libgenome →
1.3.1-6 →
armhf → 2014-04-20 11:02:50
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on bm-wb-01
╔══════════════════════════════════════════════════════════════════════════════╗
║ libgenome 1.3.1-6 (armhf) 20 Apr 2014 10:50 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: libgenome
Version: 1.3.1-6
Source Version: 1.3.1-6
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/libgenome-MkMN0m/libgenome-1.3.1' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/libgenome-MkMN0m' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-bc21b559-346b-48eb-8f90-4692152dcf9b' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7367 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8543 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
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Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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Checking available source versions...
Download source files with APT
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Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'libgenome' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/libgenome/trunk/
Need to get 419 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main libgenome 1.3.1-6 (dsc) [2089 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main libgenome 1.3.1-6 (tar) [413 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main libgenome 1.3.1-6 (diff) [4032 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-L1hOOC/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 40 not upgraded.
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Selecting previously unselected package sbuild-build-depends-core-dummy.
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Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), dh-autoreconf, d-shlibs
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), dh-autoreconf, d-shlibs
dpkg-deb: building package `sbuild-build-depends-libgenome-dummy' in `/«BUILDDIR»/resolver-f0eUeU/apt_archive/sbuild-build-depends-libgenome-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install libgenome build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper
dh-autoreconf file gettext gettext-base groff-base intltool-debian
libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1 libpipeline1
libsigsegv2 libtool libunistring0 libxml2 m4 man-db po-debconf
Suggested packages:
autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist
whois vacation dh-make gettext-doc groff libtool-doc automaken gfortran
fortran95-compiler gcj-jdk less www-browser libmail-box-perl
Recommended packages:
curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data
shared-mime-info libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper
dh-autoreconf file gettext gettext-base groff-base intltool-debian
libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1 libpipeline1
libsigsegv2 libtool libunistring0 libxml2 m4 man-db po-debconf
sbuild-build-depends-libgenome-dummy
0 upgraded, 27 newly installed, 0 to remove and 40 not upgraded.
Need to get 10.6 MB/10.6 MB of archives.
After this operation, 28.9 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.3.0-1 [21.1 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-5 [962 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.7.1-1 [964 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.2-1 [29.0 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.17-1 [225 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.1~rc1+r3.0.13-12 [17.6 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.40.0-2+rpi1 [2249 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libsigsegv2 armhf 2.10-2 [29.2 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.17-1 [55.3 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.2-1 [112 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main m4 armhf 1.4.17-3 [238 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main autoconf all 2.69-6 [340 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main autotools-dev all 20130810.1 [69.6 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main automake all 1:1.14.1-3 [725 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main autopoint all 0.18.3.2-1 [393 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main d-shlibs all 0.54 [15.8 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.2-1 [1137 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20140228 [691 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libtool armhf 2.4.2-1.7 [505 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main dh-autoreconf all 9 [15.5 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.3.0-1) ...
Setting up groff-base (1.22.2-5) ...
Setting up bsdmainutils (9.0.5) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.6.7.1-1) ...
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Setting up libxml2:armhf (2.9.1+dfsg1-3) ...
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Setting up libglib2.0-0:armhf (2.40.0-2+rpi1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-2) ...
Setting up libsigsegv2:armhf (2.10-2) ...
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Setting up gettext-base (0.18.3.2-1) ...
Setting up m4 (1.4.17-3) ...
Setting up autoconf (2.69-6) ...
Setting up autotools-dev (20130810.1) ...
Setting up automake (1:1.14.1-3) ...
update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.18.3.2-1) ...
Setting up d-shlibs (0.54) ...
Setting up gettext (0.18.3.2-1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
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Setting up libtool (2.4.2-1.7) ...
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Setting up sbuild-build-depends-libgenome-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.18-4) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.13-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.24-3 dpkg-dev_1.17.6+rpi1 g++-4.8_4.8.2-16 gcc-4.8_4.8.2-16 libc6-dev_2.18-4 libstdc++-4.8-dev_4.8.2-16 libstdc++6_4.8.2-16 linux-libc-dev_3.12.6-2+rpi1
Package versions: apt_0.9.15.4 autoconf_2.69-6 automake_1:1.14.1-3 autopoint_0.18.3.2-1 autotools-dev_20130810.1 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.24-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.6 build-essential_11.6 bzip2_1.0.6-5 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-16 d-shlibs_0.54 dash_0.5.7-4 debconf_1.5.52 debconf-i18n_1.5.52 debfoster_2.7-1.2 debhelper_9.20140228 debianutils_4.4 dh-autoreconf_9 diffutils_1:3.3-1 dpkg_1.17.6+rpi1 dpkg-dev_1.17.6+rpi1 e2fslibs_1.42.9-3 e2fsprogs_1.42.9-3 fakeroot_1.18.4-2 file_1:5.17-1 findutils_4.4.2-7 g++_4:4.8.2-2 g++-4.8_4.8.2-16 gcc_4:4.8.2-2 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-10+rpi1 gcc-4.8_4.8.2-16 gcc-4.8-base_4.8.2-16 gettext_0.18.3.2-1 gettext-base_0.18.3.2-1 gnupg_1.4.16-1.1 gpgv_1.4.16-1.1 grep_2.16-1 groff-base_1.22.2-5 gzip_1.6-3 hostname_3.15 initramfs-tools_0.115 initscripts_2.88dsf-51 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.2-1+rpi1 kmod_16-2 libacl1_2.2.52-1 libapt-pkg4.12_0.9.15.4 libasan0_4.8.2-16 libasprintf0c2_0.18.3.2-1 libatomic1_4.8.2-16 libattr1_1:2.4.47-1 libaudit-common_1:2.3.3-4 libaudit1_1:2.3.3-4 libblkid1_2.20.1-5.6 libbz2-1.0_1.0.6-5 libc-bin_2.18-4 libc-dev-bin_2.18-4 libc6_2.18-4 libc6-dev_2.18-4 libcap2_1:2.22-1.2 libcloog-isl4_0.18.2-1 libcomerr2_1.42.9-3 libcroco3_0.6.8-2 libdb5.1_5.1.29-6 libdb5.3_5.3.28-3 libdbus-1-3_1.8.0-1 libdpkg-perl_1.17.6+rpi1 libffi6_3.1~rc1+r3.0.13-12 libgc1c2_1:7.2d-6 libgcc-4.8-dev_4.8.2-16 libgcc1_1:4.8.2-16 libgdbm3_1.8.3-12 libglib2.0-0_2.40.0-2+rpi1 libgmp10_2:5.1.3+dfsg-1 libgomp1_4.8.2-16 libisl10_0.12.2-1 libklibc_2.0.2-1+rpi1 libkmod2_16-2 liblocale-gettext-perl_1.05-7+b3 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.17-1 libmount1_2.20.1-5.6 libmpc3_1.0.1-1 libmpfr4_3.1.2-1 libncurses5_5.9+20140118-1 libncursesw5_5.9+20140118-1 libpam-modules_1.1.8-2 libpam-modules-bin_1.1.8-2 libpam-runtime_1.1.8-2 libpam0g_1.1.8-2 libpcre3_1:8.31-2 libpipeline1_1.3.0-1 libprocps0_1:3.3.4-2 libprocps3_1:3.3.9-2 libreadline6_6.2+dfsg-0.1 libselinux1_2.2.2-1 libsemanage-common_2.2-1 libsemanage1_2.2-1 libsepol1_2.2-1 libsigsegv2_2.10-2 libslang2_2.2.4-16 libss2_1.42.9-3 libstdc++-4.8-dev_4.8.2-16 libstdc++6_4.8.2-16 libtext-charwidth-perl_0.04-7+b3 libtext-iconv-perl_1.7-5+b3 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-1 libtinfo5_5.9+20140118-1 libtool_2.4.2-1.7 libudev1_204-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.3 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.6 libxml2_2.9.1+dfsg1-3 linux-libc-dev_3.12.6-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12+rpi1 m4_1.4.17-3 make_3.81-8.3 makedev_2.3.1-93 man-db_2.6.7.1-1 mawk_1.3.3-17 mount_2.20.1-5.6 multiarch-support_2.18-4 nano_2.2.6-1 ncurses-base_5.9+20140118-1 ncurses-bin_5.9+20140118-1 passwd_1:4.1.5.1-1 patch_2.7.1-4 perl_5.18.2-2 perl-base_5.18.2-2 perl-modules_5.18.2-2 plymouth_0.8.8-6+deb8u3 po-debconf_1.0.16+nmu2 procps_1:3.3.9-2 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libgenome-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 sysv-rc_2.88dsf-51 sysvinit_2.88dsf-51 sysvinit-core_2.88dsf-51 sysvinit-utils_2.88dsf-51 tar_1.27.1-1 tzdata_2013i-1 udev_204-7 util-linux_2.20.1-5.6 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun Apr 13 20:31:45 2014 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./libgenome_1.3.1-6.dsc
dpkg-source: info: extracting libgenome in libgenome-1.3.1
dpkg-source: info: unpacking libgenome_1.3.1.orig.tar.gz
dpkg-source: info: unpacking libgenome_1.3.1-6.debian.tar.xz
Check disc space
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Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
COLUMNS=80
CONSOLE=/dev/console
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INIT_VERSION=sysvinit-2.88
LC_ALL=POSIX
LINES=24
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PREVLEVEL=N
PWD=/
RUNLEVEL=2
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-bc21b559-346b-48eb-8f90-4692152dcf9b
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
init=/sbin/init
previous=N
rootmnt=/root
runlevel=2
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package libgenome
dpkg-buildpackage: source version 1.3.1-6
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build libgenome-1.3.1
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with autoreconf
dh_testdir
dh_auto_clean
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch --with autoreconf
dh_testdir -a
dh_autoreconf -a
libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: putting macros in `m4'.
libtoolize: copying file `m4/libtool.m4'
libtoolize: copying file `m4/ltoptions.m4'
libtoolize: copying file `m4/ltsugar.m4'
libtoolize: copying file `m4/ltversion.m4'
libtoolize: copying file `m4/lt~obsolete.m4'
libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.ac and
libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree.
configure.ac:58: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.ac:58: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.ac:65: installing './compile'
libGenome/Makefile.am:44: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
dh_auto_configure -a
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking target system type... arm-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 805306365
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether ln -s works... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for ANSI C header files... (cached) yes
checking for OpenMP flag of C compiler... -fopenmp
checking for doxygen... no
configure: WARNING: doxygen not found - will not generate any doxygen documentation
checking for perl... /usr/bin/perl
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking whether time.h and sys/time.h may both be included... yes
checking whether gcc needs -traditional... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating libGenome/Makefile
config.status: creating libGenome-1.3.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
dh_auto_build -a
make[1]: Entering directory `/«PKGBUILDDIR»'
make all-recursive
make[2]: Entering directory `/«PKGBUILDDIR»'
Making all in libGenome
make[3]: Entering directory `/«PKGBUILDDIR»/libGenome'
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o gnFilter.lo gnFilter.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFilter.cpp -fPIC -DPIC -o .libs/gnFilter.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFilter.cpp -o gnFilter.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnCompare.cpp -fPIC -DPIC -o .libs/gnCompare.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnCompare.cpp -o gnCompare.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnTranslator.cpp -fPIC -DPIC -o .libs/gnTranslator.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnTranslator.cpp -o gnTranslator.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o gnSourceFactory.lo gnSourceFactory.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnSourceFactory.cpp -fPIC -DPIC -o .libs/gnSourceFactory.o
gnSourceFactory.cpp: In member function 'boolean genome::gnSourceFactory::PathExists(std::string) const':
gnSourceFactory.cpp:292:32: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
getcwd( folder, FILENAME_MAX );
^
gnSourceFactory.cpp:297:17: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result [-Wunused-result]
chdir( folder );
^
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnSourceFactory.cpp -o gnSourceFactory.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFeature.cpp -fPIC -DPIC -o .libs/gnFeature.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFeature.cpp -o gnFeature.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnSourceQualifier.cpp -fPIC -DPIC -o .libs/gnSourceQualifier.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnSourceQualifier.cpp -o gnSourceQualifier.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFileContig.cpp -fPIC -DPIC -o .libs/gnFileContig.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFileContig.cpp -o gnFileContig.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnSourceSpec.cpp -fPIC -DPIC -o .libs/gnSourceSpec.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnSourceSpec.cpp -o gnSourceSpec.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFileSource.cpp -fPIC -DPIC -o .libs/gnFileSource.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFileSource.cpp -o gnFileSource.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o gnFASSource.lo gnFASSource.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFASSource.cpp -fPIC -DPIC -o .libs/gnFASSource.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFASSource.cpp -o gnFASSource.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFragmentSpec.cpp -fPIC -DPIC -o .libs/gnFragmentSpec.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFragmentSpec.cpp -o gnFragmentSpec.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnStringSpec.cpp -fPIC -DPIC -o .libs/gnStringSpec.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnStringSpec.cpp -o gnStringSpec.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnGBKSource.cpp -fPIC -DPIC -o .libs/gnGBKSource.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnGBKSource.cpp -o gnGBKSource.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnStringTools.cpp -fPIC -DPIC -o .libs/gnStringTools.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnStringTools.cpp -o gnStringTools.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnGenomeSpec.cpp -fPIC -DPIC -o .libs/gnGenomeSpec.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnGenomeSpec.cpp -o gnGenomeSpec.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnLocation.cpp -fPIC -DPIC -o .libs/gnLocation.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnLocation.cpp -o gnLocation.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnRAWSource.cpp -fPIC -DPIC -o .libs/gnRAWSource.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnRAWSource.cpp -o gnRAWSource.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnBaseFeature.cpp -fPIC -DPIC -o .libs/gnBaseFeature.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnBaseFeature.cpp -o gnBaseFeature.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnSEQSource.cpp -fPIC -DPIC -o .libs/gnSEQSource.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnSEQSource.cpp -o gnSEQSource.o >/dev/null 2>&1
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnSequence.cpp -fPIC -DPIC -o .libs/gnSequence.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnSequence.cpp -o gnSequence.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o gnContigSpec.lo gnContigSpec.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnContigSpec.cpp -fPIC -DPIC -o .libs/gnContigSpec.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnContigSpec.cpp -o gnContigSpec.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o gnSourceHeader.lo gnSourceHeader.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnSourceHeader.cpp -fPIC -DPIC -o .libs/gnSourceHeader.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnSourceHeader.cpp -o gnSourceHeader.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o gnException.lo gnException.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnException.cpp -fPIC -DPIC -o .libs/gnException.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnException.cpp -o gnException.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o gnFastTranslator.lo gnFastTranslator.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFastTranslator.cpp -fPIC -DPIC -o .libs/gnFastTranslator.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnFastTranslator.cpp -o gnFastTranslator.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o gnPosSpecificTranslator.lo gnPosSpecificTranslator.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnPosSpecificTranslator.cpp -fPIC -DPIC -o .libs/gnPosSpecificTranslator.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnPosSpecificTranslator.cpp -o gnPosSpecificTranslator.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o gnDefs.lo gnDefs.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnDefs.cpp -fPIC -DPIC -o .libs/gnDefs.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c gnDefs.cpp -o gnDefs.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -version-info 1:3:1 -Wl,-z,relro -o libGenome-1.3.la -rpath /usr/lib/arm-linux-gnueabihf gnFilter.lo gnCompare.lo gnTranslator.lo gnSourceFactory.lo gnFeature.lo gnSourceQualifier.lo gnFileContig.lo gnSourceSpec.lo gnFileSource.lo gnFASSource.lo gnFragmentSpec.lo gnStringSpec.lo gnGBKSource.lo gnStringTools.lo gnGenomeSpec.lo gnLocation.lo gnRAWSource.lo gnBaseFeature.lo gnSEQSource.lo gnSequence.lo gnContigSpec.lo gnSourceHeader.lo gnException.lo gnFastTranslator.lo gnPosSpecificTranslator.lo gnDefs.lo
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/4.8/crtbeginS.o .libs/gnFilter.o .libs/gnCompare.o .libs/gnTranslator.o .libs/gnSourceFactory.o .libs/gnFeature.o .libs/gnSourceQualifier.o .libs/gnFileContig.o .libs/gnSourceSpec.o .libs/gnFileSource.o .libs/gnFASSource.o .libs/gnFragmentSpec.o .libs/gnStringSpec.o .libs/gnGBKSource.o .libs/gnStringTools.o .libs/gnGenomeSpec.o .libs/gnLocation.o .libs/gnRAWSource.o .libs/gnBaseFeature.o .libs/gnSEQSource.o .libs/gnSequence.o .libs/gnContigSpec.o .libs/gnSourceHeader.o .libs/gnException.o .libs/gnFastTranslator.o .libs/gnPosSpecificTranslator.o .libs/gnDefs.o -L/usr/lib/gcc/arm-linux-gnueabihf/4.8 -L/usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/4.8/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/4.8/../../../arm-linux-gnueabihf/crtn.o -fopenmp -O2 -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libGenome-1.3.so.0 -o .libs/libGenome-1.3.so.0.1.3
libtool: link: (cd ".libs" && rm -f "libGenome-1.3.so.0" && ln -s "libGenome-1.3.so.0.1.3" "libGenome-1.3.so.0")
libtool: link: (cd ".libs" && rm -f "libGenome-1.3.so" && ln -s "libGenome-1.3.so.0.1.3" "libGenome-1.3.so")
libtool: link: ar cru .libs/libGenome-1.3.a gnFilter.o gnCompare.o gnTranslator.o gnSourceFactory.o gnFeature.o gnSourceQualifier.o gnFileContig.o gnSourceSpec.o gnFileSource.o gnFASSource.o gnFragmentSpec.o gnStringSpec.o gnGBKSource.o gnStringTools.o gnGenomeSpec.o gnLocation.o gnRAWSource.o gnBaseFeature.o gnSEQSource.o gnSequence.o gnContigSpec.o gnSourceHeader.o gnException.o gnFastTranslator.o gnPosSpecificTranslator.o gnDefs.o
libtool: link: ranlib .libs/libGenome-1.3.a
libtool: link: ( cd ".libs" && rm -f "libGenome-1.3.la" && ln -s "../libGenome-1.3.la" "libGenome-1.3.la" )
make[3]: Leaving directory `/«PKGBUILDDIR»/libGenome'
make[3]: Entering directory `/«PKGBUILDDIR»'
make[3]: Leaving directory `/«PKGBUILDDIR»'
make[2]: Leaving directory `/«PKGBUILDDIR»'
make[1]: Leaving directory `/«PKGBUILDDIR»'
debian/rules override_dh_auto_test
make[1]: Entering directory `/«PKGBUILDDIR»'
echo 'Disable test since some header (gnDNXSource.h) seems to be missing.'
Disable test since some header (gnDNXSource.h) seems to be missing.
make[1]: Leaving directory `/«PKGBUILDDIR»'
fakeroot debian/rules binary-arch
dh binary-arch --with autoreconf
dh_testroot -a
dh_prep -a
dh_auto_install -a
make[1]: Entering directory `/«PKGBUILDDIR»'
Making install in libGenome
make[2]: Entering directory `/«PKGBUILDDIR»/libGenome'
make[3]: Entering directory `/«PKGBUILDDIR»/libGenome'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ../libtool --mode=install /usr/bin/install -c libGenome-1.3.la '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libGenome-1.3.so.0.1.3 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome-1.3.so.0.1.3
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libGenome-1.3.so.0.1.3 libGenome-1.3.so.0 || { rm -f libGenome-1.3.so.0 && ln -s libGenome-1.3.so.0.1.3 libGenome-1.3.so.0; }; })
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libGenome-1.3.so.0.1.3 libGenome-1.3.so || { rm -f libGenome-1.3.so && ln -s libGenome-1.3.so.0.1.3 libGenome-1.3.so; }; })
libtool: install: /usr/bin/install -c .libs/libGenome-1.3.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome-1.3.la
libtool: install: /usr/bin/install -c .libs/libGenome-1.3.a /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome-1.3.a
libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome-1.3.a
libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome-1.3.a
libtool: install: warning: remember to run `libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libGenome-1.3/libGenome'
/usr/bin/install -c -m 644 gnABISource.h gnDataBaseSource.h gnLocation.h gnSetup.h gnBaseFeature.h gnDebug.h gnMultiSpec.h gnSourceFactory.h gnBaseFilter.h gnDefs.h gnSourceHeader.h gnPosSpecificTranslator.h gnBaseHeader.h gnFASSource.h gnSourceQualifier.h gnBaseQualifier.h gnSourceSpec.h gnStringQualifier.h gnBaseSource.h gnFeature.h gnProteinSequence.h gnStringHeader.h gnBaseSpec.h gnFileContig.h gnRAWSource.h gnClone.h gnFileSource.h gnRNASequence.h gnStringSpec.h gnCompare.h gnFilter.h gnSEQSource.h gnStringTools.h gnContigSpec.h gnFragmentSpec.h gnTranslator.h gnDNASequence.h gnGBKSource.h gnVersion.h gnFastTranslator.h '/«PKGBUILDDIR»/debian/tmp/usr/include/libGenome-1.3/libGenome'
/usr/bin/install -c -m 644 gnGenomeSpec.h gnSequence.h gnException.h gnExceptionCode.h IntervalSequenceTree.h OmpGuard.h '/«PKGBUILDDIR»/debian/tmp/usr/include/libGenome-1.3/libGenome'
make[3]: Leaving directory `/«PKGBUILDDIR»/libGenome'
make[2]: Leaving directory `/«PKGBUILDDIR»/libGenome'
make[2]: Entering directory `/«PKGBUILDDIR»'
make[3]: Entering directory `/«PKGBUILDDIR»'
make[3]: Nothing to be done for `install-exec-am'.
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 libGenome-1.3.pc '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
make[3]: Leaving directory `/«PKGBUILDDIR»'
make[2]: Leaving directory `/«PKGBUILDDIR»'
make[1]: Leaving directory `/«PKGBUILDDIR»'
debian/rules override_dh_install
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_install
# Call d-shlibmove to comply with library packaging guide
# mv debian/tmp/usr/include/*/* debian/tmp/usr/include/
d-shlibmove --override s/libgomp1-dev/libgcc-4.8-dev/ \
--commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
--> libgcc-4.8-dev package exists.
set -e
install -d -m 755 debian/libgenome-1.3-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libgenome-1.3-0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome-1.3.a debian/libgenome-1.3-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome-1.3.so debian/libgenome-1.3-dev/usr/lib/arm-linux-gnueabihf
mv /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome-1.3.so.0 debian/libgenome-1.3-0/usr/lib/arm-linux-gnueabihf
mv /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome-1.3.so.0.1.3 debian/libgenome-1.3-0/usr/lib/arm-linux-gnueabihf
PKGDEV=libgenome-1.3-dev
PKGSHL=libgenome-1.3-0
install -d -m 755 debian/libgenome-1.3-dev/usr/include
mv debian/tmp/usr/include/libGenome-1.3 debian/libgenome-1.3-dev/usr/include
install -d -m 755 debian/libgenome-1.3-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgenome-1.3-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_installdocs -a
dh_installchangelogs -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package libgenome-1.3-0: unused substitution variable ${misc:Pre-Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package `libgenome-1.3-dev' in `../libgenome-1.3-dev_1.3.1-6_armhf.deb'.
dpkg-deb: building package `libgenome-1.3-0' in `../libgenome-1.3-0_1.3.1-6_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libgenome_1.3.1-6_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build libgenome-1.3.1
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20140420-1101
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
libgenome_1.3.1-6_armhf.changes:
────────────────────────────────
Format: 1.8
Date: Sun, 13 Apr 2014 21:39:18 +0200
Source: libgenome
Binary: libgenome-1.3-dev libgenome-1.3-0
Architecture: armhf
Version: 1.3.1-6
Distribution: jessie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libgenome-1.3-0 - toolkit for developing bioinformatic related software
libgenome-1.3-dev - toolkit for developing bioinformatic related software (devel)
Closes: 744609
Changes:
libgenome (1.3.1-6) unstable; urgency=medium
.
* use dh-autoreconf
Closes: #744609
* debian/rules: simplify d-shlibs call
Checksums-Sha1:
b625aa367de00b1cf280bedd5066de1bd1db75ff 155456 libgenome-1.3-dev_1.3.1-6_armhf.deb
4fdbfce70dfed03005028d6ee465e53233bc430a 90616 libgenome-1.3-0_1.3.1-6_armhf.deb
Checksums-Sha256:
7685c28cd5cea40ae426ae4c770178e0db983fb1dd6b5b3ac47653753d6c5997 155456 libgenome-1.3-dev_1.3.1-6_armhf.deb
60502ffb0cbbe09a8c9e317647fee0171d434192f89e1db7251927bcf0099be0 90616 libgenome-1.3-0_1.3.1-6_armhf.deb
Files:
3f684fbb9f351193199a7738d2390820 155456 libdevel optional libgenome-1.3-dev_1.3.1-6_armhf.deb
a9c9eff3d92b59e6e496066fb12765c5 90616 libs optional libgenome-1.3-0_1.3.1-6_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
libgenome-1.3-dev_1.3.1-6_armhf.deb
───────────────────────────────────
new debian package, version 2.0.
size 155456 bytes: control archive=2395 bytes.
1090 bytes, 27 lines control
4408 bytes, 52 lines md5sums
Package: libgenome-1.3-dev
Source: libgenome
Version: 1.3.1-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1017
Depends: libgenome-1.3-0 (= 1.3.1-6), libgcc-4.8-dev
Conflicts: libgenome-dev
Provides: libgenome-dev
Section: libdevel
Priority: optional
Homepage: http://asap.ahabs.wisc.edu/software/software-development-libraries/libgenome.html
Description: toolkit for developing bioinformatic related software (devel)
libGenome is a freely available toolkit for developing bioinformatic related
software in C++. It is intended to take the hassle out of performing common
tasks on genetic sequence and annotation data.
.
Among other things, libGenome can help you:
.
* Read and write Multi-FastA format files
* Read and write GenBank flat file database entries
* Append, chop, truncate, reverse, complement, translate, and otherwise
mangle sequence data
* Access annotation in GenBank flat files
.
This is the development package containing the statically linked
library and the header files.
drwxr-xr-x root/root 0 2014-04-20 11:01 ./
drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/
drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/lib/
drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 287 2014-04-20 11:01 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libGenome-1.3.pc
-rw-r--r-- root/root 810500 2014-04-20 11:01 ./usr/lib/arm-linux-gnueabihf/libGenome-1.3.a
drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/include/
drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/include/libGenome-1.3/
drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/
-rw-r--r-- root/root 2621 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnABISource.h
-rw-r--r-- root/root 1815 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnDataBaseSource.h
-rw-r--r-- root/root 11315 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnLocation.h
-rw-r--r-- root/root 2094 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnSetup.h
-rw-r--r-- root/root 11124 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnBaseFeature.h
-rw-r--r-- root/root 1559 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnDebug.h
-rw-r--r-- root/root 13275 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnMultiSpec.h
-rw-r--r-- root/root 7602 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnSourceFactory.h
-rw-r--r-- root/root 1939 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnBaseFilter.h
-rw-r--r-- root/root 6166 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnDefs.h
-rw-r--r-- root/root 3744 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnSourceHeader.h
-rw-r--r-- root/root 2346 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnPosSpecificTranslator.h
-rw-r--r-- root/root 1943 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnBaseHeader.h
-rw-r--r-- root/root 4847 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnFASSource.h
-rw-r--r-- root/root 3762 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnSourceQualifier.h
-rw-r--r-- root/root 1796 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnBaseQualifier.h
-rw-r--r-- root/root 3003 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnSourceSpec.h
-rw-r--r-- root/root 2945 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnStringQualifier.h
-rw-r--r-- root/root 5898 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnBaseSource.h
-rw-r--r-- root/root 1827 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnFeature.h
-rw-r--r-- root/root 4168 2014-04-20 11:01 ./usr/include/libGenome-1.3/libGenome/gnProteinSequence.h
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drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/share/doc/libgenome-1.3-dev/
-rw-r--r-- root/root 472 2013-11-07 12:44 ./usr/share/doc/libgenome-1.3-dev/README.Debian
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libgenome-1.3-0_1.3.1-6_armhf.deb
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new debian package, version 2.0.
size 90616 bytes: control archive=1215 bytes.
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398 bytes, 5 lines md5sums
135 bytes, 7 lines * postinst #!/bin/sh
132 bytes, 7 lines * postrm #!/bin/sh
32 bytes, 1 lines shlibs
Package: libgenome-1.3-0
Source: libgenome
Version: 1.3.1-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 331
Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libgomp1 (>= 4.2.1), libstdc++6 (>= 4.6)
Section: libs
Priority: optional
Homepage: http://asap.ahabs.wisc.edu/software/software-development-libraries/libgenome.html
Description: toolkit for developing bioinformatic related software
libGenome is a freely available toolkit for developing bioinformatic related
software in C++. It is intended to take the hassle out of performing common
tasks on genetic sequence and annotation data.
.
Among other things, libGenome can help you:
.
* Read and write Multi-FastA format files
* Read and write GenBank flat file database entries
* Append, chop, truncate, reverse, complement, translate, and otherwise
mangle sequence data
* Access annotation in GenBank flat files
.
This package contains the dynamic library.
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drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/
drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/lib/
drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 334532 2014-04-20 11:01 ./usr/lib/arm-linux-gnueabihf/libGenome-1.3.so.0.1.3
drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/share/
drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/share/doc/
drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/share/doc/libgenome-1.3-0/
-rw-r--r-- root/root 904 2013-11-07 13:03 ./usr/share/doc/libgenome-1.3-0/copyright
-rw-r--r-- root/root 1440 2014-04-13 19:49 ./usr/share/doc/libgenome-1.3-0/changelog.Debian.gz
-rw-r--r-- root/root 516 2007-07-19 05:50 ./usr/share/doc/libgenome-1.3-0/changelog.gz
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drwxr-xr-x root/root 0 2014-04-20 11:01 ./usr/share/lintian/overrides/
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
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Purging /«BUILDDIR»
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 34028
Build-Time: 475
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 164
Job: libgenome_1.3.1-6
Machine Architecture: armhf
Package: libgenome
Package-Time: 696
Source-Version: 1.3.1-6
Space: 34028
Status: successful
Version: 1.3.1-6
────────────────────────────────────────────────────────────────────────────────
Finished at 20140420-1101
Build needed 00:11:36, 34028k disc space