libfastahack →
1.0.0+dfsg-11 →
armhf → 2023-12-08 05:28:45
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| libfastahack 1.0.0+dfsg-11 (armhf) Fri, 08 Dec 2023 05:27:41 +0000 |
+==============================================================================+
Package: libfastahack
Version: 1.0.0+dfsg-11
Source Version: 1.0.0+dfsg-11
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-228044c9-23c9-4ce1-83a0-081dff371b2f' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/libfastahack-yCR05P/resolver-UbMgpT' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.3 MB in 5s (5455 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libfastahack' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libfastahack.git
Please use:
git clone https://salsa.debian.org/med-team/libfastahack.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 19.1 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main libfastahack 1.0.0+dfsg-11 (dsc) [2357 B]
Get:2 http://172.17.4.1/private trixie-staging/main libfastahack 1.0.0+dfsg-11 (tar) [9088 B]
Get:3 http://172.17.4.1/private trixie-staging/main libfastahack 1.0.0+dfsg-11 (diff) [7624 B]
Fetched 19.1 kB in 0s (337 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libfastahack-yCR05P/libfastahack-1.0.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libfastahack-yCR05P' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [654 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [686 B]
Fetched 1949 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils d-shlibs
debhelper dh-autoreconf dh-strip-nondeterminism dpkg-dev dwz file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libblkid1 libdebhelper-perl libdisorder-dev libdisorder0 libdpkg-perl
libelf1 libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1
libmount1 libpipeline1 libsmartcols1 libsub-override-perl libtool
libuchardet0 libuuid1 libxml2 m4 man-db mount po-debconf sensible-utils
util-linux
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make debian-keyring
gettext-doc libasprintf-dev libgettextpo-dev groff git bzr cryptsetup-bin
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser nfs-common libmail-box-perl dosfstools kbd util-linux-extra
util-linux-locales
Recommended packages:
libalgorithm-merge-perl curl | wget | lynx libfile-fcntllock-perl
libarchive-cpio-perl libltdl-dev uuid-runtime libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libdebhelper-perl
libdisorder-dev libdisorder0 libelf1 libfile-stripnondeterminism-perl
libicu72 libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy
sensible-utils
The following packages will be upgraded:
bsdutils dpkg-dev libblkid1 libdpkg-perl libmount1 libsmartcols1 libuuid1
mount util-linux
9 upgraded, 35 newly installed, 0 to remove and 57 not upgraded.
1 not fully installed or removed.
Need to get 20.2 MB/22.2 MB of archives.
After this operation, 71.1 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.2-6 [134 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.2-6 [86.5 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.2-6 [1110 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.2-6 [145 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.2-6 [167 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.2-6 [102 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.2-6 [28.1 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-6 [81.2 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf d-shlibs all 0.105 [10.7 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.8 [82.1 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.8 [956 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf help2man armhf 1.49.3 [198 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libdisorder0 armhf 0.0.2+git20130809.8062ee1-4 [4856 B]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libdisorder-dev armhf 0.0.2+git20130809.8062ee1-4 [4484 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 20.2 MB in 2s (8701 kB/s)
(Reading database ... 12577 files and directories currently installed.)
Preparing to unpack .../mount_2.39.2-6_armhf.deb ...
Unpacking mount (2.39.2-6) over (2.39.2-5) ...
Preparing to unpack .../bsdutils_1%3a2.39.2-6_armhf.deb ...
Unpacking bsdutils (1:2.39.2-6) over (1:2.39.2-5) ...
Setting up bsdutils (1:2.39.2-6) ...
(Reading database ... 12577 files and directories currently installed.)
Preparing to unpack .../util-linux_2.39.2-6_armhf.deb ...
Unpacking util-linux (2.39.2-6) over (2.39.2-5) ...
Setting up util-linux (2.39.2-6) ...
(Reading database ... 12577 files and directories currently installed.)
Preparing to unpack .../libblkid1_2.39.2-6_armhf.deb ...
Unpacking libblkid1:armhf (2.39.2-6) over (2.39.2-5) ...
Setting up libblkid1:armhf (2.39.2-6) ...
(Reading database ... 12577 files and directories currently installed.)
Preparing to unpack .../libmount1_2.39.2-6_armhf.deb ...
Unpacking libmount1:armhf (2.39.2-6) over (2.39.2-5) ...
Setting up libmount1:armhf (2.39.2-6) ...
(Reading database ... 12577 files and directories currently installed.)
Preparing to unpack .../libsmartcols1_2.39.2-6_armhf.deb ...
Unpacking libsmartcols1:armhf (2.39.2-6) over (2.39.2-5) ...
Setting up libsmartcols1:armhf (2.39.2-6) ...
(Reading database ... 12577 files and directories currently installed.)
Preparing to unpack .../libuuid1_2.39.2-6_armhf.deb ...
Unpacking libuuid1:armhf (2.39.2-6) over (2.39.2-5) ...
Setting up libuuid1:armhf (2.39.2-6) ...
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12577 files and directories currently installed.)
Preparing to unpack .../00-libuchardet0_0.0.8-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.8-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../01-groff-base_1.23.0-3_armhf.deb ...
Unpacking groff-base (1.23.0-3) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../02-bsdextrautils_2.39.2-6_armhf.deb ...
Unpacking bsdextrautils (2.39.2-6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../03-libpipeline1_1.5.7-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.12.0-1_armhf.deb ...
Unpacking man-db (2.12.0-1) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../05-sensible-utils_0.0.20_all.deb ...
Unpacking sensible-utils (0.0.20) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../06-libmagic-mgc_1%3a5.45-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.45-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../07-libmagic1_1%3a5.45-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.45-2) ...
Selecting previously unselected package file.
Preparing to unpack .../08-file_1%3a5.45-2_armhf.deb ...
Unpacking file (1:5.45-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../09-gettext-base_0.21-14_armhf.deb ...
Unpacking gettext-base (0.21-14) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ...
Unpacking m4 (1.4.19-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.21-14_all.deb ...
Unpacking autopoint (0.21-14) ...
Selecting previously unselected package d-shlibs.
Preparing to unpack .../15-d-shlibs_0.105_all.deb ...
Unpacking d-shlibs (0.105) ...
Preparing to unpack .../16-dpkg-dev_1.22.1+rpi1_all.deb ...
Unpacking dpkg-dev (1.22.1+rpi1) over (1.22.0+rpi1) ...
Preparing to unpack .../17-libdpkg-perl_1.22.1+rpi1_all.deb ...
Unpacking libdpkg-perl (1.22.1+rpi1) over (1.22.0+rpi1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../18-libdebhelper-perl_13.11.8_all.deb ...
Unpacking libdebhelper-perl (13.11.8) ...
Selecting previously unselected package libtool.
Preparing to unpack .../19-libtool_2.4.7-7_all.deb ...
Unpacking libtool (2.4.7-7) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../20-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../22-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../24-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../25-libelf1_0.188-2.1+rpi1_armhf.deb ...
Unpacking libelf1:armhf (0.188-2.1+rpi1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../26-dwz_0.15-1_armhf.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:armhf.
Preparing to unpack .../27-libicu72_72.1-4_armhf.deb ...
Unpacking libicu72:armhf (72.1-4) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../28-libxml2_2.9.14+dfsg-1.3_armhf.deb ...
Unpacking libxml2:armhf (2.9.14+dfsg-1.3) ...
Selecting previously unselected package gettext.
Preparing to unpack .../29-gettext_0.21-14_armhf.deb ...
Unpacking gettext (0.21-14) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../32-debhelper_13.11.8_all.deb ...
Unpacking debhelper (13.11.8) ...
Selecting previously unselected package help2man.
Preparing to unpack .../33-help2man_1.49.3_armhf.deb ...
Unpacking help2man (1.49.3) ...
Selecting previously unselected package libdisorder0:armhf.
Preparing to unpack .../34-libdisorder0_0.0.2+git20130809.8062ee1-4_armhf.deb ...
Unpacking libdisorder0:armhf (0.0.2+git20130809.8062ee1-4) ...
Selecting previously unselected package libdisorder-dev:armhf.
Preparing to unpack .../35-libdisorder-dev_0.0.2+git20130809.8062ee1-4_armhf.deb ...
Unpacking libdisorder-dev:armhf (0.0.2+git20130809.8062ee1-4) ...
Selecting previously unselected package sbuild-build-depends-main-dummy.
Preparing to unpack .../36-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libdisorder0:armhf (0.0.2+git20130809.8062ee1-4) ...
Setting up libicu72:armhf (72.1-4) ...
Setting up bsdextrautils (2.39.2-6) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.8) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up gettext-base (0.21-14) ...
Setting up m4 (1.4.19-4) ...
Setting up file (1:5.45-2) ...
Setting up help2man (1.49.3) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-14) ...
Setting up d-shlibs (0.105) ...
Setting up libdisorder-dev:armhf (0.0.2+git20130809.8062ee1-4) ...
Setting up libdpkg-perl (1.22.1+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up mount (2.39.2-6) ...
Setting up sensible-utils (0.0.20) ...
Setting up libuchardet0:armhf (0.0.8-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-14) ...
Setting up libtool (2.4.7-7) ...
Setting up dpkg-dev (1.22.1+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.12.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.11.8) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc-12_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-5+rpi1 libstdc++6_13.2.0-5+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.2 bash_5.2.15-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.2-6 bsdutils_1:2.39.2-6 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-10+rpi1 cpp-13_13.2.0-5+rpi1 d-shlibs_0.105 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.8 debianutils_5.14 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 gcc-13-base_13.2.0-5+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 help2man_1.49.3 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-5+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-5+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-6+rpi1 libblkid1_2.39.2-6 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcc1-0_13.2.0-5+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.271 libdebhelper-perl_13.11.8 libdisorder-dev_0.0.2+git20130809.8062ee1-4 libdisorder0_0.0.2+git20130809.8062ee1-4 libdpkg-perl_1.22.1+rpi1 libelf1_0.188-2.1+rpi1 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-10+rpi1 libgcc-13-dev_13.2.0-5+rpi1 libgcc-s1_13.2.0-5+rpi1 libgcrypt20_1.10.2-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_13.2.0-5+rpi1 libgpg-error0_1.47-2 libgssapi-krb5-2_1.20.1-4 libhogweed6_3.9.1-2 libicu72_72.1-4 libidn2-0_2.3.4-1 libisl23_0.26-3 libjansson4_2.14-2 libk5crypto3_1.20.1-4 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-4 libkrb5support0_1.20.1-4 libksba8_1.6.4-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblocale-gettext-perl_1.07-6 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.2-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20231016-1 libnettle8_3.9.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.25.0-5 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libperl5.36_5.36.0-9 libpipeline1_1.5.7-1 libreadline8_8.2-1.3 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-1 libsframe1_2.41-6+rpi1 libsmartcols1_2.39.2-6 libsqlite3-0_3.43.2-1 libss2_1.47.0-2 libssl3_3.0.11-1 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-5+rpi1 libstdc++6_13.2.0-5+rpi1 libsub-override-perl_0.09-4 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtinfo6_6.4+20231016-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libubsan1_13.2.0-5+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring5_1.1-2 libuuid1_2.39.2-6 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20230808-1 mount_2.39.2-6 ncurses-base_6.4+20231016-1 ncurses-bin_6.4+20231016-1 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-9 perl-base_5.36.0-9 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tzdata_2023c-10 usr-is-merged_37 util-linux_2.39.2-6 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: libfastahack
Binary: libfastahack0, libfastahack-dev, fastahack
Architecture: any
Version: 1.0.0+dfsg-11
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/ekg/fastahack
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/libfastahack
Vcs-Git: https://salsa.debian.org/med-team/libfastahack.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man
Package-List:
fastahack deb science optional arch=any
libfastahack-dev deb libdevel optional arch=any
libfastahack0 deb libs optional arch=any
Checksums-Sha1:
3e89fea6a55b5a312a980d1d493a77f64dfb5d9a 9088 libfastahack_1.0.0+dfsg.orig.tar.xz
5d1fe0d92795b53d0164a877bfdf0b2acc5f5bf3 7624 libfastahack_1.0.0+dfsg-11.debian.tar.xz
Checksums-Sha256:
41e512b34158564ae83355a1e11a5ae366f3ca9ac4a31ef80f3f26f3438a91af 9088 libfastahack_1.0.0+dfsg.orig.tar.xz
aec68f5790fe2b9b7ac7557b1182987bf1a3a61b9f24bba99d6f7a5a5270ce23 7624 libfastahack_1.0.0+dfsg-11.debian.tar.xz
Files:
ef74d8e313b8f84e6454baa07b9a0026 9088 libfastahack_1.0.0+dfsg.orig.tar.xz
bca7f6fe5e00c467fba6f584598a006f 7624 libfastahack_1.0.0+dfsg-11.debian.tar.xz
Dgit: b4338c5619bc20a2328953e66c5a1610a31491b0 debian archive/debian/1.0.0+dfsg-11 https://git.dgit.debian.org/libfastahack
-----BEGIN PGP SIGNATURE-----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=/Hub
-----END PGP SIGNATURE-----
gpgv: Signature made Tue Dec 5 16:04:03 2023 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libfastahack_1.0.0+dfsg-11.dsc: no acceptable signature found
dpkg-source: info: extracting libfastahack in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libfastahack_1.0.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking libfastahack_1.0.0+dfsg-11.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying autoconf.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-228044c9-23c9-4ce1-83a0-081dff371b2f
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package libfastahack
dpkg-buildpackage: info: source version 1.0.0+dfsg-11
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
aclocal: warning: couldn't open directory 'config': No such file or directory
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'.
libtoolize: copying file 'config/libtool.m4'
libtoolize: copying file 'config/ltoptions.m4'
libtoolize: copying file 'config/ltsugar.m4'
libtoolize: copying file 'config/ltversion.m4'
libtoolize: copying file 'config/lt~obsolete.m4'
libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am.
configure.ac:30: warning: The macro `AC_PROG_LIBTOOL' is obsolete.
configure.ac:30: You should run autoupdate.
config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from...
configure.ac:30: the top level
configure.ac:51: warning: The macro `AC_HEADER_STDC' is obsolete.
configure.ac:51: You should run autoupdate.
./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from...
configure.ac:51: the top level
configure.ac:30: installing 'config/compile'
configure.ac:30: installing 'config/config.guess'
configure.ac:30: installing 'config/config.sub'
configure.ac:18: installing 'config/install-sh'
configure.ac:18: installing 'config/missing'
Makefile.am: installing 'config/depcomp'
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '114' is supported by ustar format... yes
checking whether GID '124' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether ln -s works... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
./configure: line 16912: AX_CXXFLAGS: command not found
checking for egrep... (cached) /bin/grep -E
checking for stdlib.h... (cached) yes
checking whether make sets $(MAKE)... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating libfastahack.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make all-am
make[2]: Entering directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o FastaHack.o FastaHack.cpp
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libfastahack_la-Fasta.lo `test -f 'Fasta.cpp' || echo './'`Fasta.cpp
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libfastahack_la-split.lo `test -f 'split.cpp' || echo './'`split.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c Fasta.cpp -fPIC -DPIC -o .libs/libfastahack_la-Fasta.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c split.cpp -fPIC -DPIC -o .libs/libfastahack_la-split.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c split.cpp -o libfastahack_la-split.o >/dev/null 2>&1
In file included from /usr/include/c++/13/bits/stl_algobase.h:71,
from /usr/include/c++/13/bits/stl_tree.h:63,
from /usr/include/c++/13/map:62,
from Fasta.h:12,
from Fasta.cpp:9:
/usr/include/c++/13/bits/predefined_ops.h: In function ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Iterator2 = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Compare = bool (*)(FastaIndexEntry, FastaIndexEntry)]’:
/usr/include/c++/13/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
157 | operator()(_Iterator1 __it1, _Iterator2 __it2)
| ^~~~~~~~
/usr/include/c++/13/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
/usr/include/c++/13/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >]’:
/usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator’ changed in GCC 7.1
2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, FastaIndexEntry>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >]’:
/usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/map:63:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, FastaIndexEntry>}; _Key = std::__cxx11::basic_string<char>; _Tp = FastaIndexEntry; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >]’,
inlined from ‘std::__enable_if_t<std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value, std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<std::pair<const _Key, _Tp> >::other>::iterator, bool> > std::map<_Key, _Tp, _Compare, _Alloc>::insert(_Pair&&) [with _Pair = std::pair<std::__cxx11::basic_string<char>, FastaIndexEntry>; _Key = std::__cxx11::basic_string<char>; _Tp = FastaIndexEntry; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >]’ at /usr/include/c++/13/bits/stl_map.h:860:27,
inlined from ‘void FastaIndex::flushEntryToIndex(FastaIndexEntry&)’ at Fasta.cpp:209:17:
/usr/include/c++/13/bits/stl_map.h:640:45: note: parameter passing for argument of type ‘std::map<std::__cxx11::basic_string<char>, FastaIndexEntry>::const_iterator’ {aka ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator’} changed in GCC 7.1
640 | return _M_t._M_emplace_hint_unique(__pos,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
641 | std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, FastaIndexEntry>}; _Key = std::__cxx11::basic_string<char>; _Tp = FastaIndexEntry; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >]’,
inlined from ‘std::__enable_if_t<std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value, std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<std::pair<const _Key, _Tp> >::other>::iterator, bool> > std::map<_Key, _Tp, _Compare, _Alloc>::insert(_Pair&&) [with _Pair = std::pair<std::__cxx11::basic_string<char>, FastaIndexEntry>; _Key = std::__cxx11::basic_string<char>; _Tp = FastaIndexEntry; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >]’ at /usr/include/c++/13/bits/stl_map.h:860:27,
inlined from ‘void FastaIndex::readIndexFile(std::string)’ at Fasta.cpp:60:29:
/usr/include/c++/13/bits/stl_map.h:640:45: note: parameter passing for argument of type ‘std::map<std::__cxx11::basic_string<char>, FastaIndexEntry>::const_iterator’ {aka ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator’} changed in GCC 7.1
640 | return _M_t._M_emplace_hint_unique(__pos,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
641 | std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >]’:
/usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = FastaIndexEntry; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >]’,
inlined from ‘std::string FastaReference::sequenceNameStartingWith(std::string)’ at Fasta.cpp:299:37:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator’ changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/algorithm:61,
from Fasta.h:18:
/usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’:
/usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
1792 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’:
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
1812 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h:1819:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
1819 | if (__comp(__i, __first))
| ~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:72,
from Fasta.h:15:
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const FastaIndexEntry&}; _Tp = FastaIndexEntry; _Alloc = std::allocator<FastaIndexEntry>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<FastaIndexEntry>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algo.h:61:
/usr/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Distance = int; _Tp = FastaIndexEntry; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’:
/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_heap.h:232:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
232 | if (__comp(__first + __secondChild,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
233 | __first + (__secondChild - 1)))
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’:
/usr/include/c++/13/bits/stl_algo.h:1631:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
1631 | __heap_select(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1631:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h:1631:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h:1637:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
1637 | if (__comp(__i, __first))
| ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’:
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
1918 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
In function ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’,
inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’ at /usr/include/c++/13/bits/stl_algo.h:1926:27:
/usr/include/c++/13/bits/stl_algo.h:1910:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
1910 | std::__heap_select(__first, __middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’,
inlined from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’ at /usr/include/c++/13/bits/stl_algo.h:1897:34,
inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’ at /usr/include/c++/13/bits/stl_algo.h:1931:38:
/usr/include/c++/13/bits/stl_algo.h:88:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
88 | if (__comp(__a, __b))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:90:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
90 | if (__comp(__b, __c))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:92:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
92 | else if (__comp(__a, __c))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:97:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
97 | else if (__comp(__a, __c))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:99:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
99 | else if (__comp(__b, __c))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’:
/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = FastaIndexEntry; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >]’,
inlined from ‘std::ostream& operator<<(std::ostream&, FastaIndex&)’ at Fasta.cpp:84:45:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator’ changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = FastaIndexEntry; _Alloc = std::allocator<FastaIndexEntry>]’,
inlined from ‘std::ostream& operator<<(std::ostream&, FastaIndex&)’ at Fasta.cpp:84:30:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Compare = bool (*)(FastaIndexEntry, FastaIndexEntry)]’ at /usr/include/c++/13/bits/stl_algo.h:4894:18,
inlined from ‘std::ostream& operator<<(std::ostream&, FastaIndex&)’ at Fasta.cpp:86:9:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]’ at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<FastaIndexEntry*, vector<FastaIndexEntry> >; _Compare = bool (*)(FastaIndexEntry, FastaIndexEntry)]’ at /usr/include/c++/13/bits/stl_algo.h:4894:18,
inlined from ‘std::ostream& operator<<(std::ostream&, FastaIndex&)’ at Fasta.cpp:86:9:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >’ changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c Fasta.cpp -o libfastahack_la-Fasta.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libfastahack.la -rpath /usr/lib/arm-linux-gnueabihf libfastahack_la-Fasta.lo libfastahack_la-split.lo
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o .libs/libfastahack_la-Fasta.o .libs/libfastahack_la-split.o -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libfastahack.so.0 -o .libs/libfastahack.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libfastahack.so.0" && ln -s "libfastahack.so.0.0.0" "libfastahack.so.0")
libtool: link: (cd ".libs" && rm -f "libfastahack.so" && ln -s "libfastahack.so.0.0.0" "libfastahack.so")
libtool: link: ar cr .libs/libfastahack.a libfastahack_la-Fasta.o libfastahack_la-split.o
libtool: link: ranlib .libs/libfastahack.a
libtool: link: ( cd ".libs" && rm -f "libfastahack.la" && ln -s "../libfastahack.la" "libfastahack.la" )
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o libfastahack.la -ldisorder
libtool: link: g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fastahack FastaHack.o ./.libs/libfastahack.so -ldisorder
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
./fastahack tests/correct.fasta 2>&1 | grep -v ERROR
index file tests/correct.fasta.fai not found, generating...
./fastahack tests/crlf.fasta 2>&1 | grep -v ERROR
index file tests/crlf.fasta.fai not found, generating...
./fastahack tests/embedded_newline.fasta 2>&1 | grep 'ERROR: embedded newline'
ERROR: embedded newline at line 20 within sequence 2
./fastahack tests/mismatched_lines.fasta 2>&1 | grep 'ERROR: mismatched line lengths'
ERROR: mismatched line lengths at line 27 within sequence 3
./fastahack tests/trailing_newlines.fasta 2>&1 | grep -v ERROR
index file tests/trailing_newlines.fasta.fai not found, generating...
rm tests/*.fai
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<BUILDDIR>>/libfastahack-1.0.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libfastahack.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libfastahack.so.0.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libfastahack.so.0.0.0 libfastahack.so.0 || { rm -f libfastahack.so.0 && ln -s libfastahack.so.0.0.0 libfastahack.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libfastahack.so.0.0.0 libfastahack.so || { rm -f libfastahack.so && ln -s libfastahack.so.0.0.0 libfastahack.so; }; })
libtool: install: /usr/bin/install -c .libs/libfastahack.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.la
libtool: install: /usr/bin/install -c .libs/libfastahack.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c fastahack '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
libtool: warning: 'libfastahack.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/fastahack /<<PKGBUILDDIR>>/debian/tmp/usr/bin/fastahack
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/fastahack'
/usr/bin/install -c -m 644 Fasta.h LargeFileSupport.h Region.h split.h '/<<PKGBUILDDIR>>/debian/tmp/usr/include/fastahack'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 libfastahack.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
PKGDEV=libfastahack-dev
PKGSHL=libfastahack0
install -d -m 755 debian/libfastahack-dev/usr/include
mv debian/tmp/usr/include/fastahack debian/libfastahack-dev/usr/include
install -d -m 755 debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
find debian -name libfastahack.la -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
help2man --no-discard-stderr --no-info --version-string=1.0.0+dfsg-11 \
--name="fastahack - indexing and extracting sequences and subsequences from FASTA files" \
./fastahack > debian/fastahack.1
dh_installman
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
debian/rules override_dh_makeshlibs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "Symbols file for architecture armhf is not provided"
Symbols file for architecture armhf is not provided
mkdir -p debian/hidesymbols
mv debian/*.symbols debian/hidesymbols
dh_makeshlibs
# restore original debian/ dir to enable building twice in a row
mv debian/hidesymbols/*.symbols debian
rmdir debian/hidesymbols
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/fastahack/usr/bin/fastahack was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libfastahack0' in '../libfastahack0_1.0.0+dfsg-11_armhf.deb'.
dpkg-deb: building package 'libfastahack-dev' in '../libfastahack-dev_1.0.0+dfsg-11_armhf.deb'.
dpkg-deb: building package 'fastahack-dbgsym' in '../fastahack-dbgsym_1.0.0+dfsg-11_armhf.deb'.
dpkg-deb: building package 'libfastahack0-dbgsym' in '../libfastahack0-dbgsym_1.0.0+dfsg-11_armhf.deb'.
dpkg-deb: building package 'fastahack' in '../fastahack_1.0.0+dfsg-11_armhf.deb'.
dpkg-genbuildinfo --build=any -O../libfastahack_1.0.0+dfsg-11_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../libfastahack_1.0.0+dfsg-11_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-12-08T05:28:40Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libfastahack_1.0.0+dfsg-11_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Tue, 05 Dec 2023 16:59:42 +0100
Source: libfastahack
Binary: fastahack fastahack-dbgsym libfastahack-dev libfastahack0 libfastahack0-dbgsym
Architecture: armhf
Version: 1.0.0+dfsg-11
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
fastahack - utility for indexing and sequence extraction from FASTA files
libfastahack-dev - library for indexing and sequence extraction from FASTA files (de
libfastahack0 - library for indexing and sequence extraction from FASTA files (li
Closes: 1015486
Changes:
libfastahack (1.0.0+dfsg-11) unstable; urgency=medium
.
* d/libfastahack0.symbols: mark optional symbols.
The compiler is leaking a certain number of functions to the library's
symbols table. They are variable depending on compiler version, and
build options such as link time optimization tend to clean them up,
but in both cases this tends to interfere with the existing list.
(Closes: #1015486)
* autoconf.patch: mark forwarding unneeded.
* d/control: declare compliance to standards version 4.6.2.
Checksums-Sha1:
f4c4bcc24580e5861e2fcec04dfdb7b69430c270 75752 fastahack-dbgsym_1.0.0+dfsg-11_armhf.deb
b07ee2fd48a9aee5af3c171b792dbb457b180835 11668 fastahack_1.0.0+dfsg-11_armhf.deb
61b3e2d69754628a3dabc1997013b1dd33b748fc 25932 libfastahack-dev_1.0.0+dfsg-11_armhf.deb
e36b87c5532a0be1f1e4564deb83dbae18e1fc13 271276 libfastahack0-dbgsym_1.0.0+dfsg-11_armhf.deb
eba0e82fea6aa858b921373cb617f07e49b2edf3 23580 libfastahack0_1.0.0+dfsg-11_armhf.deb
8e779828221915154bd7cc526ba6f865f7d4ace5 7261 libfastahack_1.0.0+dfsg-11_armhf.buildinfo
Checksums-Sha256:
1369922d2eb6f408cb38eb6832ac3fe90ca2260504f518260cb1fc7fb745549b 75752 fastahack-dbgsym_1.0.0+dfsg-11_armhf.deb
0ee21a7dcc71d362a98540041263d0c1ffa7989c1fb988eeb9313b7410852c68 11668 fastahack_1.0.0+dfsg-11_armhf.deb
cb54fd5740c4ca8b71d1cdcb5f611a30cac4aa99e3655e51a393cb8c824fa298 25932 libfastahack-dev_1.0.0+dfsg-11_armhf.deb
2a9ea1a422b9daabbfc7bb11b4f2e6514dd7fae001c9ba7da92439f38a4f471b 271276 libfastahack0-dbgsym_1.0.0+dfsg-11_armhf.deb
e6b626f29cb3b274ad688c1fbe748bb20aa6ad789ff6f13b14f28d5d2fa76cd1 23580 libfastahack0_1.0.0+dfsg-11_armhf.deb
1aa0898da56bffc3822291d0ba2638ab5fb2f0aa2759fcb6f54e11ba897bcb90 7261 libfastahack_1.0.0+dfsg-11_armhf.buildinfo
Files:
fcc529e1895ed5da12a2c0c253d34370 75752 debug optional fastahack-dbgsym_1.0.0+dfsg-11_armhf.deb
fc3246bf00163132bf5e2e205843e829 11668 science optional fastahack_1.0.0+dfsg-11_armhf.deb
e0d2a7b964efe3a64b685ae39ce7deb5 25932 libdevel optional libfastahack-dev_1.0.0+dfsg-11_armhf.deb
760875d05a11dadb00aa71c93501a620 271276 debug optional libfastahack0-dbgsym_1.0.0+dfsg-11_armhf.deb
f3ce54a1a5a08d63ed225bbadf94eae6 23580 libs optional libfastahack0_1.0.0+dfsg-11_armhf.deb
c9302abd4eeaddac3d8e6794553fee55 7261 science optional libfastahack_1.0.0+dfsg-11_armhf.buildinfo
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: libfastahack
Binary: fastahack fastahack-dbgsym libfastahack-dev libfastahack0 libfastahack0-dbgsym
Architecture: armhf
Version: 1.0.0+dfsg-11
Checksums-Md5:
fcc529e1895ed5da12a2c0c253d34370 75752 fastahack-dbgsym_1.0.0+dfsg-11_armhf.deb
fc3246bf00163132bf5e2e205843e829 11668 fastahack_1.0.0+dfsg-11_armhf.deb
e0d2a7b964efe3a64b685ae39ce7deb5 25932 libfastahack-dev_1.0.0+dfsg-11_armhf.deb
760875d05a11dadb00aa71c93501a620 271276 libfastahack0-dbgsym_1.0.0+dfsg-11_armhf.deb
f3ce54a1a5a08d63ed225bbadf94eae6 23580 libfastahack0_1.0.0+dfsg-11_armhf.deb
Checksums-Sha1:
f4c4bcc24580e5861e2fcec04dfdb7b69430c270 75752 fastahack-dbgsym_1.0.0+dfsg-11_armhf.deb
b07ee2fd48a9aee5af3c171b792dbb457b180835 11668 fastahack_1.0.0+dfsg-11_armhf.deb
61b3e2d69754628a3dabc1997013b1dd33b748fc 25932 libfastahack-dev_1.0.0+dfsg-11_armhf.deb
e36b87c5532a0be1f1e4564deb83dbae18e1fc13 271276 libfastahack0-dbgsym_1.0.0+dfsg-11_armhf.deb
eba0e82fea6aa858b921373cb617f07e49b2edf3 23580 libfastahack0_1.0.0+dfsg-11_armhf.deb
Checksums-Sha256:
1369922d2eb6f408cb38eb6832ac3fe90ca2260504f518260cb1fc7fb745549b 75752 fastahack-dbgsym_1.0.0+dfsg-11_armhf.deb
0ee21a7dcc71d362a98540041263d0c1ffa7989c1fb988eeb9313b7410852c68 11668 fastahack_1.0.0+dfsg-11_armhf.deb
cb54fd5740c4ca8b71d1cdcb5f611a30cac4aa99e3655e51a393cb8c824fa298 25932 libfastahack-dev_1.0.0+dfsg-11_armhf.deb
2a9ea1a422b9daabbfc7bb11b4f2e6514dd7fae001c9ba7da92439f38a4f471b 271276 libfastahack0-dbgsym_1.0.0+dfsg-11_armhf.deb
e6b626f29cb3b274ad688c1fbe748bb20aa6ad789ff6f13b14f28d5d2fa76cd1 23580 libfastahack0_1.0.0+dfsg-11_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Fri, 08 Dec 2023 05:28:39 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
adduser (= 3.137),
apt (= 2.7.6),
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-14),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.2),
bash (= 5.2.15-2),
binutils (= 2.41-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
binutils-common (= 2.41-6+rpi1),
bsdextrautils (= 2.39.2-6),
bsdutils (= 1:2.39.2-6),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
coreutils (= 9.1-1),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.3.0-10+rpi1),
cpp-13 (= 13.2.0-5+rpi1),
d-shlibs (= 0.105),
dash (= 0.5.12-6),
debconf (= 1.5.82),
debhelper (= 13.11.8),
debianutils (= 5.14),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.10-1),
dirmngr (= 2.2.40-1.1),
dpkg (= 1.22.1+rpi1),
dpkg-dev (= 1.22.1+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-5+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-10+rpi1),
gcc-12-base (= 12.3.0-10+rpi1),
gcc-13 (= 13.2.0-5+rpi1),
gcc-13-base (= 13.2.0-5+rpi1),
gettext (= 0.21-14),
gettext-base (= 0.21-14),
gnupg (= 2.2.40-1.1),
gnupg-l10n (= 2.2.40-1.1),
gnupg-utils (= 2.2.40-1.1),
gpg (= 2.2.40-1.1),
gpg-agent (= 2.2.40-1.1),
gpg-wks-client (= 2.2.40-1.1),
gpg-wks-server (= 2.2.40-1.1),
gpgconf (= 2.2.40-1.1),
gpgsm (= 2.2.40-1.1),
gpgv (= 2.2.40-1.1),
grep (= 3.11-3),
groff-base (= 1.23.0-3),
gzip (= 1.12-1),
help2man (= 1.49.3),
hostname (= 3.23+nmu1),
init-system-helpers (= 1.65.2),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-3),
libapt-pkg6.0 (= 2.7.6),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 13.2.0-5+rpi1),
libassuan0 (= 2.5.6-1),
libatomic1 (= 13.2.0-5+rpi1),
libattr1 (= 1:2.5.1-4),
libaudit-common (= 1:3.1.1-1),
libaudit1 (= 1:3.1.1-1),
libbinutils (= 2.41-6+rpi1),
libblkid1 (= 2.39.2-6),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.37-12+rpi2),
libc-dev-bin (= 2.37-12+rpi2),
libc6 (= 2.37-12+rpi2),
libc6-dev (= 2.37-12+rpi2),
libcap-ng0 (= 0.8.3-1+b1),
libcap2 (= 1:2.66-4),
libcc1-0 (= 13.2.0-5+rpi1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-2),
libcrypt1 (= 1:4.4.36-2),
libctf-nobfd0 (= 2.41-6+rpi1),
libctf0 (= 2.41-6+rpi1),
libdb5.3 (= 5.3.28+dfsg2-2),
libdebconfclient0 (= 0.271),
libdebhelper-perl (= 13.11.8),
libdisorder-dev (= 0.0.2+git20130809.8062ee1-4),
libdisorder0 (= 0.0.2+git20130809.8062ee1-4),
libdpkg-perl (= 1.22.1+rpi1),
libelf1 (= 0.188-2.1+rpi1),
libffi8 (= 3.4.4-1),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libgcc-12-dev (= 12.3.0-10+rpi1),
libgcc-13-dev (= 13.2.0-5+rpi1),
libgcc-s1 (= 13.2.0-5+rpi1),
libgcrypt20 (= 1.10.2-3),
libgdbm-compat4 (= 1.23-3),
libgdbm6 (= 1.23-3),
libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30 (= 3.8.1-4),
libgomp1 (= 13.2.0-5+rpi1),
libgpg-error0 (= 1.47-2),
libgssapi-krb5-2 (= 1.20.1-4),
libhogweed6 (= 3.9.1-2),
libicu72 (= 72.1-4),
libidn2-0 (= 2.3.4-1),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libk5crypto3 (= 1.20.1-4),
libkeyutils1 (= 1.6.3-2),
libkrb5-3 (= 1.20.1-4),
libkrb5support0 (= 1.20.1-4),
libksba8 (= 1.6.4-2),
libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1),
liblocale-gettext-perl (= 1.07-6),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma5 (= 5.4.4-0.1),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmd0 (= 1.1.0-1),
libmount1 (= 2.39.2-6),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libncursesw6 (= 6.4+20231016-1),
libnettle8 (= 3.9.1-2),
libnpth0 (= 1.6-3),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit0 (= 0.25.0-5),
libpam-modules (= 1.5.2-9.1),
libpam-modules-bin (= 1.5.2-9.1),
libpam-runtime (= 1.5.2-9.1),
libpam0g (= 1.5.2-9.1),
libpcre2-8-0 (= 10.42-4),
libperl5.36 (= 5.36.0-9),
libpipeline1 (= 1.5.7-1),
libreadline8 (= 8.2-1.3),
libsasl2-2 (= 2.1.28+dfsg1-3),
libsasl2-modules-db (= 2.1.28+dfsg1-3),
libseccomp2 (= 2.5.4-1+rpi1+b1),
libselinux1 (= 3.5-1),
libsemanage-common (= 3.5-1),
libsemanage2 (= 3.5-1),
libsepol2 (= 3.5-1),
libsframe1 (= 2.41-6+rpi1),
libsmartcols1 (= 2.39.2-6),
libsqlite3-0 (= 3.43.2-1),
libssl3 (= 3.0.11-1),
libstdc++-13-dev (= 13.2.0-5+rpi1),
libstdc++6 (= 13.2.0-5+rpi1),
libsub-override-perl (= 0.09-4),
libsystemd0 (= 254.5-1+rpi1),
libtasn1-6 (= 4.19.0-3),
libtinfo6 (= 6.4+20231016-1),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtool (= 2.4.7-7),
libubsan1 (= 13.2.0-5+rpi1),
libuchardet0 (= 0.0.8-1),
libudev1 (= 254.5-1+rpi1),
libunistring5 (= 1.1-2),
libuuid1 (= 2.39.2-6),
libxml2 (= 2.9.14+dfsg-1.3),
libxxhash0 (= 0.8.2-2),
libzstd1 (= 1.5.5+dfsg2-2),
linux-libc-dev (= 6.5.6-1+rpi1),
login (= 1:4.13+dfsg1-3),
lsb-base (= 11.6+rpi1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.0-1),
mawk (= 1.3.4.20230808-1),
ncurses-base (= 6.4+20231016-1),
ncurses-bin (= 6.4+20231016-1),
passwd (= 1:4.13+dfsg1-3),
patch (= 2.7.6-7),
perl (= 5.36.0-9),
perl-base (= 5.36.0-9),
perl-modules-5.36 (= 5.36.0-9),
pinentry-curses (= 1.2.1-1),
po-debconf (= 1.0.21+nmu1),
raspbian-archive-keyring (= 20120528.2),
readline-common (= 8.2-1.3),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.08-3),
tar (= 1.34+dfsg-1.2),
usr-is-merged (= 37),
util-linux (= 2.39.2-6),
xz-utils (= 5.4.4-0.1),
zlib1g (= 1:1.2.13.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1701791982"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
fastahack-dbgsym_1.0.0+dfsg-11_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 75752 bytes: control archive=544 bytes.
392 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: fastahack-dbgsym
Source: libfastahack
Version: 1.0.0+dfsg-11
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 89
Depends: fastahack (= 1.0.0+dfsg-11)
Section: debug
Priority: optional
Description: debug symbols for fastahack
Build-Ids: 98e59514a51e335b3674cd467aabaff2ad084f89
drwxr-xr-x root/root 0 2023-12-05 15:59 ./
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/debug/.build-id/98/
-rw-r--r-- root/root 80096 2023-12-05 15:59 ./usr/lib/debug/.build-id/98/e59514a51e335b3674cd467aabaff2ad084f89.debug
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-12-05 15:59 ./usr/share/doc/fastahack-dbgsym -> fastahack
fastahack_1.0.0+dfsg-11_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 11668 bytes: control archive=1104 bytes.
1357 bytes, 29 lines control
331 bytes, 5 lines md5sums
Package: fastahack
Source: libfastahack
Version: 1.0.0+dfsg-11
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 35
Depends: libc6 (>= 2.34), libdisorder0 (>= 0.0.2), libfastahack0 (>= 1.0.0+dfsg), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1)
Breaks: libfastahack0 (<< 1.0.0+dfsg-4)
Replaces: libfastahack0 (<< 1.0.0+dfsg-4)
Section: science
Priority: optional
Homepage: https://github.com/ekg/fastahack
Description: utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
drwxr-xr-x root/root 0 2023-12-05 15:59 ./
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/bin/
-rwxr-xr-x root/root 18024 2023-12-05 15:59 ./usr/bin/fastahack
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/doc/fastahack/
-rw-r--r-- root/root 2958 2019-09-04 06:16 ./usr/share/doc/fastahack/README
-rw-r--r-- root/root 1400 2023-12-05 15:59 ./usr/share/doc/fastahack/changelog.Debian.gz
-rw-r--r-- root/root 1448 2023-12-05 15:59 ./usr/share/doc/fastahack/copyright
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/man/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/man/man1/
-rw-r--r-- root/root 636 2023-12-05 15:59 ./usr/share/man/man1/fastahack.1.gz
libfastahack-dev_1.0.0+dfsg-11_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 25932 bytes: control archive=1212 bytes.
1327 bytes, 31 lines control
593 bytes, 8 lines md5sums
Package: libfastahack-dev
Source: libfastahack
Version: 1.0.0+dfsg-11
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 103
Depends: libfastahack0 (= 1.0.0+dfsg-11)
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/ekg/fastahack
Description: library for indexing and sequence extraction from FASTA files (devel)
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
.
This is the development package containing the statically linked
library and the header files.
drwxr-xr-x root/root 0 2023-12-05 15:59 ./
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/include/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/include/fastahack/
-rw-r--r-- root/root 2823 2023-12-05 15:59 ./usr/include/fastahack/Fasta.h
-rw-r--r-- root/root 412 2023-12-05 15:59 ./usr/include/fastahack/LargeFileSupport.h
-rw-r--r-- root/root 1609 2023-12-05 15:59 ./usr/include/fastahack/Region.h
-rw-r--r-- root/root 781 2023-12-05 15:59 ./usr/include/fastahack/split.h
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 80530 2023-12-05 15:59 ./usr/lib/arm-linux-gnueabihf/libfastahack.a
lrwxrwxrwx root/root 0 2023-12-05 15:59 ./usr/lib/arm-linux-gnueabihf/libfastahack.so -> libfastahack.so.0.0.0
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 264 2023-12-05 15:59 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libfastahack.pc
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/doc/libfastahack-dev/
-rw-r--r-- root/root 1401 2023-12-05 15:59 ./usr/share/doc/libfastahack-dev/changelog.Debian.gz
-rw-r--r-- root/root 1448 2023-12-05 15:59 ./usr/share/doc/libfastahack-dev/copyright
libfastahack0-dbgsym_1.0.0+dfsg-11_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 271276 bytes: control archive=560 bytes.
422 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libfastahack0-dbgsym
Source: libfastahack
Version: 1.0.0+dfsg-11
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 286
Depends: libfastahack0 (= 1.0.0+dfsg-11)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libfastahack0
Build-Ids: 88f9b19d4f89fe9533d0b5bf7def4e9d4c2a49bf
drwxr-xr-x root/root 0 2023-12-05 15:59 ./
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/debug/.build-id/88/
-rw-r--r-- root/root 282324 2023-12-05 15:59 ./usr/lib/debug/.build-id/88/f9b19d4f89fe9533d0b5bf7def4e9d4c2a49bf.debug
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-12-05 15:59 ./usr/share/doc/libfastahack0-dbgsym -> libfastahack0
libfastahack0_1.0.0+dfsg-11_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 23580 bytes: control archive=1156 bytes.
1290 bytes, 30 lines control
238 bytes, 3 lines md5sums
45 bytes, 1 lines shlibs
68 bytes, 2 lines triggers
Package: libfastahack0
Source: libfastahack
Version: 1.0.0+dfsg-11
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 69
Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/ekg/fastahack
Description: library for indexing and sequence extraction from FASTA files (lib)
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
.
This package contains the dynamic library.
drwxr-xr-x root/root 0 2023-12-05 15:59 ./
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2023-12-05 15:59 ./usr/lib/arm-linux-gnueabihf/libfastahack.so.0 -> libfastahack.so.0.0.0
-rw-r--r-- root/root 54632 2023-12-05 15:59 ./usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-12-05 15:59 ./usr/share/doc/libfastahack0/
-rw-r--r-- root/root 1400 2023-12-05 15:59 ./usr/share/doc/libfastahack0/changelog.Debian.gz
-rw-r--r-- root/root 1448 2023-12-05 15:59 ./usr/share/doc/libfastahack0/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 11596
Build-Time: 25
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 26
Job: libfastahack_1.0.0+dfsg-11
Machine Architecture: arm64
Package: libfastahack
Package-Time: 59
Source-Version: 1.0.0+dfsg-11
Space: 11596
Status: successful
Version: 1.0.0+dfsg-11
--------------------------------------------------------------------------------
Finished at 2023-12-08T05:28:40Z
Build needed 00:00:59, 11596k disk space