libbpp-seq-omics →
2.4.1-5 →
armhf → 2020-07-28 05:22:57
sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on test2019
+==============================================================================+
| libbpp-seq-omics 2.4.1-5 (armhf) Tue, 28 Jul 2020 05:03:50 +0000 |
+==============================================================================+
Package: libbpp-seq-omics
Version: 2.4.1-5
Source Version: 2.4.1-5
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-a3969d25-012f-439b-880c-8197a3baadbb' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
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Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libbpp-seq-omics' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libbpp-seq-omics.git
Please use:
git clone https://salsa.debian.org/med-team/libbpp-seq-omics.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 127 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main libbpp-seq-omics 2.4.1-5 (dsc) [2221 B]
Get:2 http://172.17.0.1/private bullseye-staging/main libbpp-seq-omics 2.4.1-5 (tar) [107 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main libbpp-seq-omics 2.4.1-5 (diff) [17.0 kB]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-T4IhsV/libbpp-seq-omics-2.4.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-T4IhsV' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-s4iqka/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-s4iqka/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-s4iqka/gpg/trustdb.gpg: trustdb created
gpg: key E70254B6505CF8F7: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key E70254B6505CF8F7: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key E70254B6505CF8F7: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-s4iqka/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-s4iqka/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-s4iqka/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-s4iqka/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-s4iqka/apt_archive ./ Sources [349 B]
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Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-s4iqka/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-s4iqka/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils dmsetup libargon2-1 libcryptsetup12 libdevmapper1.02.1
libjson-c4 libpam-cap libssl1.1
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 9 not upgraded.
Need to get 852 B of archives.
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Get:1 copy:/<<BUILDDIR>>/resolver-s4iqka/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs (>= 0.82), libbpp-seq-dev (>= 2.4.1)
Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs (>= 0.82), libbpp-seq-dev (>= 2.4.1)
dpkg-deb: building package 'sbuild-build-depends-libbpp-seq-omics-dummy' in '/<<BUILDDIR>>/resolver-s4iqka/apt_archive/sbuild-build-depends-libbpp-seq-omics-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libbpp-seq-omics-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-s4iqka/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-s4iqka/apt_archive ./ Release [963 B]
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Ign:3 copy:/<<BUILDDIR>>/resolver-s4iqka/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-s4iqka/apt_archive ./ Sources [529 B]
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W: copy:///<<BUILDDIR>>/resolver-s4iqka/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-s4iqka/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install libbpp-seq-omics build dependencies (apt-based resolver)
----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dmsetup libargon2-1 libcryptsetup12 libdevmapper1.02.1 libjson-c4 libpam-cap
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev cmake cmake-data d-shlibs
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbrotli1
libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu67
libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5
librhash0 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl libtool
libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libltdl-dev
libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev cmake cmake-data d-shlibs
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbrotli1
libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu67
libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5
librhash0 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl libtool
libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps
sbuild-build-depends-libbpp-seq-omics-dummy sensible-utils
0 upgraded, 59 newly installed, 0 to remove and 9 not upgraded.
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Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
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Get:53 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
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Get:56 http://172.17.0.1/private bullseye-staging/main armhf libbpp-core4 armhf 2.4.1-4 [487 kB]
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Get:58 http://172.17.0.1/private bullseye-staging/main armhf libbpp-seq12 armhf 2.4.1-4 [413 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libbpp-seq-dev armhf 2.4.1-4 [693 kB]
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update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Processing triggers for libc-bin (2.31-1+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ armhf (armv7l)
Toolchain package versions: binutils_2.34.90.20200706-1+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-14+rpi1 gcc-9_9.3.0-14+rpi1 libc6-dev_2.31-1+rpi1 libstdc++-9-dev_9.3.0-14+rpi1 libstdc++6_10.1.0-4+rpi1 linux-libc-dev_5.7.6-1+rpi1
Package versions: adduser_3.118 apt_2.1.7 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34.90.20200706-1+rpi1 binutils-arm-linux-gnueabihf_2.34.90.20200706-1+rpi1 binutils-common_2.34.90.20200706-1+rpi1 bsdextrautils_2.35.2-7 bsdutils_1:2.35.2-7 build-essential_12.8 bzip2_1.0.8-3 cmake_3.16.3-3+rpi1 cmake-data_3.16.3-3+rpi1 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-14+rpi1 d-shlibs_0.93 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dmsetup_2:1.02.167-1+b2 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.2-7 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-14+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10.1.0-4+rpi1 gcc-9_9.3.0-14+rpi1 gcc-9-base_9.3.0-14+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libapt-pkg6.0_2.1.7 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-1+b1 libargon2-1_0~20171227-0.2 libasan5_9.3.0-14+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.1.0-4+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34.90.20200706-1+rpi1 libblkid1_2.35.2-7 libbpp-core-dev_2.4.1-4 libbpp-core4_2.4.1-4 libbpp-seq-dev_2.4.1-4 libbpp-seq12_2.4.1-4 libbrotli1_1.0.7-7 libbz2-1.0_1.0.8-3 libc-bin_2.31-1+rpi1 libc-dev-bin_2.31-1+rpi1 libc6_2.31-1+rpi1 libc6-dev_2.31-1+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.36-1 libcap2-bin_1:2.36-1 libcc1-0_10.1.0-4+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libcryptsetup12_2:2.3.3-1 libctf-nobfd0_2.34.90.20200706-1+rpi1 libctf0_2.34.90.20200706-1+rpi1 libcurl4_7.68.0-1+b1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2 libdevmapper1.02.1_2:1.02.167-1+b2 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.2-7 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-9-dev_9.3.0-14+rpi1 libgcc-s1_10.1.0-4+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.1.0-4+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhogweed6_3.6-2 libicu67_67.1-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjson-c4_0.13.1+dfsg-9 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10 libkrb5support0_1.17-10 libksba8_1.4.0-2 libldap-2.4-2_2.4.50+dfsg-1+b1 libldap-common_2.4.50+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.2-7 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-2 libnpth0_1.6-2 libp11-kit0_0.23.20-1 libpam-cap_1:2.36-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1.1 libreadline7_7.0-5 libreadline8_8.0-4 librhash0_1.4.0-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsmartcols1_2.35.2-7 libsqlite3-0_3.32.3-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-14+rpi1 libstdc++6_10.1.0-4+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.6-2+rpi1+b1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_245.6-2+rpi1+b1 libunistring2_0.9.10-4 libuuid1_2.35.2-7 libuv1_1.38.0-3 libxml2_2.9.10+dfsg-5+b1 libzstd1_1.4.5+dfsg-3+rpi1 linux-libc-dev_5.7.6-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.35.2-7 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 procps_2:3.3.16-5 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-seq-omics-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.35.2-7 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Jul 23 11:10:44 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libbpp-seq-omics_2.4.1-5.dsc
dpkg-source: info: extracting libbpp-seq-omics in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libbpp-seq-omics_2.4.1.orig.tar.gz
dpkg-source: info: unpacking libbpp-seq-omics_2.4.1-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying unforce-cxxflags.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=d540cc9aba1e46398de3fa2f71b5e534
JOURNAL_STREAM=8:18935
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=116
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-a3969d25-012f-439b-880c-8197a3baadbb
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_ID=c95592
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libbpp-seq-omics
dpkg-buildpackage: info: source version 2.4.1-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The CXX compiler identification is GNU 9.3.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- bpp-core 4.1.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0
-- includes: /usr/include
-- bpp-seq 12.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0
-- includes: /usr/include
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/depend
make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake --color=
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Scanning dependencies of target bpp-seq-omics-shared
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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[ 2%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp
[ 6%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o
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[ 7%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp
[ 8%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp
[ 9%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp
[ 10%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.cpp
[ 12%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/SequenceFeature.cpp
[ 13%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp
[ 14%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp
[ 15%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp
[ 17%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.cpp
[ 18%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp
[ 19%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp
[ 20%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp
[ 21%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp
[ 23%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp
[ 24%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp
[ 25%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp
[ 26%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp
[ 28%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp
[ 29%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp
[ 30%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp
[ 31%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp
[ 32%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp
[ 34%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp
[ 35%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp
[ 36%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp
[ 37%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp
[ 39%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp
[ 40%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp
[ 41%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp
[ 42%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp
[ 43%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp
[ 46%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp
[ 52%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp
[ 53%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp
[ 54%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o
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[ 56%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp
[ 57%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp
[ 58%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp
[ 59%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp
[ 60%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp
[ 62%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp
[ 63%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp
[ 64%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp
[ 65%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp
[ 67%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp
[ 68%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp
[ 69%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp
[ 70%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp
[ 71%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp
[ 73%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp
[ 74%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp
[ 75%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp
[ 76%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp
[ 78%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp
[ 79%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp
[ 80%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp
[ 81%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp
[ 82%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp
[ 84%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp
[ 85%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp
[ 86%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp
[ 87%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp
[ 89%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp
[ 90%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp
[ 91%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp
[ 92%] Linking CXX static library libbpp-seq-omics.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-omics-static.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-static.dir/link.txt --verbose=1
/usr/bin/ar qc libbpp-seq-omics.a CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o
/usr/bin/ranlib libbpp-seq-omics.a
[ 93%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 93%] Built target bpp-seq-omics-static
[ 95%] Linking CXX shared library libbpp-seq-omics.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-shared.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq-omics.so.3 -o libbpp-seq-omics.so.3.0.0 CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq-omics.so.3.0.0 libbpp-seq-omics.so.3 libbpp-seq-omics.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_gff.dir/DependInfo.cmake --color=
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color=
Scanning dependencies of target test_fastq
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make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build
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[ 97%] Building CXX object test/CMakeFiles/test_gff.dir/test_gff.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_fastq.dir/test_fastq.cpp.o -c /<<PKGBUILDDIR>>/test/test_fastq.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_gff.dir/test_gff.cpp.o -c /<<PKGBUILDDIR>>/test/test_gff.cpp
[ 98%] Linking CXX executable test_gff
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gff.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_gff.dir/test_gff.cpp.o -o test_gff -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq-omics.so.3.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target test_gff
[100%] Linking CXX executable test_fastq
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fastq.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_fastq.dir/test_fastq.cpp.o -o test_fastq -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq-omics.so.3.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0
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dh_auto_test -a
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make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
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make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
create-stamp debian/debhelper-build-stamp
dh_testroot -a
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cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Bed
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/FeatureReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Gff
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeature.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Fastq.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/IterationListener.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafBlock.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafParser.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafSequence.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafStatistics.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TableOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
--> libbpp-core-dev package exists.
--> libbpp-seq-dev package exists.
set -e
install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbpp-seq-omics3/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3 debian/libbpp-seq-omics3/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 debian/libbpp-seq-omics3/usr/lib/arm-linux-gnueabihf
PKGDEV=libbpp-seq-omics-dev
PKGSHL=libbpp-seq-omics3
install -d -m 755 debian/libbpp-seq-omics-dev/usr/include
mv debian/tmp/usr/include/Bpp debian/libbpp-seq-omics-dev/usr/include
install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-seq-omics3/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package libbpp-seq-omics-dev: substitution variable ${devlibs:Depends} unused, but is defined
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libbpp-seq-omics-dev' in '../libbpp-seq-omics-dev_2.4.1-5_armhf.deb'.
dpkg-deb: building package 'libbpp-seq-omics3' in '../libbpp-seq-omics3_2.4.1-5_armhf.deb'.
dpkg-deb: building package 'libbpp-seq-omics3-dbgsym' in '../libbpp-seq-omics3-dbgsym_2.4.1-5_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian 2019 test autobuilder <root@raspbian.org> >../libbpp-seq-omics_2.4.1-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-07-28T05:22:38Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libbpp-seq-omics_2.4.1-5_armhf.changes:
---------------------------------------
Format: 1.8
Date: Thu, 23 Jul 2020 12:19:17 +0200
Source: libbpp-seq-omics
Binary: libbpp-seq-omics-dev libbpp-seq-omics3 libbpp-seq-omics3-dbgsym
Architecture: armhf
Version: 2.4.1-5
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian 2019 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libbpp-seq-omics-dev - Bio++ Sequence library: genomics components (development files)
libbpp-seq-omics3 - Bio++ Sequence library: genomics components
Closes: 957431
Changes:
libbpp-seq-omics (2.4.1-5) unstable; urgency=medium
.
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Refer to specific version of license GPL-2+.
* Update symbols for gcc-10
Closes: #957431
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Files:
9a6601db1b134f15e690990f74232b97 378248 libdevel optional libbpp-seq-omics-dev_2.4.1-5_armhf.deb
7d08a63ec62ea29b0cde67dca807734b 5222508 debug optional libbpp-seq-omics3-dbgsym_2.4.1-5_armhf.deb
d6bc45c52f849be04e2192fbff90f730 185696 libs optional libbpp-seq-omics3_2.4.1-5_armhf.deb
d6651253dc38a9387ab85fbca12f15bf 6735 science optional libbpp-seq-omics_2.4.1-5_armhf.buildinfo
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: libbpp-seq-omics
Binary: libbpp-seq-omics-dev libbpp-seq-omics3
Architecture: armhf
Version: 2.4.1-5
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Tue, 28 Jul 2020 05:22:36 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
adduser (= 3.118),
apt (= 2.1.7),
autoconf (= 2.69-11.1),
automake (= 1:1.16.2-3),
autopoint (= 0.19.8.1-10),
autotools-dev (= 20180224.1),
base-files (= 11+rpi1),
base-passwd (= 3.5.47),
bash (= 5.0-6),
binutils (= 2.34.90.20200706-1+rpi1),
binutils-arm-linux-gnueabihf (= 2.34.90.20200706-1+rpi1),
binutils-common (= 2.34.90.20200706-1+rpi1),
bsdextrautils (= 2.35.2-7),
bsdutils (= 1:2.35.2-7),
build-essential (= 12.8),
bzip2 (= 1.0.8-3),
cmake (= 3.16.3-3+rpi1),
cmake-data (= 3.16.3-3+rpi1),
coreutils (= 8.30-3),
cpp (= 4:9.2.1-3.1+rpi1),
cpp-9 (= 9.3.0-14+rpi1),
d-shlibs (= 0.93),
dash (= 0.5.10.2-7),
debconf (= 1.5.74),
debhelper (= 13.2),
debianutils (= 4.9.1),
dh-autoreconf (= 19),
dh-strip-nondeterminism (= 1.9.0-1),
diffutils (= 1:3.7-3),
dirmngr (= 2.2.20-1),
dpkg (= 1.19.7),
dpkg-dev (= 1.19.7),
dwz (= 0.13-5),
file (= 1:5.38-5),
findutils (= 4.7.0-1),
g++ (= 4:9.2.1-3.1+rpi1),
g++-9 (= 9.3.0-14+rpi1),
gcc (= 4:9.2.1-3.1+rpi1),
gcc-10-base (= 10.1.0-4+rpi1),
gcc-9 (= 9.3.0-14+rpi1),
gcc-9-base (= 9.3.0-14+rpi1),
gettext (= 0.19.8.1-10),
gettext-base (= 0.19.8.1-10),
gnupg (= 2.2.20-1),
gnupg-l10n (= 2.2.20-1),
gnupg-utils (= 2.2.20-1),
gpg (= 2.2.20-1),
gpg-agent (= 2.2.20-1),
gpg-wks-client (= 2.2.20-1),
gpg-wks-server (= 2.2.20-1),
gpgconf (= 2.2.20-1),
gpgsm (= 2.2.20-1),
gpgv (= 2.2.20-1),
grep (= 3.4-1),
groff-base (= 1.22.4-5),
gzip (= 1.10-2),
hostname (= 3.23),
init-system-helpers (= 1.58),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-8),
libapt-pkg6.0 (= 2.1.7),
libarchive-zip-perl (= 1.68-1),
libarchive13 (= 3.4.3-1+b1),
libasan5 (= 9.3.0-14+rpi1),
libassuan0 (= 2.5.3-7.1),
libatomic1 (= 10.1.0-4+rpi1),
libattr1 (= 1:2.4.48-5),
libaudit-common (= 1:2.8.5-3),
libaudit1 (= 1:2.8.5-3),
libbinutils (= 2.34.90.20200706-1+rpi1),
libblkid1 (= 2.35.2-7),
libbpp-core-dev (= 2.4.1-4),
libbpp-core4 (= 2.4.1-4),
libbpp-seq-dev (= 2.4.1-4),
libbpp-seq12 (= 2.4.1-4),
libbrotli1 (= 1.0.7-7),
libbz2-1.0 (= 1.0.8-3),
libc-bin (= 2.31-1+rpi1),
libc-dev-bin (= 2.31-1+rpi1),
libc6 (= 2.31-1+rpi1),
libc6-dev (= 2.31-1+rpi1),
libcap-ng0 (= 0.7.9-2.2),
libcc1-0 (= 10.1.0-4+rpi1),
libcom-err2 (= 1.45.6-1),
libcroco3 (= 0.6.13-1),
libcrypt-dev (= 1:4.4.16-1),
libcrypt1 (= 1:4.4.16-1),
libctf-nobfd0 (= 2.34.90.20200706-1+rpi1),
libctf0 (= 2.34.90.20200706-1+rpi1),
libcurl4 (= 7.68.0-1+b1),
libdb5.3 (= 5.3.28+dfsg1-0.6),
libdebconfclient0 (= 0.253),
libdebhelper-perl (= 13.2),
libdpkg-perl (= 1.19.7),
libelf1 (= 0.176-1.1),
libexpat1 (= 2.2.9-1),
libffi7 (= 3.3-4),
libfile-stripnondeterminism-perl (= 1.9.0-1),
libgcc-9-dev (= 9.3.0-14+rpi1),
libgcc-s1 (= 10.1.0-4+rpi1),
libgcrypt20 (= 1.8.6-2),
libgdbm-compat4 (= 1.18.1-5),
libgdbm6 (= 1.18.1-5),
libglib2.0-0 (= 2.64.4-1),
libgmp10 (= 2:6.2.0+dfsg-6),
libgnutls30 (= 3.6.14-2+b1),
libgomp1 (= 10.1.0-4+rpi1),
libgpg-error0 (= 1.38-2),
libgssapi-krb5-2 (= 1.17-10),
libhogweed6 (= 3.6-2),
libicu67 (= 67.1-3),
libidn2-0 (= 2.3.0-1),
libisl22 (= 0.22.1-1),
libjsoncpp1 (= 1.7.4-3.1),
libk5crypto3 (= 1.17-10),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.17-10),
libkrb5support0 (= 1.17-10),
libksba8 (= 1.4.0-2),
libldap-2.4-2 (= 2.4.50+dfsg-1+b1),
libldap-common (= 2.4.50+dfsg-1),
liblz4-1 (= 1.9.2-2),
liblzma5 (= 5.2.4-1),
libmagic-mgc (= 1:5.38-5),
libmagic1 (= 1:5.38-5),
libmount1 (= 2.35.2-7),
libmpc3 (= 1.1.0-1),
libmpfr6 (= 4.0.2-1),
libncurses6 (= 6.2-1),
libncursesw6 (= 6.2-1),
libnettle8 (= 3.6-2),
libnghttp2-14 (= 1.41.0-2),
libnpth0 (= 1.6-2),
libp11-kit0 (= 0.23.20-1),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libpcre2-8-0 (= 10.34-7),
libpcre3 (= 2:8.39-13),
libperl5.30 (= 5.30.3-4),
libpipeline1 (= 1.5.2-2),
libprocps8 (= 2:3.3.16-5),
libpsl5 (= 0.21.0-1.1),
libreadline8 (= 8.0-4),
librhash0 (= 1.4.0-1),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.27+dfsg-2),
libsasl2-modules-db (= 2.1.27+dfsg-2),
libseccomp2 (= 2.4.3-1+rpi1),
libselinux1 (= 3.1-2),
libsemanage-common (= 3.1-1),
libsemanage1 (= 3.1-1),
libsepol1 (= 3.1-1),
libsigsegv2 (= 2.12-2),
libsmartcols1 (= 2.35.2-7),
libsqlite3-0 (= 3.32.3-1),
libssh2-1 (= 1.8.0-2.1),
libssl1.1 (= 1.1.1g-1),
libstdc++-9-dev (= 9.3.0-14+rpi1),
libstdc++6 (= 10.1.0-4+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 245.6-2+rpi1+b1),
libtasn1-6 (= 4.16.0-2),
libtinfo6 (= 6.2-1),
libtool (= 2.4.6-14),
libubsan1 (= 10.1.0-4+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 245.6-2+rpi1+b1),
libunistring2 (= 0.9.10-4),
libuuid1 (= 2.35.2-7),
libuv1 (= 1.38.0-3),
libxml2 (= 2.9.10+dfsg-5+b1),
libzstd1 (= 1.4.5+dfsg-3+rpi1),
linux-libc-dev (= 5.7.6-1+rpi1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-4),
make (= 4.2.1-2),
man-db (= 2.9.3-2),
mawk (= 1.3.4.20200120-2),
ncurses-base (= 6.2-1),
ncurses-bin (= 6.2-1),
passwd (= 1:4.8.1-1),
patch (= 2.7.6-6),
perl (= 5.30.3-4),
perl-base (= 5.30.3-4),
perl-modules-5.30 (= 5.30.3-4),
pinentry-curses (= 1.1.0-4),
po-debconf (= 1.0.21),
procps (= 2:3.3.16-5),
raspbian-archive-keyring (= 20120528.2),
readline-common (= 8.0-4),
sed (= 4.7-1),
sensible-utils (= 0.0.12+nmu1),
sysvinit-utils (= 2.96-3),
tar (= 1.30+dfsg-7),
util-linux (= 2.35.2-7),
xz-utils (= 5.2.4-1),
zlib1g (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="POSIX"
SOURCE_DATE_EPOCH="1595499557"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libbpp-seq-omics-dev_2.4.1-5_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 378248 bytes: control archive=2248 bytes.
912 bytes, 19 lines control
4366 bytes, 50 lines md5sums
Package: libbpp-seq-omics-dev
Source: libbpp-seq-omics
Version: 2.4.1-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3558
Depends: libbpp-seq-omics3 (= 2.4.1-5), libbpp-seq-dev (>= 2.4.1)
Section: libdevel
Priority: optional
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Bio++ Sequence library: genomics components (development files)
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
Bio++ is Object Oriented and is designed to be both easy to use and
computer efficient. Bio++ intends to help programmers to write computer
expensive programs, by providing them a set of re-usable tools.
.
This package contains the static library and the header files of the
Bio++ classes dedicated to genomic sequencing.
drwxr-xr-x root/root 0 2020-07-23 10:19 ./
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/include/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/include/Bpp/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/include/Bpp/Seq/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/include/Bpp/Seq/Feature/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/include/Bpp/Seq/Feature/Bed/
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-rw-r--r-- root/root 3441 2018-08-15 09:28 ./usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/include/Bpp/Seq/Io/
-rw-r--r-- root/root 4066 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Fastq.h
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/include/Bpp/Seq/Io/Maf/
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-rw-r--r-- root/root 2916 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h
-rw-r--r-- root/root 3396 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h
-rw-r--r-- root/root 4524 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h
-rw-r--r-- root/root 3918 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h
-rw-r--r-- root/root 3060 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h
-rw-r--r-- root/root 3608 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h
-rw-r--r-- root/root 3781 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h
-rw-r--r-- root/root 3307 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h
-rw-r--r-- root/root 2724 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h
-rw-r--r-- root/root 4455 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/IterationListener.h
-rw-r--r-- root/root 8676 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafBlock.h
-rw-r--r-- root/root 6822 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafIterator.h
-rw-r--r-- root/root 4248 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafParser.h
-rw-r--r-- root/root 8026 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafSequence.h
-rw-r--r-- root/root 22454 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MafStatistics.h
-rw-r--r-- root/root 3223 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h
-rw-r--r-- root/root 4276 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h
-rw-r--r-- root/root 5518 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h
-rw-r--r-- root/root 3696 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h
-rw-r--r-- root/root 7473 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h
-rw-r--r-- root/root 3042 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h
-rw-r--r-- root/root 5728 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h
-rw-r--r-- root/root 3211 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h
-rw-r--r-- root/root 2999 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h
-rw-r--r-- root/root 4025 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h
-rw-r--r-- root/root 4120 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h
-rw-r--r-- root/root 3928 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h
-rw-r--r-- root/root 3136 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h
-rw-r--r-- root/root 3946 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/TableOutputMafIterator.h
-rw-r--r-- root/root 4026 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h
-rw-r--r-- root/root 2900 2018-08-15 09:28 ./usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/lib/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/lib/arm-linux-gnueabihf/cmake/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/
-rw-r--r-- root/root 1722 2020-07-23 10:19 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake
-rw-r--r-- root/root 2326 2020-07-23 10:19 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake
-rw-r--r-- root/root 1587 2020-07-23 10:19 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake
-rw-r--r-- root/root 3994 2020-07-23 10:19 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake
-rw-r--r-- root/root 3345626 2020-07-23 10:19 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a
lrwxrwxrwx root/root 0 2020-07-23 10:19 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so -> libbpp-seq-omics.so.3
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/share/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/share/doc/libbpp-seq-omics-dev/
-rw-r--r-- root/root 1421 2020-07-23 10:19 ./usr/share/doc/libbpp-seq-omics-dev/changelog.Debian.gz
-rw-r--r-- root/root 5343 2018-08-15 09:28 ./usr/share/doc/libbpp-seq-omics-dev/changelog.gz
-rw-r--r-- root/root 23176 2020-07-23 10:19 ./usr/share/doc/libbpp-seq-omics-dev/copyright
libbpp-seq-omics3-dbgsym_2.4.1-5_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 5222508 bytes: control archive=560 bytes.
427 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libbpp-seq-omics3-dbgsym
Source: libbpp-seq-omics
Version: 2.4.1-5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5270
Depends: libbpp-seq-omics3 (= 2.4.1-5)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libbpp-seq-omics3
Build-Ids: 7445a077613d89fed7e0661ac3b8dcc1567ac24c
drwxr-xr-x root/root 0 2020-07-23 10:19 ./
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/lib/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/lib/debug/.build-id/74/
-rw-r--r-- root/root 5385928 2020-07-23 10:19 ./usr/lib/debug/.build-id/74/45a077613d89fed7e0661ac3b8dcc1567ac24c.debug
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/share/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-07-23 10:19 ./usr/share/doc/libbpp-seq-omics3-dbgsym -> libbpp-seq-omics3
libbpp-seq-omics3_2.4.1-5_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 185696 bytes: control archive=1064 bytes.
931 bytes, 20 lines control
329 bytes, 4 lines md5sums
48 bytes, 1 lines shlibs
65 bytes, 2 lines triggers
Package: libbpp-seq-omics3
Source: libbpp-seq-omics
Version: 2.4.1-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 656
Depends: libbpp-core4 (>= 2.4.1), libbpp-seq12 (>= 2.4.1), libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Bio++ Sequence library: genomics components
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
Bio++ is Object Oriented and is designed to be both easy to use and
computer efficient. Bio++ intends to help programmers to write computer
expensive programs, by providing them a set of re-usable tools.
.
This package contains the dynamic library of the Bio++ classes
dedicated to genomic sequencing.
drwxr-xr-x root/root 0 2020-07-23 10:19 ./
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/lib/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2020-07-23 10:19 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3 -> libbpp-seq-omics.so.3.0.0
-rw-r--r-- root/root 628128 2020-07-23 10:19 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/share/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-07-23 10:19 ./usr/share/doc/libbpp-seq-omics3/
-rw-r--r-- root/root 1421 2020-07-23 10:19 ./usr/share/doc/libbpp-seq-omics3/changelog.Debian.gz
-rw-r--r-- root/root 5343 2018-08-15 09:28 ./usr/share/doc/libbpp-seq-omics3/changelog.gz
-rw-r--r-- root/root 23176 2020-07-23 10:19 ./usr/share/doc/libbpp-seq-omics3/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 209412
Build-Time: 702
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 379
Job: libbpp-seq-omics_2.4.1-5
Machine Architecture: armhf
Package: libbpp-seq-omics
Package-Time: 1128
Source-Version: 2.4.1-5
Space: 209412
Status: successful
Version: 2.4.1-5
--------------------------------------------------------------------------------
Finished at 2020-07-28T05:22:38Z
Build needed 00:18:48, 209412k disk space