libhmsbeagle →
1.1r1092-2 →
armhf → 2013-09-03 05:47:58
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testbuildd.raspbian.org
╔══════════════════════════════════════════════════════════════════════════════╗
║ libhmsbeagle 1.1r1092-2 (armhf) 03 Sep 2013 05:18 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: libhmsbeagle
Version: 1.1r1092-2
Source Version: 1.1r1092-2
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/libhmsbeagle-7I51AX/libhmsbeagle-1.1r1092' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/libhmsbeagle-7I51AX' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-2985b75c-ab27-4071-b5bd-2bfaabe3f23e' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging Release.gpg [490 B]
Get:2 http://172.17.0.1 jessie-staging Release [10.8 kB]
Get:3 http://172.17.0.1 jessie-staging/main Sources [6804 kB]
Get:4 http://172.17.0.1 jessie-staging/main armhf Packages [7924 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 14.7 MB in 1min 37s (151 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'libhmsbeagle' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/libhmsbeagle/trunk/
Need to get 286 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main libhmsbeagle 1.1r1092-2 (dsc) [1636 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main libhmsbeagle 1.1r1092-2 (tar) [279 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main libhmsbeagle 1.1r1092-2 (diff) [6292 B]
Fetched 286 kB in 0s (549 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-e47SNL/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/702 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11406 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, dh-autoreconf, doxygen, javahelper, default-jdk (>= 1:1.6), ant, dh-linktree, libjs-jquery
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, dh-autoreconf, doxygen, javahelper, default-jdk (>= 1:1.6), ant, dh-linktree, libjs-jquery
dpkg-deb: building package `sbuild-build-depends-libhmsbeagle-dummy' in `/«BUILDDIR»/resolver-KuO52F/apt_archive/sbuild-build-depends-libhmsbeagle-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install libhmsbeagle build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
ant autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
ca-certificates-java dctrl-tools debhelper default-jdk default-jre
default-jre-headless devscripts dh-autoreconf dh-linktree dh-python doxygen
file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base
groff-base intltool-debian java-common javahelper libarchive-zip-perl
libasound2 libasound2-data libasprintf0c2 libasyncns0 libatk-wrapper-java
libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3
libavahi-common-data libavahi-common3 libcairo2 libcroco3 libcups2
libdatrie1 libdrm2 libexpat1 libffi6 libflac8 libfontconfig1 libfreetype6
libgcrypt11 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif4
libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnutls26 libgpg-error0
libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0a
libice6 libjasper1 libjbig0 libjpeg8 libjs-jquery libjson-c2 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libmagic1 libnspr4 libnss3
libogg0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpcsclite1 libpipeline1 libpixman-1-0 libpng12-0 libpulse0
libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsigsegv2
libsm6 libsndfile1 libsqlite3-0 libssl1.0.0 libtasn1-3 libthai-data libthai0
libtiff4 libtool libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6
libx11-data libx11-xcb1 libxau6 libxcb-glx0 libxcb-render0 libxcb-shm0
libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java
libxext6 libxfixes3 libxi6 libxinerama1 libxml-commons-external-java
libxml-commons-resolver1.1-java libxml2 libxrandr2 libxrender1 libxtst6
libxxf86vm1 m4 man-db mime-support openjdk-7-jdk openjdk-7-jre
openjdk-7-jre-headless openjdk-7-jre-lib openssl po-debconf python3
python3-minimal python3.3 python3.3-minimal shared-mime-info ttf-dejavu-core
tzdata-java ucf x11-common
Suggested packages:
ant-gcj ant-doc autoconf2.13 autoconf-archive gnu-standards autoconf-doc
wamerican wordlist whois vacation debtags dh-make bsd-mailx mailx
cvs-buildpackage devscripts-el gnuplot libauthen-sasl-perl
libfile-desktopentry-perl libnet-smtp-ssl-perl libterm-size-perl
libyaml-syck-perl mutt ssh-client svn-buildpackage w3m doxygen-doc
doxygen-gui graphviz gettext-doc groff cvs gawk tofrodos libasound2-plugins
alsa-utils cups-common rng-tools krb5-doc krb5-user librsvg2-common gvfs
libjasper-runtime liblcms2-utils ttf-baekmuk ttf-arphic-gbsn00lp
ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp pcscd pulseaudio
libtool-doc automaken gfortran fortran95-compiler libxerces2-java-doc
libxerces2-java-gcj libxml-commons-resolver1.1-java-doc less www-browser
openjdk-7-demo openjdk-7-source visualvm icedtea-7-plugin libnss-mdns
sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei
ttf-wqy-zenhei ttf-indic-fonts libmail-box-perl python3-doc python3-tk
python3.3-doc binfmt-support
Recommended packages:
ant-optional at dput dupload libdistro-info-perl libencode-locale-perl
libjson-perl libparse-debcontrol-perl liburi-perl libwww-perl lintian
patchutils python3-debian python3-magic strace unzip wdiff wget curl
debian-keyring equivs libcrypt-ssleay-perl libsoap-lite-perl doxygen-latex
libasprintf-dev libgettextpo-dev libgl1-mesa-dri libglib2.0-data
hicolor-icon-theme libgtk2.0-bin javascript-common krb5-locales libltdl-dev
tcpd xml-core libxt-dev libgnome2-0 libgnomevfs2-0 libgconf2-4
ttf-dejavu-extra icedtea-7-jre-jamvm libmail-sendmail-perl
The following NEW packages will be installed:
ant autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
ca-certificates-java dctrl-tools debhelper default-jdk default-jre
default-jre-headless devscripts dh-autoreconf dh-linktree dh-python doxygen
file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base
groff-base intltool-debian java-common javahelper libarchive-zip-perl
libasound2 libasound2-data libasprintf0c2 libasyncns0 libatk-wrapper-java
libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3
libavahi-common-data libavahi-common3 libcairo2 libcroco3 libcups2
libdatrie1 libdrm2 libexpat1 libffi6 libflac8 libfontconfig1 libfreetype6
libgcrypt11 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif4
libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnutls26 libgpg-error0
libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0a
libice6 libjasper1 libjbig0 libjpeg8 libjs-jquery libjson-c2 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libmagic1 libnspr4 libnss3
libogg0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpcsclite1 libpipeline1 libpixman-1-0 libpng12-0 libpulse0
libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsigsegv2
libsm6 libsndfile1 libsqlite3-0 libssl1.0.0 libtasn1-3 libthai-data libthai0
libtiff4 libtool libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6
libx11-data libx11-xcb1 libxau6 libxcb-glx0 libxcb-render0 libxcb-shm0
libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java
libxext6 libxfixes3 libxi6 libxinerama1 libxml-commons-external-java
libxml-commons-resolver1.1-java libxml2 libxrandr2 libxrender1 libxtst6
libxxf86vm1 m4 man-db mime-support openjdk-7-jdk openjdk-7-jre
openjdk-7-jre-headless openjdk-7-jre-lib openssl po-debconf python3
python3-minimal python3.3 python3.3-minimal
sbuild-build-depends-libhmsbeagle-dummy shared-mime-info ttf-dejavu-core
tzdata-java ucf x11-common
0 upgraded, 148 newly installed, 0 to remove and 0 not upgraded.
Need to get 99.4 MB/99.4 MB of archives.
After this operation, 196 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.4-1 [36.9 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main libssl1.0.0 armhf 1.0.1e-2+rpi1 [1049 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-3 [666 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-2 [949 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.1-1 [29.4 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libgpg-error0 armhf 1.10-3.1 [78.5 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libgcrypt11 armhf 1.5.3-2 [296 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libp11-kit0 armhf 0.18.4-1 [109 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libtasn1-3 armhf 2.14-3 [64.1 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libgnutls26 armhf 2.12.23-5 [598 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libkeyutils1 armhf 1.5.5-7 [8024 B]
Get:13 http://172.17.0.1/private/ jessie-staging/main libkrb5support0 armhf 1.10.1+dfsg-6.1 [46.2 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main libk5crypto3 armhf 1.10.1+dfsg-6.1 [113 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main libkrb5-3 armhf 1.10.1+dfsg-6.1 [342 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main libgssapi-krb5-2 armhf 1.10.1+dfsg-6.1 [131 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libsqlite3-0 armhf 3.7.17-1 [436 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libwrap0 armhf 7.6.q-24 [59.7 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libasound2-data all 1.0.27.1-2 [62.3 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libasound2 armhf 1.0.27.1-2 [407 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libasyncns0 armhf 0.8-4 [12.8 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.4-1 [1907 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libatk1.0-data all 2.8.0-2 [169 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main libatk1.0-0 armhf 2.8.0-2 [78.1 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-4 [117 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.4.9-1.1 [401 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0027+nmu1 [70.6 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main fontconfig-config all 2.10.2-2 [251 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libfontconfig1 armhf 2.10.2-2 [306 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libpixman-1-0 armhf 0.30.2-1 [446 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.49-4 [179 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main libxcb1 armhf 1.9.1-3 [43.3 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libx11-data all 2:1.6.1-1 [125 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libx11-6 armhf 2:1.6.1-1 [861 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main libxcb-render0 armhf 1.9.1-3 [16.8 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libxcb-shm0 armhf 1.9.1-3 [10.4 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libxext6 armhf 2:1.3.2-1 [51.1 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libcairo2 armhf 1.12.14-4 [936 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libjpeg8 armhf 8d-1 [132 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libjasper1 armhf 1.900.1-14 [141 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main libjbig0 armhf 2.0-2 [31.5 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main libtiff4 armhf 3.9.7-1 [188 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main libgdk-pixbuf2.0-common all 2.28.2-1 [291 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libgdk-pixbuf2.0-0 armhf 2.28.2-1 [141 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main libgtk2.0-common all 2.24.20-1 [3139 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main libavahi-common-data armhf 0.6.31-2 [137 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main libavahi-common3 armhf 0.6.31-2 [52.6 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main libavahi-client3 armhf 0.6.31-2 [55.4 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main libcups2 armhf 1.6.3-1+rpi1 [263 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main libthai-data all 0.1.19-2 [156 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main libdatrie1 armhf 0.2.6-2 [27.0 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main libthai0 armhf 0.1.19-2 [40.5 kB]
Get:61 http://172.17.0.1/private/ jessie-staging/main fontconfig armhf 2.10.2-2 [374 kB]
Get:62 http://172.17.0.1/private/ jessie-staging/main libpango-1.0-0 armhf 1.32.5-5 [251 kB]
Get:63 http://172.17.0.1/private/ jessie-staging/main libgraphite2-3 armhf 1.2.3-1 [55.0 kB]
Get:64 http://172.17.0.1/private/ jessie-staging/main libharfbuzz0a armhf 0.9.19-1 [432 kB]
Get:65 http://172.17.0.1/private/ jessie-staging/main libpangoft2-1.0-0 armhf 1.32.5-5 [186 kB]
Get:66 http://172.17.0.1/private/ jessie-staging/main libpangocairo-1.0-0 armhf 1.32.5-5 [176 kB]
Get:67 http://172.17.0.1/private/ jessie-staging/main libxcomposite1 armhf 1:0.4.4-1 [16.8 kB]
Get:68 http://172.17.0.1/private/ jessie-staging/main libxfixes3 armhf 1:5.0.1-1 [21.0 kB]
Get:69 http://172.17.0.1/private/ jessie-staging/main libxcursor1 armhf 1:1.1.14-1 [34.7 kB]
Get:70 http://172.17.0.1/private/ jessie-staging/main libxdamage1 armhf 1:1.1.4-1 [14.6 kB]
Get:71 http://172.17.0.1/private/ jessie-staging/main libxi6 armhf 2:1.7.2-1 [76.8 kB]
Get:72 http://172.17.0.1/private/ jessie-staging/main libxinerama1 armhf 2:1.1.3-1 [16.9 kB]
Get:73 http://172.17.0.1/private/ jessie-staging/main libxrandr2 armhf 2:1.4.1-1 [33.8 kB]
Get:74 http://172.17.0.1/private/ jessie-staging/main shared-mime-info armhf 1.0-1 [1065 kB]
Get:75 http://172.17.0.1/private/ jessie-staging/main libgtk2.0-0 armhf 2.24.20-1 [1938 kB]
Get:76 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jre-lib all 7u25-2.3.12-1+rpi1 [5581 kB]
Get:77 http://172.17.0.1/private/ jessie-staging/main openssl armhf 1.0.1e-2+rpi1 [699 kB]
Get:78 http://172.17.0.1/private/ jessie-staging/main ca-certificates all 20130610 [184 kB]
Get:79 http://172.17.0.1/private/ jessie-staging/main libnspr4 armhf 2:4.10-1 [117 kB]
Get:80 http://172.17.0.1/private/ jessie-staging/main libnss3 armhf 2:3.15.1-1 [871 kB]
Get:81 http://172.17.0.1/private/ jessie-staging/main ca-certificates-java all 20130815 [14.7 kB]
Get:82 http://172.17.0.1/private/ jessie-staging/main tzdata-java all 2013d-1 [90.3 kB]
Get:83 http://172.17.0.1/private/ jessie-staging/main java-common all 0.49 [135 kB]
Get:84 http://172.17.0.1/private/ jessie-staging/main liblcms2-2 armhf 2.2+git20110628-2.2 [120 kB]
Get:85 http://172.17.0.1/private/ jessie-staging/main libpcsclite1 armhf 1.8.8-4 [54.8 kB]
Get:86 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jre-headless armhf 7u25-2.3.12-1+rpi1 [33.2 MB]
Get:87 http://172.17.0.1/private/ jessie-staging/main default-jre-headless armhf 1:1.7-49 [8648 B]
Get:88 http://172.17.0.1/private/ jessie-staging/main libgif4 armhf 4.1.6-10 [40.6 kB]
Get:89 http://172.17.0.1/private/ jessie-staging/main x11-common all 1:7.7+3 [284 kB]
Get:90 http://172.17.0.1/private/ jessie-staging/main libice6 armhf 2:1.0.8-2 [56.2 kB]
Get:91 http://172.17.0.1/private/ jessie-staging/main libjson-c2 armhf 0.11-2 [24.9 kB]
Get:92 http://172.17.0.1/private/ jessie-staging/main libsm6 armhf 2:1.2.1-2 [32.5 kB]
Get:93 http://172.17.0.1/private/ jessie-staging/main libogg0 armhf 1.3.1-1 [18.2 kB]
Get:94 http://172.17.0.1/private/ jessie-staging/main libflac8 armhf 1.3.0-1 [96.1 kB]
Get:95 http://172.17.0.1/private/ jessie-staging/main libvorbis0a armhf 1.3.2-1.3 [102 kB]
Get:96 http://172.17.0.1/private/ jessie-staging/main libvorbisenc2 armhf 1.3.2-1.3 [120 kB]
Get:97 http://172.17.0.1/private/ jessie-staging/main libsndfile1 armhf 1.0.25-7 [249 kB]
Get:98 http://172.17.0.1/private/ jessie-staging/main libx11-xcb1 armhf 2:1.6.1-1 [157 kB]
Get:99 http://172.17.0.1/private/ jessie-staging/main libxtst6 armhf 2:1.2.2-1 [26.8 kB]
Get:100 http://172.17.0.1/private/ jessie-staging/main libpulse0 armhf 4.0-6 [205 kB]
Get:101 http://172.17.0.1/private/ jessie-staging/main libdrm2 armhf 2.4.46-2 [466 kB]
Get:102 http://172.17.0.1/private/ jessie-staging/main libglapi-mesa armhf 8.0.5-6+rpi1 [52.2 kB]
Get:103 http://172.17.0.1/private/ jessie-staging/main libxcb-glx0 armhf 1.9.1-3 [27.6 kB]
Get:104 http://172.17.0.1/private/ jessie-staging/main libxxf86vm1 armhf 1:1.1.3-1 [20.0 kB]
Get:105 http://172.17.0.1/private/ jessie-staging/main libgl1-mesa-glx armhf 8.0.5-6+rpi1 [122 kB]
Get:106 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jre armhf 7u25-2.3.12-1+rpi1 [206 kB]
Get:107 http://172.17.0.1/private/ jessie-staging/main default-jre armhf 1:1.7-49 [848 B]
Get:108 http://172.17.0.1/private/ jessie-staging/main libatk-wrapper-java all 0.30.4-4 [30.1 kB]
Get:109 http://172.17.0.1/private/ jessie-staging/main libatk-wrapper-java-jni armhf 0.30.4-4 [26.1 kB]
Get:110 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:111 http://172.17.0.1/private/ jessie-staging/main libpython3.3-minimal armhf 3.3.2-4+rpi2 [605 kB]
Get:112 http://172.17.0.1/private/ jessie-staging/main mime-support all 3.54 [36.4 kB]
Get:113 http://172.17.0.1/private/ jessie-staging/main libpython3.3-stdlib armhf 3.3.2-4+rpi2 [2698 kB]
Get:114 http://172.17.0.1/private/ jessie-staging/main libsigsegv2 armhf 2.10-2 [29.2 kB]
Get:115 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:116 http://172.17.0.1/private/ jessie-staging/main python3.3-minimal armhf 3.3.2-4+rpi2 [1580 kB]
Get:117 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:118 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.1-1 [136 kB]
Get:119 http://172.17.0.1/private/ jessie-staging/main m4 armhf 1.4.16-5 [245 kB]
Get:120 http://172.17.0.1/private/ jessie-staging/main libxml-commons-resolver1.1-java all 1.2-7 [91.9 kB]
Get:121 http://172.17.0.1/private/ jessie-staging/main libxml-commons-external-java all 1.4.01-2 [245 kB]
Get:122 http://172.17.0.1/private/ jessie-staging/main libxerces2-java all 2.11.0-6 [1365 kB]
Get:123 http://172.17.0.1/private/ jessie-staging/main ant all 1.9.1-1 [1906 kB]
Get:124 http://172.17.0.1/private/ jessie-staging/main autoconf all 2.69-1.1 [336 kB]
Get:125 http://172.17.0.1/private/ jessie-staging/main autotools-dev all 20130810.1 [69.6 kB]
Get:126 http://172.17.0.1/private/ jessie-staging/main automake all 1:1.13.3-1.1 [691 kB]
Get:127 http://172.17.0.1/private/ jessie-staging/main autopoint all 0.18.3.1-1 [392 kB]
Get:128 http://172.17.0.1/private/ jessie-staging/main dctrl-tools armhf 2.23 [159 kB]
Get:129 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.1-1 [1837 kB]
Get:130 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:131 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:132 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20130720 [671 kB]
Get:133 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jdk armhf 7u25-2.3.12-1+rpi1 [14.1 MB]
Get:134 http://172.17.0.1/private/ jessie-staging/main default-jdk armhf 1:1.7-49 [848 B]
Get:135 http://172.17.0.1/private/ jessie-staging/main python3.3 armhf 3.3.2-4+rpi2 [152 kB]
Get:136 http://172.17.0.1/private/ jessie-staging/main python3-minimal armhf 3.3.2-15 [38.6 kB]
Get:137 http://172.17.0.1/private/ jessie-staging/main libpython3-stdlib armhf 3.3.2-15 [18.8 kB]
Get:138 http://172.17.0.1/private/ jessie-staging/main dh-python all 1.20130819-1 [43.0 kB]
Get:139 http://172.17.0.1/private/ jessie-staging/main python3 armhf 3.3.2-15 [22.0 kB]
Get:140 http://172.17.0.1/private/ jessie-staging/main devscripts armhf 2.13.3 [912 kB]
Get:141 http://172.17.0.1/private/ jessie-staging/main libtool armhf 2.4.2-1.3 [617 kB]
Get:142 http://172.17.0.1/private/ jessie-staging/main dh-autoreconf all 9 [15.5 kB]
Get:143 http://172.17.0.1/private/ jessie-staging/main dh-linktree all 0.3 [10.8 kB]
Get:144 http://172.17.0.1/private/ jessie-staging/main doxygen armhf 1.8.4-1 [2502 kB]
Get:145 http://172.17.0.1/private/ jessie-staging/main libarchive-zip-perl all 1.30-7 [96.5 kB]
Get:146 http://172.17.0.1/private/ jessie-staging/main javahelper all 0.43 [87.8 kB]
Get:147 http://172.17.0.1/private/ jessie-staging/main libjs-jquery all 1.7.2+dfsg-3 [96.9 kB]
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Setting up libpipeline1:armhf (1.2.4-1) ...
Setting up libssl1.0.0:armhf (1.0.1e-2+rpi1) ...
Setting up groff-base (1.22.2-3) ...
Setting up bsdmainutils (9.0.5) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.6.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.18.3.1-1) ...
Setting up libgpg-error0:armhf (1.10-3.1) ...
Setting up libgcrypt11:armhf (1.5.3-2) ...
Setting up libp11-kit0:armhf (0.18.4-1) ...
Setting up libtasn1-3:armhf (2.14-3) ...
Setting up libgnutls26:armhf (2.12.23-5) ...
Setting up libkeyutils1:armhf (1.5.5-7) ...
Setting up libkrb5support0:armhf (1.10.1+dfsg-6.1) ...
Setting up libk5crypto3:armhf (1.10.1+dfsg-6.1) ...
Setting up libkrb5-3:armhf (1.10.1+dfsg-6.1) ...
Setting up libgssapi-krb5-2:armhf (1.10.1+dfsg-6.1) ...
Setting up libmagic1:armhf (1:5.14-2) ...
Setting up libsqlite3-0:armhf (3.7.17-1) ...
Setting up libwrap0:armhf (7.6.q-24) ...
Setting up libxml2:armhf (2.9.1+dfsg1-3) ...
Setting up libasound2-data (1.0.27.1-2) ...
Setting up libasound2:armhf (1.0.27.1-2) ...
Setting up libasyncns0:armhf (0.8-4) ...
Setting up libffi6:armhf (3.0.13-4) ...
Setting up libglib2.0-0:armhf (2.36.4-1) ...
No schema files found: doing nothing.
Setting up libatk1.0-data (2.8.0-2) ...
Setting up libatk1.0-0:armhf (2.8.0-2) ...
Setting up libexpat1:armhf (2.1.0-4) ...
Setting up libfreetype6:armhf (2.4.9-1.1) ...
Setting up ucf (3.0027+nmu1) ...
Setting up fonts-dejavu-core (2.33+svn2514-3) ...
Setting up ttf-dejavu-core (2.33+svn2514-3) ...
Setting up fontconfig-config (2.10.2-2) ...
Setting up libfontconfig1:armhf (2.10.2-2) ...
Setting up libpixman-1-0:armhf (0.30.2-1) ...
Setting up libpng12-0:armhf (1.2.49-4) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up libxdmcp6:armhf (1:1.1.1-1) ...
Setting up libxcb1:armhf (1.9.1-3) ...
Setting up libx11-data (2:1.6.1-1) ...
Setting up libx11-6:armhf (2:1.6.1-1) ...
Setting up libxcb-render0:armhf (1.9.1-3) ...
Setting up libxcb-shm0:armhf (1.9.1-3) ...
Setting up libxext6:armhf (2:1.3.2-1) ...
Setting up libxrender1:armhf (1:0.9.8-1) ...
Setting up libcairo2:armhf (1.12.14-4) ...
Setting up libjpeg8:armhf (8d-1) ...
Setting up libjasper1:armhf (1.900.1-14) ...
Setting up libjbig0:armhf (2.0-2) ...
Setting up libtiff4:armhf (3.9.7-1) ...
Setting up libgdk-pixbuf2.0-common (2.28.2-1) ...
Setting up libgdk-pixbuf2.0-0:armhf (2.28.2-1) ...
Setting up libgtk2.0-common (2.24.20-1) ...
Setting up libavahi-common-data:armhf (0.6.31-2) ...
Setting up libavahi-common3:armhf (0.6.31-2) ...
Setting up libavahi-client3:armhf (0.6.31-2) ...
Setting up libcups2:armhf (1.6.3-1+rpi1) ...
Setting up libthai-data (0.1.19-2) ...
Setting up libdatrie1:armhf (0.2.6-2) ...
Setting up libthai0:armhf (0.1.19-2) ...
Setting up fontconfig (2.10.2-2) ...
Regenerating fonts cache... done.
Setting up libpango-1.0-0:armhf (1.32.5-5) ...
Setting up libgraphite2-3:armhf (1.2.3-1) ...
Setting up libharfbuzz0a:armhf (0.9.19-1) ...
Setting up libpangoft2-1.0-0:armhf (1.32.5-5) ...
Setting up libpangocairo-1.0-0:armhf (1.32.5-5) ...
Setting up libxcomposite1:armhf (1:0.4.4-1) ...
Setting up libxfixes3:armhf (1:5.0.1-1) ...
Setting up libxcursor1:armhf (1:1.1.14-1) ...
Setting up libxdamage1:armhf (1:1.1.4-1) ...
Setting up libxi6:armhf (2:1.7.2-1) ...
Setting up libxinerama1:armhf (2:1.1.3-1) ...
Setting up libxrandr2:armhf (2:1.4.1-1) ...
Setting up shared-mime-info (1.0-1) ...
Setting up libgtk2.0-0:armhf (2.24.20-1) ...
Setting up openssl (1.0.1e-2+rpi1) ...
Setting up ca-certificates (20130610) ...
Setting up java-common (0.49) ...
Setting up tzdata-java (2013d-1) ...
Setting up liblcms2-2:armhf (2.2+git20110628-2.2) ...
Setting up libnspr4:armhf (2:4.10-1) ...
Setting up libnss3:armhf (2:3.15.1-1) ...
Setting up libpcsclite1:armhf (1.8.8-4) ...
Setting up libgif4 (4.1.6-10) ...
Setting up x11-common (1:7.7+3) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:armhf (2:1.0.8-2) ...
Setting up libjson-c2:armhf (0.11-2) ...
Setting up libsm6:armhf (2:1.2.1-2) ...
Setting up libogg0:armhf (1.3.1-1) ...
Setting up libflac8:armhf (1.3.0-1) ...
Setting up libvorbis0a:armhf (1.3.2-1.3) ...
Setting up libvorbisenc2:armhf (1.3.2-1.3) ...
Setting up libsndfile1:armhf (1.0.25-7) ...
Setting up libx11-xcb1:armhf (2:1.6.1-1) ...
Setting up libxtst6:armhf (2:1.2.2-1) ...
Setting up libpulse0:armhf (4.0-6) ...
Setting up libdrm2:armhf (2.4.46-2) ...
Setting up libglapi-mesa:armhf (8.0.5-6+rpi1) ...
Setting up libxcb-glx0:armhf (1.9.1-3) ...
Setting up libxxf86vm1:armhf (1:1.1.3-1) ...
Setting up libgl1-mesa-glx:armhf (8.0.5-6+rpi1) ...
Setting up libcroco3:armhf (0.6.8-2) ...
Setting up libpython3.3-minimal (3.3.2-4+rpi2) ...
Setting up mime-support (3.54) ...
update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
Setting up libpython3.3-stdlib (3.3.2-4+rpi2) ...
Setting up libsigsegv2:armhf (2.10-2) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up python3.3-minimal (3.3.2-4+rpi2) ...
Setting up file (1:5.14-2) ...
Setting up gettext-base (0.18.3.1-1) ...
Setting up m4 (1.4.16-5) ...
Setting up libxml-commons-resolver1.1-java (1.2-7) ...
Setting up libxml-commons-external-java (1.4.01-2) ...
Setting up libxerces2-java (2.11.0-6) ...
Setting up autoconf (2.69-1.1) ...
Setting up autotools-dev (20130810.1) ...
Setting up automake (1:1.13.3-1.1) ...
update-alternatives: using /usr/bin/automake-1.13 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.18.3.1-1) ...
Setting up dctrl-tools (2.23) ...
Setting up gettext (0.18.3.1-1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20130720) ...
Setting up python3.3 (3.3.2-4+rpi2) ...
Setting up python3-minimal (3.3.2-15) ...
Setting up libpython3-stdlib:armhf (3.3.2-15) ...
Setting up libtool (2.4.2-1.3) ...
Setting up dh-autoreconf (9) ...
Setting up dh-linktree (0.3) ...
Setting up doxygen (1.8.4-1) ...
Setting up libarchive-zip-perl (1.30-7) ...
Setting up libjs-jquery (1.7.2+dfsg-3) ...
Setting up dh-python (1.20130819-1) ...
Setting up python3 (3.3.2-15) ...
Setting up devscripts (2.13.3) ...
Setting up javahelper (0.43) ...
Setting up openjdk-7-jre-headless:armhf (7u25-2.3.12-1+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up default-jre-headless (1:1.7-49) ...
Setting up openjdk-7-jre:armhf (7u25-2.3.12-1+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode
Setting up default-jre (1:1.7-49) ...
Setting up ant (1.9.1-1) ...
Setting up openjdk-7-jdk:armhf (7u25-2.3.12-1+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javah to provide /usr/bin/javah (javah) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode
Setting up default-jdk (1:1.7-49) ...
Setting up sbuild-build-depends-libhmsbeagle-dummy (0.invalid.0) ...
Setting up ca-certificates-java (20130815) ...
done.
Setting up openjdk-7-jre-lib (7u25-2.3.12-1+rpi1) ...
Setting up libatk-wrapper-java (0.30.4-4) ...
Setting up libatk-wrapper-java-jni:armhf (0.30.4-4) ...
Processing triggers for libc-bin ...
Processing triggers for ca-certificates ...
Updating certificates in /etc/ssl/certs... 157 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....
Adding debian:cacert.org_class3.pem
Adding debian:cacert.org_root.pem
Adding debian:A-Trust-nQual-03.pem
Adding debian:ACEDICOM_Root.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/AC_Ra?z_Certic?mara_S.A..pem. Message:
/etc/ssl/certs/AC_Ra?z_Certic?mara_S.A..pem (No such file or directory)
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:America_Online_Root_Certification_Authority_1.pem
Adding debian:America_Online_Root_Certification_Authority_2.pem
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_CA_1.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:Certigna.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/Certinomis_-_Autorit?_Racine.pem. Message:
/etc/ssl/certs/Certinomis_-_Autorit?_Racine.pem (No such file or directory)
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:Certum_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:ComSign_CA.pem
Adding debian:ComSign_Secured_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem
Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/EBG_Elektronik_Sertifika_Hizmet_Sa?lay?c?s?.pem. Message:
/etc/ssl/certs/EBG_Elektronik_Sertifika_Hizmet_Sa?lay?c?s?.pem (No such file or directory)
Adding debian:EC-ACC.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust.net_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Adding debian:Equifax_Secure_eBusiness_CA_2.pem
Adding debian:Firmaprofesional_Root_CA.pem
Adding debian:GTE_CyberTrust_Global_Root.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:IGC_A.pem
Adding debian:Izenpe.com.pem
Adding debian:Juur-SK.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem. Message:
/etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem (No such file or directory)
Adding debian:NetLock_Business_=Class_B=_Root.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:RSA_Root_Certificate_1.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:StartCom_Certification_Authority_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TC_TrustCenter_Class_2_CA_II.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:TC_TrustCenter_Universal_CA_I.pem
Adding debian:TC_TrustCenter_Universal_CA_III.pem
Adding debian:TDC_Internet_Root_CA.pem
Adding debian:TDC_OCES_Root_CA.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:Thawte_Premium_Server_CA.pem
Adding debian:Thawte_Server_CA.pem
Adding debian:Trustis_FPS_Root_CA.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/T?B?TAK_UEKAE_K?k_Sertifika_Hizmet_Sa?lay?c?s?_-_S?r?m_3.pem. Message:
/etc/ssl/certs/T?B?TAK_UEKAE_K?k_Sertifika_Hizmet_Sa?lay?c?s?_-_S?r?m_3.pem (No such file or directory)
Adding debian:UTN_DATACorp_SGC_Root_CA.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:ValiCert_Class_1_VA.pem
Adding debian:ValiCert_Class_2_VA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:Wells_Fargo_Root_CA.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:spi-cacert-2008.pem
done.
done.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.9.8-imx5 armhf (armv7l)
Toolchain package versions: binutils_2.23.52.20130612-1 dpkg-dev_1.16.10 g++-4.6_4.6.4-2+rpi1 gcc-4.6_4.6.4-2+rpi1 libc6-dev_2.17-7+rpi1 libstdc++6_4.8.1-6+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 linux-libc-dev_3.10.1-1+rpi1
Package versions: ant_1.9.1-1 apt_0.9.7.8+rpi1 autoconf_2.69-1.1 automake_1:1.13.3-1.1 autopoint_0.18.3.1-1 autotools-dev_20130810.1 base-files_7.2+rpi1 base-passwd_3.5.27 bash_4.2+dfsg-1 binutils_2.23.52.20130612-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 ca-certificates_20130610 ca-certificates-java_20130815 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2+rpi1 dash_0.5.7-3 dctrl-tools_2.23 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130720 debianutils_4.4 default-jdk_1:1.7-49 default-jre_1:1.7-49 default-jre-headless_1:1.7-49 devscripts_2.13.3 dh-autoreconf_9 dh-linktree_0.3 dh-python_1.20130819-1 diffutils_1:3.2-8 doxygen_1.8.4-1 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.8-1 e2fsprogs_1.42.8-1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-6 fontconfig_2.10.2-2 fontconfig-config_2.10.2-2 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2+rpi1 gcc_4:4.6.3-8 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-2+rpi1 gcc-4.6-base_4.6.4-2+rpi1 gcc-4.7-base_4.7.3-4+rpi1 gcc-4.8-base_4.8.1-6+rpi1 gettext_0.18.3.1-1 gettext-base_0.18.3.1-1 gnupg_1.4.14-1 gpgv_1.4.14-1 grep_2.14-3 groff-base_1.22.2-3 gzip_1.6-2 hostname_3.13 initramfs-tools_0.113 initscripts_2.88dsf-43 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 java-common_0.49 javahelper_0.43 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.52-1 libapt-pkg4.12_0.9.7.8+rpi1 libarchive-zip-perl_1.30-7 libasound2_1.0.27.1-2 libasound2-data_1.0.27.1-2 libasprintf0c2_0.18.3.1-1 libasyncns0_0.8-4 libatk-wrapper-java_0.30.4-4 libatk-wrapper-java-jni_0.30.4-4 libatk1.0-0_2.8.0-2 libatk1.0-data_2.8.0-2 libattr1_1:2.4.47-1 libavahi-client3_0.6.31-2 libavahi-common-data_0.6.31-2 libavahi-common3_0.6.31-2 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-5 libc-bin_2.17-7+rpi1 libc-dev-bin_2.17-7+rpi1 libc6_2.17-7+rpi1 libc6-dev_2.17-7+rpi1 libcairo2_1.12.14-4 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcomerr2_1.42.8-1 libcroco3_0.6.8-2 libcups2_1.6.3-1+rpi1 libdatrie1_0.2.6-2 libdb5.1_5.1.29-6 libdbus-1-3_1.6.12-1 libdpkg-perl_1.16.10 libdrm2_2.4.46-2 libexpat1_2.1.0-4 libffi6_3.0.13-4 libflac8_1.3.0-1 libfontconfig1_2.10.2-2 libfreetype6_2.4.9-1.1 libgc1c2_1:7.2d-5 libgcc1_1:4.8.1-6+rpi1 libgcrypt11_1.5.3-2 libgdbm3_1.8.3-12 libgdk-pixbuf2.0-0_2.28.2-1 libgdk-pixbuf2.0-common_2.28.2-1 libgif4_4.1.6-10 libgl1-mesa-glx_8.0.5-6+rpi1 libglapi-mesa_8.0.5-6+rpi1 libglib2.0-0_2.36.4-1 libgmp10_2:5.1.2+dfsg-2 libgnutls26_2.12.23-5 libgomp1_4.8.1-6+rpi1 libgpg-error0_1.10-3.1 libgraphite2-3_1.2.3-1 libgssapi-krb5-2_1.10.1+dfsg-6.1 libgtk2.0-0_2.24.20-1 libgtk2.0-common_2.24.20-1 libharfbuzz0a_0.9.19-1 libice6_2:1.0.8-2 libjasper1_1.900.1-14 libjbig0_2.0-2 libjpeg8_8d-1 libjs-jquery_1.7.2+dfsg-3 libjson-c2_0.11-2 libk5crypto3_1.10.1+dfsg-6.1 libkeyutils1_1.5.5-7 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 libkrb5-3_1.10.1+dfsg-6.1 libkrb5support0_1.10.1+dfsg-6.1 liblcms2-2_2.2+git20110628-2.2 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmount1_2.20.1-5.5 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libnspr4_2:4.10-1 libnss3_2:3.15.1-1 libogg0_1.3.1-1 libp11-kit0_0.18.4-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango-1.0-0_1.32.5-5 libpangocairo-1.0-0_1.32.5-5 libpangoft2-1.0-0_1.32.5-5 libpcre3_1:8.31-2 libpcsclite1_1.8.8-4 libpipeline1_1.2.4-1 libpixman-1-0_0.30.2-1 libpng12-0_1.2.49-4 libprocps0_1:3.3.4-2 libpulse0_4.0-6 libpython3-stdlib_3.3.2-15 libpython3.3-minimal_3.3.2-4+rpi2 libpython3.3-stdlib_3.3.2-4+rpi2 libreadline6_6.2+dfsg-0.1 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libsigsegv2_2.10-2 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libsndfile1_1.0.25-7 libsqlite3-0_3.7.17-1 libss2_1.42.8-1 libssl1.0.0_1.0.1e-2+rpi1 libstdc++6_4.8.1-6+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 libswitch-perl_2.16-2 libtasn1-3_2.14-3 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff4_3.9.7-1 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130608-1 libtool_2.4.2-1.3 libudev0_175-7.2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libvorbis0a_1.3.2-1.3 libvorbisenc2_1.3.2-1.3 libwrap0_7.6.q-24 libx11-6_2:1.6.1-1 libx11-data_2:1.6.1-1 libx11-xcb1_2:1.6.1-1 libxau6_1:1.0.8-1 libxcb-glx0_1.9.1-3 libxcb-render0_1.9.1-3 libxcb-shm0_1.9.1-3 libxcb1_1.9.1-3 libxcomposite1_1:0.4.4-1 libxcursor1_1:1.1.14-1 libxdamage1_1:1.1.4-1 libxdmcp6_1:1.1.1-1 libxerces2-java_2.11.0-6 libxext6_2:1.3.2-1 libxfixes3_1:5.0.1-1 libxi6_2:1.7.2-1 libxinerama1_2:1.1.3-1 libxml-commons-external-java_1.4.01-2 libxml-commons-resolver1.1-java_1.2-7 libxml2_2.9.1+dfsg1-3 libxrandr2_2:1.4.1-1 libxrender1_1:0.9.8-1 libxtst6_2:1.2.2-1 libxxf86vm1_1:1.1.3-1 linux-libc-dev_3.10.1-1+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1 m4_1.4.16-5 make_3.81-8.2 makedev_2.3.1-93 man-db_2.6.5-2 mawk_1.3.3-17 mime-support_3.54 mount_2.20.1-5.5 multiarch-support_2.17-7+rpi1 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 openjdk-7-jdk_7u25-2.3.12-1+rpi1 openjdk-7-jre_7u25-2.3.12-1+rpi1 openjdk-7-jre-headless_7u25-2.3.12-1+rpi1 openjdk-7-jre-lib_7u25-2.3.12-1+rpi1 openssl_1.0.1e-2+rpi1 passwd_1:4.1.5.1-1 patch_2.7.1-3 perl_5.14.2-21+rpi1 perl-base_5.14.2-21+rpi1 perl-modules_5.14.2-21+rpi1 plymouth_0.8.8-6+deb8u1 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 python3_3.3.2-15 python3-minimal_3.3.2-15 python3.3_3.3.2-4+rpi2 python3.3-minimal_3.3.2-4+rpi2 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libhmsbeagle-dummy_0.invalid.0 sed_4.2.2-2 sensible-utils_0.0.9 shared-mime-info_1.0-1 sysv-rc_2.88dsf-43 sysvinit_2.88dsf-43 sysvinit-utils_2.88dsf-43 tar_1.26+dfsg-8 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013d-1 tzdata-java_2013d-1 ucf_3.0027+nmu1 udev_175-7.2 util-linux_2.20.1-5.5 x11-common_1:7.7+3 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Aug 23 12:24:59 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./libhmsbeagle_1.1r1092-2.dsc
dpkg-source: info: extracting libhmsbeagle in libhmsbeagle-1.1r1092
dpkg-source: info: unpacking libhmsbeagle_1.1r1092.orig.tar.xz
dpkg-source: info: unpacking libhmsbeagle_1.1r1092-2.debian.tar.gz
dpkg-source: info: applying enable_static.patch
dpkg-source: info: applying gcc-4.7.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=POSIX
LOGNAME=root
LS_OPTIONS=--color=auto
MAIL=/var/mail/root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-2985b75c-ab27-4071-b5bd-2bfaabe3f23e
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=192.168.1.2 39053 22
SSH_CONNECTION=192.168.1.2 39053 192.168.1.45 22
SSH_TTY=/dev/pts/0
TERM=xterm
USER=root
XDG_SESSION_COOKIE=106ef489ba27ee071ab233f6518d3bce-1377988361.546213-1670383283
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package libhmsbeagle
dpkg-buildpackage: source version 1.1r1092-2
dpkg-source --before-build libhmsbeagle-1.1r1092
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with autoreconf --with javahelper
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory `/«PKGBUILDDIR»'
/usr/bin/make -f Makefile distclean || true
make[2]: Entering directory `/«PKGBUILDDIR»'
make[2]: Makefile: No such file or directory
make[2]: *** No rule to make target `Makefile'. Stop.
make[2]: Leaving directory `/«PKGBUILDDIR»'
rm -rf doc .config configure
rm -rf lib build
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_autoreconf_clean
jh_clean
dh_clean
debian/rules build-arch
dh build-arch --with autoreconf --with javahelper
dh_testdir -a
dh_autoreconf -a
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.config'.
libtoolize: copying file `.config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
libtoolize: copying file `m4/libtool.m4'
libtoolize: copying file `m4/ltoptions.m4'
libtoolize: copying file `m4/ltsugar.m4'
libtoolize: copying file `m4/ltversion.m4'
libtoolize: copying file `m4/lt~obsolete.m4'
configure.ac:56: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.ac:56: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.ac:64: installing '.config/config.guess'
configure.ac:64: installing '.config/config.sub'
configure.ac:56: installing '.config/install-sh'
configure.ac:56: installing '.config/missing'
Makefile.am: installing './INSTALL'
examples/complextest/Makefile.am: installing '.config/depcomp'
parallel-tests: installing '.config/test-driver'
libhmsbeagle/GPU/kernels/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
debian/rules override_dh_auto_configure
make[1]: Entering directory `/«PKGBUILDDIR»'
./autogen.sh
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.config'.
libtoolize: copying file `.config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
libtoolize: copying file `m4/libtool.m4'
libtoolize: copying file `m4/ltoptions.m4'
libtoolize: copying file `m4/ltsugar.m4'
libtoolize: copying file `m4/ltversion.m4'
libtoolize: copying file `m4/lt~obsolete.m4'
configure.ac:56: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.ac:56: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
libhmsbeagle/GPU/kernels/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
dh_auto_configure -- --enable-doxygen-man --enable-march-native=no --enable-sse=no
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking whether ln -s works... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
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checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 805306365
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
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checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
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checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
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checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for library containing lt_dlinit... no
checking for library containing dlopen... -ldl
checking if gcc accepts -dumpversion option... yes
checking gcc version... 4.6
checking for /usr/local/cuda/... no
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checking for /usr/local/cuda/lib... no
checking for nvcc... no
checking for javac... javac
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checking for dot... no
configure: WARNING: dot not found - will not generate graphics for doxygen documentation
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating hmsbeagle-1.pc
config.status: creating libhmsbeagle/Makefile
config.status: creating libhmsbeagle/GPU/Makefile
config.status: creating libhmsbeagle/GPU/kernels/Makefile
config.status: creating libhmsbeagle/CPU/Makefile
config.status: creating libhmsbeagle/plugin/Makefile
config.status: creating examples/Makefile
config.status: creating examples/tinytest/Makefile
config.status: creating examples/complextest/Makefile
config.status: creating examples/oddstatetest/Makefile
config.status: creating examples/fourtaxon/Makefile
config.status: creating examples/genomictest/Makefile
config.status: creating examples/matrixtest/Makefile
config.status: creating libhmsbeagle/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
configure: WARNING: NVIDIA CUDA nvcc compiler not found. CUDA support will not be built. Check the path to CUDA and specify --with-cuda=/path/to/cuda
make[1]: Leaving directory `/«PKGBUILDDIR»'
jh_linkjars -a
debian/rules override_dh_auto_build
make[1]: Entering directory `/«PKGBUILDDIR»'
/usr/bin/make
make[2]: Entering directory `/«PKGBUILDDIR»'
Making all in libhmsbeagle
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
/usr/bin/make all-recursive
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
Making all in GPU
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
Making all in kernels
make[6]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
/usr/bin/make all-am
make[7]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[7]: Nothing to be done for `all-am'.
make[7]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[6]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[6]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[6]: Nothing to be done for `all-am'.
make[6]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
Making all in CPU
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/«PKGBUILDDIR» -I/«PKGBUILDDIR» -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c -o libhmsbeagle_cpu_la-BeagleCPUPlugin.lo `test -f 'BeagleCPUPlugin.cpp' || echo './'`BeagleCPUPlugin.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/«PKGBUILDDIR» -I/«PKGBUILDDIR» -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c BeagleCPUPlugin.cpp -fPIC -DPIC -o .libs/libhmsbeagle_cpu_la-BeagleCPUPlugin.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/«PKGBUILDDIR» -I/«PKGBUILDDIR» -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c BeagleCPUPlugin.cpp -o libhmsbeagle_cpu_la-BeagleCPUPlugin.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -version-info 1:1:0 -o libhmsbeagle-cpu.la -rpath /usr/lib/arm-linux-gnueabihf libhmsbeagle_cpu_la-BeagleCPUPlugin.lo -ldl
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/4.6/crtbeginS.o .libs/libhmsbeagle_cpu_la-BeagleCPUPlugin.o -ldl -L/usr/lib/gcc/arm-linux-gnueabihf/4.6 -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/4.6/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf/crtn.o -O2 -Wl,-soname -Wl,libhmsbeagle-cpu.so.1 -o .libs/libhmsbeagle-cpu.so.1.0.1
libtool: link: (cd ".libs" && rm -f "libhmsbeagle-cpu.so.1" && ln -s "libhmsbeagle-cpu.so.1.0.1" "libhmsbeagle-cpu.so.1")
libtool: link: (cd ".libs" && rm -f "libhmsbeagle-cpu.so" && ln -s "libhmsbeagle-cpu.so.1.0.1" "libhmsbeagle-cpu.so")
libtool: link: ar cru .libs/libhmsbeagle-cpu.a libhmsbeagle_cpu_la-BeagleCPUPlugin.o
libtool: link: ranlib .libs/libhmsbeagle-cpu.a
libtool: link: ( cd ".libs" && rm -f "libhmsbeagle-cpu.la" && ln -s "../libhmsbeagle-cpu.la" "libhmsbeagle-cpu.la" )
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
Making all in plugin
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c -o libplugin_la-Plugin.lo `test -f 'Plugin.cpp' || echo './'`Plugin.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c Plugin.cpp -fPIC -DPIC -o .libs/libplugin_la-Plugin.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c Plugin.cpp -o libplugin_la-Plugin.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c -o libplugin_la-UnixSharedLibrary.lo `test -f 'UnixSharedLibrary.cpp' || echo './'`UnixSharedLibrary.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c UnixSharedLibrary.cpp -fPIC -DPIC -o .libs/libplugin_la-UnixSharedLibrary.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c UnixSharedLibrary.cpp -o libplugin_la-UnixSharedLibrary.o >/dev/null 2>&1
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -o libplugin.la libplugin_la-Plugin.lo libplugin_la-UnixSharedLibrary.lo -ldl
libtool: link: ar cru .libs/libplugin.a .libs/libplugin_la-Plugin.o .libs/libplugin_la-UnixSharedLibrary.o
libtool: link: ranlib .libs/libplugin.a
libtool: link: ( cd ".libs" && rm -f "libplugin.la" && ln -s "../libplugin.la" "libplugin.la" )
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c -o libhmsbeagle_la-beagle.lo `test -f 'beagle.cpp' || echo './'`beagle.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c beagle.cpp -fPIC -DPIC -o .libs/libhmsbeagle_la-beagle.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c beagle.cpp -o libhmsbeagle_la-beagle.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -version-info 1:1:0 -o libhmsbeagle.la -rpath /usr/lib/arm-linux-gnueabihf libhmsbeagle_la-beagle.lo plugin/libplugin.la -ldl
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/4.6/crtbeginS.o .libs/libhmsbeagle_la-beagle.o -Wl,--whole-archive plugin/.libs/libplugin.a -Wl,--no-whole-archive -ldl -L/usr/lib/gcc/arm-linux-gnueabihf/4.6 -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/4.6/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf/crtn.o -O2 -Wl,-soname -Wl,libhmsbeagle.so.1 -o .libs/libhmsbeagle.so.1.0.1
libtool: link: (cd ".libs" && rm -f "libhmsbeagle.so.1" && ln -s "libhmsbeagle.so.1.0.1" "libhmsbeagle.so.1")
libtool: link: (cd ".libs" && rm -f "libhmsbeagle.so" && ln -s "libhmsbeagle.so.1.0.1" "libhmsbeagle.so")
libtool: link: (cd .libs/libhmsbeagle.lax/libplugin.a && ar x "/«PKGBUILDDIR»/libhmsbeagle/plugin/.libs/libplugin.a")
libtool: link: ar cru .libs/libhmsbeagle.a libhmsbeagle_la-beagle.o .libs/libhmsbeagle.lax/libplugin.a/libplugin_la-Plugin.o .libs/libhmsbeagle.lax/libplugin.a/libplugin_la-UnixSharedLibrary.o
libtool: link: ranlib .libs/libhmsbeagle.a
libtool: link: rm -fr .libs/libhmsbeagle.lax
libtool: link: ( cd ".libs" && rm -f "libhmsbeagle.la" && ln -s "../libhmsbeagle.la" "libhmsbeagle.la" )
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c -o libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo `test -f 'JNI/beagle_BeagleJNIWrapper.cpp' || echo './'`JNI/beagle_BeagleJNIWrapper.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c JNI/beagle_BeagleJNIWrapper.cpp -fPIC -DPIC -o .libs/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c JNI/beagle_BeagleJNIWrapper.cpp -o libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -module -avoid-version -o libhmsbeagle-jni.la -rpath /usr/lib/arm-linux-gnueabihf libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo -lhmsbeagle -ldl
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/4.6/crtbeginS.o .libs/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o -Wl,-rpath -Wl,/«PKGBUILDDIR»/libhmsbeagle/.libs /«PKGBUILDDIR»/libhmsbeagle/.libs/libhmsbeagle.so -ldl -L/usr/lib/gcc/arm-linux-gnueabihf/4.6 -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/4.6/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf/crtn.o -O2 -Wl,-soname -Wl,libhmsbeagle-jni.so -o .libs/libhmsbeagle-jni.so
libtool: link: ar cru .libs/libhmsbeagle-jni.a libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o
libtool: link: ranlib .libs/libhmsbeagle-jni.a
libtool: link: ( cd ".libs" && rm -f "libhmsbeagle-jni.la" && ln -s "../libhmsbeagle-jni.la" "libhmsbeagle-jni.la" )
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
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Making all in examples
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Making all in genomictest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
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Making all in tinytest
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Making all in oddstatetest
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Making all in complextest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
make[4]: Nothing to be done for `all'.
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Making all in fourtaxon
make[4]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
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make[4]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
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make[4]: Entering directory `/«PKGBUILDDIR»/examples'
make[4]: Nothing to be done for `all-am'.
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make[3]: Entering directory `/«PKGBUILDDIR»'
make[3]: Nothing to be done for `all-am'.
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make[2]: Leaving directory `/«PKGBUILDDIR»'
/usr/bin/make doxygen-doc
make[2]: Entering directory `/«PKGBUILDDIR»'
rm -rf doc
SRCDIR='.' PROJECT='libhmsbeagle' DOCDIR='doc' VERSION='1.0.0' PERL_PATH='/usr/bin/perl' HAVE_DOT='NO' GENERATE_MAN='YES' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='NO' /usr/bin/doxygen ./beagle.dox
Warning: Tag `SYMBOL_CACHE_SIZE' at line 320 of file ./beagle.dox has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
Warning: Tag `SHOW_DIRECTORIES' at line 529 of file ./beagle.dox has become obsolete.
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Warning: Tag `HTML_ALIGN_MEMBERS' at line 921 of file ./beagle.dox has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
Warning: Tag `USE_INLINE_TREES' at line 1108 of file ./beagle.dox has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
Notice: Output directory `doc' does not exist. I have created it for you.
Searching for include files...
Searching for example files...
Searching for images...
Searching for dot files...
Searching for msc files...
Searching for files to exclude
Searching for files to process...
Searching for files in directory /«PKGBUILDDIR»/libhmsbeagle
Reading and parsing tag files
Parsing files
Preprocessing /«PKGBUILDDIR»/libhmsbeagle/beagle.h...
Parsing file /«PKGBUILDDIR»/libhmsbeagle/beagle.h...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Associating documentation with classes...
Computing nesting relations for classes...
Building example list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Creating members for template instances...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Sorting lists...
Freeing entry tree
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Computing dependencies between directories...
Generating citations page...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Generating style sheet...
Generating search indices...
Generating example documentation...
Generating file sources...
Generating code for file libhmsbeagle/beagle.h...
Generating file documentation...
Generating docs for file libhmsbeagle/beagle.h...
Generating page documentation...
Generating group documentation...
Generating class documentation...
Generating docs for compound BeagleInstanceDetails...
Generating docs for compound BeagleOperation...
Generating docs for compound BeagleResource...
Generating docs for compound BeagleResourceList...
Generating namespace index...
Generating graph info page...
Generating directory documentation...
Generating index page...
Generating page index...
Generating module index...
Generating namespace index...
Generating namespace member index...
Generating annotated compound index...
Generating alphabetical compound index...
Generating hierarchical class index...
Generating member index...
Generating file index...
Generating file member index...
Generating example index...
finalizing index lists...
lookup cache used 90/65536 hits=131 misses=91
finished...
make[2]: Leaving directory `/«PKGBUILDDIR»'
ant
Buildfile: /«PKGBUILDDIR»/build.xml
init:
[mkdir] Created dir: /«PKGBUILDDIR»/build
[mkdir] Created dir: /«PKGBUILDDIR»/lib
compile:
[javac] /«PKGBUILDDIR»/build.xml:37: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 13 source files to /«PKGBUILDDIR»/build
[javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
[javac] 1 warning
dist:
[jar] Building jar: /«PKGBUILDDIR»/lib/beagle.jar
BUILD SUCCESSFUL
Total time: 9 seconds
make[1]: Leaving directory `/«PKGBUILDDIR»'
jh_build -a
dh_auto_test -a
make[1]: Entering directory `/«PKGBUILDDIR»'
Making check in libhmsbeagle
make[2]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
Making check in GPU
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
Making check in kernels
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make check-am
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[5]: Nothing to be done for `check-am'.
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[4]: Nothing to be done for `check-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
Making check in CPU
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
make[3]: Nothing to be done for `check'.
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
Making check in plugin
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[3]: Nothing to be done for `check'.
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
make[2]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
Making check in examples
make[2]: Entering directory `/«PKGBUILDDIR»/examples'
Making check in genomictest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
make genomictest genomictest.sh
make[4]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c -o genomictest.o genomictest.cpp
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c -o linalg.o linalg.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -o genomictest genomictest.o linalg.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -g -O2 -o .libs/genomictest genomictest.o linalg.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl
echo './genomictest' > genomictest.sh
echo './genomictest --states 64 --sites 100 --taxa 10' >> genomictest.sh
chmod +x genomictest.sh
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
make check-TESTS
make[4]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
make[5]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
PASS: genomictest.sh
make[6]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
============================================================================
Testsuite summary for libhmsbeagle 1.0.0
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
Making check in tinytest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
make tinytest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c -o tinytest.o tinytest.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -o tinytest tinytest.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -g -O2 -o .libs/tinytest tinytest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
make check-TESTS
make[4]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
make[5]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
PASS: tinytest
make[6]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
============================================================================
Testsuite summary for libhmsbeagle 1.0.0
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
Making check in oddstatetest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
make oddstatetest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c -o oddstatetest.o oddstatetest.cpp
oddstatetest.cpp: In function 'int main(int, const char**)':
oddstatetest.cpp:444:36: warning: passing NULL to non-pointer argument 1 of 'void runBeagle(int, int, int, int, bool, bool, int)' [-Wconversion-null]
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -o oddstatetest oddstatetest.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -g -O2 -o .libs/oddstatetest oddstatetest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
make check-TESTS
make[4]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
make[5]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
PASS: oddstatetest
make[6]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
============================================================================
Testsuite summary for libhmsbeagle 1.0.0
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
Making check in complextest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
make complextest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c -o complextest.o complextest.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -o complextest complextest.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -g -O2 -o .libs/complextest complextest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
make check-TESTS
make[4]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
make[5]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
PASS: complextest
make[6]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
============================================================================
Testsuite summary for libhmsbeagle 1.0.0
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
Making check in fourtaxon
make[3]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
make fourtaxon fourtaxonrun.sh
make[4]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c -o fourtaxon.o fourtaxon.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -o fourtaxon fourtaxon.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -g -O2 -o .libs/fourtaxon fourtaxon.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl
echo './fourtaxon --niters 4 --filename ./fourtaxon.dat' > fourtaxonrun.sh
chmod +x fourtaxonrun.sh
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
make check-TESTS
make[4]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
make[5]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
PASS: fourtaxonrun.sh
make[6]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
============================================================================
Testsuite summary for libhmsbeagle 1.0.0
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
Making check in matrixtest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
make matrixtest
make[4]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/usr/lib/jvm/java-7-openjdk-armhf/include -I/usr/lib/jvm/java-7-openjdk-armhf/include/linux -g -O2 -c -o matrixtest.o matrixtest.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -o matrixtest matrixtest.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -g -O2 -o .libs/matrixtest matrixtest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
make check-TESTS
make[4]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
make[5]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
PASS: matrixtest
make[6]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
============================================================================
Testsuite summary for libhmsbeagle 1.0.0
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
make[3]: Entering directory `/«PKGBUILDDIR»/examples'
make[3]: Nothing to be done for `check-am'.
make[3]: Leaving directory `/«PKGBUILDDIR»/examples'
make[2]: Leaving directory `/«PKGBUILDDIR»/examples'
make[2]: Entering directory `/«PKGBUILDDIR»'
make[2]: Nothing to be done for `check-am'.
make[2]: Leaving directory `/«PKGBUILDDIR»'
make[1]: Leaving directory `/«PKGBUILDDIR»'
fakeroot debian/rules binary-arch
dh binary-arch --with autoreconf --with javahelper
dh_testroot -a
dh_prep -a
dh_installdirs -a
dh_auto_install -a
make[1]: Entering directory `/«PKGBUILDDIR»'
Making install in libhmsbeagle
make[2]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
Making install in GPU
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
Making install in kernels
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make install-am
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[6]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[6]: Nothing to be done for `install-exec-am'.
make[6]: Nothing to be done for `install-data-am'.
make[6]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU/kernels'
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[5]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[5]: Nothing to be done for `install-data-am'.
make[5]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/GPU'
Making install in CPU
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ../../libtool --mode=install /usr/bin/install -c libhmsbeagle-cpu.la '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libhmsbeagle-cpu.so.1.0.1 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.so.1.0.1
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libhmsbeagle-cpu.so.1.0.1 libhmsbeagle-cpu.so.1 || { rm -f libhmsbeagle-cpu.so.1 && ln -s libhmsbeagle-cpu.so.1.0.1 libhmsbeagle-cpu.so.1; }; })
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libhmsbeagle-cpu.so.1.0.1 libhmsbeagle-cpu.so || { rm -f libhmsbeagle-cpu.so && ln -s libhmsbeagle-cpu.so.1.0.1 libhmsbeagle-cpu.so; }; })
libtool: install: /usr/bin/install -c .libs/libhmsbeagle-cpu.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.la
libtool: install: /usr/bin/install -c .libs/libhmsbeagle-cpu.a /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.a
libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.a
libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.a
libtool: install: warning: remember to run `libtool --finish /usr/lib/arm-linux-gnueabihf'
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/CPU'
Making install in plugin
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle/plugin'
make[3]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
make[4]: Entering directory `/«PKGBUILDDIR»/libhmsbeagle'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ../libtool --mode=install /usr/bin/install -c libhmsbeagle.la libhmsbeagle-jni.la '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libhmsbeagle.so.1.0.1 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle.so.1.0.1
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libhmsbeagle.so.1.0.1 libhmsbeagle.so.1 || { rm -f libhmsbeagle.so.1 && ln -s libhmsbeagle.so.1.0.1 libhmsbeagle.so.1; }; })
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libhmsbeagle.so.1.0.1 libhmsbeagle.so || { rm -f libhmsbeagle.so && ln -s libhmsbeagle.so.1.0.1 libhmsbeagle.so; }; })
libtool: install: /usr/bin/install -c .libs/libhmsbeagle.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle.la
libtool: install: warning: relinking `libhmsbeagle-jni.la'
libtool: install: (cd /«PKGBUILDDIR»/libhmsbeagle; /bin/bash /«PKGBUILDDIR»/libtool --tag CXX --mode=relink g++ -g -O2 -module -avoid-version -o libhmsbeagle-jni.la -rpath /usr/lib/arm-linux-gnueabihf libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo -lhmsbeagle -ldl -inst-prefix-dir /«PKGBUILDDIR»/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/4.6/crtbeginS.o .libs/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o -L/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lhmsbeagle -ldl -L/usr/lib/gcc/arm-linux-gnueabihf/4.6 -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/4.6/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf/crtn.o -O2 -Wl,-soname -Wl,libhmsbeagle-jni.so -o .libs/libhmsbeagle-jni.so
libtool: install: /usr/bin/install -c .libs/libhmsbeagle-jni.soT /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-jni.so
libtool: install: /usr/bin/install -c .libs/libhmsbeagle-jni.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-jni.la
libtool: install: /usr/bin/install -c .libs/libhmsbeagle.a /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle.a
libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle.a
libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle.a
libtool: install: /usr/bin/install -c .libs/libhmsbeagle-jni.a /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-jni.a
libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-jni.a
libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libhmsbeagle-jni.a
libtool: install: warning: remember to run `libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libhmsbeagle-1/libhmsbeagle'
/usr/bin/install -c -m 644 beagle.h platform.h '/«PKGBUILDDIR»/debian/tmp/usr/include/libhmsbeagle-1/libhmsbeagle'
make[4]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
make[3]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
make[2]: Leaving directory `/«PKGBUILDDIR»/libhmsbeagle'
Making install in examples
make[2]: Entering directory `/«PKGBUILDDIR»/examples'
Making install in genomictest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
make[4]: Entering directory `/«PKGBUILDDIR»/examples/genomictest'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/genomictest'
Making install in tinytest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
make[4]: Entering directory `/«PKGBUILDDIR»/examples/tinytest'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/tinytest'
Making install in oddstatetest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
make[4]: Entering directory `/«PKGBUILDDIR»/examples/oddstatetest'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/oddstatetest'
Making install in complextest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
make[4]: Entering directory `/«PKGBUILDDIR»/examples/complextest'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/complextest'
Making install in fourtaxon
make[3]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
make[4]: Entering directory `/«PKGBUILDDIR»/examples/fourtaxon'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/fourtaxon'
Making install in matrixtest
make[3]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
make[4]: Entering directory `/«PKGBUILDDIR»/examples/matrixtest'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples/matrixtest'
make[3]: Entering directory `/«PKGBUILDDIR»/examples'
make[4]: Entering directory `/«PKGBUILDDIR»/examples'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/examples'
make[3]: Leaving directory `/«PKGBUILDDIR»/examples'
make[2]: Leaving directory `/«PKGBUILDDIR»/examples'
make[2]: Entering directory `/«PKGBUILDDIR»'
make[3]: Entering directory `/«PKGBUILDDIR»'
make[3]: Nothing to be done for `install-exec-am'.
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 hmsbeagle-1.pc '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
make[3]: Leaving directory `/«PKGBUILDDIR»'
make[2]: Leaving directory `/«PKGBUILDDIR»'
make[1]: Leaving directory `/«PKGBUILDDIR»'
debian/rules override_dh_install
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_install
jniso=`find debian/libhmsbeagle1 -name libhmsbeagle-jni.so` ; \
mkdir -p `dirname $jniso`/jni ; \
mv $jniso `dirname $jniso`/jni
make[1]: Leaving directory `/«PKGBUILDDIR»'
jh_installjavadoc -a
debian/rules override_dh_installdocs
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_installdocs
find debian/libhmsbeagle-dev -name jquery.js -delete
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
jh_installlibs -a
jh_classpath -a
jh_manifest -a
jh_exec -a
jh_depends -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package libhmsbeagle-dev: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: Depends field of package libhmsbeagle-java: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package `libhmsbeagle-dev' in `../libhmsbeagle-dev_1.1r1092-2_armhf.deb'.
dpkg-deb: building package `libhmsbeagle1' in `../libhmsbeagle1_1.1r1092-2_armhf.deb'.
dpkg-deb: building package `libhmsbeagle-java' in `../libhmsbeagle-java_1.1r1092-2_armhf.deb'.
dpkg-genchanges -B -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../libhmsbeagle_1.1r1092-2_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build libhmsbeagle-1.1r1092
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20130903-0548
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
libhmsbeagle_1.1r1092-2_armhf.changes:
──────────────────────────────────────
Format: 1.8
Date: Fri, 23 Aug 2013 14:17:18 +0200
Source: libhmsbeagle
Binary: libhmsbeagle-dev libhmsbeagle1 libhmsbeagle-java
Architecture: armhf
Version: 1.1r1092-2
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libhmsbeagle-dev - High-performance lib for Bayesian and Maximum Likelihood phylogen
libhmsbeagle-java - High-performance lib for Bayesian and Maximum Likelihood phylogen
libhmsbeagle1 - High-performance lib for Bayesian and Maximum Likelihood phylogen
Closes: 720562
Changes:
libhmsbeagle (1.1r1092-2) unstable; urgency=low
.
* Upload to unstable because it
Closes: #720562
* debian/control:
- cme fix dpkg-control
- anonscm in Vcs fields
Checksums-Sha1:
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91825ba0769cd14086dfb8d8cf41461d939df7e4 64924 libhmsbeagle1_1.1r1092-2_armhf.deb
5e86de9dd45e6c9009e433ad22646c063b679cca 21538 libhmsbeagle-java_1.1r1092-2_armhf.deb
Checksums-Sha256:
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88d8d11c4209346e40d20ffcde1566c9ebb9bb622b9a47a8bc7bd6634dc78192 64924 libhmsbeagle1_1.1r1092-2_armhf.deb
dadf7bbc99d00a36fd9c7fdd5c7d50ca9e03eda00dac3f7ba6a6dad86c8b0ad7 21538 libhmsbeagle-java_1.1r1092-2_armhf.deb
Files:
ee4f77195e66fe1a9fcbb8a88578a57f 174922 libdevel optional libhmsbeagle-dev_1.1r1092-2_armhf.deb
2f5b3e09ba1be781b81fb194db56e51a 64924 libs optional libhmsbeagle1_1.1r1092-2_armhf.deb
698451673fa911a4087493cd49188756 21538 java optional libhmsbeagle-java_1.1r1092-2_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
libhmsbeagle-dev_1.1r1092-2_armhf.deb
─────────────────────────────────────
new debian package, version 2.0.
size 174922 bytes: control archive=3917 bytes.
1236 bytes, 26 lines control
10547 bytes, 120 lines md5sums
Package: libhmsbeagle-dev
Source: libhmsbeagle
Version: 1.1r1092-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 753
Depends: libhmsbeagle1 (= 1.1r1092-2)
Section: libdevel
Priority: optional
Homepage: http://code.google.com/p/beagle-lib
Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics (devel)
BEAGLE is a high-performance library that can perform the core calculations at
the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It
can make use of highly-parallel processors such as those in graphics cards
(GPUs) found in many PCs.
.
The project involves an open API and fast implementations of a library for
evaluating phylogenetic likelihoods (continuous time Markov processes) of
biomolecular sequence evolution.
.
The aim is to provide high performance evaluation 'services' to a wide range
of phylogenetic software, both Bayesian samplers and Maximum Likelihood
optimizers. This allows these packages to make use of implementations that
make use of optimized hardware such as graphics processing units.
.
This package contains development files needed to build against Beagle library.
drwxr-xr-x root/root 0 2013-09-03 05:47 ./
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/lib/
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 283 2013-09-03 05:47 ./usr/lib/arm-linux-gnueabihf/pkgconfig/hmsbeagle-1.pc
-rw-r--r-- root/root 233000 2013-09-03 05:47 ./usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.a
-rw-r--r-- root/root 50172 2013-09-03 05:47 ./usr/lib/arm-linux-gnueabihf/libhmsbeagle.a
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/include/
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/include/libhmsbeagle-1/
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/include/libhmsbeagle-1/libhmsbeagle/
-rw-r--r-- root/root 36023 2013-09-03 05:47 ./usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h
-rw-r--r-- root/root 1629 2013-09-03 05:47 ./usr/include/libhmsbeagle-1/libhmsbeagle/platform.h
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/share/
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/share/doc/libhmsbeagle-dev/
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/share/doc/libhmsbeagle-dev/html/
-rw-r--r-- root/root 1163 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/tabs.css
-rw-r--r-- root/root 2983 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/dynsections.js
-rw-r--r-- root/root 142 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/tab_a.png
-rw-r--r-- root/root 169 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/tab_b.png
-rw-r--r-- root/root 177 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/tab_h.png
-rw-r--r-- root/root 184 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/tab_s.png
-rw-r--r-- root/root 98 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/nav_h.png
-rw-r--r-- root/root 153 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/nav_f.png
-rw-r--r-- root/root 676 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/bc_s.png
-rw-r--r-- root/root 3779 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/doxygen.png
-rw-r--r-- root/root 132 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/closed.png
-rw-r--r-- root/root 123 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/open.png
-rw-r--r-- root/root 147 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/bdwn.png
-rw-r--r-- root/root 845 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/sync_on.png
-rw-r--r-- root/root 853 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/sync_off.png
-rw-r--r-- root/root 95 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/nav_g.png
-rw-r--r-- root/root 5902 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/beagle-dox.png
-rw-r--r-- root/root 86 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/ftv2blank.png
-rw-r--r-- root/root 746 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/ftv2doc.png
-rw-r--r-- root/root 616 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/ftv2folderclosed.png
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-rw-r--r-- root/root 746 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/ftv2link.png
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-rw-r--r-- root/root 86 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/ftv2node.png
-rw-r--r-- root/root 229 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/ftv2plastnode.png
-rw-r--r-- root/root 229 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/ftv2pnode.png
-rw-r--r-- root/root 86 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/ftv2vertline.png
-rw-r--r-- root/root 314 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/ftv2splitbar.png
-rw-r--r-- root/root 20509 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/doxygen.css
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/share/doc/libhmsbeagle-dev/html/search/
-rw-r--r-- root/root 563 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/search/mag_sel.png
-rw-r--r-- root/root 604 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/search/search_l.png
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-rw-r--r-- root/root 273 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/search/close.png
-rw-r--r-- root/root 4461 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/search/search.css
-rw-r--r-- root/root 1012 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/search/all_62.html
-rw-r--r-- root/root 10399 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/search/all_62.js
-rw-r--r-- root/root 1012 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/search/all_63.html
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-rw-r--r-- root/root 1018 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/search/functions_62.html
-rw-r--r-- root/root 3644 2013-09-03 05:46 ./usr/share/doc/libhmsbeagle-dev/html/search/functions_62.js
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lrwxrwxrwx root/root 0 2013-09-03 05:47 ./usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.so -> libhmsbeagle-cpu.so.1.0.1
libhmsbeagle1_1.1r1092-2_armhf.deb
──────────────────────────────────
new debian package, version 2.0.
size 64924 bytes: control archive=1209 bytes.
1197 bytes, 25 lines control
412 bytes, 5 lines md5sums
135 bytes, 7 lines * postinst #!/bin/sh
132 bytes, 7 lines * postrm #!/bin/sh
93 bytes, 3 lines shlibs
Package: libhmsbeagle1
Source: libhmsbeagle
Version: 1.1r1092-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 152
Pre-Depends: multiarch-support
Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.6)
Section: libs
Priority: optional
Homepage: http://code.google.com/p/beagle-lib
Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics
BEAGLE is a high-performance library that can perform the core calculations at
the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It
can make use of highly-parallel processors such as those in graphics cards
(GPUs) found in many PCs.
.
The project involves an open API and fast implementations of a library for
evaluating phylogenetic likelihoods (continuous time Markov processes) of
biomolecular sequence evolution.
.
The aim is to provide high performance evaluation 'services' to a wide range
of phylogenetic software, both Bayesian samplers and Maximum Likelihood
optimizers. This allows these packages to make use of implementations that
make use of optimized hardware such as graphics processing units.
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drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/share/doc/libhmsbeagle1/
-rw-r--r-- root/root 1262 2012-03-05 09:09 ./usr/share/doc/libhmsbeagle1/copyright
-rw-r--r-- root/root 1607 2013-08-23 12:19 ./usr/share/doc/libhmsbeagle1/changelog.Debian.gz
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lrwxrwxrwx root/root 0 2013-09-03 05:47 ./usr/lib/arm-linux-gnueabihf/libhmsbeagle-cpu.so.1 -> libhmsbeagle-cpu.so.1.0.1
libhmsbeagle-java_1.1r1092-2_armhf.deb
──────────────────────────────────────
new debian package, version 2.0.
size 21538 bytes: control archive=915 bytes.
1155 bytes, 25 lines control
231 bytes, 3 lines md5sums
Package: libhmsbeagle-java
Source: libhmsbeagle
Version: 1.1r1092-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 22
Section: java
Priority: optional
Homepage: http://code.google.com/p/beagle-lib
Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics (java)
BEAGLE is a high-performance library that can perform the core calculations at
the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It
can make use of highly-parallel processors such as those in graphics cards
(GPUs) found in many PCs.
.
The project involves an open API and fast implementations of a library for
evaluating phylogenetic likelihoods (continuous time Markov processes) of
biomolecular sequence evolution.
.
The aim is to provide high performance evaluation 'services' to a wide range
of phylogenetic software, both Bayesian samplers and Maximum Likelihood
optimizers. This allows these packages to make use of implementations that
make use of optimized hardware such as graphics processing units.
.
This package contains the Java interface.
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drwxr-xr-x root/root 0 2013-09-03 05:47 ./usr/share/doc/libhmsbeagle-java/
-rw-r--r-- root/root 1262 2012-03-05 09:09 ./usr/share/doc/libhmsbeagle-java/copyright
-rw-r--r-- root/root 1607 2013-08-23 12:19 ./usr/share/doc/libhmsbeagle-java/changelog.Debian.gz
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
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Purging /«BUILDDIR»
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 21096
Build-Time: 411
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 1222
Job: libhmsbeagle_1.1r1092-2
Machine Architecture: armhf
Package: libhmsbeagle
Package-Time: 1755
Source-Version: 1.1r1092-2
Space: 21096
Status: successful
Version: 1.1r1092-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20130903-0548
Build needed 00:29:15, 21096k disc space