libbpp-seq-omics →
2.3.1-5 →
armhf → 2017-08-29 05:07:10
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| libbpp-seq-omics 2.3.1-5 (armhf) Tue, 29 Aug 2017 04:41:57 +0000 |
+==============================================================================+
Package: libbpp-seq-omics
Version: 2.3.1-5
Source Version: 2.3.1-5
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-4fffe3f6-b61e-4f76-bfa5-17ed376dd070' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.1 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.0 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libbpp-seq-omics' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/libbpp-seq-omics.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/libbpp-seq-omics.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 112 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main libbpp-seq-omics 2.3.1-5 (dsc) [2233 B]
Get:2 http://172.17.0.1/private buster-staging/main libbpp-seq-omics 2.3.1-5 (tar) [105 kB]
Get:3 http://172.17.0.1/private buster-staging/main libbpp-seq-omics 2.3.1-5 (diff) [4332 B]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-hJ8g40/libbpp-seq-omics-2.3.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-hJ8g40' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-JniN0b/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-JniN0b/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-JniN0b/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JniN0b/apt_archive ./ InRelease
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Get:3 copy:/<<BUILDDIR>>/resolver-JniN0b/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JniN0b/apt_archive ./ Sources [349 B]
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Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
Need to get 776 B of archives.
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debconf: delaying package configuration, since apt-utils is not installed
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), cmake, d-shlibs (>= 0.80), libbpp-seq-dev (>= 2.3.1)
Filtered Build-Depends: debhelper (>= 10), cmake, d-shlibs (>= 0.80), libbpp-seq-dev (>= 2.3.1)
dpkg-deb: building package 'sbuild-build-depends-libbpp-seq-omics-dummy' in '/<<BUILDDIR>>/resolver-JniN0b/apt_archive/sbuild-build-depends-libbpp-seq-omics-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libbpp-seq-omics-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JniN0b/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JniN0b/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JniN0b/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JniN0b/apt_archive ./ Sources [524 B]
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Reading package lists...
Install libbpp-seq-omics build dependencies (apt-based resolver)
----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbpp-core-dev libbpp-core3 libbpp-seq-dev libbpp-seq11 libbsd0 libcroco3
libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 libldap-common liblzo2-2 libmagic-mgc
libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2 libtimedate-perl
libtool libuv1 libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff lrzip krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbpp-core-dev libbpp-core3 libbpp-seq-dev libbpp-seq11 libbsd0 libcroco3
libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 libldap-common liblzo2-2 libmagic-mgc
libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2 libtimedate-perl
libtool libuv1 libxml2 m4 man-db po-debconf
sbuild-build-depends-libbpp-seq-omics-dummy
0 upgraded, 58 newly installed, 0 to remove and 29 not upgraded.
Need to get 29.1 MB of archives.
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Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-1 [95.7 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
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Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.9.0-1 [1294 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
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Get:19 http://172.17.0.1/private buster-staging/main armhf libldap-common all 2.4.45+dfsg-1 [87.0 kB]
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Get:48 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
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Get:51 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
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Get:55 http://172.17.0.1/private buster-staging/main armhf libbpp-core3 armhf 2.3.1-4 [531 kB]
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Get:57 http://172.17.0.1/private buster-staging/main armhf libbpp-seq11 armhf 2.3.1-7 [427 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libbpp-seq-dev armhf 2.3.1-7 [1668 kB]
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
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Processing triggers for libc-bin (2.24-12) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.29-4+rpi1 dpkg-dev_1.18.24 g++-7_7.1.0-13+rpi1 gcc-7_7.1.0-13+rpi1 libc6-dev_2.24-12 libstdc++-7-dev_7.1.0-13+rpi1 libstdc++6_7.1.0-13+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.116 apt_1.5~beta1+b3 autoconf_2.69-11 automake_1:1.15.1-2.1 autopoint_0.19.8.1-4 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.43 bash_4.4-5 binutils_2.29-4+rpi1 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2+rpi1 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 cmake_3.9.0-1 cmake-data_3.9.0-1 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:7.1.0-2 cpp-7_7.1.0-13+rpi1 d-shlibs_0.81 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.7.2 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.5-1 e2fsprogs_1.43.5-1 fakeroot_1.21-3.1 file_1:5.31-1 findutils_4.6.0+git+20170729-2 g++_4:7.1.0-2 g++-7_7.1.0-13+rpi1 gcc_4:7.1.0-2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.1.0-13+rpi1 gcc-7-base_7.1.0-13+rpi1 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.1.18-8 gnupg-agent_2.1.18-8 gpgv_2.1.18-8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-10 libapt-pkg5.0_1.5~beta1+b3 libarchive-zip-perl_1.59-1 libarchive13_3.2.2-2 libasan4_7.1.0-13+rpi1 libassuan0_2.4.3-3 libatomic1_7.1.0-13+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libblkid1_2.29.2-2+rpi1 libbpp-core-dev_2.3.1-4 libbpp-core3_2.3.1-4 libbpp-seq-dev_2.3.1-7 libbpp-seq11_2.3.1-7 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.1.0-13+rpi1 libcilkrts5_7.1.0-13+rpi1 libcomerr2_1.43.5-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4 libcurl3_7.55.0-1 libdb5.3_5.3.28-13+rpi1 libdbus-1-3_1.11.16+really1.10.22-1 libdebconfclient0_0.229 libdevmapper1.02.1_2:1.02.137-2 libdpkg-perl_1.18.24 libdrm-common_2.4.82-1+rpi1 libdrm2_2.4.82-1+rpi1 libexpat1_2.2.3-1 libfakeroot_1.21-3.1 libfdisk1_2.29.2-2+rpi1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-7-dev_7.1.0-13+rpi1 libgcc1_1:7.1.0-13+rpi1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libglib2.0-0_2.53.4-3 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-2 libgomp1_7.1.0-13+rpi1 libgpg-error0_1.27-3 libgssapi-krb5-2_1.15.1-2 libhogweed4_3.3-1 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-1 libip4tc0_1.6.1-2 libisl15_0.18-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.15.1-2 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libkrb5-3_1.15.1-2 libkrb5support0_1.15.1-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.31-1 libmagic1_1:5.31-1 libmount1_2.29.2-2+rpi1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1 libnghttp2-14_1.24.0-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.24_5.24.1-7 libperl5.26_5.26.0-5 libpipeline1_1.4.2-1 libplymouth4_0.9.2-4 libpng16-16_1.6.31-1 libprocps6_2:3.3.12-3 libpsl5_0.18.0-2 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 librhash0_1.3.4-3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-2+rpi1 libsqlite3-0_3.19.3-3 libss2_1.43.5-1 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2l-2 libssl1.1_1.1.0f-4 libstdc++-7-dev_7.1.0-13+rpi1 libstdc++6_7.1.0-13+rpi1 libsystemd0_234-2 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libubsan0_7.1.0-13+rpi1 libudev1_234-2 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2+rpi1 libuv1_1.9.1-3 libxml2_2.9.4+dfsg1-3 linux-base_4.5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.29.2-2+rpi1 mountall_2.54 multiarch-support_2.24-12 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 openssl_1.1.0f-4 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-5 perl-base_5.26.0-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-5 pinentry-curses_1.0.0-2 plymouth_0.9.2-4 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-seq-omics-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-2 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 tzdata_2017b-2 udev_234-2 util-linux_2.29.2-2+rpi1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Aug 24 05:02:17 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libbpp-seq-omics_2.3.1-5.dsc
dpkg-source: info: extracting libbpp-seq-omics in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libbpp-seq-omics_2.3.1.orig.tar.gz
dpkg-source: info: unpacking libbpp-seq-omics_2.3.1-5.debian.tar.xz
dpkg-source: info: applying unforce-cxxflags.patch
dpkg-source: info: applying fix_test_cmakelist.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-4fffe3f6-b61e-4f76-bfa5-17ed376dd070
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libbpp-seq-omics
dpkg-buildpackage: info: source version 2.3.1-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build libbpp-seq-omics-2.3.1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
-- The CXX compiler identification is GNU 7.1.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- bpp-core 3.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
-- includes: /usr/include
-- bpp-seq 11.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0
-- includes: /usr/include
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/depend
make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-static.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake --color=
Scanning dependencies of target bpp-seq-omics-shared
Scanning dependencies of target bpp-seq-omics-static
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/build
make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 3%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o
[ 3%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o
[ 3%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o
[ 5%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/../FeatureReader.h:67:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BasicSequenceFeature nextFeature() throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:95:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature nextFeature() throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/../FeatureReader.h:67:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BasicSequenceFeature nextFeature() throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:96:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature nextFeature() throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/../FeatureReader.h:67:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BasicSequenceFeature nextFeature() throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:95:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature nextFeature() throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/../FeatureReader.h:67:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BasicSequenceFeature nextFeature() throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:96:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature nextFeature() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp:69:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature BedGraphFeatureReader::nextFeature() throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp:79:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature GffFeatureReader::nextFeature() throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp:69:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature BedGraphFeatureReader::nextFeature() throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp:79:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature GffFeatureReader::nextFeature() throw (Exception)
^~~~~
[ 6%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp
[ 7%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/SequenceFeature.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/../FeatureReader.h:67:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BasicSequenceFeature nextFeature() throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:87:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature nextFeature() throw (Exception);
^~~~~
[ 8%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp:73:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature GtfFeatureReader::nextFeature() throw (Exception)
^~~~~
[ 10%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp
[ 11%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/../FeatureReader.h:67:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BasicSequenceFeature nextFeature() throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:87:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature nextFeature() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp:73:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature GtfFeatureReader::nextFeature() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool nextSequence(std::istream& input, Sequence& seq) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.h:133:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeSequence(std::ostream& output, const Sequence& seq) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.cpp:47:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool Fastq::nextSequence(std::istream& input, Sequence& seq) const throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.cpp:88:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Fastq::writeSequence(std::ostream& output, const Sequence& seq) const throw (Exception)
^~~~~
[ 12%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp
[ 14%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp
[ 15%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/SequenceFeature.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:157:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextRemovedBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:165:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:254:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextRemovedBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:262:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:50:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* AlignmentFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:274:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* AlignmentFilter2MafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h:111:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp:50:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* BlockMergerMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 16%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp
[ 17%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h:89:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp:50:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* ChromosomeMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 19%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp
[ 20%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.cpp
[ 21%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:95:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp:53:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* ConcatenateMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool nextSequence(std::istream& input, Sequence& seq) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.h:133:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeSequence(std::ostream& output, const Sequence& seq) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.cpp:47:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool Fastq::nextSequence(std::istream& input, Sequence& seq) const throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.cpp:88:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Fastq::writeSequence(std::ostream& output, const Sequence& seq) const throw (Exception)
^~~~~
[ 23%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:114:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp:54:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* CoordinateTranslatorMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 24%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h:100:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp:57:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* CoordinatesOutputMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:157:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextRemovedBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:165:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:254:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextRemovedBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:262:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:50:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* AlignmentFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:274:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* AlignmentFilter2MafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 25%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h:91:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp:50:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* DuplicateFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 26%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp
[ 28%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:93:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextRemovedBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:50:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* EntropyFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h:100:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp:53:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* FeatureExtractorMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 29%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp
[ 30%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h:111:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp:50:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* BlockMergerMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:89:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextRemovedBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:97:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp:50:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* FeatureFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 32%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp
[ 33%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h:73:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp:54:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* FullGapFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:81:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:95:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:108:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:121:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:158:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) { return MafStatisticsResult::getValue(tag); }
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:162:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:169:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:176:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:495:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getCategory(double value) const throw (OutOfRangeException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
[ 34%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp
[ 35%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp
[ 37%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp
[ 38%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h:89:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp:50:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* ChromosomeMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:81:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:95:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:108:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:121:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:158:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) { return MafStatisticsResult::getValue(tag); }
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:162:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:169:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:176:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:495:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getCategory(double value) const throw (OutOfRangeException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.h:109:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp:51:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* MafParser::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
[ 39%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp
[ 41%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp
[ 42%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:81:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:95:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:108:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:121:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:158:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) { return MafStatisticsResult::getValue(tag); }
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:162:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:169:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:176:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:495:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getCategory(double value) const throw (OutOfRangeException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:95:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp:53:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* ConcatenateMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:86:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextRemovedBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:94:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp:53:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* MaskFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 43%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h:113:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
[ 44%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp
[ 46%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp
[ 48%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp:50:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* OrphanSequenceFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h:178:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp:53:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* OutputAlignmentMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:86:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:114:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp:54:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* CoordinateTranslatorMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 50%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp
[ 51%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp
[ 52%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h:100:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp:57:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* CoordinatesOutputMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:127:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:86:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextRemovedBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:94:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp:53:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* QualityFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 53%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp
[ 55%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp
[ 56%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h:91:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp:50:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* DuplicateFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:93:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextRemovedBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp:50:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* EntropyFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h:84:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp:45:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* RemoveEmptySequencesMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 57%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp
[ 58%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp
[ 60%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h:106:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:50:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* SequenceFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h:114:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:55:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* SequenceLDhotOutputMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h:100:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp:53:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* FeatureExtractorMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 61%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp
[ 62%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp
[ 64%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:89:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextRemovedBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:97:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp:50:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* FeatureFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:81:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:95:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:108:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:121:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:158:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) { return MafStatisticsResult::getValue(tag); }
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:162:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:169:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:176:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:495:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getCategory(double value) const throw (OutOfRangeException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* SequenceStatisticsMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h:83:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp:47:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* SequenceStreamToMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 65%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
[ 66%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h:73:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp:54:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* FullGapFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h:103:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
[ 67%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp
[ 69%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
[ 70%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:71:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
WindowSplitMafIterator(MafIterator* iterator, size_t windowSize, short splitOption = CENTER, bool keepSmallBlocks = false) throw (Exception):
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:81:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp:55:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* WindowSplitMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
[ 71%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:81:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:95:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:108:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:121:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:158:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) { return MafStatisticsResult::getValue(tag); }
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:162:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:169:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:176:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:495:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getCategory(double value) const throw (OutOfRangeException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:81:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:95:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:108:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:121:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:158:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) { return MafStatisticsResult::getValue(tag); }
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:162:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:169:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:176:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:495:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getCategory(double value) const throw (OutOfRangeException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/IterationListener.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.h:109:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
[ 73%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.cpp
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafParser.cpp:51:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* MafParser::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 74%] Linking CXX static library libbpp-seq-omics.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-omics-static.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-static.dir/link.txt --verbose=1
/usr/bin/ar qc libbpp-seq-omics.a CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o
/usr/bin/ranlib libbpp-seq-omics.a
[ 75%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 75%] Built target bpp-seq-omics-static
[ 76%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:81:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:95:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:108:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:121:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:158:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) { return MafStatisticsResult::getValue(tag); }
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:162:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:169:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:176:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:495:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getCategory(double value) const throw (OutOfRangeException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:86:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextRemovedBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:94:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp:53:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* MaskFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 78%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h:113:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
[ 79%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp:50:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* OrphanSequenceFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 80%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp
[ 82%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
[ 83%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h:178:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp:53:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* OutputAlignmentMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 84%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:86:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:127:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:86:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextRemovedBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:94:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp:53:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* QualityFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 85%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp
[ 87%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp
[ 88%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h:84:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp:45:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* RemoveEmptySequencesMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h:106:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:50:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* SequenceFilterMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h:114:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:55:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* SequenceLDhotOutputMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 89%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp
[ 91%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp
[ 92%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
[ 93%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:81:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:95:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:108:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:121:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:158:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BppNumberI& getValue(const std::string& tag) const throw (Exception) { return MafStatisticsResult::getValue(tag); }
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:162:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, double value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:169:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:176:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void setValue(const std::string& tag, unsigned int value) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafStatistics.h:495:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getCategory(double value) const throw (OutOfRangeException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* SequenceStatisticsMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h:103:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h:83:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp:47:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* SequenceStreamToMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafSequence.h:110:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t start() const throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(const std::string& name) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:125:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequence(size_t i) const throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:139:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MafSequence& getSequenceForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:149:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<const MafSequence*> getSequencesForSpecies(const std::string& species) const throw (SequenceNotFoundException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:170:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void removeCoordinatesFromSequence(size_t i) throw (IndexOutOfBoundsException) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:200:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Clonable& getProperty(const std::string& property) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:214:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteProperty(const std::string& property) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafBlock.h:231:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setProperty(const std::string& property, Clonable* data) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:69:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:103:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* nextBlock() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:141:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual MafBlock* nextRemovedBlock() throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:203:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/MafIterator.h:241:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception) {
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:71:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
WindowSplitMafIterator(MafIterator* iterator, size_t windowSize, short splitOption = CENTER, bool keepSmallBlocks = false) throw (Exception):
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:81:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* analyseCurrentBlock_() throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp:55:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MafBlock* WindowSplitMafIterator::analyseCurrentBlock_() throw (Exception)
^~~~~
[ 94%] Linking CXX shared library libbpp-seq-omics.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-shared.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq-omics.so.2 -o libbpp-seq-omics.so.2.0.0 CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq-omics.so.2.0.0 libbpp-seq-omics.so.2 libbpp-seq-omics.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend
make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/depend
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_gff.dir/DependInfo.cmake --color=
Scanning dependencies of target test_fastq
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make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/build
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[ 97%] Building CXX object test/CMakeFiles/test_fastq.dir/test_fastq.cpp.o
[ 97%] Building CXX object test/CMakeFiles/test_gff.dir/test_gff.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_gff.dir/test_gff.cpp.o -c /<<PKGBUILDDIR>>/test/test_gff.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_fastq.dir/test_fastq.cpp.o -c /<<PKGBUILDDIR>>/test/test_fastq.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:44:0,
from /<<PKGBUILDDIR>>/test/test_gff.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/../FeatureReader.h:67:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual const BasicSequenceFeature nextFeature() throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/test/test_gff.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:96:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const BasicSequenceFeature nextFeature() throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/test/test_fastq.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.h:121:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool nextSequence(std::istream& input, Sequence& seq) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fastq.h:133:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeSequence(std::ostream& output, const Sequence& seq) const throw (Exception);
^~~~~
[ 98%] Linking CXX executable test_gff
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gff.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_gff.dir/test_gff.cpp.o -o test_gff -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq-omics.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target test_gff
[100%] Linking CXX executable test_fastq
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fastq.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_fastq.dir/test_fastq.cpp.o -o test_fastq -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq-omics.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
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Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2.0.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Bed
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/FeatureReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Gff
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeature.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Fastq.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/IterationListener.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafBlock.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafParser.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafSequence.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafStatistics.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
--> libbpp-core-dev package exists.
--> libbpp-seq-dev package exists.
set -e
install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbpp-seq-omics2/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2 debian/libbpp-seq-omics2/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2.0.0 debian/libbpp-seq-omics2/usr/lib/arm-linux-gnueabihf
PKGDEV=libbpp-seq-omics-dev
PKGSHL=libbpp-seq-omics2
install -d -m 755 debian/libbpp-seq-omics-dev/usr/include
mv debian/tmp/usr/include/Bpp debian/libbpp-seq-omics-dev/usr/include
install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-seq-omics2/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package libbpp-seq-omics-dev: unused substitution variable ${devlibs:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libbpp-seq-omics2-dbgsym' in '../libbpp-seq-omics2-dbgsym_2.3.1-5_armhf.deb'.
dpkg-deb: building package 'libbpp-seq-omics2' in '../libbpp-seq-omics2_2.3.1-5_armhf.deb'.
dpkg-deb: building package 'libbpp-seq-omics-dev' in '../libbpp-seq-omics-dev_2.3.1-5_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libbpp-seq-omics_2.3.1-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build libbpp-seq-omics-2.3.1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-08-29T05:04:05Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libbpp-seq-omics_2.3.1-5_armhf.changes:
---------------------------------------
Format: 1.8
Date: Thu, 24 Aug 2017 06:53:33 +0200
Source: libbpp-seq-omics
Binary: libbpp-seq-omics-dev libbpp-seq-omics2
Architecture: armhf
Version: 2.3.1-5
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libbpp-seq-omics-dev - Bio++ Sequence library: genomics components (development files)
libbpp-seq-omics2 - Bio++ Sequence library: genomics components
Changes:
libbpp-seq-omics (2.3.1-5) unstable; urgency=medium
.
[ Julien Dutheil ]
* Does not override debian cxx flags anymore.
.
[ Andreas Tille ]
* Rebuild using gcc-7
* Standards-Version: 4.0.1
Checksums-Sha1:
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Files:
0b0f629d8e6468279e8f6dc4d28992a7 370284 libdevel optional libbpp-seq-omics-dev_2.3.1-5_armhf.deb
ff5ae17e283653b28fb974a5c9405175 6329046 debug extra libbpp-seq-omics2-dbgsym_2.3.1-5_armhf.deb
20aa48b842ad44714ef226eee14f77f7 183766 libs optional libbpp-seq-omics2_2.3.1-5_armhf.deb
9464c5697014d2cf55cfb22f6339fe0b 6272 science optional libbpp-seq-omics_2.3.1-5_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libbpp-seq-omics-dev_2.3.1-5_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 370284 bytes: control archive=2215 bytes.
912 bytes, 19 lines control
4194 bytes, 48 lines md5sums
Package: libbpp-seq-omics-dev
Source: libbpp-seq-omics
Version: 2.3.1-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3337
Depends: libbpp-seq-omics2 (= 2.3.1-5), libbpp-seq-dev (>= 2.3.1)
Section: libdevel
Priority: optional
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Bio++ Sequence library: genomics components (development files)
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
Bio++ is Object Oriented and is designed to be both easy to use and
computer efficient. Bio++ intends to help programmers to write computer
expensive programs, by providing them a set of re-usable tools.
.
This package contains the static library and the header files of the
Bio++ classes dedicated to genomic sequencing.
drwxr-xr-x root/root 0 2017-08-24 04:53 ./
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/include/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/include/Bpp/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/include/Bpp/Seq/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/include/Bpp/Seq/Feature/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/include/Bpp/Seq/Feature/Bed/
-rw-r--r-- root/root 4712 2017-06-08 18:23 ./usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h
-rw-r--r-- root/root 2515 2017-06-08 18:23 ./usr/include/Bpp/Seq/Feature/FeatureReader.h
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/include/Bpp/Seq/Feature/Gff/
-rw-r--r-- root/root 4800 2017-06-08 18:23 ./usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/include/Bpp/Seq/Feature/Gtf/
-rw-r--r-- root/root 3657 2017-06-08 18:23 ./usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h
-rw-r--r-- root/root 20572 2017-06-08 18:23 ./usr/include/Bpp/Seq/Feature/SequenceFeature.h
-rw-r--r-- root/root 3441 2017-06-08 18:23 ./usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/include/Bpp/Seq/Io/
-rw-r--r-- root/root 4102 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Fastq.h
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/include/Bpp/Seq/Io/Maf/
-rw-r--r-- root/root 9975 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h
-rw-r--r-- root/root 2884 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h
-rw-r--r-- root/root 4086 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h
-rw-r--r-- root/root 2878 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h
-rw-r--r-- root/root 2934 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h
-rw-r--r-- root/root 3414 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h
-rw-r--r-- root/root 4218 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h
-rw-r--r-- root/root 3936 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h
-rw-r--r-- root/root 3078 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h
-rw-r--r-- root/root 3644 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h
-rw-r--r-- root/root 3799 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h
-rw-r--r-- root/root 3343 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h
-rw-r--r-- root/root 2742 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h
-rw-r--r-- root/root 4455 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/IterationListener.h
-rw-r--r-- root/root 8901 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/MafBlock.h
-rw-r--r-- root/root 6880 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/MafIterator.h
-rw-r--r-- root/root 4266 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/MafParser.h
-rw-r--r-- root/root 8026 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/MafSequence.h
-rw-r--r-- root/root 22616 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/MafStatistics.h
-rw-r--r-- root/root 3259 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h
-rw-r--r-- root/root 4294 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h
-rw-r--r-- root/root 3714 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h
-rw-r--r-- root/root 7491 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h
-rw-r--r-- root/root 3060 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h
-rw-r--r-- root/root 5226 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h
-rw-r--r-- root/root 3247 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h
-rw-r--r-- root/root 3017 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h
-rw-r--r-- root/root 4043 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h
-rw-r--r-- root/root 4138 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h
-rw-r--r-- root/root 3946 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h
-rw-r--r-- root/root 3154 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h
-rw-r--r-- root/root 4044 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h
-rw-r--r-- root/root 2936 2017-06-08 18:23 ./usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/lib/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/lib/arm-linux-gnueabihf/cmake/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/
-rw-r--r-- root/root 1607 2017-08-24 04:53 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake
-rw-r--r-- root/root 2326 2017-08-24 04:53 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake
-rw-r--r-- root/root 1587 2017-08-24 04:53 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake
-rw-r--r-- root/root 3994 2017-08-24 04:53 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake
-rw-r--r-- root/root 3148766 2017-08-24 04:53 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a
lrwxrwxrwx root/root 0 2017-08-24 04:53 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so -> libbpp-seq-omics.so.2
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/share/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/share/doc/libbpp-seq-omics-dev/
-rw-r--r-- root/root 831 2017-08-24 04:53 ./usr/share/doc/libbpp-seq-omics-dev/changelog.Debian.gz
-rw-r--r-- root/root 5200 2017-06-08 18:23 ./usr/share/doc/libbpp-seq-omics-dev/changelog.gz
-rw-r--r-- root/root 3121 2017-08-24 04:53 ./usr/share/doc/libbpp-seq-omics-dev/copyright
libbpp-seq-omics2-dbgsym_2.3.1-5_armhf.deb
------------------------------------------
new debian package, version 2.0.
size 6329046 bytes: control archive=474 bytes.
424 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libbpp-seq-omics2-dbgsym
Source: libbpp-seq-omics
Version: 2.3.1-5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 6337
Depends: libbpp-seq-omics2 (= 2.3.1-5)
Section: debug
Priority: extra
Multi-Arch: same
Description: Debug symbols for libbpp-seq-omics2
Build-Ids: 63f3d73671825324507d7880545a30bcb60a7b65
drwxr-xr-x root/root 0 2017-08-24 04:53 ./
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/lib/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/lib/debug/.build-id/63/
-rw-r--r-- root/root 6478036 2017-08-24 04:53 ./usr/lib/debug/.build-id/63/f3d73671825324507d7880545a30bcb60a7b65.debug
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lrwxrwxrwx root/root 0 2017-08-24 04:53 ./usr/share/doc/libbpp-seq-omics2-dbgsym -> libbpp-seq-omics2
libbpp-seq-omics2_2.3.1-5_armhf.deb
-----------------------------------
new debian package, version 2.0.
size 183766 bytes: control archive=966 bytes.
908 bytes, 20 lines control
329 bytes, 4 lines md5sums
37 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libbpp-seq-omics2
Source: libbpp-seq-omics
Version: 2.3.1-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 624
Depends: libbpp-core3, libbpp-seq11, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Bio++ Sequence library: genomics components
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
Bio++ is Object Oriented and is designed to be both easy to use and
computer efficient. Bio++ intends to help programmers to write computer
expensive programs, by providing them a set of re-usable tools.
.
This package contains the dynamic library of the Bio++ classes
dedicated to genomic sequencing.
drwxr-xr-x root/root 0 2017-08-24 04:53 ./
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/lib/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2017-08-24 04:53 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2 -> libbpp-seq-omics.so.2.0.0
-rw-r--r-- root/root 615840 2017-08-24 04:53 ./usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.2.0.0
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/share/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-08-24 04:53 ./usr/share/doc/libbpp-seq-omics2/
-rw-r--r-- root/root 831 2017-08-24 04:53 ./usr/share/doc/libbpp-seq-omics2/changelog.Debian.gz
-rw-r--r-- root/root 5200 2017-06-08 18:23 ./usr/share/doc/libbpp-seq-omics2/changelog.gz
-rw-r--r-- root/root 3121 2017-08-24 04:53 ./usr/share/doc/libbpp-seq-omics2/copyright
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Build Architecture: armhf
Build-Space: 162720
Build-Time: 913
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 361
Job: libbpp-seq-omics_2.3.1-5
Machine Architecture: armhf
Package: libbpp-seq-omics
Package-Time: 1328
Source-Version: 2.3.1-5
Space: 162720
Status: successful
Version: 2.3.1-5
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Finished at 2017-08-29T05:04:05Z
Build needed 00:22:08, 162720k disc space