libbpp-seq-omics →
2.3.2-1 →
armhf → 2018-02-14 14:30:13
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| libbpp-seq-omics 2.3.2-1 (armhf) Wed, 14 Feb 2018 14:22:44 +0000 |
+==============================================================================+
Package: libbpp-seq-omics
Version: 2.3.2-1
Source Version: 2.3.2-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-b98fdf4a-1926-4b6d-8ffe-f9eeb41478d9' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.6 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.3 MB]
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+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libbpp-seq-omics' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/libbpp-seq-omics.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/libbpp-seq-omics.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 112 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main libbpp-seq-omics 2.3.2-1 (dsc) [2230 B]
Get:2 http://172.17.0.1/private buster-staging/main libbpp-seq-omics 2.3.2-1 (tar) [105 kB]
Get:3 http://172.17.0.1/private buster-staging/main libbpp-seq-omics 2.3.2-1 (diff) [4384 B]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-nqSlmh/libbpp-seq-omics-2.3.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-nqSlmh' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-aTt3fS/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-aTt3fS/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-aTt3fS/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-aTt3fS/apt_archive ./ InRelease
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Install core build dependencies (apt-based resolver)
----------------------------------------------------
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Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.80), libbpp-seq-dev (>= 2.3.2)
Filtered Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.80), libbpp-seq-dev (>= 2.3.2)
dpkg-deb: building package 'sbuild-build-depends-libbpp-seq-omics-dummy' in '/<<BUILDDIR>>/resolver-aTt3fS/apt_archive/sbuild-build-depends-libbpp-seq-omics-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libbpp-seq-omics-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
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Install libbpp-seq-omics build dependencies (apt-based resolver)
----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbpp-core-dev libbpp-core3 libbpp-seq-dev libbpp-seq11 libbsd0 libcroco3
libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1
libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libssl1.0.2
libtimedate-perl libtool libuv1 libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation ninja-build dh-make dwz gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc less www-browser apparmor
libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbpp-core-dev libbpp-core3 libbpp-seq-dev libbpp-seq11 libbsd0 libcroco3
libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1
libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libssl1.0.2
libtimedate-perl libtool libuv1 libxml2 m4 man-db po-debconf
sbuild-build-depends-libbpp-seq-omics-dummy
0 upgraded, 54 newly installed, 0 to remove and 21 not upgraded.
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Get:44 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
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Get:47 http://172.17.0.1/private buster-staging/main armhf libbpp-core3 armhf 2.3.2-1 [556 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libbpp-core-dev armhf 2.3.2-1 [1845 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libbpp-seq11 armhf 2.3.2-1 [437 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libbpp-seq-dev armhf 2.3.2-1 [1637 kB]
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+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
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sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2018c-1 udev_236-2 util-linux_2.30.2-0.3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb 8 22:43:44 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libbpp-seq-omics_2.3.2-1.dsc
dpkg-source: info: extracting libbpp-seq-omics in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libbpp-seq-omics_2.3.2.orig.tar.gz
dpkg-source: info: unpacking libbpp-seq-omics_2.3.2-1.debian.tar.xz
dpkg-source: info: applying unforce-cxxflags.patch
dpkg-source: info: applying fix_test_cmakelist.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-b98fdf4a-1926-4b6d-8ffe-f9eeb41478d9
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libbpp-seq-omics
dpkg-buildpackage: info: source version 2.3.2-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build libbpp-seq-omics-2.3.2
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
-- The CXX compiler identification is GNU 7.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- bpp-core 3.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
-- includes: /usr/include
-- bpp-seq 11.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0
-- includes: /usr/include
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
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make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/depend
make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-static.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake --color=
Scanning dependencies of target bpp-seq-omics-shared
Scanning dependencies of target bpp-seq-omics-static
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build
make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 2%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o
[ 2%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o
[ 3%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o
[ 5%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp
[ 6%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp
[ 7%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp
[ 8%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/SequenceFeature.cpp
[ 10%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp
[ 11%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.cpp
[ 12%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/SequenceFeature.cpp
[ 14%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp
[ 15%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp
[ 16%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp
[ 17%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.cpp
[ 19%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp
[ 20%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp
In file included from /usr/include/c++/7/map:61:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 21%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp
[ 23%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp
[ 24%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp
In file included from /usr/include/c++/7/map:61:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp
[ 26%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp
[ 28%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp
[ 29%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp
[ 30%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp
[ 32%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp
[ 33%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp
[ 34%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp
[ 35%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp
[ 37%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp
In file included from /usr/include/c++/7/map:61:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp
[ 39%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp
[ 41%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp
[ 42%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp
In file included from /usr/include/c++/7/map:61:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp
[ 44%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp
[ 46%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp
[ 48%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.cpp
[ 50%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp
[ 51%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp
[ 52%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp
[ 53%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp
[ 55%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp
[ 56%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp
[ 57%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /usr/include/Bpp/Numeric/Range.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::const_reverse_iterator std::vector<_Tp, _Alloc>::rbegin() const [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:609:44: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return const_reverse_iterator(end()); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In constructor 'std::reverse_iterator<_Iterator>::reverse_iterator(std::reverse_iterator<_Iterator>::iterator_type) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_iterator.h:132:7: note: parameter passing for argument of type 'std::reverse_iterator<__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > > >::iterator_type {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
reverse_iterator(iterator_type __x) : current(__x) { }
^~~~~~~~~~~~~~~~
[ 58%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.cpp
[ 60%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp
[ 61%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp
[ 62%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp
[ 64%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /usr/include/Bpp/Numeric/Range.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::const_reverse_iterator std::vector<_Tp, _Alloc>::rbegin() const [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:609:44: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return const_reverse_iterator(end()); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In constructor 'std::reverse_iterator<_Iterator>::reverse_iterator(std::reverse_iterator<_Iterator>::iterator_type) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_iterator.h:132:7: note: parameter passing for argument of type 'std::reverse_iterator<__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > > >::iterator_type {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
reverse_iterator(iterator_type __x) : current(__x) { }
^~~~~~~~~~~~~~~~
[ 65%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp
[ 66%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp
[ 67%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp
[ 69%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp
[ 70%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp
[ 71%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp
[ 73%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp
[ 74%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp
[ 75%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp
[ 76%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp
[ 78%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp
[ 79%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp
[ 80%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp
[ 82%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp
[ 83%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp
[ 84%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp
[ 85%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp
[ 87%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp
[ 88%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp
[ 89%] Linking CXX shared library libbpp-seq-omics.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-shared.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq-omics.so.2 -o libbpp-seq-omics.so.2.0.0 CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
[ 91%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp
[ 92%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq-omics.so.2.0.0 libbpp-seq-omics.so.2 libbpp-seq-omics.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 92%] Built target bpp-seq-omics-shared
[ 93%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp
make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_gff.dir/DependInfo.cmake --color=
Scanning dependencies of target test_gff
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make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/build
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[ 94%] Building CXX object test/CMakeFiles/test_gff.dir/test_gff.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_gff.dir/test_gff.cpp.o -c /<<PKGBUILDDIR>>/test/test_gff.cpp
make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/depend
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color=
Scanning dependencies of target test_fastq
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make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build
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[ 96%] Building CXX object test/CMakeFiles/test_fastq.dir/test_fastq.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_fastq.dir/test_fastq.cpp.o -c /<<PKGBUILDDIR>>/test/test_fastq.cpp
[ 97%] Linking CXX executable test_gff
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gff.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_gff.dir/test_gff.cpp.o -o test_gff -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq-omics.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 97%] Built target test_gff
[ 98%] Linking CXX static library libbpp-seq-omics.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-omics-static.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-static.dir/link.txt --verbose=1
/usr/bin/ar qc libbpp-seq-omics.a CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o
/usr/bin/ranlib libbpp-seq-omics.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target bpp-seq-omics-static
[100%] Linking CXX executable test_fastq
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fastq.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_fastq.dir/test_fastq.cpp.o -o test_fastq -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq-omics.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target test_fastq
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_test -a
cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=-j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
Start 1: test_fastq
Start 2: test_gff
1/2 Test #1: test_fastq ....................... Passed 0.03 sec
2/2 Test #2: test_gff ......................... Passed 0.03 sec
100% tests passed, 0 tests failed out of 2
Total Test time (real) = 0.03 sec
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
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make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/depend
make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-static.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/build
make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/CMakeFiles/bpp-seq-omics-static.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/CMakeFiles/bpp-seq-omics-shared.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 94%] Built target bpp-seq-omics-shared
[ 94%] Built target bpp-seq-omics-static
make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend
make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_gff.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_gff.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target test_fastq
[100%] Built target test_gff
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2.0.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Gff
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Bed
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeature.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/FeatureReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafStatistics.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/IterationListener.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafBlock.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafParser.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafSequence.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Fastq.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
--> libbpp-core-dev package exists.
--> libbpp-seq-dev package exists.
set -e
install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbpp-seq-omics2/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2 debian/libbpp-seq-omics2/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2.0.0 debian/libbpp-seq-omics2/usr/lib/arm-linux-gnueabihf
PKGDEV=libbpp-seq-omics-dev
PKGSHL=libbpp-seq-omics2
install -d -m 755 debian/libbpp-seq-omics-dev/usr/include
mv debian/tmp/usr/include/Bpp debian/libbpp-seq-omics-dev/usr/include
install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-seq-omics2/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package libbpp-seq-omics-dev: unused substitution variable ${devlibs:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libbpp-seq-omics2' in '../libbpp-seq-omics2_2.3.2-1_armhf.deb'.
dpkg-deb: building package 'libbpp-seq-omics-dev' in '../libbpp-seq-omics-dev_2.3.2-1_armhf.deb'.
dpkg-deb: building package 'libbpp-seq-omics2-dbgsym' in '../libbpp-seq-omics2-dbgsym_2.3.2-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../libbpp-seq-omics_2.3.2-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build libbpp-seq-omics-2.3.2
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-02-14T14:30:10Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libbpp-seq-omics_2.3.2-1_armhf.changes:
---------------------------------------
Format: 1.8
Date: Wed, 07 Feb 2018 10:45:02 +0200
Source: libbpp-seq-omics
Binary: libbpp-seq-omics-dev libbpp-seq-omics2
Architecture: armhf
Version: 2.3.2-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Julien Dutheil <julien.dutheil@univ-montp2.fr>
Description:
libbpp-seq-omics-dev - Bio++ Sequence library: genomics components (development files)
libbpp-seq-omics2 - Bio++ Sequence library: genomics components
Changes:
libbpp-seq-omics (2.3.2-1) unstable; urgency=medium
.
[ Julien Dutheil ]
* Standards-Version: 4.1.2
.
[ Andreas Tille ]
* cme fix dpkg-control
* debhelper 11
Checksums-Sha1:
69b9ee4ead320cec9794be4931c4e930e99bdb89 918408 libbpp-seq-omics-dev_2.3.2-1_armhf.deb
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libbpp-seq-omics-dev_2.3.2-1_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 918408 bytes: control archive=2204 bytes.
913 bytes, 19 lines control
4194 bytes, 48 lines md5sums
Package: libbpp-seq-omics-dev
Source: libbpp-seq-omics
Version: 2.3.2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 13637
Depends: libbpp-seq-omics2 (= 2.3.2-1), libbpp-seq-dev (>= 2.3.2)
Section: libdevel
Priority: optional
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Bio++ Sequence library: genomics components (development files)
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
Bio++ is Object Oriented and is designed to be both easy to use and
computer efficient. Bio++ intends to help programmers to write computer
expensive programs, by providing them a set of re-usable tools.
.
This package contains the static library and the header files of the
Bio++ classes dedicated to genomic sequencing.
drwxr-xr-x root/root 0 2018-02-07 08:45 ./
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/include/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/include/Bpp/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/include/Bpp/Seq/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/include/Bpp/Seq/Feature/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/include/Bpp/Seq/Feature/Bed/
-rw-r--r-- root/root 4712 2017-12-11 14:20 ./usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h
-rw-r--r-- root/root 2515 2017-12-11 14:20 ./usr/include/Bpp/Seq/Feature/FeatureReader.h
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/include/Bpp/Seq/Feature/Gff/
-rw-r--r-- root/root 4800 2017-12-11 14:20 ./usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/include/Bpp/Seq/Feature/Gtf/
-rw-r--r-- root/root 3657 2017-12-11 14:20 ./usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h
-rw-r--r-- root/root 20572 2017-12-11 14:20 ./usr/include/Bpp/Seq/Feature/SequenceFeature.h
-rw-r--r-- root/root 3441 2017-12-11 14:20 ./usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/include/Bpp/Seq/Io/
-rw-r--r-- root/root 4102 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Fastq.h
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/include/Bpp/Seq/Io/Maf/
-rw-r--r-- root/root 9975 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h
-rw-r--r-- root/root 2884 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h
-rw-r--r-- root/root 4086 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h
-rw-r--r-- root/root 2878 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h
-rw-r--r-- root/root 2934 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h
-rw-r--r-- root/root 3414 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h
-rw-r--r-- root/root 4218 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h
-rw-r--r-- root/root 3936 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h
-rw-r--r-- root/root 3078 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h
-rw-r--r-- root/root 3644 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h
-rw-r--r-- root/root 3799 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h
-rw-r--r-- root/root 3343 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h
-rw-r--r-- root/root 2742 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h
-rw-r--r-- root/root 4455 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/IterationListener.h
-rw-r--r-- root/root 8901 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/MafBlock.h
-rw-r--r-- root/root 6880 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/MafIterator.h
-rw-r--r-- root/root 4266 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/MafParser.h
-rw-r--r-- root/root 8026 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/MafSequence.h
-rw-r--r-- root/root 22616 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/MafStatistics.h
-rw-r--r-- root/root 3259 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h
-rw-r--r-- root/root 4294 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h
-rw-r--r-- root/root 3714 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h
-rw-r--r-- root/root 7491 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h
-rw-r--r-- root/root 3060 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h
-rw-r--r-- root/root 5226 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h
-rw-r--r-- root/root 3247 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h
-rw-r--r-- root/root 3017 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h
-rw-r--r-- root/root 4043 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h
-rw-r--r-- root/root 4138 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h
-rw-r--r-- root/root 3946 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h
-rw-r--r-- root/root 3154 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h
-rw-r--r-- root/root 4044 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h
-rw-r--r-- root/root 2936 2017-12-11 14:20 ./usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/lib/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/lib/arm-linux-gnueabihf/cmake/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/
-rw-r--r-- root/root 1607 2018-02-07 08:45 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake
-rw-r--r-- root/root 2326 2018-02-07 08:45 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake
-rw-r--r-- root/root 1587 2018-02-07 08:45 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake
-rw-r--r-- root/root 3994 2018-02-07 08:45 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake
-rw-r--r-- root/root 13695810 2018-02-07 08:45 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a
lrwxrwxrwx root/root 0 2018-02-07 08:45 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so -> libbpp-seq-omics.so.2
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/share/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/share/doc/libbpp-seq-omics-dev/
-rw-r--r-- root/root 865 2018-02-07 08:45 ./usr/share/doc/libbpp-seq-omics-dev/changelog.Debian.gz
-rw-r--r-- root/root 5206 2017-12-11 14:20 ./usr/share/doc/libbpp-seq-omics-dev/changelog.gz
-rw-r--r-- root/root 3121 2018-02-07 08:45 ./usr/share/doc/libbpp-seq-omics-dev/copyright
libbpp-seq-omics2-dbgsym_2.3.2-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 3029888 bytes: control archive=560 bytes.
427 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libbpp-seq-omics2-dbgsym
Source: libbpp-seq-omics
Version: 2.3.2-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3555
Depends: libbpp-seq-omics2 (= 2.3.2-1)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libbpp-seq-omics2
Build-Ids: ac606cceabfb64b48fc0fd8a381fe558d8fe754b
drwxr-xr-x root/root 0 2018-02-07 08:45 ./
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/lib/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/lib/debug/.build-id/ac/
-rw-r--r-- root/root 3629688 2018-02-07 08:45 ./usr/lib/debug/.build-id/ac/606cceabfb64b48fc0fd8a381fe558d8fe754b.debug
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/share/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-02-07 08:45 ./usr/share/doc/libbpp-seq-omics2-dbgsym -> libbpp-seq-omics2
libbpp-seq-omics2_2.3.2-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 215800 bytes: control archive=1060 bytes.
909 bytes, 20 lines control
329 bytes, 4 lines md5sums
37 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libbpp-seq-omics2
Source: libbpp-seq-omics
Version: 2.3.2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1220
Depends: libbpp-core3, libbpp-seq11, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Bio++ Sequence library: genomics components
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
Bio++ is Object Oriented and is designed to be both easy to use and
computer efficient. Bio++ intends to help programmers to write computer
expensive programs, by providing them a set of re-usable tools.
.
This package contains the dynamic library of the Bio++ classes
dedicated to genomic sequencing.
drwxr-xr-x root/root 0 2018-02-07 08:45 ./
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/lib/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2018-02-07 08:45 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2 -> libbpp-seq-omics.so.2.0.0
-rw-r--r-- root/root 1226144 2018-02-07 08:45 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2.0.0
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/share/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-02-07 08:45 ./usr/share/doc/libbpp-seq-omics2/
-rw-r--r-- root/root 865 2018-02-07 08:45 ./usr/share/doc/libbpp-seq-omics2/changelog.Debian.gz
-rw-r--r-- root/root 5206 2017-12-11 14:20 ./usr/share/doc/libbpp-seq-omics2/changelog.gz
-rw-r--r-- root/root 3121 2018-02-07 08:45 ./usr/share/doc/libbpp-seq-omics2/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 130892
Build-Time: 126
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 304
Job: libbpp-seq-omics_2.3.2-1
Machine Architecture: armhf
Package: libbpp-seq-omics
Package-Time: 446
Source-Version: 2.3.2-1
Space: 130892
Status: successful
Version: 2.3.2-1
--------------------------------------------------------------------------------
Finished at 2018-02-14T14:30:10Z
Build needed 00:07:26, 130892k disk space