libfastahack →
1.0.0+dfsg-10 →
armhf → 2022-07-16 05:15:31
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| libfastahack 1.0.0+dfsg-10 (armhf) Sat, 16 Jul 2022 05:11:19 +0000 |
+==============================================================================+
Package: libfastahack
Version: 1.0.0+dfsg-10
Source Version: 1.0.0+dfsg-10
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-98416052-b0d4-4149-8cde-b9e2103e5b4b' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.1 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.0 MB]
Fetched 27.2 MB in 12s (2261 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libfastahack' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libfastahack.git
Please use:
git clone https://salsa.debian.org/med-team/libfastahack.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 18.9 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main libfastahack 1.0.0+dfsg-10 (dsc) [2357 B]
Get:2 http://172.17.4.1/private bookworm-staging/main libfastahack 1.0.0+dfsg-10 (tar) [9088 B]
Get:3 http://172.17.4.1/private bookworm-staging/main libfastahack 1.0.0+dfsg-10 (diff) [7428 B]
Fetched 18.9 kB in 0s (459 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libfastahack-ORe4C5/libfastahack-1.0.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libfastahack-ORe4C5' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-YX1bnF/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-YX1bnF/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-YX1bnF/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-YX1bnF/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-YX1bnF/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-YX1bnF/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-YX1bnF/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-YX1bnF/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (3311 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 48 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-YX1bnF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (47.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12794 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man
dpkg-deb: building package 'sbuild-build-depends-libfastahack-dummy' in '/<<BUILDDIR>>/resolver-YX1bnF/apt_archive/sbuild-build-depends-libfastahack-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libfastahack-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-YX1bnF/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-YX1bnF/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-YX1bnF/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-YX1bnF/apt_archive ./ Sources [519 B]
Get:5 copy:/<<BUILDDIR>>/resolver-YX1bnF/apt_archive ./ Packages [596 B]
Fetched 2448 B in 0s (4916 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libfastahack build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libdebhelper-perl
libdisorder-dev libdisorder0 libelf1 libfile-stripnondeterminism-perl
libicu71 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1
libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libdebhelper-perl
libdisorder-dev libdisorder0 libelf1 libfile-stripnondeterminism-perl
libicu71 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1
libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
po-debconf sbuild-build-depends-libfastahack-dummy
0 upgraded, 36 newly installed, 0 to remove and 48 not upgraded.
Need to get 18.4 MB of archives.
After this operation, 68.3 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-YX1bnF/apt_archive ./ sbuild-build-depends-libfastahack-dummy 0.invalid.0 [884 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf liblocale-gettext-perl armhf 1.07-4+b2 [18.3 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38-4 [137 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-1 [33.7 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-6 [171 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf d-shlibs all 0.104 [18.6 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.8 [195 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-1 [175 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.8 [1070 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf help2man armhf 1.49.2 [202 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libdisorder0 armhf 0.0.2+git20130809.8062ee1-4 [4856 B]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libdisorder-dev armhf 0.0.2+git20130809.8062ee1-4 [4484 B]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.5.6-1) ...
Setting up libdisorder0:armhf (0.0.2+git20130809.8062ee1-4) ...
Setting up libicu71:armhf (71.1-3) ...
Setting up bsdextrautils (2.38-4) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
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Setting up libmagic1:armhf (1:5.41-4) ...
Setting up gettext-base (0.21-6) ...
Setting up file (1:5.41-4) ...
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Setting up libdisorder-dev:armhf (0.0.2+git20130809.8062ee1-4) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-3) ...
Setting up libelf1:armhf (0.187-1) ...
Setting up libxml2:armhf (2.9.14+dfsg-1) ...
Setting up liblocale-gettext-perl (1.07-4+b2) ...
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up gettext (0.21-6) ...
Setting up libtool (2.4.7-4) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up help2man (1.49.2) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-8) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.10.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up debhelper (13.8) ...
Setting up sbuild-build-depends-libfastahack-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.38-4+rpi1 dpkg-dev_1.21.8+rpi1 g++-11_11.3.0-1+rpi1 gcc-11_11.3.0-1+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.3.0-1+rpi1 libstdc++6_12.1.0-2+rpi1 linux-libc-dev_5.18.2-1+rpi1
Package versions: adduser_3.121 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6.1 binutils_2.38-4+rpi1 binutils-arm-linux-gnueabihf_2.38-4+rpi1 binutils-common_2.38-4+rpi1 bsdextrautils_2.38-4 bsdutils_1:2.38-4 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.3.0-1+rpi1 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.8 debianutils_5.7-0.2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.35-2 dpkg_1.21.8+rpi1 dpkg-dev_1.21.8+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:11.2.0-2+rpi1 g++-11_11.3.0-1+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.3.0-1+rpi1 gcc-11-base_11.3.0-1+rpi1 gcc-12-base_12.1.0-2+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-6 gettext-base_0.21-6 gnupg_2.2.35-2 gnupg-l10n_2.2.35-2 gnupg-utils_2.2.35-2 gpg_2.2.35-2 gpg-agent_2.2.35-2 gpg-wks-client_2.2.35-2 gpg-wks-server_2.2.35-2 gpgconf_2.2.35-2 gpgsm_2.2.35-2 gpgv_2.2.35-2 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 help2man_1.49.2 hostname_3.23 init-system-helpers_1.63 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 krb5-locales_1.19.2-2 libacl1_2.3.1-1 libapt-pkg6.0_2.5.0 libarchive-zip-perl_1.68-1 libasan6_11.3.0-1+rpi1 libassuan0_2.5.5-3 libatomic1_12.1.0-2+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38-4+rpi1 libblkid1_2.38-4 libbz2-1.0_1.0.8-5+b2 libc-bin_2.33-7+rpi1 libc-dev-bin_2.33-7+rpi1 libc6_2.33-7+rpi1 libc6-dev_2.33-7+rpi1 libcap-ng0_0.7.9-2.2+b2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.1.0-2+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.38-4+rpi1 libctf0_2.38-4+rpi1 libdb5.3_5.3.28+dfsg1-0.9 libdebconfclient0_0.263 libdebhelper-perl_13.8 libdisorder-dev_0.0.2+git20130809.8062ee1-4 libdisorder0_0.0.2+git20130809.8062ee1-4 libdpkg-perl_1.21.8+rpi1 libelf1_0.187-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.3.0-1+rpi1 libgcc-s1_12.1.0-2+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.4-2 libgomp1_12.1.0-2+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.19.2-2+b7 libhogweed6_3.7.3-1 libicu71_71.1-3 libidn2-0_2.3.2-2 libisl23_0.24-2 libk5crypto3_1.19.2-2+b7 libkeyutils1_1.6.1-3+rpi1 libkrb5-3_1.19.2-2+b7 libkrb5support0_1.19.2-2+b7 libksba8_1.6.0-2 libldap-2.5-0_2.5.12+dfsg-2 liblocale-gettext-perl_1.07-4+b2 liblz4-1_1.9.3-2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-4 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.4.0-13 libpam-modules-bin_1.4.0-13 libpam-runtime_1.4.0-13 libpam0g_1.4.0-13 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-4 libpipeline1_1.5.6-1 libreadline8_8.1.2-1.2 libsasl2-2_2.1.28+dfsg-6+b1 libsasl2-modules-db_2.1.28+dfsg-6+b1 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsigsegv2_2.14-1 libsmartcols1_2.38-4 libsqlite3-0_3.38.5-1 libss2_1.46.5-2 libssl1.1_1.1.1o-1 libssl3_3.0.3-8 libstdc++-11-dev_11.3.0-1+rpi1 libstdc++6_12.1.0-2+rpi1 libsub-override-perl_0.09-3 libsystemd0_250.4-1+rpi1 libtasn1-6_4.18.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.7-4 libubsan1_12.1.0-2+rpi1 libuchardet0_0.0.7-1 libudev1_250.4-1+rpi1 libunistring2_1.0-1 libuuid1_2.38-4 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.2-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 mount_2.38-4 nano_6.3-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-4 perl-base_5.34.0-4 perl-modules-5.34_5.34.0-4 pinentry-curses_1.2.0-1 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libfastahack-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.03-1 tar_1.34+dfsg-1 tzdata_2022a-1 util-linux_2.38-4 util-linux-extra_2.38-4 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4+b2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.Zu_9KIOD/trustedkeys.kbx': General error
gpgv: Signature made Thu Jul 14 08:33:59 2022 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./libfastahack_1.0.0+dfsg-10.dsc
dpkg-source: info: extracting libfastahack in /<<BUILDDIR>>/libfastahack-1.0.0+dfsg
dpkg-source: info: unpacking libfastahack_1.0.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking libfastahack_1.0.0+dfsg-10.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying autoconf.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-98416052-b0d4-4149-8cde-b9e2103e5b4b
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libfastahack
dpkg-buildpackage: info: source version 1.0.0+dfsg-10
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
aclocal: warning: couldn't open directory 'config': No such file or directory
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'.
libtoolize: copying file 'config/libtool.m4'
libtoolize: copying file 'config/ltoptions.m4'
libtoolize: copying file 'config/ltsugar.m4'
libtoolize: copying file 'config/ltversion.m4'
libtoolize: copying file 'config/lt~obsolete.m4'
libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am.
configure.ac:30: warning: The macro `AC_PROG_LIBTOOL' is obsolete.
configure.ac:30: You should run autoupdate.
config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from...
configure.ac:30: the top level
configure.ac:51: warning: The macro `AC_HEADER_STDC' is obsolete.
configure.ac:51: You should run autoupdate.
./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from...
configure.ac:51: the top level
configure.ac:30: installing 'config/compile'
configure.ac:30: installing 'config/config.guess'
configure.ac:30: installing 'config/config.sub'
configure.ac:18: installing 'config/install-sh'
configure.ac:18: installing 'config/missing'
Makefile.am: installing 'config/depcomp'
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '107' is supported by ustar format... yes
checking whether GID '112' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether ln -s works... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
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checking for string.h... yes
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checking for strings.h... yes
checking for sys/stat.h... yes
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checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
./configure: line 16912: AX_CXXFLAGS: command not found
checking for egrep... (cached) /bin/grep -E
checking for stdlib.h... (cached) yes
checking whether make sets $(MAKE)... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating libfastahack.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
make all-am
make[2]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o FastaHack.o FastaHack.cpp
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfastahack_la-Fasta.lo `test -f 'Fasta.cpp' || echo './'`Fasta.cpp
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfastahack_la-split.lo `test -f 'split.cpp' || echo './'`split.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c split.cpp -fPIC -DPIC -o .libs/libfastahack_la-split.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Fasta.cpp -fPIC -DPIC -o .libs/libfastahack_la-Fasta.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c split.cpp -o libfastahack_la-split.o >/dev/null 2>&1
In file included from /usr/include/c++/11/bits/stl_algobase.h:71,
from /usr/include/c++/11/bits/stl_tree.h:63,
from /usr/include/c++/11/map:60,
from Fasta.h:12,
from Fasta.cpp:9:
/usr/include/c++/11/bits/predefined_ops.h: In function 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Iterator2 = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Compare = bool (*)(FastaIndexEntry, FastaIndexEntry)]':
/usr/include/c++/11/bits/predefined_ops.h:157:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
157 | operator()(_Iterator1 __it1, _Iterator2 __it2)
| ^~~~~~~~
/usr/include/c++/11/bits/predefined_ops.h:157:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
In file included from /usr/include/c++/11/vector:72,
from Fasta.h:15,
from Fasta.cpp:9:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const FastaIndexEntry&}; _Tp = FastaIndexEntry; _Alloc = std::allocator<FastaIndexEntry>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<FastaIndexEntry>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/map:60,
from Fasta.h:12,
from Fasta.cpp:9:
/usr/include/c++/11/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >]':
/usr/include/c++/11/bits/stl_tree.h:2428:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator' changed in GCC 7.1
2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/map:61,
from Fasta.h:12,
from Fasta.cpp:9:
/usr/include/c++/11/bits/stl_map.h: In member function 'std::string FastaReference::sequenceNameStartingWith(std::string)':
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/algorithm:62,
from Fasta.h:18,
from Fasta.cpp:9:
/usr/include/c++/11/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1799 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1819 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
In file included from /usr/include/c++/11/bits/stl_algo.h:61,
from /usr/include/c++/11/algorithm:62,
from Fasta.h:18,
from Fasta.cpp:9:
/usr/include/c++/11/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Distance = int; _Tp = FastaIndexEntry; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_heap.h:231:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
231 | if (__comp(__first + __secondChild,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
232 | __first + (__secondChild - 1)))
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/algorithm:62,
from Fasta.h:18,
from Fasta.cpp:9:
/usr/include/c++/11/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1642 | __heap_select(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
/usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
/usr/include/c++/11/bits/stl_algo.h:1648:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1648 | if (__comp(__i, __first))
| ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1925 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
/usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
/usr/include/c++/11/bits/stl_algo.h:82:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
82 | if (__comp(__a, __b))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:84:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
84 | if (__comp(__b, __c))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:86:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
86 | else if (__comp(__a, __c))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:91:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
91 | else if (__comp(__a, __c))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:93:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
93 | else if (__comp(__b, __c))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1917 | std::__heap_select(__first, __middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/map:61,
from Fasta.h:12,
from Fasta.cpp:9:
/usr/include/c++/11/bits/stl_map.h: In function 'std::ostream& operator<<(std::ostream&, FastaIndex&)':
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from Fasta.h:15,
from Fasta.cpp:9:
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/algorithm:62,
from Fasta.h:18,
from Fasta.cpp:9:
/usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1954 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1955 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1956 | __comp);
| ~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
1871 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Fasta.cpp -o libfastahack_la-Fasta.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libfastahack.la -rpath /usr/lib/arm-linux-gnueabihf libfastahack_la-Fasta.lo libfastahack_la-split.lo
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/11/crtbeginS.o .libs/libfastahack_la-Fasta.o .libs/libfastahack_la-split.o -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/11/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libfastahack.so.0 -o .libs/libfastahack.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libfastahack.so.0" && ln -s "libfastahack.so.0.0.0" "libfastahack.so.0")
libtool: link: (cd ".libs" && rm -f "libfastahack.so" && ln -s "libfastahack.so.0.0.0" "libfastahack.so")
libtool: link: ar cr .libs/libfastahack.a libfastahack_la-Fasta.o libfastahack_la-split.o
libtool: link: ranlib .libs/libfastahack.a
libtool: link: ( cd ".libs" && rm -f "libfastahack.la" && ln -s "../libfastahack.la" "libfastahack.la" )
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o libfastahack.la -ldisorder
libtool: link: g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fastahack FastaHack.o ./.libs/libfastahack.so -ldisorder
make[2]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
./fastahack tests/correct.fasta 2>&1 | grep -v ERROR
index file tests/correct.fasta.fai not found, generating...
./fastahack tests/crlf.fasta 2>&1 | grep -v ERROR
index file tests/crlf.fasta.fai not found, generating...
./fastahack tests/embedded_newline.fasta 2>&1 | grep 'ERROR: embedded newline'
ERROR: embedded newline at line 20 within sequence 2
./fastahack tests/mismatched_lines.fasta 2>&1 | grep 'ERROR: mismatched line lengths'
ERROR: mismatched line lengths at line 27 within sequence 3
./fastahack tests/trailing_newlines.fasta 2>&1 | grep -v ERROR
index file tests/trailing_newlines.fasta.fai not found, generating...
rm tests/*.fai
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<BUILDDIR>>/libfastahack-1.0.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
make[2]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
/bin/mkdir -p '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libfastahack.la '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libfastahack.so.0.0.0 /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0
libtool: install: (cd /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libfastahack.so.0.0.0 libfastahack.so.0 || { rm -f libfastahack.so.0 && ln -s libfastahack.so.0.0.0 libfastahack.so.0; }; })
libtool: install: (cd /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libfastahack.so.0.0.0 libfastahack.so || { rm -f libfastahack.so && ln -s libfastahack.so.0.0.0 libfastahack.so; }; })
libtool: install: /usr/bin/install -c .libs/libfastahack.lai /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.la
libtool: install: /usr/bin/install -c .libs/libfastahack.a /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: install: chmod 644 /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: install: ranlib /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c fastahack '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin'
libtool: warning: 'libfastahack.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/fastahack /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin/fastahack
/bin/mkdir -p '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack'
/usr/bin/install -c -m 644 Fasta.h LargeFileSupport.h Region.h split.h '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack'
/bin/mkdir -p '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 libfastahack.pc '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
make[2]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
PKGDEV=libfastahack-dev
PKGSHL=libfastahack0
install -d -m 755 debian/libfastahack-dev/usr/include
mv debian/tmp/usr/include/fastahack debian/libfastahack-dev/usr/include
install -d -m 755 debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
find debian -name libfastahack.la -delete
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
help2man --no-discard-stderr --no-info --version-string=1.0.0+dfsg-10 \
--name="fastahack - indexing and extracting sequences and subsequences from FASTA files" \
./fastahack > debian/fastahack.1
dh_installman
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
debian/rules override_dh_makeshlibs
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
echo "Symbols file for architecture armhf is not provided"
Symbols file for architecture armhf is not provided
mkdir -p debian/hidesymbols
mv debian/*.symbols debian/hidesymbols
dh_makeshlibs
# restore original debian/ dir to enable building twice in a row
mv debian/hidesymbols/*.symbols debian
rmdir debian/hidesymbols
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-1.0.0+dfsg'
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libfastahack0/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0 found in none of the libraries
dpkg-shlibdeps: warning: debian/fastahack/usr/bin/fastahack contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/fastahack/usr/bin/fastahack was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'fastahack-dbgsym' in '../fastahack-dbgsym_1.0.0+dfsg-10_armhf.deb'.
dpkg-deb: building package 'libfastahack0' in '../libfastahack0_1.0.0+dfsg-10_armhf.deb'.
dpkg-deb: building package 'libfastahack-dev' in '../libfastahack-dev_1.0.0+dfsg-10_armhf.deb'.
dpkg-deb: building package 'libfastahack0-dbgsym' in '../libfastahack0-dbgsym_1.0.0+dfsg-10_armhf.deb'.
dpkg-deb: building package 'fastahack' in '../fastahack_1.0.0+dfsg-10_armhf.deb'.
dpkg-genbuildinfo --build=any -O../libfastahack_1.0.0+dfsg-10_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../libfastahack_1.0.0+dfsg-10_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-07-16T05:15:26Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libfastahack_1.0.0+dfsg-10_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Thu, 14 Jul 2022 10:28:30 +0200
Source: libfastahack
Binary: fastahack fastahack-dbgsym libfastahack-dev libfastahack0 libfastahack0-dbgsym
Architecture: armhf
Version: 1.0.0+dfsg-10
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
fastahack - utility for indexing and sequence extraction from FASTA files
libfastahack-dev - library for indexing and sequence extraction from FASTA files (de
libfastahack0 - library for indexing and sequence extraction from FASTA files (li
Closes: 1012976
Changes:
libfastahack (1.0.0+dfsg-10) unstable; urgency=medium
.
* d/control: add myself to uploaders.
* d/libfastahack0.symbols: mark GCC 12 specific symbols optional.
(Closes: #1012976)
* d/control: declare compliance to standards version 4.6.1.
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Checksums-Sha256:
eb1a9708a442c3ad235da26cd5fa4de3bc41b359e332d59ff8eda54fb71c5f57 80092 fastahack-dbgsym_1.0.0+dfsg-10_armhf.deb
5de3c395f0b6c1b85ff9e71e536257a6685848e01e0a70272737d7a20b5f39d1 12100 fastahack_1.0.0+dfsg-10_armhf.deb
3dc725f88ad67db74e77bc019893b8dc4d2a92b62e5834e290198b221efb145d 26304 libfastahack-dev_1.0.0+dfsg-10_armhf.deb
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bbd71a89e6bd2aac864a09f50f664b4ed4e5d37520e28277f8c80cea7d62852e 23924 libfastahack0_1.0.0+dfsg-10_armhf.deb
7139f9a179265cab2023123a1ce3590e4724a7e0df5d9b4b1c73129e513a7a2a 7096 libfastahack_1.0.0+dfsg-10_armhf.buildinfo
Files:
af83a2bbc08b5294c90a111b313410aa 80092 debug optional fastahack-dbgsym_1.0.0+dfsg-10_armhf.deb
4cffba5f1df21d8e95d0344d03d554b9 12100 science optional fastahack_1.0.0+dfsg-10_armhf.deb
1218a887eb1614919bd95eb06bf59c61 26304 libdevel optional libfastahack-dev_1.0.0+dfsg-10_armhf.deb
24a583b979a263f846bd15c4d999064e 275688 debug optional libfastahack0-dbgsym_1.0.0+dfsg-10_armhf.deb
af3466c73b8d8aecefb37ef7246fdab2 23924 libs optional libfastahack0_1.0.0+dfsg-10_armhf.deb
1bc2eca4bf3355dd4c9d1b80114dab1a 7096 science optional libfastahack_1.0.0+dfsg-10_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
fastahack-dbgsym_1.0.0+dfsg-10_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 80092 bytes: control archive=544 bytes.
392 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: fastahack-dbgsym
Source: libfastahack
Version: 1.0.0+dfsg-10
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 93
Depends: fastahack (= 1.0.0+dfsg-10)
Section: debug
Priority: optional
Description: debug symbols for fastahack
Build-Ids: 2a2232a5823b20c7af0361dceb2af30506c3340a
drwxr-xr-x root/root 0 2022-07-14 08:28 ./
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/debug/.build-id/2a/
-rw-r--r-- root/root 84760 2022-07-14 08:28 ./usr/lib/debug/.build-id/2a/2232a5823b20c7af0361dceb2af30506c3340a.debug
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-07-14 08:28 ./usr/share/doc/fastahack-dbgsym -> fastahack
fastahack_1.0.0+dfsg-10_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 12100 bytes: control archive=1100 bytes.
1355 bytes, 29 lines control
331 bytes, 5 lines md5sums
Package: fastahack
Source: libfastahack
Version: 1.0.0+dfsg-10
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 35
Depends: libc6 (>= 2.4), libdisorder0 (>= 0.0.2), libfastahack0 (>= 1.0.0+dfsg), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
Breaks: libfastahack0 (<< 1.0.0+dfsg-4)
Replaces: libfastahack0 (<< 1.0.0+dfsg-4)
Section: science
Priority: optional
Homepage: https://github.com/ekg/fastahack
Description: utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
drwxr-xr-x root/root 0 2022-07-14 08:28 ./
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/bin/
-rwxr-xr-x root/root 18024 2022-07-14 08:28 ./usr/bin/fastahack
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/doc/fastahack/
-rw-r--r-- root/root 2958 2019-09-04 06:16 ./usr/share/doc/fastahack/README
-rw-r--r-- root/root 1656 2022-07-14 08:28 ./usr/share/doc/fastahack/changelog.Debian.gz
-rw-r--r-- root/root 1448 2022-07-14 08:28 ./usr/share/doc/fastahack/copyright
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/man/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/man/man1/
-rw-r--r-- root/root 635 2022-07-14 08:28 ./usr/share/man/man1/fastahack.1.gz
libfastahack-dev_1.0.0+dfsg-10_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 26304 bytes: control archive=1212 bytes.
1327 bytes, 31 lines control
593 bytes, 8 lines md5sums
Package: libfastahack-dev
Source: libfastahack
Version: 1.0.0+dfsg-10
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 100
Depends: libfastahack0 (= 1.0.0+dfsg-10)
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/ekg/fastahack
Description: library for indexing and sequence extraction from FASTA files (devel)
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
.
This is the development package containing the statically linked
library and the header files.
drwxr-xr-x root/root 0 2022-07-14 08:28 ./
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/include/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/include/fastahack/
-rw-r--r-- root/root 2823 2022-07-14 08:28 ./usr/include/fastahack/Fasta.h
-rw-r--r-- root/root 412 2022-07-14 08:28 ./usr/include/fastahack/LargeFileSupport.h
-rw-r--r-- root/root 1609 2022-07-14 08:28 ./usr/include/fastahack/Region.h
-rw-r--r-- root/root 781 2022-07-14 08:28 ./usr/include/fastahack/split.h
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 77120 2022-07-14 08:28 ./usr/lib/arm-linux-gnueabihf/libfastahack.a
lrwxrwxrwx root/root 0 2022-07-14 08:28 ./usr/lib/arm-linux-gnueabihf/libfastahack.so -> libfastahack.so.0.0.0
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 264 2022-07-14 08:28 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libfastahack.pc
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/doc/libfastahack-dev/
-rw-r--r-- root/root 1656 2022-07-14 08:28 ./usr/share/doc/libfastahack-dev/changelog.Debian.gz
-rw-r--r-- root/root 1448 2022-07-14 08:28 ./usr/share/doc/libfastahack-dev/copyright
libfastahack0-dbgsym_1.0.0+dfsg-10_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 275688 bytes: control archive=560 bytes.
422 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libfastahack0-dbgsym
Source: libfastahack
Version: 1.0.0+dfsg-10
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 290
Depends: libfastahack0 (= 1.0.0+dfsg-10)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libfastahack0
Build-Ids: 507ecc86ed931bc5d7193b1e5257f99e3df2d7d7
drwxr-xr-x root/root 0 2022-07-14 08:28 ./
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/debug/.build-id/50/
-rw-r--r-- root/root 286468 2022-07-14 08:28 ./usr/lib/debug/.build-id/50/7ecc86ed931bc5d7193b1e5257f99e3df2d7d7.debug
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-07-14 08:28 ./usr/share/doc/libfastahack0-dbgsym -> libfastahack0
libfastahack0_1.0.0+dfsg-10_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 23924 bytes: control archive=1152 bytes.
1288 bytes, 30 lines control
238 bytes, 3 lines md5sums
45 bytes, 1 lines shlibs
65 bytes, 2 lines triggers
Package: libfastahack0
Source: libfastahack
Version: 1.0.0+dfsg-10
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 69
Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.5), libstdc++6 (>= 11)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/ekg/fastahack
Description: library for indexing and sequence extraction from FASTA files (lib)
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
.
This package contains the dynamic library.
drwxr-xr-x root/root 0 2022-07-14 08:28 ./
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2022-07-14 08:28 ./usr/lib/arm-linux-gnueabihf/libfastahack.so.0 -> libfastahack.so.0.0.0
-rw-r--r-- root/root 54632 2022-07-14 08:28 ./usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-07-14 08:28 ./usr/share/doc/libfastahack0/
-rw-r--r-- root/root 1656 2022-07-14 08:28 ./usr/share/doc/libfastahack0/changelog.Debian.gz
-rw-r--r-- root/root 1448 2022-07-14 08:28 ./usr/share/doc/libfastahack0/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 11740
Build-Time: 96
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 128
Job: libfastahack_1.0.0+dfsg-10
Machine Architecture: armhf
Package: libfastahack
Package-Time: 247
Source-Version: 1.0.0+dfsg-10
Space: 11740
Status: successful
Version: 1.0.0+dfsg-10
--------------------------------------------------------------------------------
Finished at 2022-07-16T05:15:26Z
Build needed 00:04:07, 11740k disk space