Raspbian Package Auto-Building

Build log for libbpp-seq (2.3.2-1) on armhf

libbpp-seq → 2.3.2-1 → armhf → 2018-02-13 11:09:13 

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01

+==============================================================================+
| libbpp-seq 2.3.2-1 (armhf)                   Tue, 13 Feb 2018 10:30:55 +0000 |
+==============================================================================+

Package: libbpp-seq
Version: 2.3.2-1
Source Version: 2.3.2-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/buster-staging-armhf-sbuild-9a3a7153-71b1-48e7-8fb3-2d787e1c01f4' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.5 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.3 MB]
Fetched 22.9 MB in 26s (872 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'libbpp-seq' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/libbpp-seq.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/libbpp-seq.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 331 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main libbpp-seq 2.3.2-1 (dsc) [2155 B]
Get:2 http://172.17.0.1/private buster-staging/main libbpp-seq 2.3.2-1 (tar) [324 kB]
Get:3 http://172.17.0.1/private buster-staging/main libbpp-seq 2.3.2-1 (diff) [4900 B]
Fetched 331 kB in 0s (2530 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libbpp-seq-ENXD3L/libbpp-seq-2.3.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libbpp-seq-ENXD3L' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-DtF4yU/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-DtF4yU/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-DtF4yU/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2782 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-DtF4yU/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 16 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (21.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15333 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.80), libbpp-core-dev (>= 2.3.2)
Filtered Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.80), libbpp-core-dev (>= 2.3.2)
dpkg-deb: building package 'sbuild-build-depends-libbpp-seq-dummy' in '/<<BUILDDIR>>/resolver-DtF4yU/apt_archive/sbuild-build-depends-libbpp-seq-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-libbpp-seq-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ Sources [523 B]
Get:5 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ Packages [606 B]
Fetched 2462 B in 1s (3453 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-DtF4yU/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...

Install libbpp-seq build dependencies (apt-based resolver)
----------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
  d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
  libbpp-core-dev libbpp-core3 libbsd0 libcroco3 libcurl3 libexpat1
  libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu57
  libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblzo2-2
  libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1
  libsigsegv2 libssh2-1 libssl1.0.2 libtimedate-perl libtool libuv1 libxml2 m4
  man-db po-debconf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation ninja-build dh-make dwz gettext-doc libasprintf-dev
  libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc less www-browser apparmor
  libmail-box-perl
Recommended packages:
  curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs krb5-locales publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
  d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
  libbpp-core-dev libbpp-core3 libbsd0 libcroco3 libcurl3 libexpat1
  libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu57
  libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblzo2-2
  libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1
  libsigsegv2 libssh2-1 libssl1.0.2 libtimedate-perl libtool libuv1 libxml2 m4
  man-db po-debconf sbuild-build-depends-libbpp-seq-dummy
0 upgraded, 52 newly installed, 0 to remove and 16 not upgraded.
Need to get 27.0 MB/27.5 MB of archives.
After this operation, 119 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-DtF4yU/apt_archive ./ sbuild-build-depends-libbpp-seq-dummy 0.invalid.0 [888 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.7-1 [96.8 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-4 [1012 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.9.5-1 [1285 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-6.1 [602 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-3.1 [251 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.2 [12.1 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.16-2 [59.0 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.16-2 [116 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.16-2 [265 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.16-2 [135 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.29.0-1 [70.5 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.19.1-4 [43.2 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2n-1 [887 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.58.0-2 [276 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.4-3 [94.7 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.18.0-3 [86.1 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.9.5-1 [2439 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-1 [32.2 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20171216.1 [75.9 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf d-shlibs all 0.81 [18.7 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 16 [16.3 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.3-2 [2651 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-2 [132 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.4 [1005 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libbpp-core3 armhf 2.3.2-1 [556 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libbpp-core-dev armhf 2.3.2-1 [1845 kB]
debconf: delaying package configuration, since apt-utils is not installed
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+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.29.1-13+rpi1 dpkg-dev_1.19.0.5 g++-7_7.2.0-19+b1 gcc-7_7.2.0-19+b1 libc6-dev_2.26-4+rpi1 libstdc++-7-dev_7.2.0-19+b1 libstdc++6_7.2.0-19+b1 linux-libc-dev_4.9.51-1+rpi3+b1
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gcc-5-base_5.4.1-4 gcc-7_7.2.0-19+b1 gcc-7-base_7.2.0-19+b1 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.2.4-1 gnupg-agent_2.2.4-1 gnupg-l10n_2.2.4-1 gnupg-utils_2.2.4-1 gpg_2.2.4-1 gpg-agent_2.2.4-1 gpg-wks-client_2.2.4-1 gpg-wks-server_2.2.4-1 gpgconf_2.2.4-1 gpgsm_2.2.4-1 gpgv_2.2.4-1 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.20 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-2 libapt-pkg5.0_1.6~alpha6 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-3.1 libasan4_7.2.0-19+b1 libassuan0_2.5.1-1 libatomic1_7.2.0-19+b1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.29.1-13+rpi1 libblkid1_2.30.2-0.3 libbpp-core-dev_2.3.2-1 libbpp-core3_2.3.2-1 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-4+rpi1 libc-dev-bin_2.26-4+rpi1 libc6_2.26-4+rpi1 libc6-dev_2.26-4+rpi1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_7.2.0-19+b1 libcilkrts5_7.2.0-19+b1 libcomerr2_1.43.8-2 libcroco3_0.6.12-2 libcryptsetup4_2:1.7.5-1 libcurl3_7.58.0-2 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.2-1 libdebconfclient0_0.239 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-common_2.4.89-1+rpi1 libdrm2_2.4.89-1+rpi1 libexpat1_2.2.5-3 libfakeroot_1.22-2 libfdisk1_2.30.2-0.3 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.2.0-19+b1 libgcc1_1:7.2.0-19+b1 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libglib2.0-0_2.54.3-2 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.17-1 libgomp1_7.2.0-19+b1 libgpg-error0_1.27-5 libgssapi-krb5-2_1.16-2 libhogweed4_3.4-1 libicu57_57.1-8 libidn11_1.33-2.1 libidn2-0_2.0.4-1.1 libip4tc0_1.6.1-2+b1 libisl15_0.18-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2 libkeyutils1_1.5.9-9.2 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libkrb5-3_1.16-2 libkrb5support0_1.16-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 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libsystemd0_236-2 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20171125-1 libtool_2.4.6-2 libubsan0_7.2.0-19+b1 libudev1_236-2 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.3 libuv1_1.18.0-3 libxml2_2.9.4+dfsg1-6.1 linux-base_4.5 linux-libc-dev_4.9.51-1+rpi3+b1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-4 mawk_1.3.3-17 mount_2.30.2-0.3 multiarch-support_2.26-4+rpi1 nano_2.9.2-1 ncurses-base_6.0+20171125-1 ncurses-bin_6.0+20171125-1 openssl_1.1.0g-2 passwd_1:4.5-1 patch_2.7.5-1 perl_5.26.1-4 perl-base_5.26.1-4 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-4 pinentry-curses_1.0.0-3 plymouth_0.9.3-2 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-seq-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.11 systemd_236-2 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2018c-1 udev_236-2 util-linux_2.30.2-0.3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb  8 12:52:27 2018 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libbpp-seq_2.3.2-1.dsc
dpkg-source: info: extracting libbpp-seq in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libbpp-seq_2.3.2.orig.tar.gz
dpkg-source: info: unpacking libbpp-seq_2.3.2-1.debian.tar.xz
dpkg-source: info: applying unforce-cxxflags.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-9a3a7153-71b1-48e7-8fb3-2d787e1c01f4
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package libbpp-seq
dpkg-buildpackage: info: source version 2.3.2-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build libbpp-seq-2.3.2
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   dh_auto_clean
   dh_clean
 debian/rules build-arch
dh build-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
	cd obj-arm-linux-gnueabihf && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
-- The CXX compiler identification is GNU 7.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- bpp-core 3.0.0 found:
--   static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a
--   shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
--   includes: /usr/include
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY


-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
   dh_auto_build -a
	cd obj-arm-linux-gnueabihf && make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/depend
make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-static.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-shared.dir/DependInfo.cmake --color=
Scanning dependencies of target bpp-seq-shared
Scanning dependencies of target bpp-seq-static
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp
[  1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o
[  1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp
[  1%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp
[  2%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp
[  3%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp
[  3%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp
[  4%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp
[  4%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp
[  4%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp
[  5%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp
[  6%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp
[  6%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/DNA.cpp
[  7%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/DNA.cpp
[  7%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/DefaultAlphabet.cpp
[  8%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/DefaultAlphabet.cpp
[  8%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/IntegerAlphabet.cpp
[  9%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/IntegerAlphabet.cpp
[  9%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/LetterAlphabet.cpp
[ 10%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/LexicalAlphabet.cpp
[ 11%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/LetterAlphabet.cpp
[ 11%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/LexicalAlphabet.cpp
[ 12%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp
[ 12%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp
[ 13%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp
[ 14%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NumericAlphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = unsigned int; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, unsigned int> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, unsigned int>, std::_Select1st<std::pair<const double, unsigned int> >, std::less<double>, std::allocator<std::pair<const double, unsigned int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, unsigned int> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NumericAlphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const double&>, std::tuple<>}; _Key = double; _Val = std::pair<const double, unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const double, unsigned int> >; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, unsigned int> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, unsigned int>, std::_Select1st<std::pair<const double, unsigned int> >, std::less<double>, std::allocator<std::pair<const double, unsigned int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, unsigned int> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = double; _Val = std::pair<const double, unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const double, unsigned int> >; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, unsigned int> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, unsigned int>, std::_Select1st<std::pair<const double, unsigned int> >, std::less<double>, std::allocator<std::pair<const double, unsigned int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, unsigned int> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NumericAlphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = unsigned int; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, unsigned int> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, unsigned int>, std::_Select1st<std::pair<const double, unsigned int> >, std::less<double>, std::allocator<std::pair<const double, unsigned int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, unsigned int> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NumericAlphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const double&>, std::tuple<>}; _Key = double; _Val = std::pair<const double, unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const double, unsigned int> >; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, unsigned int> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, unsigned int>, std::_Select1st<std::pair<const double, unsigned int> >, std::less<double>, std::allocator<std::pair<const double, unsigned int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, unsigned int> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/RNA.cpp
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = double; _Val = std::pair<const double, unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const double, unsigned int> >; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, unsigned int> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, unsigned int>, std::_Select1st<std::pair<const double, unsigned int> >, std::less<double>, std::allocator<std::pair<const double, unsigned int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, unsigned int> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/RNA.cpp
[ 15%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/RNY.cpp
[ 15%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp
[ 16%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/RNY.cpp
[ 17%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp
[ 17%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp
[ 18%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp
[ 18%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp
[ 19%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         __result));
                  ^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
[ 19%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         __result));
                  ^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
[ 19%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
                ^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        end(), _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  _M_allocate_and_copy(size_type __n,
  ^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::__uninitialized_copy_a(__first, __last, __result,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
        _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~      
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last,
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       _Destroy(__first, __last);
       ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last)
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  __destroy(__first, __last);
  ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __destroy(_ForwardIterator, _ForwardIterator) { }
         ^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 20%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
                ^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        end(), _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
                ^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        end(), _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  _M_allocate_and_copy(size_type __n,
  ^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::__uninitialized_copy_a(__first, __last, __result,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
        _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~      
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last,
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       _Destroy(__first, __last);
       ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  _M_allocate_and_copy(size_type __n,
  ^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::__uninitialized_copy_a(__first, __last, __result,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
        _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~      
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last,
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       _Destroy(__first, __last);
       ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last)
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  __destroy(__first, __last);
  ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last)
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  __destroy(__first, __last);
  ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __destroy(_ForwardIterator, _ForwardIterator) { }
         ^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __destroy(_ForwardIterator, _ForwardIterator) { }
         ^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 21%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp
[ 22%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
                ^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        end(), _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  _M_allocate_and_copy(size_type __n,
  ^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::__uninitialized_copy_a(__first, __last, __result,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
        _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~      
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last,
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       _Destroy(__first, __last);
       ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last)
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  __destroy(__first, __last);
  ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __destroy(_ForwardIterator, _ForwardIterator) { }
         ^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 22%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
                ^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        end(), _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  _M_allocate_and_copy(size_type __n,
  ^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::__uninitialized_copy_a(__first, __last, __result,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
        _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~      
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last,
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       _Destroy(__first, __last);
       ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last)
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  __destroy(__first, __last);
  ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __destroy(_ForwardIterator, _ForwardIterator) { }
         ^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 22%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
                ^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        end(), _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  _M_allocate_and_copy(size_type __n,
  ^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::__uninitialized_copy_a(__first, __last, __result,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
        _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~      
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last,
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       _Destroy(__first, __last);
       ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last)
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  __destroy(__first, __last);
  ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __destroy(_ForwardIterator, _ForwardIterator) { }
         ^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 23%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
                ^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        end(), _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  _M_allocate_and_copy(size_type __n,
  ^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::__uninitialized_copy_a(__first, __last, __result,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
        _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~      
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last,
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       _Destroy(__first, __last);
       ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last)
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  __destroy(__first, __last);
  ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __destroy(_ForwardIterator, _ForwardIterator) { }
         ^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 23%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
                ^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        end(), _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  _M_allocate_and_copy(size_type __n,
  ^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::__uninitialized_copy_a(__first, __last, __result,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
        _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~      
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last,
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       _Destroy(__first, __last);
       ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last)
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  __destroy(__first, __last);
  ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __destroy(_ForwardIterator, _ForwardIterator) { }
         ^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 24%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
                ^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        end(), _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  _M_allocate_and_copy(size_type __n,
  ^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::__uninitialized_copy_a(__first, __last, __result,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
        _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~      
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last,
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       _Destroy(__first, __last);
       ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last)
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  __destroy(__first, __last);
  ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __destroy(_ForwardIterator, _ForwardIterator) { }
         ^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
                ^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        end(), _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  _M_allocate_and_copy(size_type __n,
  ^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::__uninitialized_copy_a(__first, __last, __result,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
        _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~      
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last,
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       _Destroy(__first, __last);
       ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last)
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  __destroy(__first, __last);
  ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __destroy(_ForwardIterator, _ForwardIterator) { }
         ^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/App/SequenceApplicationTools.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
                ^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        end(), _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 26%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/App/SequenceApplicationTools.cpp
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  _M_allocate_and_copy(size_type __n,
  ^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::__uninitialized_copy_a(__first, __last, __result,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
        _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~      
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last,
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       _Destroy(__first, __last);
       ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last)
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  __destroy(__first, __last);
  ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __destroy(_ForwardIterator, _ForwardIterator) { }
         ^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 26%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/CodonSiteTools.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
                ^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        end(), _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  _M_allocate_and_copy(size_type __n,
  ^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
        std::__uninitialized_copy_a(__first, __last, __result,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
        _M_get_Tp_allocator());
        ~~~~~~~~~~~~~~~~~~~~~~      
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last,
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       _Destroy(__first, __last);
       ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     _Destroy(_ForwardIterator __first, _ForwardIterator __last)
     ^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  __destroy(__first, __last);
  ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __destroy(_ForwardIterator, _ForwardIterator) { }
         ^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:46,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:45:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 26%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/CodonSiteTools.cpp
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/CodonSiteTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/CodonSiteTools.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/CodonSiteTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/CodonSiteTools.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/AbstractAlphabet.h:52,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/LetterAlphabet.h:49,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/NucleicAlphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/CodonAlphabet.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/SequenceApplicationTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/SequenceApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/AbstractAlphabet.h:52,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/LetterAlphabet.h:49,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/NucleicAlphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/CodonAlphabet.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/SequenceApplicationTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/SequenceApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
[ 27%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/AbstractAlphabet.h:52,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/LetterAlphabet.h:49,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/NucleicAlphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/CodonAlphabet.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/SequenceApplicationTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/SequenceApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/AbstractAlphabet.h:52,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/LetterAlphabet.h:49,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/NucleicAlphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/CodonAlphabet.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/SequenceApplicationTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/App/SequenceApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/CodonSiteTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/CodonSiteTools.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/CodonSiteTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/CodonSiteTools.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp
[ 28%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp
[ 29%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp
[ 29%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp
[ 29%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/MapSequenceContainer.cpp
[ 30%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp
[ 31%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp
[ 31%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/MapSequenceContainer.cpp
[ 32%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp
[ 32%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SequenceContainerTools.cpp
[ 33%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerExceptions.cpp
[ 33%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerIterator.cpp
[ 34%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SequenceContainerTools.cpp
[ 35%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SequenceContainerTools.h:47,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SequenceContainerTools.h:47,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerExceptions.cpp
[ 36%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SequenceContainerTools.h:47,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SequenceContainerTools.h:47,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 37%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerIterator.cpp
[ 37%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp
[ 38%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp
In file included from /usr/include/c++/7/map:61:0,
                 from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
                 from /usr/include/Bpp/Numeric/Function/Functions.h:45,
                 from /usr/include/Bpp/Numeric/NumTools.h:43,
                 from /usr/include/Bpp/Numeric/VectorTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:47,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
                 from /usr/include/Bpp/Numeric/Function/Functions.h:45,
                 from /usr/include/Bpp/Numeric/NumTools.h:43,
                 from /usr/include/Bpp/Numeric/VectorTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:47,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
In file included from /usr/include/c++/7/map:60:0,
                 from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
                 from /usr/include/Bpp/Numeric/Function/Functions.h:45,
                 from /usr/include/Bpp/Numeric/NumTools.h:43,
                 from /usr/include/Bpp/Numeric/VectorTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:47,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
[ 38%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/VectorSiteContainer.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
[ 39%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/DNAToRNA.cpp
[ 39%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/VectorSiteContainer.cpp
In file included from /usr/include/c++/7/map:61:0,
                 from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
                 from /usr/include/Bpp/Numeric/Function/Functions.h:45,
                 from /usr/include/Bpp/Numeric/NumTools.h:43,
                 from /usr/include/Bpp/Numeric/VectorTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:47,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
                 from /usr/include/Bpp/Numeric/Function/Functions.h:45,
                 from /usr/include/Bpp/Numeric/NumTools.h:43,
                 from /usr/include/Bpp/Numeric/VectorTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:47,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
In file included from /usr/include/c++/7/map:60:0,
                 from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
                 from /usr/include/Bpp/Numeric/Function/Functions.h:45,
                 from /usr/include/Bpp/Numeric/NumTools.h:43,
                 from /usr/include/Bpp/Numeric/VectorTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:47,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/../Site.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainer.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
[ 39%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/DistanceMatrix.cpp
[ 40%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp
[ 40%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp
[ 41%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/DNAToRNA.cpp
[ 42%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp
[ 43%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp
[ 43%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp
[ 43%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/DistanceMatrix.cpp
[ 44%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp
[ 44%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp
[ 45%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp
[ 46%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp
[ 46%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp
[ 46%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp
[ 48%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp
[ 48%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp
[ 48%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp
[ 49%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp
[ 50%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp
[ 51%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp
[ 51%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp
[ 51%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp
[ 52%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp
[ 53%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 53%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp
[ 53%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
[ 54%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 55%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp
[ 56%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex1.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp
[ 56%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Clustal.cpp
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex2.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /usr/include/c++/7/stdexcept:39,
                 from /usr/include/c++/7/array:39,
                 from /usr/include/Bpp/Exceptions.h:47,
                 from /usr/include/Bpp/Io/IoFormat.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 57%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp
[ 57%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp
[ 58%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Dcse.cpp
[ 59%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Clustal.cpp
[ 59%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fasta.cpp
[ 59%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Dcse.cpp
[ 60%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/GenBank.cpp
[ 60%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/IoSequenceFactory.cpp
[ 61%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Fasta.cpp
[ 62%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Mase.cpp
[ 62%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/GenBank.cpp
[ 63%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/IoSequenceFactory.cpp
[ 63%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/MaseTools.cpp
[ 64%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/NexusIoSequence.cpp
[ 65%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Mase.cpp
[ 65%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/NexusTools.cpp
[ 65%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/MaseTools.cpp
[ 66%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/NexusIoSequence.cpp
[ 67%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o
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[ 67%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o
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[ 67%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o
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[ 68%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o
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[ 69%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Stockholm.cpp
[ 70%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/PhredPhd.cpp
[ 70%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/PhredPoly.cpp
[ 70%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp
[ 71%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/NucleicAcidsReplication.cpp
[ 71%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Sequence.cpp
[ 72%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Phylip.cpp
[ 72%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/Stockholm.cpp
[ 73%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceExceptions.cpp
[ 73%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequencePositionIterators.cpp
[ 74%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp
[ 75%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp
[ 75%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/NucleicAcidsReplication.cpp
[ 75%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceWalker.cpp
[ 76%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceWithAnnotation.cpp
[ 77%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Sequence.cpp
[ 78%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceExceptions.cpp
[ 78%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequencePositionIterators.cpp
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
[ 78%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp
[ 79%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp
[ 79%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceWalker.cpp
[ 80%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceWithQuality.cpp
[ 81%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceWithAnnotation.cpp
[ 82%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceWithQualityTools.cpp
[ 82%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Site.cpp
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__uninitialized_copy_a(__x.begin(), __x.end(),
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
           this->_M_impl._M_start,
           ~~~~~~~~~~~~~~~~~~~~~~~
           _M_get_Tp_allocator());
           ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
         __result));
                  ^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __miter_base(_Iterator __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __copy_move_a2(_II __first, _II __last, _OI __result)
     ^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
     ^~~~~~~~~~~~
[ 82%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp
[ 83%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteExceptions.cpp
[ 83%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp
[ 84%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceWithQuality.cpp
[ 85%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/StringSequenceTools.cpp
[ 85%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SequenceWithQualityTools.cpp
[ 85%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.cpp
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
[ 86%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Site.cpp
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/DNA.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AlphabetTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/StringSequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = char; _Tp = double; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const char, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/DNA.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AlphabetTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/StringSequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<char&&>, std::tuple<>}; _Key = char; _Val = std::pair<const char, double>; _KeyOfValue = std::_Select1st<std::pair<const char, double> >; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const char, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = char; _Val = std::pair<const char, double>; _KeyOfValue = std::_Select1st<std::pair<const char, double> >; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const char, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 86%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteExceptions.cpp
[ 87%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.cpp
[ 88%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp
[ 88%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g   -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Transliterator.cpp
[ 89%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/StringSequenceTools.cpp
[ 89%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.cpp
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 90%] Linking CXX static library libbpp-seq.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-static.dir/cmake_clean_target.cmake
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
   _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
                                                                     ^
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-static.dir/link.txt --verbose=1
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/ar qc libbpp-seq.a  CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o
[ 91%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.cpp
In file included from /usr/include/c++/7/vector:69:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     { return std::uninitialized_copy(__first, __last, __result); }
                                                               ^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     uninitialized_copy(_InputIterator __first, _InputIterator __last,
     ^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
  __uninit_copy(__first, __last, __result);
                                         ^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         __uninit_copy(_InputIterator __first, _InputIterator __last,
         ^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
         { return std::copy(__first, __last, __result); }
                                                     ^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     copy(_II __first, _II __last, _OI __result)
     ^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
                 from /usr/include/c++/7/bits/char_traits.h:39,
                 from /usr/include/c++/7/string:40,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/Alphabet.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolList.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SiteTools.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
     __miter_base(move_iterator<_Iterator> __it)
     ^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/DNA.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AlphabetTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/StringSequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = char; _Tp = double; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const char, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/DNA.h:44,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/Alphabet/AlphabetTools.h:43,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/StringSequenceTools.cpp:42:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<char&&>, std::tuple<>}; _Key = char; _Val = std::pair<const char, double>; _KeyOfValue = std::_Select1st<std::pair<const char, double> >; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const char, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = char; _Val = std::pair<const char, double>; _KeyOfValue = std::_Select1st<std::pair<const char, double> >; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<char, std::pair<const char, double>, std::_Select1st<std::pair<const char, double> >, std::less<char>, std::allocator<std::pair<const char, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const char, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 91%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++  -Dbpp_seq_shared_EXPORTS -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIC   -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Seq/Transliterator.cpp
/usr/bin/ranlib libbpp-seq.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 91%] Built target bpp-seq-static
In file included from /usr/include/c++/7/map:61:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
    ^~~
In file included from /usr/include/c++/7/map:60:0,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.h:48,
                 from /<<PKGBUILDDIR>>/src/Bpp/Seq/SymbolListTools.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 92%] Linking CXX shared library libbpp-seq.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-shared.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq.so.11 -o libbpp-seq.so.11.0.0 CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0 
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq.so.11.0.0 libbpp-seq.so.11 libbpp-seq.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 92%] Built target bpp-seq-shared
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_alignment_scores.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_alphabets.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_bowker.dir/DependInfo.cmake --color=
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[ 93%] Building CXX object test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIE   -o CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -c /<<PKGBUILDDIR>>/test/test_alphabets.cpp
[ 93%] Building CXX object test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIE   -o CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -c /<<PKGBUILDDIR>>/test/test_alignment_scores.cpp
[ 94%] Building CXX object test/CMakeFiles/test_io.dir/test_io.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIE   -o CMakeFiles/test_io.dir/test_io.cpp.o -c /<<PKGBUILDDIR>>/test/test_io.cpp
[ 95%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIE   -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /<<PKGBUILDDIR>>/test/test_bowker.cpp
[ 95%] Linking CXX executable test_alphabets
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/usr/bin/c++  -std=c++11 -Wno-deprecated -g  -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o  -o test_alphabets -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0 
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[ 98%] Building CXX object test/CMakeFiles/test_walker.dir/test_walker.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIE   -o CMakeFiles/test_walker.dir/test_walker.cpp.o -c /<<PKGBUILDDIR>>/test/test_walker.cpp
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/usr/bin/c++  -std=c++11 -Wno-deprecated -g  -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_bowker.dir/test_bowker.cpp.o  -o test_bowker -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0 
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++   -I/<<PKGBUILDDIR>>/src  -std=c++11 -Wno-deprecated -g -fPIE   -o CMakeFiles/test_sequences.dir/test_sequences.cpp.o -c /<<PKGBUILDDIR>>/test/test_sequences.cpp
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[ 99%] Linking CXX executable test_containers
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_containers.dir/link.txt --verbose=1
/usr/bin/c++  -std=c++11 -Wno-deprecated -g  -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_containers.dir/test_containers.cpp.o  -o test_containers -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0 
[100%] Linking CXX executable test_walker
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_walker.dir/link.txt --verbose=1
/usr/bin/c++  -std=c++11 -Wno-deprecated -g  -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_walker.dir/test_walker.cpp.o  -o test_walker -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target test_containers
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target test_walker
[100%] Linking CXX executable test_sequences
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequences.dir/link.txt --verbose=1
/usr/bin/c++  -std=c++11 -Wno-deprecated -g  -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_sequences.dir/test_sequences.cpp.o  -o test_sequences -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target test_sequences
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
   dh_auto_test -a
	cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=-j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
    Start 1: test_alignment_scores
    Start 2: test_alphabets
    Start 3: test_bowker
    Start 4: test_containers
1/7 Test #2: test_alphabets ...................   Passed    0.11 sec
2/7 Test #1: test_alignment_scores ............   Passed    0.12 sec
3/7 Test #4: test_containers ..................   Passed    0.18 sec
    Start 5: test_io
    Start 6: test_sequences
    Start 7: test_walker
4/7 Test #6: test_sequences ...................   Passed    0.10 sec
5/7 Test #7: test_walker ......................   Passed    0.28 sec
6/7 Test #5: test_io ..........................   Passed    1.29 sec
7/7 Test #3: test_bowker ......................   Passed  725.52 sec

100% tests passed, 0 tests failed out of 7

Total Test time (real) = 725.55 sec
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
   dh_auto_install -a
	cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/depend
make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-static.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-shared.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/CMakeFiles/bpp-seq-static.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/CMakeFiles/bpp-seq-shared.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 46%] Built target bpp-seq-static
[ 92%] Built target bpp-seq-shared
make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/depend
make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/depend
make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/depend
make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_io.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_alignment_scores.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_alphabets.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_bowker.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_alignment_scores.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_alphabets.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_io.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_bowker.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 93%] Built target test_alignment_scores
make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_containers.dir/DependInfo.cmake --color=
[ 94%] Built target test_alphabets
make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/depend
[ 95%] Built target test_io
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_walker.dir/DependInfo.cmake --color=
make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_sequences.dir/DependInfo.cmake --color=
[ 96%] Built target test_bowker
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_containers.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_walker.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_sequences.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 97%] Built target test_containers
[ 99%] Built target test_walker
[100%] Built target test_sequences
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/bpp-seq-config.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/bpp-seq-config-version.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/Alphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetNumericState.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetState.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/DNA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/LexicalAlphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NumericAlphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/RNA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/RNY.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Alphabet/WordAlphabet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/App
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/App/SequenceApplicationTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/CodonSiteTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/MapSequenceContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerExceptions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/VectorSequenceContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Container/VectorSiteContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/CoreSequence.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/CoreSite.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/DNAToRNA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/DistanceMatrix.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/GeneticCode
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/GeneticCode.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractIAlignment.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractISequence.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractOAlignment.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractOSequence.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlignmentReaderFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlignmentWriterFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlphabetIndex1Format.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Clustal.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Dcse.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Fasta.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/GenBank.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/ISequence.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/ISequenceStream.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequence.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequenceFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequenceStream.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Mase.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/MaseTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/NexusIoSequence.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/NexusTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/OSequence.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/OSequenceStream.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/PhredPhd.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/PhredPoly.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Phylip.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/SequenceFileIndex.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/Stockholm.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Io/StreamSequenceIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/NucleicAcidsReplication.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Sequence.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SequenceExceptions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SequenceIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SequencePositionIterators.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SequenceTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SequenceWalker.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SequenceWithAnnotation.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SequenceWithAnnotationTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SequenceWithQuality.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SequenceWithQualityTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Site.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SiteExceptions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SiteIterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SiteTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/StringSequenceTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SymbolList.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/SymbolListTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Seq/Transliterator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/bpp-seq-targets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/bpp-seq-targets-none.cmake
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# Broken header, don't install (if we do, the postinst will pull it
# into generic include files)
dh_install
d-shlibmove --commit \
	    --multiarch \
	    --devunversioned \
	    --exclude-la \
                    --movedev debian/tmp/usr/include/* usr/include \
                    --movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \
                    debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
 --> libbpp-core-dev package exists.
set -e
install -d -m 755 debian/libbpp-seq-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbpp-seq11/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.a debian/libbpp-seq-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.so debian/libbpp-seq-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11 debian/libbpp-seq11/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 debian/libbpp-seq11/usr/lib/arm-linux-gnueabihf
PKGDEV=libbpp-seq-dev
PKGSHL=libbpp-seq11
install -d -m 755 debian/libbpp-seq-dev/usr/include
mv debian/tmp/usr/include/Bpp debian/libbpp-seq-dev/usr/include
install -d -m 755 debian/libbpp-seq-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-seq-dev/usr/lib/arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-seq11/usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 found in none of the libraries
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: package libbpp-seq-dev: unused substitution variable ${devlibs:Depends}
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'libbpp-seq-dev' in '../libbpp-seq-dev_2.3.2-1_armhf.deb'.
dpkg-deb: building package 'libbpp-seq11' in '../libbpp-seq11_2.3.2-1_armhf.deb'.
dpkg-deb: building package 'libbpp-seq11-dbgsym' in '../libbpp-seq11-dbgsym_2.3.2-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libbpp-seq_2.3.2-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build libbpp-seq-2.3.2
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-02-13T11:05:44Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


libbpp-seq_2.3.2-1_armhf.changes:
---------------------------------

Format: 1.8
Date: Mon, 05 Feb 2018 17:36:38 +0200
Source: libbpp-seq
Binary: libbpp-seq-dev libbpp-seq11
Architecture: armhf
Version: 2.3.2-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Julien Dutheil <julien.dutheil@univ-montp2.fr>
Description:
 libbpp-seq-dev - Bio++ Sequence library development files
 libbpp-seq11 - Bio++ Sequence library
Changes:
 libbpp-seq (2.3.2-1) unstable; urgency=medium
 .
   [ Julien Dutheil ]
   * New upstream version
 .
   [ Andreas Tille ]
   * Standards-Version: 4.1.3
   * cme fix dpkg-control
   * debhelper 11
Checksums-Sha1:
 31a7ccdd2f1dfa9f4a0c9935ebbf850d4c7d00b4 1636872 libbpp-seq-dev_2.3.2-1_armhf.deb
 2f295e82ecb46a38d4c79db32cc31495060466b1 4594120 libbpp-seq11-dbgsym_2.3.2-1_armhf.deb
 ebcd07b130f96c760f47b6e7d67aa9901e5f371c 437272 libbpp-seq11_2.3.2-1_armhf.deb
 f3afe976a071c508ea9c8f7844c52b8103ea098b 6374 libbpp-seq_2.3.2-1_armhf.buildinfo
Checksums-Sha256:
 7026cc53da81f795e14ef7d133e94b886b8c022498c903eee5a82f6d2b0c906b 1636872 libbpp-seq-dev_2.3.2-1_armhf.deb
 568c78ff798d2414beec2663857be7146576abb7de834994cc7c2a4f17cebaed 4594120 libbpp-seq11-dbgsym_2.3.2-1_armhf.deb
 abb95282c39684b9c0f1a362a797dabe004533ece749206ecbca75e228905b99 437272 libbpp-seq11_2.3.2-1_armhf.deb
 ba9f403b8f3ac369e9c10d90962d14e46c37e2f574532cb471cfb47e6eb6186d 6374 libbpp-seq_2.3.2-1_armhf.buildinfo
Files:
 32acea1f4ff21604bb2d0245639b1085 1636872 libdevel optional libbpp-seq-dev_2.3.2-1_armhf.deb
 4609982992b642e75e4cad300ece50f0 4594120 debug optional libbpp-seq11-dbgsym_2.3.2-1_armhf.deb
 6c16eefbffe8ddc6c4cdcd2d5eaa5066 437272 libs optional libbpp-seq11_2.3.2-1_armhf.deb
 8c07dd36063577f6325b6c76bd798e72 6374 science optional libbpp-seq_2.3.2-1_armhf.buildinfo

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libbpp-seq-dev_2.3.2-1_armhf.deb
--------------------------------

 new Debian package, version 2.0.
 size 1636872 bytes: control archive=4360 bytes.
     868 bytes,    19 lines      control              
   10990 bytes,   135 lines      md5sums              
 Package: libbpp-seq-dev
 Source: libbpp-seq
 Version: 2.3.2-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 24697
 Depends: libbpp-seq11 (= 2.3.2-1), libbpp-core-dev (>= 2.3.2)
 Section: libdevel
 Priority: optional
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
 Description: Bio++ Sequence library development files
  Bio++ is a set of C++ libraries for Bioinformatics, including sequence
  analysis, phylogenetics, molecular evolution and population genetics.
  Bio++ is Object Oriented and is designed to be both easy to use and
  computer efficient. Bio++ intends to help programmers to write computer
  expensive programs, by providing them a set of re-usable tools.
  .
  This package contains the static library and the header files of Bio++
  classes for sequence analysis classes.

drwxr-xr-x root/root         0 2018-02-05 15:36 ./
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/include/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/include/Bpp/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/include/Bpp/Seq/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/include/Bpp/Seq/Alphabet/
-rw-r--r-- root/root      9381 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h
-rw-r--r-- root/root     17538 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/Alphabet.h
-rw-r--r-- root/root      6291 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h
-rw-r--r-- root/root      2835 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/AlphabetNumericState.h
-rw-r--r-- root/root      3834 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/AlphabetState.h
-rw-r--r-- root/root      8367 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/AlphabetTools.h
-rw-r--r-- root/root      2956 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h
-rw-r--r-- root/root      4567 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h
-rw-r--r-- root/root     13148 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h
-rw-r--r-- root/root      3181 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/DNA.h
-rw-r--r-- root/root      3102 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h
-rw-r--r-- root/root      2984 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h
-rw-r--r-- root/root      4206 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h
-rw-r--r-- root/root      3307 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/LexicalAlphabet.h
-rw-r--r-- root/root      8931 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h
-rw-r--r-- root/root      4181 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h
-rw-r--r-- root/root      3962 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/NumericAlphabet.h
-rw-r--r-- root/root      4912 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h
-rw-r--r-- root/root      2784 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h
-rw-r--r-- root/root      3130 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/RNA.h
-rw-r--r-- root/root      4284 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/RNY.h
-rw-r--r-- root/root     15826 2017-12-09 15:40 ./usr/include/Bpp/Seq/Alphabet/WordAlphabet.h
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/include/Bpp/Seq/AlphabetIndex/
-rw-r--r-- root/root      5112 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h
-rw-r--r-- root/root      4349 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h
-rw-r--r-- root/root      3698 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h
-rw-r--r-- root/root      3696 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h
-rw-r--r-- root/root      3619 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h
-rw-r--r-- root/root      3340 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h
-rw-r--r-- root/root      3982 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h
-rw-r--r-- root/root      3533 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h
-rw-r--r-- root/root      3698 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h
-rw-r--r-- root/root      3725 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h
-rw-r--r-- root/root      3724 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h
-rw-r--r-- root/root      3593 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h
-rw-r--r-- root/root      3562 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h
-rw-r--r-- root/root      3083 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h
-rw-r--r-- root/root      3416 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h
-rw-r--r-- root/root      3275 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h
-rw-r--r-- root/root      3610 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h
-rw-r--r-- root/root      5580 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h
-rw-r--r-- root/root      4184 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h
-rw-r--r-- root/root      4145 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h
-rw-r--r-- root/root      4137 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h
-rw-r--r-- root/root      3730 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h
-rw-r--r-- root/root      4238 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h
-rw-r--r-- root/root      3341 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h
-rw-r--r-- root/root      3212 2017-12-09 15:40 ./usr/include/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/include/Bpp/Seq/App/
-rw-r--r-- root/root     12419 2017-12-09 15:40 ./usr/include/Bpp/Seq/App/SequenceApplicationTools.h
-rw-r--r-- root/root     11040 2017-12-09 15:40 ./usr/include/Bpp/Seq/CodonSiteTools.h
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/include/Bpp/Seq/Container/
-rw-r--r-- root/root      5206 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h
-rw-r--r-- root/root      7470 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h
-rw-r--r-- root/root     12860 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h
-rw-r--r-- root/root      8707 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/MapSequenceContainer.h
-rw-r--r-- root/root      9485 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h
-rw-r--r-- root/root     11413 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/SequenceContainer.h
-rw-r--r-- root/root      4361 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h
-rw-r--r-- root/root      3137 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/SequenceContainerIterator.h
-rw-r--r-- root/root     13016 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/SequenceContainerTools.h
-rw-r--r-- root/root      6991 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/SiteContainer.h
-rw-r--r-- root/root      2944 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/SiteContainerExceptions.h
-rw-r--r-- root/root      3884 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/SiteContainerIterator.h
-rw-r--r-- root/root     23703 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/SiteContainerTools.h
-rw-r--r-- root/root     10412 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/VectorSequenceContainer.h
-rw-r--r-- root/root     10295 2017-12-09 15:40 ./usr/include/Bpp/Seq/Container/VectorSiteContainer.h
-rw-r--r-- root/root      6403 2017-12-09 15:40 ./usr/include/Bpp/Seq/CoreSequence.h
-rw-r--r-- root/root      4280 2017-12-09 15:40 ./usr/include/Bpp/Seq/CoreSite.h
-rw-r--r-- root/root      3378 2017-12-09 15:40 ./usr/include/Bpp/Seq/DNAToRNA.h
-rw-r--r-- root/root      7414 2017-12-09 15:40 ./usr/include/Bpp/Seq/DistanceMatrix.h
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/include/Bpp/Seq/GeneticCode/
-rw-r--r-- root/root      3710 2017-12-09 15:40 ./usr/include/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h
-rw-r--r-- root/root      3581 2017-12-09 15:40 ./usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h
-rw-r--r-- root/root      8395 2017-12-09 15:40 ./usr/include/Bpp/Seq/GeneticCode/GeneticCode.h
-rw-r--r-- root/root      3697 2017-12-09 15:40 ./usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h
-rw-r--r-- root/root      3727 2017-12-09 15:40 ./usr/include/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h
-rw-r--r-- root/root      3525 2017-12-09 15:40 ./usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h
-rw-r--r-- root/root      3784 2017-12-09 15:40 ./usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h
-rw-r--r-- root/root      3539 2017-12-09 15:40 ./usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/include/Bpp/Seq/Io/
-rw-r--r-- root/root      5562 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/AbstractIAlignment.h
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-rw-r--r-- root/root      3329 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h
-rw-r--r-- root/root      3357 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h
-rw-r--r-- root/root      3331 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h
-rw-r--r-- root/root      4860 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/Clustal.h
-rw-r--r-- root/root      3306 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/Dcse.h
-rw-r--r-- root/root      7593 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/Fasta.h
-rw-r--r-- root/root      2716 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/GenBank.h
-rw-r--r-- root/root      4331 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/ISequence.h
-rw-r--r-- root/root      2594 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/ISequenceStream.h
-rw-r--r-- root/root      2156 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/IoSequence.h
-rw-r--r-- root/root      4364 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/IoSequenceFactory.h
-rw-r--r-- root/root      2057 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/IoSequenceStream.h
-rw-r--r-- root/root      8650 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/Mase.h
-rw-r--r-- root/root      6002 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/MaseTools.h
-rw-r--r-- root/root      4795 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/NexusIoSequence.h
-rw-r--r-- root/root      2981 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/NexusTools.h
-rw-r--r-- root/root      4356 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/OSequence.h
-rw-r--r-- root/root      2499 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/OSequenceStream.h
-rw-r--r-- root/root      4909 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/PhredPhd.h
-rw-r--r-- root/root      2936 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/PhredPoly.h
-rw-r--r-- root/root      6835 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/Phylip.h
-rw-r--r-- root/root      2625 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/SequenceFileIndex.h
-rw-r--r-- root/root      3788 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/Stockholm.h
-rw-r--r-- root/root      4174 2017-12-09 15:40 ./usr/include/Bpp/Seq/Io/StreamSequenceIterator.h
-rw-r--r-- root/root      3717 2017-12-09 15:40 ./usr/include/Bpp/Seq/NucleicAcidsReplication.h
-rw-r--r-- root/root     11621 2017-12-09 15:40 ./usr/include/Bpp/Seq/Sequence.h
-rw-r--r-- root/root      4598 2017-12-09 15:40 ./usr/include/Bpp/Seq/SequenceExceptions.h
-rw-r--r-- root/root      3171 2017-12-09 15:40 ./usr/include/Bpp/Seq/SequenceIterator.h
-rw-r--r-- root/root      6708 2017-12-09 15:40 ./usr/include/Bpp/Seq/SequencePositionIterators.h
-rw-r--r-- root/root     17072 2017-12-09 15:40 ./usr/include/Bpp/Seq/SequenceTools.h
-rw-r--r-- root/root      2926 2017-12-09 15:40 ./usr/include/Bpp/Seq/SequenceWalker.h
-rw-r--r-- root/root     14837 2017-12-09 15:40 ./usr/include/Bpp/Seq/SequenceWithAnnotation.h
-rw-r--r-- root/root      7094 2017-12-09 15:40 ./usr/include/Bpp/Seq/SequenceWithAnnotationTools.h
-rw-r--r-- root/root     26451 2017-12-09 15:40 ./usr/include/Bpp/Seq/SequenceWithQuality.h
-rw-r--r-- root/root      7347 2017-12-09 15:40 ./usr/include/Bpp/Seq/SequenceWithQualityTools.h
-rw-r--r-- root/root      5848 2017-12-09 15:40 ./usr/include/Bpp/Seq/Site.h
-rw-r--r-- root/root      3355 2017-12-09 15:40 ./usr/include/Bpp/Seq/SiteExceptions.h
-rw-r--r-- root/root      2354 2017-12-09 15:40 ./usr/include/Bpp/Seq/SiteIterator.h
-rw-r--r-- root/root      8688 2017-12-09 15:40 ./usr/include/Bpp/Seq/SiteTools.h
-rw-r--r-- root/root      7669 2017-12-09 15:40 ./usr/include/Bpp/Seq/StringSequenceTools.h
-rw-r--r-- root/root     22644 2017-12-09 15:40 ./usr/include/Bpp/Seq/SymbolList.h
-rw-r--r-- root/root      8342 2017-12-09 15:40 ./usr/include/Bpp/Seq/SymbolListTools.h
-rw-r--r-- root/root      5580 2017-12-09 15:40 ./usr/include/Bpp/Seq/Transliterator.h
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/lib/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/lib/arm-linux-gnueabihf/cmake/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/
-rw-r--r-- root/root      1610 2018-02-05 15:36 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/bpp-seq-config-version.cmake
-rw-r--r-- root/root      2261 2018-02-05 15:36 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/bpp-seq-config.cmake
-rw-r--r-- root/root      1470 2018-02-05 15:36 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/bpp-seq-targets-none.cmake
-rw-r--r-- root/root      3928 2018-02-05 15:36 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/bpp-seq-targets.cmake
-rw-r--r-- root/root  24430820 2018-02-05 15:36 ./usr/lib/arm-linux-gnueabihf/libbpp-seq.a
lrwxrwxrwx root/root         0 2018-02-05 15:36 ./usr/lib/arm-linux-gnueabihf/libbpp-seq.so -> libbpp-seq.so.11
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/share/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/share/doc/libbpp-seq-dev/
-rw-r--r-- root/root      1529 2018-02-05 15:36 ./usr/share/doc/libbpp-seq-dev/changelog.Debian.gz
-rw-r--r-- root/root      5033 2017-12-09 15:40 ./usr/share/doc/libbpp-seq-dev/changelog.gz
-rw-r--r-- root/root      3115 2018-02-05 15:36 ./usr/share/doc/libbpp-seq-dev/copyright


libbpp-seq11-dbgsym_2.3.2-1_armhf.deb
-------------------------------------

 new Debian package, version 2.0.
 size 4594120 bytes: control archive=552 bytes.
     406 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: libbpp-seq11-dbgsym
 Source: libbpp-seq
 Version: 2.3.2-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 5375
 Depends: libbpp-seq11 (= 2.3.2-1)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libbpp-seq11
 Build-Ids: a5419b7d50276a91440c07f78aaefea2309877a9

drwxr-xr-x root/root         0 2018-02-05 15:36 ./
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/lib/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/lib/debug/.build-id/a5/
-rw-r--r-- root/root   5492836 2018-02-05 15:36 ./usr/lib/debug/.build-id/a5/419b7d50276a91440c07f78aaefea2309877a9.debug
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/share/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-02-05 15:36 ./usr/share/doc/libbpp-seq11-dbgsym -> libbpp-seq11


libbpp-seq11_2.3.2-1_armhf.deb
------------------------------

 new Debian package, version 2.0.
 size 437272 bytes: control archive=1020 bytes.
     841 bytes,    19 lines      control              
     309 bytes,     4 lines      md5sums              
      27 bytes,     1 lines      shlibs               
      67 bytes,     2 lines      triggers             
 Package: libbpp-seq11
 Source: libbpp-seq
 Version: 2.3.2-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2540
 Depends: libbpp-core3 (>= 2.3.2), libc6 (>= 2.23), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
 Description: Bio++ Sequence library
  Bio++ is a set of C++ libraries for Bioinformatics, including sequence
  analysis, phylogenetics, molecular evolution and population genetics.
  Bio++ is Object Oriented and is designed to be both easy to use and
  computer efficient. Bio++ intends to help programmers to write computer
  expensive programs, by providing them a set of re-usable tools.
  .
  This package contains the Bio++ classes for sequence analysis.

drwxr-xr-x root/root         0 2018-02-05 15:36 ./
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/lib/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root         0 2018-02-05 15:36 ./usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11 -> libbpp-seq.so.11.0.0
-rw-r--r-- root/root   2577828 2018-02-05 15:36 ./usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/share/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-02-05 15:36 ./usr/share/doc/libbpp-seq11/
-rw-r--r-- root/root      1529 2018-02-05 15:36 ./usr/share/doc/libbpp-seq11/changelog.Debian.gz
-rw-r--r-- root/root      5033 2017-12-09 15:40 ./usr/share/doc/libbpp-seq11/changelog.gz
-rw-r--r-- root/root      3115 2018-02-05 15:36 ./usr/share/doc/libbpp-seq11/copyright


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| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 212584
Build-Time: 1646
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 390
Job: libbpp-seq_2.3.2-1
Machine Architecture: armhf
Package: libbpp-seq
Package-Time: 2089
Source-Version: 2.3.2-1
Space: 212584
Status: successful
Version: 2.3.2-1
--------------------------------------------------------------------------------
Finished at 2018-02-13T11:05:44Z
Build needed 00:34:49, 212584k disc space