libbpp-phyl →
2.3.2-2 →
armhf → 2018-02-14 17:46:05
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| libbpp-phyl 2.3.2-2 (armhf) Wed, 14 Feb 2018 15:01:55 +0000 |
+==============================================================================+
Package: libbpp-phyl
Version: 2.3.2-2
Source Version: 2.3.2-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-0dfe9afd-6656-4034-8e53-2f4f2f3a110c' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.6 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.3 MB]
Fetched 22.9 MB in 25s (908 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http: aptMethod::Configuration: could not load seccomp policy: Invalid argument
W: store: aptMethod::Configuration: could not load seccomp policy: Invalid argument
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libbpp-phyl' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/libbpp-phyl.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/libbpp-phyl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 610 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main libbpp-phyl 2.3.2-2 (dsc) [2167 B]
Get:2 http://172.17.0.1/private buster-staging/main libbpp-phyl 2.3.2-2 (tar) [602 kB]
Get:3 http://172.17.0.1/private buster-staging/main libbpp-phyl 2.3.2-2 (diff) [5252 B]
Fetched 610 kB in 0s (4668 kB/s)
Download complete and in download only mode
W: http: aptMethod::Configuration: could not load seccomp policy: Invalid argument
I: NOTICE: Log filtering will replace 'build/libbpp-phyl-ZIZFgL/libbpp-phyl-2.3.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libbpp-phyl-ZIZFgL' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-riWlmn/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-riWlmn/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-riWlmn/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-riWlmn/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-riWlmn/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-riWlmn/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-riWlmn/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-riWlmn/apt_archive ./ Packages [434 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
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Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 21 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-riWlmn/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 15333 files and directories currently installed.)
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Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
W: copy: aptMethod::Configuration: could not load seccomp policy: Invalid argument
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.80), libbpp-seq-dev (>= 2.3.2)
Filtered Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.80), libbpp-seq-dev (>= 2.3.2)
dpkg-deb: building package 'sbuild-build-depends-libbpp-phyl-dummy' in '/<<BUILDDIR>>/resolver-riWlmn/apt_archive/sbuild-build-depends-libbpp-phyl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libbpp-phyl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-riWlmn/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-riWlmn/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-riWlmn/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-riWlmn/apt_archive ./ Sources [524 B]
Get:5 copy:/<<BUILDDIR>>/resolver-riWlmn/apt_archive ./ Packages [606 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: copy: aptMethod::Configuration: could not load seccomp policy: Invalid argument
W: store: aptMethod::Configuration: could not load seccomp policy: Invalid argument
Reading package lists...
Install libbpp-phyl build dependencies (apt-based resolver)
-----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbpp-core-dev libbpp-core3 libbpp-seq-dev libbpp-seq11 libbsd0 libcroco3
libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1
libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libssl1.0.2
libtimedate-perl libtool libuv1 libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation ninja-build dh-make dwz gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc less www-browser apparmor
libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbpp-core-dev libbpp-core3 libbpp-seq-dev libbpp-seq11 libbsd0 libcroco3
libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1
libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libssl1.0.2
libtimedate-perl libtool libuv1 libxml2 m4 man-db po-debconf
sbuild-build-depends-libbpp-phyl-dummy
0 upgraded, 54 newly installed, 0 to remove and 21 not upgraded.
Need to get 29.1 MB/29.5 MB of archives.
After this operation, 147 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-riWlmn/apt_archive ./ sbuild-build-depends-libbpp-phyl-dummy 0.invalid.0 [888 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.7-1 [96.8 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-4 [1012 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.9.5-1 [1285 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-6.1 [602 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-3.1 [251 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.2 [12.1 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.16-2 [59.0 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.16-2 [116 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.16-2 [265 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.16-2 [135 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.29.0-1 [70.5 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.19.1-4 [43.2 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2n-1 [887 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.58.0-2 [276 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.4-3 [94.7 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.18.0-3 [86.1 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.9.5-1 [2439 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-1 [32.2 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20171216.1 [75.9 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf d-shlibs all 0.81 [18.7 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 16 [16.3 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.3-2 [2651 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-2 [132 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.4 [1005 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libbpp-core3 armhf 2.3.2-1 [556 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libbpp-core-dev armhf 2.3.2-1 [1845 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libbpp-seq11 armhf 2.3.2-1 [437 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libbpp-seq-dev armhf 2.3.2-1 [1637 kB]
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+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.29.1-13+rpi1 dpkg-dev_1.19.0.5 g++-7_7.2.0-19+b1 gcc-7_7.2.0-19+b1 libc6-dev_2.26-4+rpi1 libstdc++-7-dev_7.2.0-19+b1 libstdc++6_7.2.0-19+b1 linux-libc-dev_4.9.51-1+rpi3+b1
Package versions: adduser_3.116 apt_1.6~alpha6 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20171216.1 base-files_10.1+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-13+rpi1 binutils-arm-linux-gnueabihf_2.29.1-13+rpi1 binutils-common_2.29.1-13+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.30.2-0.3 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 cmake_3.9.5-1 cmake-data_3.9.5-1 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-19+b1 d-shlibs_0.81 dash_0.5.8-2.10 debconf_1.5.65 debhelper_11.1.4 debianutils_4.8.4 dh-autoreconf_16 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.4-1 dmsetup_2:1.02.145-4.1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.43.8-2 e2fsprogs_1.43.8-2 e2fsprogs-l10n_1.43.8-2 fakeroot_1.22-2 fdisk_2.30.2-0.3 file_1:5.32-1 findutils_4.6.0+git+20170828-2 g++_4:7.2.0-1d1 g++-7_7.2.0-19+b1 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-19+b1 gcc-7-base_7.2.0-19+b1 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.2.4-1 gnupg-agent_2.2.4-1 gnupg-l10n_2.2.4-1 gnupg-utils_2.2.4-1 gpg_2.2.4-1 gpg-agent_2.2.4-1 gpg-wks-client_2.2.4-1 gpg-wks-server_2.2.4-1 gpgconf_2.2.4-1 gpgsm_2.2.4-1 gpgv_2.2.4-1 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.20 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-2 libapt-pkg5.0_1.6~alpha6 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-3.1 libasan4_7.2.0-19+b1 libassuan0_2.5.1-1 libatomic1_7.2.0-19+b1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.29.1-13+rpi1 libblkid1_2.30.2-0.3 libbpp-core-dev_2.3.2-1 libbpp-core3_2.3.2-1 libbpp-seq-dev_2.3.2-1 libbpp-seq11_2.3.2-1 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-4+rpi1 libc-dev-bin_2.26-4+rpi1 libc6_2.26-4+rpi1 libc6-dev_2.26-4+rpi1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_7.2.0-19+b1 libcilkrts5_7.2.0-19+b1 libcomerr2_1.43.8-2 libcroco3_0.6.12-2 libcryptsetup4_2:1.7.5-1 libcurl3_7.58.0-2 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.2-1 libdebconfclient0_0.239 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-common_2.4.89-1+rpi1 libdrm2_2.4.89-1+rpi1 libexpat1_2.2.5-3 libfakeroot_1.22-2 libfdisk1_2.30.2-0.3 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.2.0-19+b1 libgcc1_1:7.2.0-19+b1 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libglib2.0-0_2.54.3-2 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.17-1 libgomp1_7.2.0-19+b1 libgpg-error0_1.27-5 libgssapi-krb5-2_1.16-2 libhogweed4_3.4-1 libicu57_57.1-8 libidn11_1.33-2.1 libidn2-0_2.0.4-1.1 libip4tc0_1.6.1-2+b1 libisl15_0.18-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2 libkeyutils1_1.5.9-9.2 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libkrb5-3_1.16-2 libkrb5support0_1.16-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 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libstdc++-7-dev_7.2.0-19+b1 libstdc++6_7.2.0-19+b1 libsystemd0_236-2 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20171125-1 libtool_2.4.6-2 libubsan0_7.2.0-19+b1 libudev1_236-2 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.3 libuv1_1.18.0-3 libxml2_2.9.4+dfsg1-6.1 linux-base_4.5 linux-libc-dev_4.9.51-1+rpi3+b1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-4 mawk_1.3.3-17 mount_2.30.2-0.3 multiarch-support_2.26-4+rpi1 nano_2.9.2-1 ncurses-base_6.0+20171125-1 ncurses-bin_6.0+20171125-1 openssl_1.1.0g-2 passwd_1:4.5-1 patch_2.7.5-1 perl_5.26.1-4 perl-base_5.26.1-4 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-4 pinentry-curses_1.0.0-3 plymouth_0.9.3-2 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-phyl-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.11 systemd_236-2 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2018c-1 udev_236-2 util-linux_2.30.2-0.3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Feb 9 12:46:33 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libbpp-phyl_2.3.2-2.dsc
dpkg-source: info: extracting libbpp-phyl in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libbpp-phyl_2.3.2.orig.tar.gz
dpkg-source: info: unpacking libbpp-phyl_2.3.2-2.debian.tar.xz
dpkg-source: info: applying unforce-cxxflags.patch
dpkg-source: info: applying correct_constructors_inheritance.patch
dpkg-source: info: applying fix_covariant_return.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-0dfe9afd-6656-4034-8e53-2f4f2f3a110c
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libbpp-phyl
dpkg-buildpackage: info: source version 2.3.2-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build libbpp-phyl-2.3.2
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
-- The CXX compiler identification is GNU 7.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- bpp-core 3.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
-- includes: /usr/include
-- bpp-seq 11.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0
-- includes: /usr/include
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/depend
make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-shared.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-static.dir/DependInfo.cmake --color=
Scanning dependencies of target bpp-phyl-shared
Scanning dependencies of target bpp-phyl-static
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/build
make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 0%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o
[ 0%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o
[ 0%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o
[ 0%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 0%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionTools.cpp
[ 0%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionTools.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:61:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 1%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp
[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp
In file included from /usr/include/c++/7/map:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp
[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp
[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 3%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 4%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp
[ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
[ 4%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
[ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp
[ 4%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
[ 5%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 6%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp
[ 6%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp
[ 6%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
[ 6%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 6%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 7%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp
[ 7%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp
[ 8%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/TreeDrawingListener.cpp
[ 8%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/TreeDrawingListener.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 8%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp
[ 8%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp
[ 8%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp
[ 8%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp
[ 8%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp
[ 9%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 9%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 10%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp
[ 10%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp
[ 10%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 11%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp
[ 11%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp
[ 11%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp
[ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
[ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTreeFactory.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::reserve(std::vector<_Tp, _Alloc>::size_type) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:73:12: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__n,
^~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = std::move_iterator<double*>; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Newick.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/NexusIoTree.cpp
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp
[ 13%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp
[ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp
[ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
[ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp
[ 15%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp
[ 16%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp
[ 16%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 16%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
[ 16%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h: In member function 'void bpp::DRASDRTreeLikelihoodNodeData::eraseNeighborArrays()':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:211:30: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
nodeDLikelihoods_.erase(nodeDLikelihoods_.begin(), nodeDLikelihoods_.end());
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:212:31: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
nodeD2Likelihoods_.erase(nodeD2Likelihoods_.begin(), nodeD2Likelihoods_.end());
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1206:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
erase(const_iterator __first, const_iterator __last)
^~~~~
/usr/include/c++/7/bits/stl_vector.h:1206:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1210:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:165:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:165:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/vector.tcc:171:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE3(__last, end(), __first);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::move(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__miter_base(__last), __result);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = true; _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
[ 16%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
[ 16%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp
[ 18%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp
[ 18%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp: In member function 'virtual double bpp::DRHomogeneousMixedTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:262:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(la.begin(), la.end());
~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4836:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1948:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1952:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_RandomAccessIterator __cut =
^~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1886:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1934:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1923:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h:1851:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1674:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1675:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__a, __b))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:91:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:93:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:95:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1902:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__first, __pivot))
~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1905:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__pivot, __last))
~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1909:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__first, __last);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__result);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:89:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__first + __secondChild,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
__first + (__secondChild - 1)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:133:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/7/bits/predefined_ops.h:64:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::DRHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:182:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(la.begin(), la.end());
~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4836:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 18%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTreeFactory.cpp
[ 18%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1948:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1952:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_RandomAccessIterator __cut =
^~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1886:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::reserve(std::vector<_Tp, _Alloc>::size_type) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:73:12: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__n,
^~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = std::move_iterator<double*>; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1934:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1923:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h:1851:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1674:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1675:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__a, __b))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:91:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:93:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:95:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1902:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__first, __pivot))
~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1905:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__pivot, __last))
~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1909:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__first, __last);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__result);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:89:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__first + __secondChild,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
__first + (__secondChild - 1)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:133:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/7/bits/predefined_ops.h:64:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
[ 18%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp
[ 18%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp
[ 18%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Newick.cpp
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const bpp::Node*&&>, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::DRNonHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:186:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(la.begin(), la.end());
~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4836:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 19%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp
[ 19%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 20%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/NexusIoTree.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1948:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1952:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_RandomAccessIterator __cut =
^~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1886:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1934:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1923:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h:1851:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1674:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1675:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__a, __b))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:91:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:93:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:95:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1902:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__first, __pivot))
~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1905:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__pivot, __last))
~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1909:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__first, __last);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__result);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:89:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__first + __secondChild,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
__first + (__secondChild - 1)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:133:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/7/bits/predefined_ops.h:64:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
[ 20%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp
[ 20%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp: In member function 'void bpp::BranchLikelihood::computeLogLikelihood()':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:115:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(la.begin(), la.end());
~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4836:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1948:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1952:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_RandomAccessIterator __cut =
^~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1886:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1934:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1923:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h:1851:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1674:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1675:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__a, __b))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:91:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:93:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:95:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1902:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__first, __pivot))
~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1905:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__pivot, __last))
~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1909:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__first, __last);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__result);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:89:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__first + __secondChild,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
__first + (__secondChild - 1)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:133:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/7/bits/predefined_ops.h:64:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
[ 20%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 21%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp
[ 21%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 21%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp: In member function 'std::pair<std::vector<std::__cxx11::basic_string<char> >, std::vector<double> > bpp::PairedSiteLikelihoods::computeExpectedLikelihoodWeights(int) const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:149:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
double Ymax = *max_element(models_logliks.begin(), models_logliks.end());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:159:88: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
double sumELLD = accumulate(exp_logliks_diffs.begin(), exp_logliks_diffs.end(), 0.0);
^
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:46:
/usr/include/c++/7/bits/stl_algo.h: In function '_FIter std::max_element(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:5668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
max_element(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:5668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:5678:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__gnu_cxx::__ops::__iter_less_iter());
^
In file included from /usr/include/c++/7/numeric:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:43:
/usr/include/c++/7/bits/stl_numeric.h: In function '_Tp std::accumulate(_InputIterator, _InputIterator, _Tp) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_numeric.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
accumulate(_InputIterator __first, _InputIterator __last, _Tp __init)
^~~~~~~~~~
/usr/include/c++/7/bits/stl_numeric.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:46:
/usr/include/c++/7/bits/stl_algo.h: In function '_ForwardIterator std::__max_element(_ForwardIterator, _ForwardIterator, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:5647:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__max_element(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:5647:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:5653:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__result, __first))
~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
[ 22%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 22%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
[ 23%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 23%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 23%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp
[ 23%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RASTools.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h: In member function 'void bpp::DRASDRTreeLikelihoodNodeData::eraseNeighborArrays()':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:211:30: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
nodeDLikelihoods_.erase(nodeDLikelihoods_.begin(), nodeDLikelihoods_.end());
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:212:31: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
nodeD2Likelihoods_.erase(nodeD2Likelihoods_.begin(), nodeD2Likelihoods_.end());
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1206:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
erase(const_iterator __first, const_iterator __last)
^~~~~
/usr/include/c++/7/bits/stl_vector.h:1206:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1210:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:165:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:165:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/vector.tcc:171:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE3(__last, end(), __first);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::move(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__miter_base(__last), __result);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = true; _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 23%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 23%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp
[ 24%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp: In member function 'virtual double bpp::DRHomogeneousMixedTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:262:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(la.begin(), la.end());
~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4836:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1948:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1952:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_RandomAccessIterator __cut =
^~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1886:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1934:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1923:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h:1851:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1674:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1675:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__a, __b))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:91:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:93:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:95:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1902:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__first, __pivot))
~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1905:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__pivot, __last))
~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1909:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__first, __last);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__result);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:89:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__first + __secondChild,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
__first + (__secondChild - 1)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:133:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/7/bits/predefined_ops.h:64:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
[ 24%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::DRHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:182:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(la.begin(), la.end());
~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4836:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1948:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1952:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_RandomAccessIterator __cut =
^~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1886:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1934:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1923:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h:1851:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const bpp::Node*&&>, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1674:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1675:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__a, __b))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:91:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:93:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:95:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1902:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__first, __pivot))
~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1905:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__pivot, __last))
~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1909:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__first, __last);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__result);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:89:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__first + __secondChild,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
__first + (__secondChild - 1)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:133:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/7/bits/predefined_ops.h:64:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::DRNonHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:186:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(la.begin(), la.end());
~~~~^~~~~~~~~~~~~~~~~~~~~~
[ 24%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp
[ 24%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4836:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1948:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1952:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_RandomAccessIterator __cut =
^~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1886:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1934:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1923:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h:1851:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1674:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1675:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__a, __b))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:91:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:93:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:95:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1902:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__first, __pivot))
~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1905:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__pivot, __last))
~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1909:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__first, __last);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__result);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:89:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__first + __secondChild,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
__first + (__secondChild - 1)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:133:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/7/bits/predefined_ops.h:64:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp
[ 25%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const bpp::Node*&&>, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp
[ 26%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp: In member function 'void bpp::BranchLikelihood::computeLogLikelihood()':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:115:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(la.begin(), la.end());
~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4836:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1948:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1952:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_RandomAccessIterator __cut =
^~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1886:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 26%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp: In member function 'std::pair<std::vector<std::__cxx11::basic_string<char> >, std::vector<double> > bpp::PairedSiteLikelihoods::computeExpectedLikelihoodWeights(int) const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:149:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
double Ymax = *max_element(models_logliks.begin(), models_logliks.end());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:159:88: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
double sumELLD = accumulate(exp_logliks_diffs.begin(), exp_logliks_diffs.end(), 0.0);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1934:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1923:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h:1851:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:46:
/usr/include/c++/7/bits/stl_algo.h: In function '_FIter std::max_element(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:5668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
max_element(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:5668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:5678:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__gnu_cxx::__ops::__iter_less_iter());
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/numeric:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:43:
/usr/include/c++/7/bits/stl_numeric.h: In function '_Tp std::accumulate(_InputIterator, _InputIterator, _Tp) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_numeric.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
accumulate(_InputIterator __first, _InputIterator __last, _Tp __init)
^~~~~~~~~~
/usr/include/c++/7/bits/stl_numeric.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_algo.h:1674:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1675:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__a, __b))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:91:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:93:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:95:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1902:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__first, __pivot))
~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1905:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__pivot, __last))
~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1909:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__first, __last);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__result);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:46:
/usr/include/c++/7/bits/stl_algo.h: In function '_ForwardIterator std::__max_element(_ForwardIterator, _ForwardIterator, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:5647:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__max_element(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:5647:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:5653:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__result, __first))
~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:89:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__first + __secondChild,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
__first + (__secondChild - 1)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:133:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/7/bits/predefined_ops.h:64:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
[ 27%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RASTools.cpp
[ 27%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::RHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:172:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(la.begin(), la.end());
~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4836:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1948:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1952:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_RandomAccessIterator __cut =
^~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1886:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1934:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1923:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h:1851:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1674:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1675:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__a, __b))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:91:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:93:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:95:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1902:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__first, __pivot))
~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1905:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__pivot, __last))
~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1909:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__first, __last);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__result);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:89:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__first + __secondChild,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
__first + (__secondChild - 1)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:133:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/7/bits/predefined_ops.h:64:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp
[ 27%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp
[ 28%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const bpp::Node*&&>, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
[ 28%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::RHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:172:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(la.begin(), la.end());
~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4836:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1948:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1952:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_RandomAccessIterator __cut =
^~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1886:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1934:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1923:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h:1851:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1674:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1675:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__a, __b))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:91:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:93:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:95:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1902:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__first, __pivot))
~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1905:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__pivot, __last))
~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1909:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__first, __last);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__result);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:89:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__first + __secondChild,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
__first + (__secondChild - 1)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:133:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/7/bits/predefined_ops.h:64:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp
[ 28%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::RNonHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:178:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(la.begin(), la.end());
~~~~^~~~~~~~~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4836:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1948:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1952:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_RandomAccessIterator __cut =
^~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1886:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1934:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1923:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h:1851:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1674:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1675:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__a, __b))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:91:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:93:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:95:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1902:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__first, __pivot))
~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1905:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__pivot, __last))
~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1909:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__first, __last);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__result);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:89:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__first + __secondChild,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
__first + (__secondChild - 1)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:133:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/7/bits/predefined_ops.h:64:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::RNonHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:178:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(la.begin(), la.end());
~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp
/usr/include/c++/7/bits/stl_algo.h:4826:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:4836:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1948:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1952:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_RandomAccessIterator __cut =
^~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1886:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1928:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1934:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1917:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1923:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h:1851:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1863:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1674:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__i, __first))
~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1675:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:402:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__a, __b))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__a, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:91:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
else if (__comp(__b, __c))
~~~~~~^~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:93:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:95:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1896:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1902:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__first, __pivot))
~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1905:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__comp(__pivot, __last))
~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1909:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::iter_swap(__first, __last);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/7/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__result);
^
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/predefined_ops.h:89:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
if (__comp(__first + __secondChild,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
__first + (__secondChild - 1)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/7/bits/stl_heap.h:133:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:71:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/7/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/7/bits/predefined_ops.h:64:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 29%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
[ 31%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 31%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 31%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 32%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 32%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 33%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 33%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 33%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 33%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp
[ 33%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 33%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
[ 33%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 34%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp
[ 35%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
[ 35%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp
[ 35%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 36%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.cpp
[ 37%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp
[ 37%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 37%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp
[ 37%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp
[ 38%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp
[ 38%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 39%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp
[ 39%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp
[ 39%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp
[ 40%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp
[ 40%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp
[ 40%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp
[ 40%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp
[ 40%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp
[ 41%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp
[ 41%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 41%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
[ 42%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 43%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 43%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 43%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 43%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 43%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
[ 44%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 45%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 45%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp
[ 45%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp
[ 45%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 45%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/GY94.cpp
[ 45%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp
[ 46%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/KCM.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/MG94.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp
[ 48%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp
[ 49%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 49%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp
[ 49%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 49%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 49%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YN98.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../WordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../WordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../WordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 49%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp
[ 50%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 50%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp
[ 51%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 51%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 51%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 51%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/GY94.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
[ 52%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/KCM.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 52%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 53%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp
[ 53%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp
[ 53%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 53%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp
[ 53%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/MG94.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 53%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp
[ 54%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 54%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp
[ 54%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 54%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YN98.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 55%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../WordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../WordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../WordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp
[ 56%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 57%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 57%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
[ 57%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 58%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp
[ 58%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 58%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp
[ 59%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
[ 59%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 59%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
[ 60%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 60%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp
[ 60%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 60%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 60%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp
[ 61%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 61%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 61%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 62%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp
[ 62%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
[ 62%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 62%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 62%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp
[ 63%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp
[ 63%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 63%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp
[ 64%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 64%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 64%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 65%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 65%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp
[ 66%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 66%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 66%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 66%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 66%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 66%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 67%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 67%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 68%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 68%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 68%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp
[ 68%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp
[ 68%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 68%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 69%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 69%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 70%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 70%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 70%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 71%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 72%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 72%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp
[ 72%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
[ 72%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 72%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 72%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp
[ 72%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
[ 73%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 74%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp
[ 74%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
[ 74%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWrappedModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 74%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp
[ 74%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
[ 75%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
[ 75%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 75%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 76%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 76%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 76%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp
[ 76%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 76%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 77%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 78%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp
[ 78%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp
[ 78%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 78%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 78%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 78%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /usr/include/Bpp/Numeric/Constraints.h:50,
from /usr/include/Bpp/Numeric/Parameter.h:44,
from /usr/include/Bpp/Numeric/ParameterList.h:43,
from /usr/include/Bpp/Numeric/Parametrizable.h:49,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /usr/include/Bpp/Numeric/Constraints.h:50,
from /usr/include/Bpp/Numeric/Parameter.h:44,
from /usr/include/Bpp/Numeric/ParameterList.h:43,
from /usr/include/Bpp/Numeric/Parametrizable.h:49,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/Parametrizable.h:47,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /usr/include/Bpp/Numeric/Constraints.h:50,
from /usr/include/Bpp/Numeric/Parameter.h:44,
from /usr/include/Bpp/Numeric/ParameterList.h:43,
from /usr/include/Bpp/Numeric/Parametrizable.h:49,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/Parametrizable.h:47,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /usr/include/Bpp/Numeric/Constraints.h:50,
from /usr/include/Bpp/Numeric/Parameter.h:44,
from /usr/include/Bpp/Numeric/ParameterList.h:43,
from /usr/include/Bpp/Numeric/Parametrizable.h:49,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/Parametrizable.h:47,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /usr/include/Bpp/Numeric/Constraints.h:50,
from /usr/include/Bpp/Numeric/Parameter.h:44,
from /usr/include/Bpp/Numeric/ParameterList.h:43,
from /usr/include/Bpp/Numeric/Parametrizable.h:49,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/Parametrizable.h:47,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/Parametrizable.h:47,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 78%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/StateMap.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 79%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 79%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp
[ 80%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModelSet.cpp
[ 80%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 80%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp
[ 80%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 81%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp
[ 81%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp
[ 81%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 81%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 82%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/StateMap.cpp
[ 83%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 83%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModelSet.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /usr/include/Bpp/Numeric/Constraints.h:50,
from /usr/include/Bpp/Numeric/Parameter.h:44,
from /usr/include/Bpp/Numeric/ParameterList.h:43,
from /usr/include/Bpp/Numeric/Parametrizable.h:49,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /usr/include/Bpp/Numeric/Constraints.h:50,
from /usr/include/Bpp/Numeric/Parameter.h:44,
from /usr/include/Bpp/Numeric/ParameterList.h:43,
from /usr/include/Bpp/Numeric/Parametrizable.h:49,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/Parametrizable.h:47,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /usr/include/Bpp/Numeric/Constraints.h:50,
from /usr/include/Bpp/Numeric/Parameter.h:44,
from /usr/include/Bpp/Numeric/ParameterList.h:43,
from /usr/include/Bpp/Numeric/Parametrizable.h:49,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 83%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/Parametrizable.h:47,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /usr/include/Bpp/Numeric/Constraints.h:50,
from /usr/include/Bpp/Numeric/Parameter.h:44,
from /usr/include/Bpp/Numeric/ParameterList.h:43,
from /usr/include/Bpp/Numeric/Parametrizable.h:49,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/Parametrizable.h:47,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /usr/include/Bpp/Numeric/Constraints.h:50,
from /usr/include/Bpp/Numeric/Parameter.h:44,
from /usr/include/Bpp/Numeric/ParameterList.h:43,
from /usr/include/Bpp/Numeric/Parametrizable.h:49,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/Parametrizable.h:47,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/Parametrizable.h:47,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:44,
from /usr/include/Bpp/Numeric/AbstractParameterAliasable.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 83%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp: In member function 'void bpp::NNITopologySearch::searchPhyML()':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:267:32: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
improvement.erase(improvement.begin() + static_cast<ptrdiff_t>(j - 1));
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:290:31: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
improvement.insert(improvement.begin() + static_cast<ptrdiff_t>(pos), diff);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:296:31: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
improvement.insert(improvement.end(), diff);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:352:28: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
improvement.erase(improvement.begin() + static_cast<ptrdiff_t>(n), improvement.end());
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1206:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
erase(const_iterator __first, const_iterator __last)
^~~~~
/usr/include/c++/7/bits/stl_vector.h:1206:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1210:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
^
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1179:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
erase(const_iterator __position)
^~~~~
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:114:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:136:19: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_insert_aux(__pos, std::move(__x_copy._M_val()));
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:143:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(begin() + (__position - cbegin()), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:165:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:165:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/vector.tcc:171:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE3(__last, end(), __first);
^
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:153:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/vector.tcc:157:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE3(__position + 1, end(), __position);
^
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:364:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::move(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__miter_base(__last), __result);
^
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = true; _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 84%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp
[ 84%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.cpp
[ 84%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.cpp
[ 84%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp
[ 84%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp
[ 85%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp: In member function 'void bpp::NNITopologySearch::searchPhyML()':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:267:32: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
improvement.erase(improvement.begin() + static_cast<ptrdiff_t>(j - 1));
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:290:31: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
improvement.insert(improvement.begin() + static_cast<ptrdiff_t>(pos), diff);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:296:31: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
improvement.insert(improvement.end(), diff);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:352:28: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
improvement.erase(improvement.begin() + static_cast<ptrdiff_t>(n), improvement.end());
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1206:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
erase(const_iterator __first, const_iterator __last)
^~~~~
/usr/include/c++/7/bits/stl_vector.h:1206:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1210:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
^
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1179:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
erase(const_iterator __position)
^~~~~
/usr/include/c++/7/bits/stl_vector.h:1180:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:114:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:136:19: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_insert_aux(__pos, std::move(__x_copy._M_val()));
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:143:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(begin() + (__position - cbegin()), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:165:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:165:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/vector.tcc:171:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE3(__last, end(), __first);
^
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:153:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/vector.tcc:157:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_GLIBCXX_MOVE3(__position + 1, end(), __position);
^
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:364:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::move(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
move(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__miter_base(__last), __result);
^
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = true; _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 85%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 85%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 85%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/PatternTools.cpp
[ 86%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 86%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp
[ 86%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp
[ 86%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 86%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 87%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 88%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/SitePatterns.cpp
[ 88%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 88%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = bpp::MutationPath; _Alloc = std::allocator<bpp::MutationPath>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<bpp::MutationPath*, std::vector<bpp::MutationPath> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const bpp::MutationPath&}; _Tp = bpp::MutationPath; _Alloc = std::allocator<bpp::MutationPath>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<bpp::MutationPath>::iterator {aka __gnu_cxx::__normal_iterator<bpp::MutationPath*, std::vector<bpp::MutationPath> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
[ 89%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 89%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp
[ 89%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/PatternTools.cpp
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const bpp::Node*&&>, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, double>}; _Tp = std::pair<std::__cxx11::basic_string<char>, double>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, double>}; _Tp = std::pair<std::__cxx11::basic_string<char>, double>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<std::pair<std::__cxx11::basic_string<char>, double> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = std::pair<std::__cxx11::basic_string<char>, double>*; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*; _Allocator = std::allocator<std::pair<std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*; _Tp = std::pair<std::__cxx11::basic_string<char>, double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*; bool _TrivialValueTypes = false]':
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
[ 89%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
[ 90%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp
[ 90%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 90%] Linking CXX static library libbpp-phyl.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-phyl-static.dir/cmake_clean_target.cmake
[ 90%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-static.dir/link.txt --verbose=1
/usr/bin/ar qc libbpp-phyl.a CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o 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CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 91%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/SitePatterns.cpp
[ 91%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = bpp::MutationPath; _Alloc = std::allocator<bpp::MutationPath>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<bpp::MutationPath*, std::vector<bpp::MutationPath> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const bpp::MutationPath&}; _Tp = bpp::MutationPath; _Alloc = std::allocator<bpp::MutationPath>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<bpp::MutationPath>::iterator {aka __gnu_cxx::__normal_iterator<bpp::MutationPath*, std::vector<bpp::MutationPath> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 91%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp
/usr/bin/ranlib libbpp-phyl.a
[ 91%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 91%] Built target bpp-phyl-static
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const bpp::Node*&&>, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, double>}; _Tp = std::pair<std::__cxx11::basic_string<char>, double>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, double>}; _Tp = std::pair<std::__cxx11::basic_string<char>, double>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<std::pair<std::__cxx11::basic_string<char>, double> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = std::pair<std::__cxx11::basic_string<char>, double>*; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*; _Allocator = std::allocator<std::pair<std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*; _Tp = std::pair<std::__cxx11::basic_string<char>, double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*; bool _TrivialValueTypes = false]':
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 92%] Linking CXX shared library libbpp-phyl.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-shared.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-phyl.so.11 -o libbpp-phyl.so.11.0.0 CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o 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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 92%] Building CXX object test/CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o
[ 92%] Building CXX object test/CMakeFiles/test_mapping.dir/test_mapping.cpp.o
[ 92%] Building CXX object test/CMakeFiles/test_likelihood_nh.dir/test_likelihood_nh.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_mapping.dir/test_mapping.cpp.o -c /<<PKGBUILDDIR>>/test/test_mapping.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -c /<<PKGBUILDDIR>>/test/test_likelihood.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_likelihood_nh.dir/test_likelihood_nh.cpp.o -c /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp
[ 93%] Building CXX object test/CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -c /<<PKGBUILDDIR>>/test/test_likelihood_clock.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 93%] Linking CXX executable test_likelihood
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -o test_likelihood -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
[ 93%] Linking CXX executable test_likelihood_clock
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood_clock.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -o test_likelihood_clock -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 93%] Built target test_likelihood
make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/depend
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_simulations.dir/DependInfo.cmake --color=
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
Scanning dependencies of target test_simulations
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/build
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
[ 94%] Building CXX object test/CMakeFiles/test_simulations.dir/test_simulations.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_simulations.dir/test_simulations.cpp.o -c /<<PKGBUILDDIR>>/test/test_simulations.cpp
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 94%] Built target test_likelihood_clock
make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_detailed_simulations.dir/DependInfo.cmake --color=
Scanning dependencies of target test_detailed_simulations
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
[ 95%] Building CXX object test/CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -c /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 96%] Linking CXX executable test_likelihood_nh
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood_nh.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_likelihood_nh.dir/test_likelihood_nh.cpp.o -o test_likelihood_nh -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
[ 96%] Linking CXX executable test_mapping
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mapping.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_mapping.dir/test_mapping.cpp.o -o test_mapping -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Built target test_likelihood_nh
make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_mapping_codon.dir/DependInfo.cmake --color=
Scanning dependencies of target test_mapping_codon
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object test/CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -c /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Built target test_mapping
make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_models.dir/DependInfo.cmake --color=
Scanning dependencies of target test_models
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object test/CMakeFiles/test_models.dir/test_models.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_models.dir/test_models.cpp.o -c /<<PKGBUILDDIR>>/test/test_models.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:44,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:44,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:44,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
[ 96%] Linking CXX executable test_models
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_models.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_models.dir/test_models.cpp.o -o test_models -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Numeric/VectorExceptions.h:47,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Numeric/VectorExceptions.h:46,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Built target test_models
make -f test/CMakeFiles/test_nhx.dir/build.make test/CMakeFiles/test_nhx.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_nhx.dir/DependInfo.cmake --color=
Scanning dependencies of target test_nhx
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_nhx.dir/build.make test/CMakeFiles/test_nhx.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object test/CMakeFiles/test_nhx.dir/test_nhx.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_nhx.dir/test_nhx.cpp.o -c /<<PKGBUILDDIR>>/test/test_nhx.cpp
[ 96%] Linking CXX executable test_detailed_simulations
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_detailed_simulations.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -o test_detailed_simulations -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 96%] Linking CXX executable test_simulations
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simulations.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_simulations.dir/test_simulations.cpp.o -o test_simulations -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Built target test_detailed_simulations
make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_bowker.dir/DependInfo.cmake --color=
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
Scanning dependencies of target test_bowker
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /<<PKGBUILDDIR>>/test/test_bowker.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Built target test_simulations
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/depend
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_parsimony.dir/DependInfo.cmake --color=
Scanning dependencies of target test_parsimony
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object test/CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o -c /<<PKGBUILDDIR>>/test/test_parsimony.cpp
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 97%] Linking CXX executable test_mapping_codon
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mapping_codon.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -o test_mapping_codon -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
[ 98%] Linking CXX executable test_nhx
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_nhx.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_nhx.dir/test_nhx.cpp.o -o test_nhx -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target test_mapping_codon
make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree.dir/DependInfo.cmake --color=
Scanning dependencies of target test_tree
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Building CXX object test/CMakeFiles/test_tree.dir/test_tree.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_tree.dir/test_tree.cpp.o -c /<<PKGBUILDDIR>>/test/test_tree.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target test_nhx
make -f test/CMakeFiles/test_tree_getpath.dir/build.make test/CMakeFiles/test_tree_getpath.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree_getpath.dir/DependInfo.cmake --color=
Scanning dependencies of target test_tree_getpath
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_tree_getpath.dir/build.make test/CMakeFiles/test_tree_getpath.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Building CXX object test/CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o -c /<<PKGBUILDDIR>>/test/test_tree_getpath.cpp
[ 99%] Linking CXX executable test_parsimony
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_parsimony.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o -o test_parsimony -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target test_parsimony
make -f test/CMakeFiles/test_tree_rootat.dir/build.make test/CMakeFiles/test_tree_rootat.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree_rootat.dir/DependInfo.cmake --color=
Scanning dependencies of target test_tree_rootat
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_tree_rootat.dir/build.make test/CMakeFiles/test_tree_rootat.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Building CXX object test/CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wno-deprecated -g -fPIE -o CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o -c /<<PKGBUILDDIR>>/test/test_tree_rootat.cpp
[ 99%] Linking CXX executable test_tree_getpath
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree_getpath.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o -o test_tree_getpath -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/test/test_tree.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 99%] Built target test_tree_getpath
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/test/test_tree.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/c++/7/stdexcept:39,
from /usr/include/c++/7/array:39,
from /usr/include/Bpp/Exceptions.h:47,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/test/test_tree.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:206:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(),
^~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:218:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/test/test_tree.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Text/TextTools.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/test/test_tree.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1257:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1263:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:203:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:206:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(__first, __last);
~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:127:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_construct.h:137:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__destroy(__first, __last);
~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 99%] Linking CXX executable test_tree
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree.dir/link.txt --verbose=1
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_tree.dir/test_tree.cpp.o -o test_tree -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/7/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/7/bits/stl_construct.h:117:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target test_tree
[ 99%] Linking CXX executable test_bowker
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bowker.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_bowker.dir/test_bowker.cpp.o -o test_bowker -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target test_bowker
[100%] Linking CXX executable test_tree_rootat
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree_rootat.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wno-deprecated -g -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o -o test_tree_rootat -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target test_tree_rootat
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_test -a
cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=-j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
Start 1: test_bowker
Start 2: test_detailed_simulations
Start 3: test_likelihood
Start 4: test_likelihood_clock
1/14 Test #4: test_likelihood_clock ............ Passed 2.31 sec
Start 5: test_likelihood_nh
2/14 Test #3: test_likelihood .................. Passed 5.34 sec
Start 6: test_mapping
3/14 Test #6: test_mapping ..................... Passed 64.73 sec
Start 7: test_mapping_codon
4/14 Test #2: test_detailed_simulations ........ Passed 71.29 sec
Start 8: test_models
5/14 Test #8: test_models ...................... Passed 8.18 sec
Start 9: test_nhx
6/14 Test #9: test_nhx ......................... Passed 0.57 sec
Start 10: test_parsimony
7/14 Test #10: test_parsimony ................... Passed 0.52 sec
Start 11: test_simulations
8/14 Test #1: test_bowker ...................... Passed 665.81 sec
Start 12: test_tree
9/14 Test #7: test_mapping_codon ............... Passed 651.72 sec
Start 13: test_tree_getpath
10/14 Test #13: test_tree_getpath ................ Passed 0.21 sec
Start 14: test_tree_rootat
11/14 Test #14: test_tree_rootat ................. Passed 3.01 sec
12/14 Test #12: test_tree ........................ Passed 165.34 sec
13/14 Test #11: test_simulations ................. Passed 1116.72 sec
14/14 Test #5: test_likelihood_nh ............... Passed 6696.85 sec
100% tests passed, 0 tests failed out of 14
Total Test time (real) = 6699.21 sec
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/depend
make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-static.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-shared.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/CMakeFiles/bpp-phyl-static.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/CMakeFiles/bpp-phyl-shared.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 46%] Built target bpp-phyl-static
[ 92%] Built target bpp-phyl-shared
make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/depend
make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/depend
make -f test/CMakeFiles/test_likelihood_nh.dir/build.make test/CMakeFiles/test_likelihood_nh.dir/depend
make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_likelihood.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_mapping.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_likelihood_clock.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_likelihood_nh.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_likelihood_nh.dir/build.make test/CMakeFiles/test_likelihood_nh.dir/build
make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_mapping.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_likelihood.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_likelihood_clock.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_likelihood_nh.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 92%] Built target test_mapping
[ 92%] Built target test_likelihood
[ 93%] Built target test_likelihood_clock
make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/depend
make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/depend
[ 94%] Built target test_likelihood_nh
make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/depend
make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_detailed_simulations.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_simulations.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_models.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_mapping_codon.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_detailed_simulations.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_simulations.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_models.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_mapping_codon.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 95%] Built target test_detailed_simulations
make -f test/CMakeFiles/test_nhx.dir/build.make test/CMakeFiles/test_nhx.dir/depend
[ 96%] Built target test_simulations
make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend
[ 96%] Built target test_models
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_nhx.dir/DependInfo.cmake --color=
make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_bowker.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_parsimony.dir/DependInfo.cmake --color=
[ 97%] Built target test_mapping_codon
make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_nhx.dir/build.make test/CMakeFiles/test_nhx.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_nhx.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_parsimony.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_bowker.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_tree.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target test_nhx
make -f test/CMakeFiles/test_tree_getpath.dir/build.make test/CMakeFiles/test_tree_getpath.dir/depend
[ 98%] Built target test_parsimony
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree_getpath.dir/DependInfo.cmake --color=
make -f test/CMakeFiles/test_tree_rootat.dir/build.make test/CMakeFiles/test_tree_rootat.dir/depend
[ 98%] Built target test_bowker
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree_rootat.dir/DependInfo.cmake --color=
[ 98%] Built target test_tree
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_tree_getpath.dir/build.make test/CMakeFiles/test_tree_getpath.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_tree_rootat.dir/build.make test/CMakeFiles/test_tree_rootat.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_tree_getpath.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_tree_rootat.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target test_tree_getpath
[100%] Built target test_tree_rootat
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config-version.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11.0.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/AncestralStateReconstruction.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/App
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/BipartitionList.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/BipartitionTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/BioNJ.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/DistanceEstimation.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/DistanceMethod.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/NeighborJoining.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/PGMA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/CladogramPlot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawing.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOTransitionModelFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOTreeReaderFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOTreeWriterFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoTree.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoTreeFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/Newick.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/NexusIoTree.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/Nhx.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RASTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionMethods.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionReward.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/Mapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/Reward.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/RewardMapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/RewardMappingTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionMapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionMappingTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionRegister.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractWrappedModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AnonymousSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/GY94.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/KCM.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/MG94.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/SENCA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YN98.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M1.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M10.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M2.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M3.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M7.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M8.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M9.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FromMixtureSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/G2001.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/InMixedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MixedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MixedSubstitutionModelSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/F84.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/GTR.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/HKY85.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/JCnuc.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/K80.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/L95.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/RN95.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/RN95s.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/SSR.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/T92.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/TN93.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/YpR.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/gBGC.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/OneChangeTransitionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/Coala.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/CoalaCore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/DSO78.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/JCprot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/JTT92.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LG08.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LGL08_CAT.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EHO.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX2.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX3.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL2.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL3.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/WAG01.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RE08.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/ConstantRateDistribution.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/ExponentialDiscreteRateDistribution.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/GammaDiscreteRateDistribution.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/GaussianDiscreteRateDistribution.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/StateMap.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelSetTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/TS98.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/WordSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/WrappedModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/NNISearchable.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/NNITopologySearch.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Node.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/NodeTemplate.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/OptimizationTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyScore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/PatternTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/PhyloStatistics.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/DetailedSiteSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/MutationProcess.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SiteSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/SitePatterns.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TopologySearch.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Tree.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TreeExceptions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TreeTemplate.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TreeTemplateTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TreeTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets-none.cmake
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--override 's/libbpp-\([-a-z]\+\)[0-9]*-dev/libbpp-\1-dev/' \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
--> libbpp-core-dev package exists.
--> libbpp-seq-dev package exists.
set -e
install -d -m 755 debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbpp-phyl11/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.a debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11 debian/libbpp-phyl11/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11.0.0 debian/libbpp-phyl11/usr/lib/arm-linux-gnueabihf
PKGDEV=libbpp-phyl-dev
PKGSHL=libbpp-phyl11
install -d -m 755 debian/libbpp-phyl-dev/usr/include
mv debian/tmp/usr/include/Bpp debian/libbpp-phyl-dev/usr/include
install -d -m 755 debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-phyl11/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package libbpp-phyl-dev: unused substitution variable ${devlibs:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libbpp-phyl-dev' in '../libbpp-phyl-dev_2.3.2-2_armhf.deb'.
dpkg-deb: building package 'libbpp-phyl11-dbgsym' in '../libbpp-phyl11-dbgsym_2.3.2-2_armhf.deb'.
dpkg-deb: building package 'libbpp-phyl11' in '../libbpp-phyl11_2.3.2-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libbpp-phyl_2.3.2-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build libbpp-phyl-2.3.2
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-02-14T17:45:32Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libbpp-phyl_2.3.2-2_armhf.changes:
----------------------------------
Format: 1.8
Date: Fri, 09 Feb 2018 09:10:11 +0200
Source: libbpp-phyl
Binary: libbpp-phyl-dev libbpp-phyl11
Architecture: armhf
Version: 2.3.2-2
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Julien Dutheil <julien.dutheil@univ-montp2.fr>
Description:
libbpp-phyl-dev - Bio++ Phylogenetic library development files
libbpp-phyl11 - Bio++ Phylogenetic library
Closes: 889953
Changes:
libbpp-phyl (2.3.2-2) unstable; urgency=medium
.
* Fixed covariant return type on 32bits arch.
Closes: #889953
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f6cfbc692cc975b8e5a7ecca3b3b140066d8d0d2 1425288 libbpp-phyl11_2.3.2-2_armhf.deb
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Checksums-Sha256:
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Files:
5986f11b202d356214c5d2ccc6736e87 6386444 libdevel optional libbpp-phyl-dev_2.3.2-2_armhf.deb
3c665cfeab521004ebd07024ed74adc5 16314064 debug optional libbpp-phyl11-dbgsym_2.3.2-2_armhf.deb
12dba7efd74bf9d78af45d9b874babb9 1425288 libs optional libbpp-phyl11_2.3.2-2_armhf.deb
356d1688dc6b8eae0ce19c8d5786f83d 6450 science optional libbpp-phyl_2.3.2-2_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libbpp-phyl-dev_2.3.2-2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 6386444 bytes: control archive=6668 bytes.
866 bytes, 19 lines control
19680 bytes, 225 lines md5sums
Package: libbpp-phyl-dev
Source: libbpp-phyl
Version: 2.3.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 98015
Depends: libbpp-phyl11 (= 2.3.2-2), libbpp-seq-dev (>= 2.3.2)
Section: libdevel
Priority: optional
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Bio++ Phylogenetic library development files
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
Bio++ is Object Oriented and is designed to be both easy to use and
computer efficient. Bio++ intends to help programmers to write computer
expensive programs, by providing them a set of re-usable tools.
.
This package contains the static library and the header files of the
Bio++ classes for phylogenetics.
drwxr-xr-x root/root 0 2018-02-09 07:10 ./
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/include/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/include/Bpp/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/include/Bpp/Phyl/
-rw-r--r-- root/root 3681 2017-12-09 15:50 ./usr/include/Bpp/Phyl/AncestralStateReconstruction.h
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/include/Bpp/Phyl/App/
-rw-r--r-- root/root 31372 2017-12-09 15:50 ./usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h
-rw-r--r-- root/root 8180 2017-12-09 15:50 ./usr/include/Bpp/Phyl/BipartitionList.h
-rw-r--r-- root/root 6542 2017-12-09 15:50 ./usr/include/Bpp/Phyl/BipartitionTools.h
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/include/Bpp/Phyl/Distance/
-rw-r--r-- root/root 7655 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h
-rw-r--r-- root/root 3916 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Distance/BioNJ.h
-rw-r--r-- root/root 19367 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Distance/DistanceEstimation.h
-rw-r--r-- root/root 3371 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Distance/DistanceMethod.h
-rw-r--r-- root/root 4014 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h
-rw-r--r-- root/root 4217 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Distance/NeighborJoining.h
-rw-r--r-- root/root 4114 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Distance/PGMA.h
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/include/Bpp/Phyl/Graphics/
-rw-r--r-- root/root 3320 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h
-rw-r--r-- root/root 12607 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h
-rw-r--r-- root/root 3441 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Graphics/CladogramPlot.h
-rw-r--r-- root/root 3369 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h
-rw-r--r-- root/root 11845 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Graphics/TreeDrawing.h
-rw-r--r-- root/root 6675 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h
-rw-r--r-- root/root 8890 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/include/Bpp/Phyl/Io/
-rw-r--r-- root/root 4567 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h
-rw-r--r-- root/root 3309 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.h
-rw-r--r-- root/root 3309 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.h
-rw-r--r-- root/root 3192 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h
-rw-r--r-- root/root 7971 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h
-rw-r--r-- root/root 3621 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/BppOTransitionModelFormat.h
-rw-r--r-- root/root 3253 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/BppOTreeReaderFormat.h
-rw-r--r-- root/root 3253 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/BppOTreeWriterFormat.h
-rw-r--r-- root/root 5033 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h
-rw-r--r-- root/root 3614 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h
-rw-r--r-- root/root 4434 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h
-rw-r--r-- root/root 3269 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h
-rw-r--r-- root/root 4350 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h
-rw-r--r-- root/root 4622 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h
-rw-r--r-- root/root 3327 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h
-rw-r--r-- root/root 7800 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/IoTree.h
-rw-r--r-- root/root 3073 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/IoTreeFactory.h
-rw-r--r-- root/root 6330 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/Newick.h
-rw-r--r-- root/root 4565 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/NexusIoTree.h
-rw-r--r-- root/root 8604 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/Nhx.h
-rw-r--r-- root/root 3104 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/include/Bpp/Phyl/Likelihood/
-rw-r--r-- root/root 5213 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h
-rw-r--r-- root/root 9827 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h
-rw-r--r-- root/root 10189 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h
-rw-r--r-- root/root 10017 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h
-rw-r--r-- root/root 4829 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h
-rw-r--r-- root/root 2829 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h
-rw-r--r-- root/root 14532 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h
-rw-r--r-- root/root 10861 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h
-rw-r--r-- root/root 7434 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h
-rw-r--r-- root/root 12337 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h
-rw-r--r-- root/root 12712 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h
-rw-r--r-- root/root 3944 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h
-rw-r--r-- root/root 3282 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h
-rw-r--r-- root/root 7808 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h
-rw-r--r-- root/root 4137 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h
-rw-r--r-- root/root 4165 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h
-rw-r--r-- root/root 7118 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h
-rw-r--r-- root/root 8592 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h
-rw-r--r-- root/root 4545 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h
-rw-r--r-- root/root 6274 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h
-rw-r--r-- root/root 4328 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h
-rw-r--r-- root/root 2576 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/RASTools.h
-rw-r--r-- root/root 6509 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h
-rw-r--r-- root/root 6840 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h
-rw-r--r-- root/root 11169 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h
-rw-r--r-- root/root 10214 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h
-rw-r--r-- root/root 11557 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h
-rw-r--r-- root/root 3244 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h
-rw-r--r-- root/root 13963 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h
-rw-r--r-- root/root 4296 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h
-rw-r--r-- root/root 4622 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/include/Bpp/Phyl/Mapping/
-rw-r--r-- root/root 12487 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h
-rw-r--r-- root/root 5372 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Mapping/DecompositionMethods.h
-rw-r--r-- root/root 3948 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Mapping/DecompositionReward.h
-rw-r--r-- root/root 4201 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h
-rw-r--r-- root/root 4603 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h
-rw-r--r-- root/root 7166 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Mapping/Mapping.h
-rw-r--r-- root/root 6678 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h
-rw-r--r-- root/root 4222 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h
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drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/include/Bpp/Phyl/Model/RateDistribution/
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drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/include/Bpp/Phyl/Parsimony/
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drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/include/Bpp/Phyl/Simulation/
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-rw-r--r-- root/root 5513 2017-12-09 15:50 ./usr/include/Bpp/Phyl/SitePatterns.h
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-rw-r--r-- root/root 15366 2017-12-09 15:50 ./usr/include/Bpp/Phyl/Tree.h
-rw-r--r-- root/root 7695 2017-12-09 15:50 ./usr/include/Bpp/Phyl/TreeExceptions.h
-rw-r--r-- root/root 20203 2017-12-09 15:50 ./usr/include/Bpp/Phyl/TreeTemplate.h
-rw-r--r-- root/root 44287 2017-12-09 15:50 ./usr/include/Bpp/Phyl/TreeTemplateTools.h
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drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/lib/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/lib/arm-linux-gnueabihf/cmake/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/
-rw-r--r-- root/root 1610 2018-02-09 07:10 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config-version.cmake
-rw-r--r-- root/root 2311 2018-02-09 07:10 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config.cmake
-rw-r--r-- root/root 1515 2018-02-09 07:10 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets-none.cmake
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-rw-r--r-- root/root 98687528 2018-02-09 07:10 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.a
lrwxrwxrwx root/root 0 2018-02-09 07:10 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so -> libbpp-phyl.so.11
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/share/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/share/doc/libbpp-phyl-dev/
-rw-r--r-- root/root 1770 2018-02-09 07:10 ./usr/share/doc/libbpp-phyl-dev/changelog.Debian.gz
-rw-r--r-- root/root 7452 2017-12-09 15:50 ./usr/share/doc/libbpp-phyl-dev/changelog.gz
-rw-r--r-- root/root 3116 2018-02-09 07:10 ./usr/share/doc/libbpp-phyl-dev/copyright
libbpp-phyl11-dbgsym_2.3.2-2_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 16314064 bytes: control archive=552 bytes.
411 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libbpp-phyl11-dbgsym
Source: libbpp-phyl
Version: 2.3.2-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 18634
Depends: libbpp-phyl11 (= 2.3.2-2)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libbpp-phyl11
Build-Ids: 76bf4f6a598c73240fc7e022bbda8a0485becf8d
drwxr-xr-x root/root 0 2018-02-09 07:10 ./
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/lib/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/lib/debug/.build-id/76/
-rw-r--r-- root/root 19070516 2018-02-09 07:10 ./usr/lib/debug/.build-id/76/bf4f6a598c73240fc7e022bbda8a0485becf8d.debug
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/share/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-02-09 07:10 ./usr/share/doc/libbpp-phyl11-dbgsym -> libbpp-phyl11
libbpp-phyl11_2.3.2-2_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 1425288 bytes: control archive=1028 bytes.
846 bytes, 19 lines control
313 bytes, 4 lines md5sums
29 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libbpp-phyl11
Source: libbpp-phyl
Version: 2.3.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 10471
Depends: libbpp-core3, libbpp-seq11, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Bio++ Phylogenetic library
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
Bio++ is Object Oriented and is designed to be both easy to use and
computer efficient. Bio++ intends to help programmers to write computer
expensive programs, by providing them a set of re-usable tools.
.
This package contains the Bio++ classes for phylogenetics.
drwxr-xr-x root/root 0 2018-02-09 07:10 ./
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/lib/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2018-02-09 07:10 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11 -> libbpp-phyl.so.11.0.0
-rw-r--r-- root/root 10696120 2018-02-09 07:10 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11.0.0
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/share/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-02-09 07:10 ./usr/share/doc/libbpp-phyl11/
-rw-r--r-- root/root 1770 2018-02-09 07:10 ./usr/share/doc/libbpp-phyl11/changelog.Debian.gz
-rw-r--r-- root/root 7452 2017-12-09 15:50 ./usr/share/doc/libbpp-phyl11/changelog.gz
-rw-r--r-- root/root 3116 2018-02-09 07:10 ./usr/share/doc/libbpp-phyl11/copyright
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 823132
Build-Time: 9444
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 322
Job: libbpp-phyl_2.3.2-2
Machine Architecture: armhf
Package: libbpp-phyl
Package-Time: 9817
Source-Version: 2.3.2-2
Space: 823132
Status: successful
Version: 2.3.2-2
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Finished at 2018-02-14T17:45:32Z
Build needed 02:43:37, 823132k disc space