libfastahack →
0.0+20160702-1 →
armhf → 2016-07-12 11:13:17
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-02
+==============================================================================+
| libfastahack 0.0+20160702-1 (armhf) 12 Jul 2016 11:04 |
+==============================================================================+
Package: libfastahack
Version: 0.0+20160702-1
Source Version: 0.0+20160702-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/libfastahack-FxGd7Y/libfastahack-0.0+20160702' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libfastahack-FxGd7Y' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-5316b7ba-3185-4ded-81b1-caed09e051b6' with '<<CHROOT>>'
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| Update chroot |
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Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9143 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.1 MB]
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| Fetch source files |
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Check APT
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NOTICE: 'libfastahack' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/libfastahack.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/libfastahack.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 15.8 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main libfastahack 0.0+20160702-1 (dsc) [2156 B]
Get:2 http://172.17.0.1/private stretch-staging/main libfastahack 0.0+20160702-1 (tar) [8760 B]
Get:3 http://172.17.0.1/private stretch-staging/main libfastahack 0.0+20160702-1 (diff) [4884 B]
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Check architectures
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Check dependencies
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-CvZAAq/apt_archive/sbuild-build-depends-core-dummy.deb'.
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| Install core build dependencies (apt-based resolver) |
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Installing build dependencies
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The following NEW packages will be installed:
sbuild-build-depends-core-dummy
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Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, d-shlibs, libdisorder-dev
dpkg-deb: building package 'sbuild-build-depends-libfastahack-dummy' in '/<<BUILDDIR>>/resolver-GuX1pH/apt_archive/sbuild-build-depends-libfastahack-dummy.deb'.
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+------------------------------------------------------------------------------+
| Install libfastahack build dependencies (apt-based resolver) |
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Installing build dependencies
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Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdisorder-dev
libdisorder0 libffi6 libfile-stripnondeterminism-perl libglib2.0-0 libicu55
libmagic1 libpipeline1 libsigsegv2 libtool libunistring0 libxml2 m4 man-db
po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdisorder-dev
libdisorder0 libffi6 libfile-stripnondeterminism-perl libglib2.0-0 libicu55
libmagic1 libpipeline1 libsigsegv2 libtool libunistring0 libxml2 m4 man-db
po-debconf sbuild-build-depends-libfastahack-dummy
0 upgraded, 33 newly installed, 0 to remove and 9 not upgraded.
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Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
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Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
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Get:10 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
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Get:14 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
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Get:17 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.019-1 [12.2 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.019-1 [7352 B]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160403 [800 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libdisorder0 armhf 0.0.2-1 [4328 B]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libdisorder-dev armhf 0.0.2-1 [3838 B]
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+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.7 g++-5_5.4.0-4 gcc-5_5.4.0-4 libc6-dev_2.22-11 libstdc++-4.9-dev_4.9.3-14 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.115 apt_1.2.14 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-15 binutils_2.26.1-1 bsdmainutils_9.0.10 bsdutils_1:2.28-5 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-3 cpp-5_5.4.0-4 d-shlibs_0.75 dash_0.5.8-2.2 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160403 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.019-1 diffutils_1:3.3-3 dmsetup_2:1.02.127-1 dpkg_1.18.7 dpkg-dev_1.18.7 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1 file_1:5.28-2 findutils_4.6.0+git+20160517-5 fuse2fs_1.43.1-1 g++_4:5.3.1-3 g++-5_5.4.0-4 gcc_4:5.3.1-3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5_5.4.0-4 gcc-5-base_5.4.0-4 gcc-6-base_6.1.1-1+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.17 init_1.36 init-system-helpers_1.36 initscripts_2.88dsf-59.7 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10.95-4 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.2.14 libarchive-zip-perl_1.57-1 libasan1_4.9.3-14 libasan2_5.4.0-4 libatomic1_6.1.1-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.5.2-1+rpi1 libaudit1_1:2.5.2-1+rpi1 libblkid1_2.28-5 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.22-11 libc-dev-bin_2.22-11 libc6_2.22-11 libc6-dev_2.22-11 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-1+rpi1 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.213 libdevmapper1.02.1_2:1.02.127-1 libdisorder-dev_0.0.2-1 libdisorder0_0.0.2-1 libdpkg-perl_1.18.7 libdrm2_2.4.68-1 libfakeroot_1.21-1 libfdisk1_2.28-5 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.019-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-4.9-dev_4.9.3-14 libgcc-5-dev_5.4.0-4 libgcc1_1:6.1.1-1+rpi1 libgcrypt20_1.7.1-2 libgdbm3_1.8.3-14 libglib2.0-0_2.48.1-1 libgmp10_2:6.1.1+dfsg-1 libgomp1_6.1.1-1+rpi1 libgpg-error0_1.23-1 libicu55_55.1-7 libidn11_1.32-3.1 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.28-2 libmount1_2.28-5 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160319-2 libncursesw5_6.0+20160319-2 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps3_2:3.3.9-9 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-3 libsmartcols1_2.28-5 libss2_1.43.1-1 libstdc++-4.9-dev_4.9.3-14 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 libsystemd0_230-5 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-2 libtool_2.4.6-0.1 libubsan0_6.1.1-1+rpi1 libudev1_230-5 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5 libxml2_2.9.3+dfsg1-1.2 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160601+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.06-1 mawk_1.3.3-17 mount_2.28-5 multiarch-support_2.22-11 nano_2.6.0-1 ncurses-base_6.0+20160319-2 ncurses-bin_6.0+20160319-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 po-debconf_1.0.19 procps_2:3.3.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libfastahack-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_230-5 systemd-sysv_230-5 sysv-rc_2.88dsf-59.7 sysvinit-utils_2.88dsf-59.7 tar_1.29-1+rpi1 tzdata_2016e-1 udev_230-5 util-linux_2.28-5 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Jul 5 13:26:33 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./libfastahack_0.0+20160702-1.dsc
dpkg-source: info: extracting libfastahack in libfastahack-0.0+20160702
dpkg-source: info: unpacking libfastahack_0.0+20160702.orig.tar.xz
dpkg-source: info: unpacking libfastahack_0.0+20160702-1.debian.tar.xz
dpkg-source: info: applying autoconf.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-5316b7ba-3185-4ded-81b1-caed09e051b6
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libfastahack
dpkg-buildpackage: info: source version 0.0+20160702-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build libfastahack-0.0+20160702
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with autoreconf
dh_testdir
dh_auto_clean
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch --with autoreconf
dh_testdir -a
dh_update_autotools_config -a
dh_autoreconf -a
aclocal: warning: couldn't open directory 'config': No such file or directory
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'.
libtoolize: copying file 'config/libtool.m4'
libtoolize: copying file 'config/ltoptions.m4'
libtoolize: copying file 'config/ltsugar.m4'
libtoolize: copying file 'config/ltversion.m4'
libtoolize: copying file 'config/lt~obsolete.m4'
libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am.
configure.ac:30: installing 'config/compile'
configure.ac:30: installing 'config/config.guess'
configure.ac:30: installing 'config/config.sub'
configure.ac:18: installing 'config/install-sh'
configure.ac:18: installing 'config/missing'
Makefile.am: installing 'config/depcomp'
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '104' is supported by ustar format... yes
checking whether GID '109' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether ln -s works... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
./configure: line 15957: AX_CXXFLAGS: command not found
checking for ANSI C header files... (cached) yes
checking for stdlib.h... (cached) yes
checking whether make sets $(MAKE)... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating libfastahack.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
dh_auto_build -a
make -j1
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
make all-am
make[2]: Entering directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libfastahack_la-Fasta.lo `test -f 'Fasta.cpp' || echo './'`Fasta.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c Fasta.cpp -fPIC -DPIC -o .libs/libfastahack_la-Fasta.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c Fasta.cpp -o libfastahack_la-Fasta.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libfastahack_la-split.lo `test -f 'split.cpp' || echo './'`split.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c split.cpp -fPIC -DPIC -o .libs/libfastahack_la-split.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c split.cpp -o libfastahack_la-split.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libfastahack.la -rpath /usr/lib/arm-linux-gnueabihf libfastahack_la-Fasta.lo libfastahack_la-split.lo
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/5/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/5/crtbeginS.o .libs/libfastahack_la-Fasta.o .libs/libfastahack_la-split.o -L/usr/lib/gcc/arm-linux-gnueabihf/5 -L/usr/lib/gcc/arm-linux-gnueabihf/5/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/5/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/5/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/5/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libfastahack.so.0 -o .libs/libfastahack.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libfastahack.so.0" && ln -s "libfastahack.so.0.0.0" "libfastahack.so.0")
libtool: link: (cd ".libs" && rm -f "libfastahack.so" && ln -s "libfastahack.so.0.0.0" "libfastahack.so")
libtool: link: ar cru .libs/libfastahack.a libfastahack_la-Fasta.o libfastahack_la-split.o
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libfastahack.a
libtool: link: ( cd ".libs" && rm -f "libfastahack.la" && ln -s "../libfastahack.la" "libfastahack.la" )
g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o FastaHack.o FastaHack.cpp
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o -lfastahack -ldisorder
libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fastahack FastaHack.o /<<BUILDDIR>>/libfastahack-0.0+20160702/.libs/libfastahack.so -ldisorder
make[2]: Leaving directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
dh_auto_test -a
make -j1 check VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
fakeroot debian/rules binary-arch
dh binary-arch --with autoreconf
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<BUILDDIR>>/libfastahack-0.0\+20160702/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
make[2]: Entering directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
/bin/mkdir -p '/<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libfastahack.la '/<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libfastahack.so.0.0.0 /<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0
libtool: install: (cd /<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libfastahack.so.0.0.0 libfastahack.so.0 || { rm -f libfastahack.so.0 && ln -s libfastahack.so.0.0.0 libfastahack.so.0; }; })
libtool: install: (cd /<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libfastahack.so.0.0.0 libfastahack.so || { rm -f libfastahack.so && ln -s libfastahack.so.0.0.0 libfastahack.so; }; })
libtool: install: /usr/bin/install -c .libs/libfastahack.lai /<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.la
libtool: install: /usr/bin/install -c .libs/libfastahack.a /<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: install: chmod 644 /<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: install: ranlib /<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c fastahack '/<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/bin'
libtool: warning: '/<<BUILDDIR>>/libfastahack-0.0+20160702/libfastahack.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/fastahack /<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/bin/fastahack
/bin/mkdir -p '/<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/include/fastahack'
/usr/bin/install -c -m 644 Fasta.h LargeFileSupport.h Region.h '/<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/include/fastahack'
/bin/mkdir -p '/<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 libfastahack.pc '/<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
make[2]: Leaving directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \
debian/tmp/usr/lib/*/libfastahack.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/libfastahack-0.0+20160702/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
PKGDEV=libfastahack-dev
PKGSHL=libfastahack0
install -d -m 755 debian/libfastahack-dev/usr/include
mv debian/tmp/usr/include/fastahack debian/libfastahack-dev/usr/include
install -d -m 755 debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libfastahack0/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0 found in none of the libraries
dpkg-shlibdeps: warning: debian/fastahack/usr/bin/fastahack contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/fastahack/usr/bin/fastahack was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: Depends field of package libfastahack-dev: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libfastahack0-dbgsym' in '../libfastahack0-dbgsym_0.0+20160702-1_armhf.deb'.
dpkg-deb: building package 'fastahack-dbgsym' in '../fastahack-dbgsym_0.0+20160702-1_armhf.deb'.
dpkg-deb: building package 'libfastahack-dev' in '../libfastahack-dev_0.0+20160702-1_armhf.deb'.
dpkg-deb: building package 'fastahack' in '../fastahack_0.0+20160702-1_armhf.deb'.
dpkg-deb: building package 'libfastahack0' in '../libfastahack0_0.0+20160702-1_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libfastahack_0.0+20160702-1_armhf.changes
dpkg-genchanges: warning: package libfastahack0-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package fastahack-dbgsym listed in files list but not in control info
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build libfastahack-0.0+20160702
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160712-1112
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libfastahack_0.0+20160702-1_armhf.changes:
------------------------------------------
Format: 1.8
Date: Tue, 05 Jul 2016 15:25:05 +0200
Source: libfastahack
Binary: libfastahack0 libfastahack-dev fastahack
Architecture: armhf
Version: 0.0+20160702-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
fastahack - utility for indexing and sequence extraction from FASTA files
libfastahack-dev - library for indexing and sequence extraction from FASTA files (de
libfastahack0 - library for indexing and sequence extraction from FASTA files (li
Closes: 827978
Changes:
libfastahack (0.0+20160702-1) unstable; urgency=medium
.
* Initial release (Closes: #827978)
Checksums-Sha1:
01891cff2fed19494f34aac9ca7a05f93e4e0d3e 52528 fastahack-dbgsym_0.0+20160702-1_armhf.deb
4766341d271d3d864a991ce99df25a829f9233b4 9248 fastahack_0.0+20160702-1_armhf.deb
6ab3470d846fa605c4342798bfe903187ddd4a4d 21480 libfastahack-dev_0.0+20160702-1_armhf.deb
bffc057ec9720f7f544f7d141a71dd1b413c64e4 139768 libfastahack0-dbgsym_0.0+20160702-1_armhf.deb
b8eed3c4b04ce5429efb8d2d50f57f8ea533d002 20622 libfastahack0_0.0+20160702-1_armhf.deb
Checksums-Sha256:
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c7c28e9cb1f4283bc955a74dde35e8d105037ec7e5a1ce19293531f912a82788 9248 fastahack_0.0+20160702-1_armhf.deb
ee0f50f4bc5c06d76dff463733a464758f5b4114f02f9c0c8b6ed1d3364d0351 21480 libfastahack-dev_0.0+20160702-1_armhf.deb
86e0733b256529d5442079fc27fd8547d4a1683ae5a852077ecc2a607feb7082 139768 libfastahack0-dbgsym_0.0+20160702-1_armhf.deb
b16b9a32483163c21a5980bca2301f57c10b156e483a1f017c8dea64730774b0 20622 libfastahack0_0.0+20160702-1_armhf.deb
Files:
bf94f7aa84d7ad27ce34083f4ed57d50 52528 debug extra fastahack-dbgsym_0.0+20160702-1_armhf.deb
7601e2ca31a42dbeb03f8efaa89e80fc 9248 science optional fastahack_0.0+20160702-1_armhf.deb
ad1946cb2a6c473e541955c4792cc8db 21480 libdevel optional libfastahack-dev_0.0+20160702-1_armhf.deb
e4b3656e53c22439515422467fb14d89 139768 debug extra libfastahack0-dbgsym_0.0+20160702-1_armhf.deb
db7483520c152b833e77ce87a45f2335 20622 libs optional libfastahack0_0.0+20160702-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
fastahack-dbgsym_0.0+20160702-1_armhf.deb
-----------------------------------------
new debian package, version 2.0.
size 52528 bytes: control archive=499 bytes.
434 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: fastahack-dbgsym
Source: libfastahack
Version: 0.0+20160702-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 67
Depends: fastahack (= 0.0+20160702-1)
Section: debug
Priority: extra
Homepage: https://github.com/ekg/fastahack
Description: Debug symbols for fastahack
Auto-Built-Package: debug-symbols
Build-Ids: fb6a789978146e3f82f29ca7242e6b6556f1d433
drwxr-xr-x root/root 0 2016-07-12 11:12 ./
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/debug/.build-id/fb/
-rw-r--r-- root/root 57664 2016-07-12 11:11 ./usr/lib/debug/.build-id/fb/6a789978146e3f82f29ca7242e6b6556f1d433.debug
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-07-12 11:11 ./usr/share/doc/fastahack-dbgsym -> fastahack
fastahack_0.0+20160702-1_armhf.deb
----------------------------------
new debian package, version 2.0.
size 9248 bytes: control archive=963 bytes.
1258 bytes, 27 lines control
263 bytes, 4 lines md5sums
Package: fastahack
Source: libfastahack
Version: 0.0+20160702-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 31
Depends: libc6 (>= 2.4), libdisorder0 (>= 0.0.2), libfastahack0, libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Section: science
Priority: optional
Homepage: https://github.com/ekg/fastahack
Description: utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
drwxr-xr-x root/root 0 2016-07-12 11:11 ./
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/bin/
-rwxr-xr-x root/root 18016 2016-07-12 11:11 ./usr/bin/fastahack
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/doc/fastahack/
-rw-r--r-- root/root 2958 2012-11-16 00:52 ./usr/share/doc/fastahack/README
-rw-r--r-- root/root 162 2016-07-05 13:25 ./usr/share/doc/fastahack/changelog.Debian.gz
-rw-r--r-- root/root 1359 2016-07-05 13:25 ./usr/share/doc/fastahack/copyright
libfastahack-dev_0.0+20160702-1_armhf.deb
-----------------------------------------
new debian package, version 2.0.
size 21480 bytes: control archive=1096 bytes.
1311 bytes, 30 lines control
529 bytes, 7 lines md5sums
Package: libfastahack-dev
Source: libfastahack
Version: 0.0+20160702-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 91
Depends: libfastahack0 (= 0.0+20160702-1)
Section: libdevel
Priority: optional
Homepage: https://github.com/ekg/fastahack
Description: library for indexing and sequence extraction from FASTA files (devel)
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
.
This is the development package containing the statically linked
library and the header files.
drwxr-xr-x root/root 0 2016-07-12 11:11 ./
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/include/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/include/fastahack/
-rw-r--r-- root/root 2823 2016-07-12 11:11 ./usr/include/fastahack/Fasta.h
-rw-r--r-- root/root 412 2016-07-12 11:11 ./usr/include/fastahack/LargeFileSupport.h
-rw-r--r-- root/root 1609 2016-07-12 11:11 ./usr/include/fastahack/Region.h
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 70632 2016-07-12 11:11 ./usr/lib/arm-linux-gnueabihf/libfastahack.a
lrwxrwxrwx root/root 0 2016-07-12 11:11 ./usr/lib/arm-linux-gnueabihf/libfastahack.so -> libfastahack.so.0.0.0
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 264 2016-07-12 11:11 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libfastahack.pc
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/doc/libfastahack-dev/
-rw-r--r-- root/root 162 2016-07-05 13:25 ./usr/share/doc/libfastahack-dev/changelog.Debian.gz
-rw-r--r-- root/root 1359 2016-07-05 13:25 ./usr/share/doc/libfastahack-dev/copyright
libfastahack0-dbgsym_0.0+20160702-1_armhf.deb
---------------------------------------------
new debian package, version 2.0.
size 139768 bytes: control archive=499 bytes.
447 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libfastahack0-dbgsym
Source: libfastahack
Version: 0.0+20160702-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 158
Depends: libfastahack0 (= 0.0+20160702-1)
Section: debug
Priority: extra
Homepage: https://github.com/ekg/fastahack
Description: Debug symbols for libfastahack0
Auto-Built-Package: debug-symbols
Build-Ids: 20009bb299165b13cfc630933c6ae0359865189d
drwxr-xr-x root/root 0 2016-07-12 11:11 ./
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/debug/.build-id/20/
-rw-r--r-- root/root 151416 2016-07-12 11:11 ./usr/lib/debug/.build-id/20/009bb299165b13cfc630933c6ae0359865189d.debug
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-07-12 11:11 ./usr/share/doc/libfastahack0-dbgsym -> libfastahack0
libfastahack0_0.0+20160702-1_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 20622 bytes: control archive=1078 bytes.
1272 bytes, 29 lines control
306 bytes, 4 lines md5sums
29 bytes, 1 lines shlibs
60 bytes, 2 lines triggers
Package: libfastahack0
Source: libfastahack
Version: 0.0+20160702-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 64
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Section: libs
Priority: optional
Homepage: https://github.com/ekg/fastahack
Description: library for indexing and sequence extraction from FASTA files (lib)
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
.
This package contains the dynamic library.
drwxr-xr-x root/root 0 2016-07-12 11:11 ./
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2016-07-12 11:11 ./usr/lib/arm-linux-gnueabihf/libfastahack.so.0 -> libfastahack.so.0.0.0
-rw-r--r-- root/root 46484 2016-07-12 11:11 ./usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/doc/libfastahack0/
-rw-r--r-- root/root 162 2016-07-05 13:25 ./usr/share/doc/libfastahack0/changelog.Debian.gz
-rw-r--r-- root/root 1359 2016-07-05 13:25 ./usr/share/doc/libfastahack0/copyright
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/man/
drwxr-xr-x root/root 0 2016-07-12 11:11 ./usr/share/man/man1/
-rw-r--r-- root/root 1043 2016-07-12 11:11 ./usr/share/man/man1/fastahack.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 8396
Build-Time: 181
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 201
Job: libfastahack_0.0+20160702-1
Machine Architecture: armhf
Package: libfastahack
Package-Time: 438
Source-Version: 0.0+20160702-1
Space: 8396
Status: successful
Version: 0.0+20160702-1
--------------------------------------------------------------------------------
Finished at 20160712-1112
Build needed 00:07:18, 8396k disc space