbeagle-cpu.so.21.0.0 libhmsbeagle-cpu.so.21 || { rm -f libhmsbeagle-cpu.so.21 && ln -s libhmsbeagle-cpu.so.21.0.0 libhmsbeagle-cpu.so.21; }; })
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libhmsbeagle-cpu.so.21.0.0 libhmsbeagle-cpu.so || { rm -f libhmsbeagle-cpu.so && ln -s libhmsbeagle-cpu.so.21.0.0 libhmsbeagle-cpu.so; }; })
libtool: install: /usr/bin/install -c .libs/libhmsbeagle-cpu.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.la
libtool: install: /usr/bin/install -c .libs/libhmsbeagle-cpu.a /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.a
libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.a
libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.a
libtool: install: warning: remember to run `libtool --finish /usr/lib/arm-linux-gnueabihf'
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
Making install in plugin
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ../libtool --mode=install /usr/bin/install -c libhmsbeagle.la '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libhmsbeagle.so.1.1.1 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle.so.1.1.1
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libhmsbeagle.so.1.1.1 libhmsbeagle.so.1 || { rm -f libhmsbeagle.so.1 && ln -s libhmsbeagle.so.1.1.1 libhmsbeagle.so.1; }; })
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libhmsbeagle.so.1.1.1 libhmsbeagle.so || { rm -f libhmsbeagle.so && ln -s libhmsbeagle.so.1.1.1 libhmsbeagle.so; }; })
libtool: install: /usr/bin/install -c .libs/libhmsbeagle.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle.la
libtool: install: /usr/bin/install -c .libs/libhmsbeagle.a /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle.a
libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle.a
libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle.a
libtool: install: warning: remember to run `libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libhmsbeagle-2/libhmsbeagle'
/usr/bin/install -c -m 644 beagle.h platform.h '/«PKGBUILDDIR»/debian/tmp/usr/include/libhmsbeagle-2/libhmsbeagle'
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
make[2]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
Making install in libhmsbeagle/JNI
make[2]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/JNI'
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/JNI'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ../../libtool --mode=install /usr/bin/install -c libhmsbeagle-jni.la '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: warning: relinking `libhmsbeagle-jni.la'
libtool: install: (cd /«PKGBUILDDIR»/libhmsbeagle/JNI; /bin/bash /«PKGBUILDDIR»/libtool --tag CXX --mode=relink g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -module -avoid-version -Wl,-z,relro -o libhmsbeagle-jni.la -rpath /usr/lib/arm-linux-gnueabihf libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo -L../../libhmsbeagle -lhmsbeagle -ldl -inst-prefix-dir /«PKGBUILDDIR»/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/4.8/crtbeginS.o .libs/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o -L../../libhmsbeagle -L/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lhmsbeagle -ldl -L/usr/lib/gcc/arm-linux-gnueabihf/4.8 -L/usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.8/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/4.8/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf/crtn.o -O2 -Wl,-z -Wl,relro -Wl,-soname -Wl,libhmsbeagle-jni.so -o .libs/libhmsbeagle-jni.so
libtool: install: /usr/bin/install -c .libs/libhmsbeagle-jni.soT /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-jni.so
libtool: install: /usr/bin/install -c .libs/libhmsbeagle-jni.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-jni.la
libtool: install: /usr/bin/install -c .libs/libhmsbeagle-jni.a /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-jni.a
libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-jni.a
libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-jni.a
libtool: install: warning: remember to run `libtool --finish /usr/lib/arm-linux-gnueabihf'
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/JNI'
make[2]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/JNI'
Making install in examples
make[2]: Entering directory `/«PKGBUILDDIR»/examples'
Making install in genomictest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
make[4]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
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Making install in tinytest
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/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 hmsbeagle-2.pc '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
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debian/rules override_dh_install
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_install
jniso=`find debian/libhmsbeagle1 -name libhmsbeagle-jni.so` ; \
mkdir -p `dirname $jniso`/jni ; \
mv $jniso `dirname $jniso`/jni
make[1]: Leaving directory `/«PKGBUILDDIR»'
jh_installjavadoc -a
debian/rules override_dh_installdocs
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_installdocs
find debian/libhmsbeagle-dev -name jquery.js -delete
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
jh_installlibs -a
jh_classpath -a
jh_manifest -a
jh_exec -a
jh_depends -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package libhmsbeagle-dev: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: Depends field of package libhmsbeagle-java: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package `libhmsbeagle-dev' in `../libhmsbeagle-dev_2.1-2_armhf.deb'.
dpkg-deb: building package `libhmsbeagle-java' in `../libhmsbeagle-java_2.1-2_armhf.deb'.
dpkg-deb: building package `libhmsbeagle1' in `../libhmsbeagle1_2.1-2_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libhmsbeagle_2.1-2_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build libhmsbeagle-2.1
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20140119-0555
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
libhmsbeagle_2.1-2_armhf.changes:
─────────────────────────────────
Format: 1.8
Date: Mon, 13 Jan 2014 17:00:56 +0100
Source: libhmsbeagle
Binary: libhmsbeagle-dev libhmsbeagle1 libhmsbeagle-java
Architecture: armhf
Version: 2.1-2
Distribution: jessie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libhmsbeagle-dev - High-performance lib for Bayesian and Maximum Likelihood phylogen
libhmsbeagle-java - High-performance lib for Bayesian and Maximum Likelihood phylogen
libhmsbeagle1 - High-performance lib for Bayesian and Maximum Likelihood phylogen
Changes:
libhmsbeagle (2.1-2) unstable; urgency=medium
.
* debian/libhmsbeagle-dev.links: Link to non-versioned include files since
it is used that way in mrbayes (and probably others)
Checksums-Sha1:
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148012d3e399482092ac696a94ebde3f80d34df0 49584 libhmsbeagle1_2.1-2_armhf.deb
412267a8bde07d896c7bdb8b028e7d63487b0619 23234 libhmsbeagle-java_2.1-2_armhf.deb
Checksums-Sha256:
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Files:
2cd14eceb9740fff0a983d52710912f5 151480 libdevel optional libhmsbeagle-dev_2.1-2_armhf.deb
34a663078d2e4060156c560a10f39458 49584 libs optional libhmsbeagle1_2.1-2_armhf.deb
f05343e3b808c1243ca4292a0b791975 23234 java optional libhmsbeagle-java_2.1-2_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
libhmsbeagle-dev_2.1-2_armhf.deb
────────────────────────────────
new debian package, version 2.0.
size 151480 bytes: control archive=4240 bytes.
1226 bytes, 26 lines control
11725 bytes, 132 lines md5sums
Package: libhmsbeagle-dev
Source: libhmsbeagle
Version: 2.1-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 839
Depends: libhmsbeagle1 (= 2.1-2)
Section: libdevel
Priority: optional
Homepage: http://code.google.com/p/beagle-lib
Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics (devel)
BEAGLE is a high-performance library that can perform the core calculations at
the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It
can make use of highly-parallel processors such as those in graphics cards
(GPUs) found in many PCs.
.
The project involves an open API and fast implementations of a library for
evaluating phylogenetic likelihoods (continuous time Markov processes) of
biomolecular sequence evolution.
.
The aim is to provide high performance evaluation 'services' to a wide range
of phylogenetic software, both Bayesian samplers and Maximum Likelihood
optimizers. This allows these packages to make use of implementations that
make use of optimized hardware such as graphics processing units.
.
This package contains development files needed to build against Beagle library.
drwxr-xr-x root/root 0 2014-01-19 05:55 ./
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drwxr-xr-x root/root 0 2014-01-19 05:54 ./usr/include/
drwxr-xr-x root/root 0 2014-01-19 05:54 ./usr/include/libhmsbeagle-2/
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-rw-r--r-- root/root 317 2013-09-12 08:59 ./usr/share/doc/libhmsbeagle-dev/README.Debian
-rw-r--r-- root/root 1262 2013-09-12 08:59 ./usr/share/doc/libhmsbeagle-dev/copyright
-rw-r--r-- root/root 1769 2014-01-13 16:03 ./usr/share/doc/libhmsbeagle-dev/changelog.Debian.gz
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drwxr-xr-x root/root 0 2014-01-19 05:54 ./usr/share/man/man3/
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lrwxrwxrwx root/root 0 2014-01-19 05:54 ./usr/lib/arm-linux-gnueabihf/libhmsbeagle.so -> libhmsbeagle.so.1.1.1
lrwxrwxrwx root/root 0 2014-01-19 05:54 ./usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.so -> libhmsbeagle-cpu.so.21.0.0
lrwxrwxrwx root/root 0 2014-01-19 05:54 ./usr/include/libhmsbeagle -> libhmsbeagle-2
libhmsbeagle1_2.1-2_armhf.deb
─────────────────────────────
new debian package, version 2.0.
size 49584 bytes: control archive=1211 bytes.
1192 bytes, 25 lines control
413 bytes, 5 lines md5sums
135 bytes, 7 lines * postinst #!/bin/sh
132 bytes, 7 lines * postrm #!/bin/sh
94 bytes, 3 lines shlibs
Package: libhmsbeagle1
Source: libhmsbeagle
Version: 2.1-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 157
Pre-Depends: multiarch-support
Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.6)
Section: libs
Priority: optional
Homepage: http://code.google.com/p/beagle-lib
Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics
BEAGLE is a high-performance library that can perform the core calculations at
the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It
can make use of highly-parallel processors such as those in graphics cards
(GPUs) found in many PCs.
.
The project involves an open API and fast implementations of a library for
evaluating phylogenetic likelihoods (continuous time Markov processes) of
biomolecular sequence evolution.
.
The aim is to provide high performance evaluation 'services' to a wide range
of phylogenetic software, both Bayesian samplers and Maximum Likelihood
optimizers. This allows these packages to make use of implementations that
make use of optimized hardware such as graphics processing units.
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drwxr-xr-x root/root 0 2014-01-19 05:54 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2014-01-19 05:54 ./usr/lib/arm-linux-gnueabihf/jni/
-rw-r--r-- root/root 13780 2014-01-19 05:54 ./usr/lib/arm-linux-gnueabihf/jni/libhmsbeagle-jni.so
-rw-r--r-- root/root 112296 2014-01-19 05:54 ./usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.so.21.0.0
-rw-r--r-- root/root 30408 2014-01-19 05:54 ./usr/lib/arm-linux-gnueabihf/libhmsbeagle.so.1.1.1
drwxr-xr-x root/root 0 2014-01-19 05:54 ./usr/share/
drwxr-xr-x root/root 0 2014-01-19 05:54 ./usr/share/doc/
drwxr-xr-x root/root 0 2014-01-19 05:54 ./usr/share/doc/libhmsbeagle1/
-rw-r--r-- root/root 1262 2013-09-12 08:59 ./usr/share/doc/libhmsbeagle1/copyright
-rw-r--r-- root/root 1769 2014-01-13 16:03 ./usr/share/doc/libhmsbeagle1/changelog.Debian.gz
lrwxrwxrwx root/root 0 2014-01-19 05:54 ./usr/lib/arm-linux-gnueabihf/libhmsbeagle.so.1 -> libhmsbeagle.so.1.1.1
lrwxrwxrwx root/root 0 2014-01-19 05:54 ./usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.so.21 -> libhmsbeagle-cpu.so.21.0.0
libhmsbeagle-java_2.1-2_armhf.deb
─────────────────────────────────
new debian package, version 2.0.
size 23234 bytes: control archive=905 bytes.
1150 bytes, 25 lines control
226 bytes, 3 lines md5sums
Package: libhmsbeagle-java
Source: libhmsbeagle
Version: 2.1-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 24
Section: java
Priority: optional
Homepage: http://code.google.com/p/beagle-lib
Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics (java)
BEAGLE is a high-performance library that can perform the core calculations at
the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It
can make use of highly-parallel processors such as those in graphics cards
(GPUs) found in many PCs.
.
The project involves an open API and fast implementations of a library for
evaluating phylogenetic likelihoods (continuous time Markov processes) of
biomolecular sequence evolution.
.
The aim is to provide high performance evaluation 'services' to a wide range
of phylogenetic software, both Bayesian samplers and Maximum Likelihood
optimizers. This allows these packages to make use of implementations that
make use of optimized hardware such as graphics processing units.
.
This package contains the Java interface.
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drwxr-xr-x root/root 0 2014-01-19 05:54 ./usr/share/doc/libhmsbeagle-java/
-rw-r--r-- root/root 1262 2013-09-12 08:59 ./usr/share/doc/libhmsbeagle-java/copyright
-rw-r--r-- root/root 1769 2014-01-13 16:03 ./usr/share/doc/libhmsbeagle-java/changelog.Debian.gz
drwxr-xr-x root/root 0 2014-01-19 05:54 ./usr/share/java/
-rw-r--r-- root/root 20473 2014-01-19 05:54 ./usr/share/java/beagle-2.1.jar
lrwxrwxrwx root/root 0 2014-01-19 05:54 ./usr/share/java/beagle.jar -> beagle-2.1.jar
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
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Purging /«BUILDDIR»
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 22576
Build-Time: 425
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 750
Job: libhmsbeagle_2.1-2
Machine Architecture: armhf
Package: libhmsbeagle
Package-Time: 1251
Source-Version: 2.1-2
Space: 22576
Status: successful
Version: 2.1-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20140119-0555
Build needed 00:20:51, 22576k disc space