libfastahack →
1.0.0+dfsg-6 →
armhf → 2020-07-25 11:38:08
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| libfastahack 1.0.0+dfsg-6 (armhf) Sat, 25 Jul 2020 11:28:37 +0000 |
+==============================================================================+
Package: libfastahack
Version: 1.0.0+dfsg-6
Source Version: 1.0.0+dfsg-6
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-bbc75e3e-d65b-4cba-b4f8-79e9f6920047' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.7 MB in 26s (952 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libfastahack' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libfastahack.git
Please use:
git clone https://salsa.debian.org/med-team/libfastahack.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 18.2 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main libfastahack 1.0.0+dfsg-6 (dsc) [2185 B]
Get:2 http://172.17.0.1/private bullseye-staging/main libfastahack 1.0.0+dfsg-6 (tar) [9088 B]
Get:3 http://172.17.0.1/private bullseye-staging/main libfastahack 1.0.0+dfsg-6 (diff) [6976 B]
Fetched 18.2 kB in 0s (259 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libfastahack-BKMgh7/libfastahack-1.0.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libfastahack-BKMgh7' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ZWoihE/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ZWoihE/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ZWoihE/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZWoihE/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZWoihE/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZWoihE/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ZWoihE/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZWoihE/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2793 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 28 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZWoihE/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12307 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man
dpkg-deb: building package 'sbuild-build-depends-libfastahack-dummy' in '/<<BUILDDIR>>/resolver-ZWoihE/apt_archive/sbuild-build-depends-libfastahack-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libfastahack-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZWoihE/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZWoihE/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZWoihE/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ZWoihE/apt_archive ./ Sources [519 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZWoihE/apt_archive ./ Packages [598 B]
Fetched 2450 B in 1s (3025 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libfastahack build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dmsetup libargon2-1 libcryptsetup12 libdevmapper1.02.1 libjson-c4 libpam-cap
libssl1.1 netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev d-shlibs debhelper dh-autoreconf
dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man
intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl
libdisorder-dev libdisorder0 libelf1 libfile-stripnondeterminism-perl
libglib2.0-0 libicu67 liblocale-gettext-perl libmagic-mgc libmagic1
libmount1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0
libxml2 m4 man-db po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev d-shlibs debhelper dh-autoreconf
dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man
intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl
libdisorder-dev libdisorder0 libelf1 libfile-stripnondeterminism-perl
libglib2.0-0 libicu67 liblocale-gettext-perl libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sbuild-build-depends-libfastahack-dummy sensible-utils
The following packages will be upgraded:
libmount1
1 upgraded, 38 newly installed, 0 to remove and 27 not upgraded.
Need to get 18.9 MB of archives.
After this operation, 68.7 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZWoihE/apt_archive ./ sbuild-build-depends-libfastahack-dummy 0.invalid.0 [888 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf liblocale-gettext-perl armhf 1.07-4 [18.1 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libmount1 armhf 2.35.2-7 [190 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-3 [801 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf d-shlibs all 0.93 [17.7 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2 [187 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.4-1 [1159 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-3 [8287 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2 [1007 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.16 [181 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libdisorder0 armhf 0.0.2+git20130809.8062ee1-1 [4568 B]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libdisorder-dev armhf 0.0.2+git20130809.8062ee1-1 [4156 B]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libdisorder-dev:armhf (0.0.2+git20130809.8062ee1-1) ...
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Setting up automake (1:1.16.2-3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
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Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2) ...
Setting up sbuild-build-depends-libfastahack-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-8+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-14+rpi1 gcc-9_9.3.0-14+rpi1 libc6-dev_2.30-8+rpi1 libstdc++-9-dev_9.3.0-14+rpi1 libstdc++6_10.1.0-4+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.6 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8+rpi1 binutils-arm-linux-gnueabihf_2.34-8+rpi1 binutils-common_2.34-8+rpi1 bsdextrautils_2.35.2-6 bsdutils_1:2.35.2-6 build-essential_12.8 bzip2_1.0.8-3 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-14+rpi1 d-shlibs_0.93 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dmsetup_2:1.02.167-1+b2 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.2-6 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-14+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10.1.0-4+rpi1 gcc-9_9.3.0-14+rpi1 gcc-9-base_9.3.0-14+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.16 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libapt-pkg6.0_2.1.6 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2 libasan5_9.3.0-14+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.1.0-4+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-8+rpi1 libblkid1_2.35.2-6 libbz2-1.0_1.0.8-3 libc-bin_2.30-8+rpi1 libc-dev-bin_2.30-8+rpi1 libc6_2.30-8+rpi1 libc6-dev_2.30-8+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.36-1 libcap2-bin_1:2.36-1 libcc1-0_10.1.0-4+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libcryptsetup12_2:2.3.3-1 libctf-nobfd0_2.34-8+rpi1 libctf0_2.34-8+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.2 libdevmapper1.02.1_2:1.02.167-1+b2 libdisorder-dev_0.0.2+git20130809.8062ee1-1 libdisorder0_0.0.2+git20130809.8062ee1-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.2-6 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-9-dev_9.3.0-14+rpi1 libgcc-s1_10.1.0-4+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2 libgomp1_10.1.0-4+rpi1 libgpg-error0_1.38-2 libhogweed5_3.5.1+really3.5.1-2 libicu67_67.1-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjson-c4_0.13.1+dfsg-9 libksba8_1.4.0-2 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.2-7 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-2 libp11-kit0_0.23.20-1 libpam-cap_1:2.36-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libreadline7_7.0-5 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.2-6 libsqlite3-0_3.32.3-1 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-14+rpi1 libstdc++6_10.1.0-4+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.6-2+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_245.6-2+rpi1 libunistring2_0.9.10-4 libuuid1_2.35.2-6 libxml2_2.9.10+dfsg-5+b1 libzstd1_1.4.5+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.35.2-6 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libfastahack-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.35.2-6 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Jul 23 12:54:03 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libfastahack_1.0.0+dfsg-6.dsc
dpkg-source: info: extracting libfastahack in /<<BUILDDIR>>/libfastahack-1.0.0+dfsg
dpkg-source: info: unpacking libfastahack_1.0.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking libfastahack_1.0.0+dfsg-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying autoconf.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-bbc75e3e-d65b-4cba-b4f8-79e9f6920047
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libfastahack
dpkg-buildpackage: info: source version 1.0.0+dfsg-6
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
aclocal: warning: couldn't open directory 'config': No such file or directory
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'.
libtoolize: copying file 'config/libtool.m4'
libtoolize: copying file 'config/ltoptions.m4'
libtoolize: copying file 'config/ltsugar.m4'
libtoolize: copying file 'config/ltversion.m4'
libtoolize: copying file 'config/lt~obsolete.m4'
libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am.
configure.ac:30: installing 'config/compile'
configure.ac:30: installing 'config/config.guess'
configure.ac:30: installing 'config/config.sub'
configure.ac:18: installing 'config/install-sh'
configure.ac:18: installing 'config/missing'
Makefile.am: installing 'config/depcomp'
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '104' is supported by ustar format... yes
checking whether GID '109' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether ln -s works... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
./configure: line 11515: AX_CXXFLAGS: command not found
checking for ANSI C header files... (cached) yes
checking for stdlib.h... (cached) yes
checking whether make sets $(MAKE)... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating libfastahack.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
make all-am
make[2]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o FastaHack.o FastaHack.cpp
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfastahack_la-Fasta.lo `test -f 'Fasta.cpp' || echo './'`Fasta.cpp
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfastahack_la-split.lo `test -f 'split.cpp' || echo './'`split.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Fasta.cpp -fPIC -DPIC -o .libs/libfastahack_la-Fasta.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c split.cpp -fPIC -DPIC -o .libs/libfastahack_la-split.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c split.cpp -o libfastahack_la-split.o >/dev/null 2>&1
In file included from /usr/include/c++/9/map:60,
from Fasta.h:12,
from Fasta.cpp:9:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from Fasta.h:12,
from Fasta.cpp:9:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::string FastaReference::sequenceNameStartingWith(std::string)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from Fasta.h:15,
from Fasta.cpp:9:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const FastaIndexEntry&}; _Tp = FastaIndexEntry; _Alloc = std::allocator<FastaIndexEntry>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<FastaIndexEntry>::iterator' {aka '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<FastaIndexEntry>::iterator' {aka '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from Fasta.h:18,
from Fasta.cpp:9:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from Fasta.h:18,
from Fasta.cpp:9:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Distance = int; _Tp = FastaIndexEntry; _Compare = __gnu_cxx::__ops::_Iter_comp_val<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Distance = int; _Tp = FastaIndexEntry; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from Fasta.h:18,
from Fasta.cpp:9:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from Fasta.h:12,
from Fasta.cpp:9:
/usr/include/c++/9/bits/stl_map.h: In function 'std::ostream& operator<<(std::ostream&, FastaIndex&)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:67,
from Fasta.h:15,
from Fasta.cpp:9:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from Fasta.h:18,
from Fasta.cpp:9:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Fasta.cpp -o libfastahack_la-Fasta.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libfastahack.la -rpath /usr/lib/arm-linux-gnueabihf libfastahack_la-Fasta.lo libfastahack_la-split.lo
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/9/crtbeginS.o .libs/libfastahack_la-Fasta.o .libs/libfastahack_la-split.o -L/usr/lib/gcc/arm-linux-gnueabihf/9 -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/9/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libfastahack.so.0 -o .libs/libfastahack.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libfastahack.so.0" && ln -s "libfastahack.so.0.0.0" "libfastahack.so.0")
libtool: link: (cd ".libs" && rm -f "libfastahack.so" && ln -s "libfastahack.so.0.0.0" "libfastahack.so")
libtool: link: ar cr .libs/libfastahack.a libfastahack_la-Fasta.o libfastahack_la-split.o
libtool: link: ranlib .libs/libfastahack.a
libtool: link: ( cd ".libs" && rm -f "libfastahack.la" && ln -s "../libfastahack.la" "libfastahack.la" )
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o libfastahack.la -ldisorder
libtool: link: g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fastahack FastaHack.o ./.libs/libfastahack.so -ldisorder
make[2]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
./fastahack tests/correct.fasta 2>&1 | grep -v ERROR
index file tests/correct.fasta.fai not found, generating...
./fastahack tests/crlf.fasta 2>&1 | grep -v ERROR
index file tests/crlf.fasta.fai not found, generating...
./fastahack tests/embedded_newline.fasta 2>&1 | grep 'ERROR: embedded newline'
ERROR: embedded newline at line 20 within sequence 2
./fastahack tests/mismatched_lines.fasta 2>&1 | grep 'ERROR: mismatched line lengths'
ERROR: mismatched line lengths at line 27 within sequence 3
./fastahack tests/trailing_newlines.fasta 2>&1 | grep -v ERROR
index file tests/trailing_newlines.fasta.fai not found, generating...
rm tests/*.fai
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<BUILDDIR>>/libfastahack-1.0.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
make[2]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
/bin/mkdir -p '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libfastahack.la '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libfastahack.so.0.0.0 /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0
libtool: install: (cd /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libfastahack.so.0.0.0 libfastahack.so.0 || { rm -f libfastahack.so.0 && ln -s libfastahack.so.0.0.0 libfastahack.so.0; }; })
libtool: install: (cd /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libfastahack.so.0.0.0 libfastahack.so || { rm -f libfastahack.so && ln -s libfastahack.so.0.0.0 libfastahack.so; }; })
libtool: install: /usr/bin/install -c .libs/libfastahack.lai /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.la
libtool: install: /usr/bin/install -c .libs/libfastahack.a /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: install: chmod 644 /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: install: ranlib /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c fastahack '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin'
libtool: warning: 'libfastahack.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/fastahack /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin/fastahack
/bin/mkdir -p '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack'
/usr/bin/install -c -m 644 Fasta.h LargeFileSupport.h Region.h split.h '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack'
/bin/mkdir -p '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 libfastahack.pc '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
make[2]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
PKGDEV=libfastahack-dev
PKGSHL=libfastahack0
install -d -m 755 debian/libfastahack-dev/usr/include
mv debian/tmp/usr/include/fastahack debian/libfastahack-dev/usr/include
install -d -m 755 debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
find debian -name libfastahack.la -delete
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
help2man --no-discard-stderr --no-info --version-string=1.0.0+dfsg-6 \
--name="fastahack - indexing and extracting sequences and subsequences from FASTA files" \
./fastahack > debian/fastahack.1
dh_installman
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
debian/rules override_dh_makeshlibs
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
echo "Symbols file for architecture armhf is not provided"
Symbols file for architecture armhf is not provided
mkdir -p debian/hidesymbols
mv debian/*.symbols debian/hidesymbols
dh_makeshlibs
# restore original debian/ dir to enable building twice in a row
mv debian/hidesymbols/*.symbols debian
rmdir debian/hidesymbols
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libfastahack0/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0 found in none of the libraries
dpkg-shlibdeps: warning: debian/fastahack/usr/bin/fastahack contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/fastahack/usr/bin/fastahack was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libfastahack0' in '../libfastahack0_1.0.0+dfsg-6_armhf.deb'.
dpkg-deb: building package 'libfastahack-dev' in '../libfastahack-dev_1.0.0+dfsg-6_armhf.deb'.
dpkg-deb: building package 'fastahack-dbgsym' in '../fastahack-dbgsym_1.0.0+dfsg-6_armhf.deb'.
dpkg-deb: building package 'libfastahack0-dbgsym' in '../libfastahack0-dbgsym_1.0.0+dfsg-6_armhf.deb'.
dpkg-deb: building package 'fastahack' in '../fastahack_1.0.0+dfsg-6_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libfastahack_1.0.0+dfsg-6_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-07-25T11:37:59Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libfastahack_1.0.0+dfsg-6_armhf.changes:
----------------------------------------
Format: 1.8
Date: Thu, 23 Jul 2020 14:51:27 +0200
Source: libfastahack
Binary: fastahack fastahack-dbgsym libfastahack-dev libfastahack0 libfastahack0-dbgsym
Architecture: armhf
Version: 1.0.0+dfsg-6
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
fastahack - utility for indexing and sequence extraction from FASTA files
libfastahack-dev - library for indexing and sequence extraction from FASTA files (de
libfastahack0 - library for indexing and sequence extraction from FASTA files (li
Closes: 957438
Changes:
libfastahack (1.0.0+dfsg-6) unstable; urgency=medium
.
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Repository, Repository-Browse.
* Remove libfastahack.la from build to make dh_missing happy
* Update symbols for gcc-10
Closes: #957438
Checksums-Sha1:
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ad49af9496e28ee5627c87e4cd5b822006422e4c 23748 libfastahack-dev_1.0.0+dfsg-6_armhf.deb
2d6d0b4ffbea58d09d62ce4a40612919d8c63d48 222496 libfastahack0-dbgsym_1.0.0+dfsg-6_armhf.deb
13bca0e04fcac78a5762adcfee600dd5af69cd27 20276 libfastahack0_1.0.0+dfsg-6_armhf.deb
239c414973bfaf656bf23844e8c1a583df05c4ca 6621 libfastahack_1.0.0+dfsg-6_armhf.buildinfo
Checksums-Sha256:
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56be6f78a4cbdd2c45554db5bc13ffb2106d7f39715b91b6529d762ab847d58f 11544 fastahack_1.0.0+dfsg-6_armhf.deb
c2b875a6e14c491403dd82690fb17cc95dc239f246094b2899f71ee6f50311f8 23748 libfastahack-dev_1.0.0+dfsg-6_armhf.deb
985714e6e3051ece1360b6d3c183609af5c40ae094ab2b7fd02d57bb2114c2b3 222496 libfastahack0-dbgsym_1.0.0+dfsg-6_armhf.deb
18cb76baf6af715de14423198eeac7940d42426b0133e9536d2426df3d11fae9 20276 libfastahack0_1.0.0+dfsg-6_armhf.deb
4ffc21fad3bd3401ec92e84fd0d802b5c2d64c394fdf5bf22579108a021a50a0 6621 libfastahack_1.0.0+dfsg-6_armhf.buildinfo
Files:
b1071170096b44e6530d670d8cd015d7 81088 debug optional fastahack-dbgsym_1.0.0+dfsg-6_armhf.deb
35a0acfdc5ad11884c5d89cd87d74417 11544 science optional fastahack_1.0.0+dfsg-6_armhf.deb
beb616ab8ca0e42ddb4ead1f469b849d 23748 libdevel optional libfastahack-dev_1.0.0+dfsg-6_armhf.deb
883554f76d4d49035e842f807eaae9ae 222496 debug optional libfastahack0-dbgsym_1.0.0+dfsg-6_armhf.deb
30313681f865fa23287e9e6a48fd939c 20276 libs optional libfastahack0_1.0.0+dfsg-6_armhf.deb
accffe38080002826da1288af1e67a63 6621 science optional libfastahack_1.0.0+dfsg-6_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
fastahack-dbgsym_1.0.0+dfsg-6_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 81088 bytes: control archive=544 bytes.
390 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: fastahack-dbgsym
Source: libfastahack
Version: 1.0.0+dfsg-6
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 95
Depends: fastahack (= 1.0.0+dfsg-6)
Section: debug
Priority: optional
Description: debug symbols for fastahack
Build-Ids: 4bfc91b82237a62e4cc3c66575b144aef2a7866e
drwxr-xr-x root/root 0 2020-07-23 12:51 ./
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/debug/.build-id/4b/
-rw-r--r-- root/root 86352 2020-07-23 12:51 ./usr/lib/debug/.build-id/4b/fc91b82237a62e4cc3c66575b144aef2a7866e.debug
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-07-23 12:51 ./usr/share/doc/fastahack-dbgsym -> fastahack
fastahack_1.0.0+dfsg-6_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 11544 bytes: control archive=1104 bytes.
1354 bytes, 29 lines control
331 bytes, 5 lines md5sums
Package: fastahack
Source: libfastahack
Version: 1.0.0+dfsg-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 35
Depends: libc6 (>= 2.4), libdisorder0 (>= 0.0.2), libfastahack0 (>= 1.0.0+dfsg), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
Breaks: libfastahack0 (<< 1.0.0+dfsg-4)
Replaces: libfastahack0 (<< 1.0.0+dfsg-4)
Section: science
Priority: optional
Homepage: https://github.com/ekg/fastahack
Description: utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
drwxr-xr-x root/root 0 2020-07-23 12:51 ./
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/bin/
-rwxr-xr-x root/root 18024 2020-07-23 12:51 ./usr/bin/fastahack
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/doc/fastahack/
-rw-r--r-- root/root 2958 2019-09-04 06:16 ./usr/share/doc/fastahack/README
-rw-r--r-- root/root 1309 2020-07-23 12:51 ./usr/share/doc/fastahack/changelog.Debian.gz
-rw-r--r-- root/root 1448 2020-07-23 12:51 ./usr/share/doc/fastahack/copyright
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/man/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/man/man1/
-rw-r--r-- root/root 636 2020-07-23 12:51 ./usr/share/man/man1/fastahack.1.gz
libfastahack-dev_1.0.0+dfsg-6_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 23748 bytes: control archive=1200 bytes.
1308 bytes, 30 lines control
593 bytes, 8 lines md5sums
Package: libfastahack-dev
Source: libfastahack
Version: 1.0.0+dfsg-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 103
Depends: libfastahack0 (= 1.0.0+dfsg-6)
Section: libdevel
Priority: optional
Homepage: https://github.com/ekg/fastahack
Description: library for indexing and sequence extraction from FASTA files (devel)
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
.
This is the development package containing the statically linked
library and the header files.
drwxr-xr-x root/root 0 2020-07-23 12:51 ./
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/include/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/include/fastahack/
-rw-r--r-- root/root 2823 2020-07-23 12:51 ./usr/include/fastahack/Fasta.h
-rw-r--r-- root/root 412 2020-07-23 12:51 ./usr/include/fastahack/LargeFileSupport.h
-rw-r--r-- root/root 1609 2020-07-23 12:51 ./usr/include/fastahack/Region.h
-rw-r--r-- root/root 781 2020-07-23 12:51 ./usr/include/fastahack/split.h
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 79920 2020-07-23 12:51 ./usr/lib/arm-linux-gnueabihf/libfastahack.a
lrwxrwxrwx root/root 0 2020-07-23 12:51 ./usr/lib/arm-linux-gnueabihf/libfastahack.so -> libfastahack.so.0.0.0
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 264 2020-07-23 12:51 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libfastahack.pc
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/doc/libfastahack-dev/
-rw-r--r-- root/root 1309 2020-07-23 12:51 ./usr/share/doc/libfastahack-dev/changelog.Debian.gz
-rw-r--r-- root/root 1448 2020-07-23 12:51 ./usr/share/doc/libfastahack-dev/copyright
libfastahack0-dbgsym_1.0.0+dfsg-6_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 222496 bytes: control archive=544 bytes.
403 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libfastahack0-dbgsym
Source: libfastahack
Version: 1.0.0+dfsg-6
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 239
Depends: libfastahack0 (= 1.0.0+dfsg-6)
Section: debug
Priority: optional
Description: debug symbols for libfastahack0
Build-Ids: 4f7a79eb1c2507400595e4a1617890638156de53
drwxr-xr-x root/root 0 2020-07-23 12:51 ./
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/debug/.build-id/4f/
-rw-r--r-- root/root 233612 2020-07-23 12:51 ./usr/lib/debug/.build-id/4f/7a79eb1c2507400595e4a1617890638156de53.debug
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-07-23 12:51 ./usr/share/doc/libfastahack0-dbgsym -> libfastahack0
libfastahack0_1.0.0+dfsg-6_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 20276 bytes: control archive=1136 bytes.
1270 bytes, 29 lines control
238 bytes, 3 lines md5sums
45 bytes, 1 lines shlibs
65 bytes, 2 lines triggers
Package: libfastahack0
Source: libfastahack
Version: 1.0.0+dfsg-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 61
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
Section: libs
Priority: optional
Homepage: https://github.com/ekg/fastahack
Description: library for indexing and sequence extraction from FASTA files (lib)
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
.
This package contains the dynamic library.
drwxr-xr-x root/root 0 2020-07-23 12:51 ./
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2020-07-23 12:51 ./usr/lib/arm-linux-gnueabihf/libfastahack.so.0 -> libfastahack.so.0.0.0
-rw-r--r-- root/root 46440 2020-07-23 12:51 ./usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-07-23 12:51 ./usr/share/doc/libfastahack0/
-rw-r--r-- root/root 1309 2020-07-23 12:51 ./usr/share/doc/libfastahack0/changelog.Debian.gz
-rw-r--r-- root/root 1448 2020-07-23 12:51 ./usr/share/doc/libfastahack0/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 11032
Build-Time: 180
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 331
Job: libfastahack_1.0.0+dfsg-6
Machine Architecture: armhf
Package: libfastahack
Package-Time: 562
Source-Version: 1.0.0+dfsg-6
Space: 11032
Status: successful
Version: 1.0.0+dfsg-6
--------------------------------------------------------------------------------
Finished at 2020-07-25T11:37:59Z
Build needed 00:09:22, 11032k disc space